@weng-lab/ui-components 3.0.1 → 3.1.1

package/dist/ui-components.es113.js.map

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package/dist/ui-components.es114.js

@@ -1,7 +1,46 @@
-function n(t) {
-  return typeof t == "string";
+import * as i from "react";
+import r from "./ui-components.es91.js";
+import { clsx as t } from "./ui-components.es92.js";
+import n from "./ui-components.es115.js";
+import { j as l } from "./ui-components.es16.js";
+const m = (s) => {
+  const {
+    open: e
+  } = s;
+  return {
+    offset: t(e && n.valueLabelOpen),
+    circle: n.valueLabelCircle,
+    label: n.valueLabelLabel
+  };
+};
+function p(s) {
+  const {
+    children: e,
+    className: c,
+    value: o
+  } = s, a = m(s);
+  return e ? /* @__PURE__ */ i.cloneElement(e, {
+    className: e.props.className
+  }, /* @__PURE__ */ l.jsxs(i.Fragment, {
+    children: [e.props.children, /* @__PURE__ */ l.jsx("span", {
+      className: t(a.offset, c),
+      "aria-hidden": !0,
+      children: /* @__PURE__ */ l.jsx("span", {
+        className: a.circle,
+        children: /* @__PURE__ */ l.jsx("span", {
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+        })
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+    })]
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 }
+process.env.NODE_ENV !== "production" && (p.propTypes = {
+  children: r.element.isRequired,
+  className: r.string,
+  value: r.node
+});
 export {
-  n as default
+  p as default
 };
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package/dist/ui-components.es114.js.map

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package/dist/ui-components.es115.js

@@ -1,10 +1,11 @@
-import e from "./ui-components.es154.js";
-function o(r) {
-  if (typeof r != "string")
-    throw new Error(process.env.NODE_ENV !== "production" ? "MUI: `capitalize(string)` expects a string argument." : e(7));
-  return r.charAt(0).toUpperCase() + r.slice(1);
+import e from "./ui-components.es106.js";
+import l from "./ui-components.es107.js";
+function t(r) {
+  return e("MuiSlider", r);
 }
+const i = l("MuiSlider", ["root", "active", "colorPrimary", "colorSecondary", "colorError", "colorInfo", "colorSuccess", "colorWarning", "disabled", "dragging", "focusVisible", "mark", "markActive", "marked", "markLabel", "markLabelActive", "rail", "sizeSmall", "thumb", "thumbColorPrimary", "thumbColorSecondary", "thumbColorError", "thumbColorSuccess", "thumbColorInfo", "thumbColorWarning", "track", "trackInverted", "trackFalse", "thumbSizeSmall", "valueLabel", "valueLabelOpen", "valueLabelCircle", "valueLabelLabel", "vertical"]);
 export {
-  o as default
+  i as default,
+  t as getSliderUtilityClass
 };
 //# sourceMappingURL=ui-components.es115.js.map

package/dist/ui-components.es115.js.map

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package/dist/ui-components.es116.js

@@ -1,9 +1,27 @@
-function u(e, r) {
-  return process.env.NODE_ENV === "production" ? () => null : function(...n) {
-    return e(...n) || r(...n);
-  };
+import i from "./ui-components.es223.js";
+import a from "./ui-components.es224.js";
+import P from "./ui-components.es164.js";
+import S from "./ui-components.es225.js";
+function x(o) {
+  const {
+    elementType: t,
+    externalSlotProps: p,
+    ownerState: e,
+    skipResolvingSlotProps: s = !1,
+    ...n
+  } = o, r = s ? {} : i(p, e), {
+    props: l,
+    internalRef: f
+  } = a({
+    ...n,
+    externalSlotProps: r
+  }), m = P(f, r?.ref, o.additionalProps?.ref);
+  return S(t, {
+    ...l,
+    ref: m
+  }, e);
 }
 export {
-  u as default
+  x as default
 };
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package/dist/ui-components.es116.js.map

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package/dist/ui-components.es117.js

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-          theme: o,
-          ...t
-        }) : r
-      })
-    );
-  };
-}
-function a() {
-  return e;
+function n(t) {
+  return typeof t == "string";
 }
 export {
-  x as globalCss,
-  a as internal_createExtendSxProp
+  n as default
 };
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package/dist/ui-components.es118.js

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-      ...n
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-    ...t,
-    ...e
-  }, {
-    ...i,
-    sx: r
-  };
+import e from "./ui-components.es166.js";
+function o(r) {
+  if (typeof r != "string")
+    throw new Error(process.env.NODE_ENV !== "production" ? "MUI: `capitalize(string)` expects a string argument." : e(7));
+  return r.charAt(0).toUpperCase() + r.slice(1);
 }
 export {
-  P as default
+  o as default
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-import r from "./ui-components.es147.js";
-import t from "./ui-components.es122.js";
-import { j as m } from "./ui-components.es15.js";
-import p from "./ui-components.es297.js";
-function s(e) {
-  return /* @__PURE__ */ m.jsx(p, {
-    ...e,
-    defaultTheme: r,
-    themeId: t
-  });
+function u(e, r) {
+  return process.env.NODE_ENV === "production" ? () => null : function(...n) {
+    return e(...n) || r(...n);
+  };
 }
-process.env.NODE_ENV !== "production" && (s.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * The styles you want to apply globally.
-   */
-  styles: o.oneOfType([o.array, o.func, o.number, o.object, o.string, o.bool])
-});
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-  s as default
+  u as default
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package/dist/ui-components.es12.js

@@ -1,132 +1,37 @@
-import { c as X } from "./ui-components.es16.js";
-import { useState as x, useRef as z, useEffect as Y } from "react";
-import { getGenes as Z, getCCREs as D, getLegacyCCREs as _, getICREs as ee, getSNPs as te, getStudys as se } from "./ui-components.es59.js";
-import { isDomain as m, geneResultList as re, ccreResultList as oe, getCoordinates as ce, legacyCcreResultList as ne, icreResultList as ae, snpResultList as le, studyResultList as ie, OmesList as ue, omeResultsList as fe } from "./ui-components.es58.js";
-const me = 3;
-function Le(i, B) {
-  const e = X.c(34);
-  let w;
-  e[0] !== i ? (w = Array.isArray(i) ? i : [i], e[0] = i, e[1] = w) : w = e[1];
-  const h = w, {
-    queries: R,
-    assembly: c,
-    geneVersion: d,
-    limit: u,
-    showiCREFlag: y,
-    debounceMs: U,
-    graphqlUrl: a
-  } = B, L = U === void 0 ? 200 : U;
-  let S;
-  e[2] !== u ? (S = (W) => typeof u == "number" ? u : u?.[W] ?? me, e[2] = u, e[3] = S) : S = e[3];
-  const l = S, [I, V] = x(null), [T, G] = x(!1), [K, p] = x(null), C = z(null), g = z(null);
-  let b;
-  e[4] !== h ? (b = JSON.stringify(h), e[4] = h, e[5] = b) : b = e[5];
-  const q = b;
-  let P;
-  e[6] !== u ? (P = JSON.stringify(u), e[6] = u, e[7] = P) : P = e[7];
-  const v = P;
-  let A;
-  e[8] !== d ? (A = JSON.stringify(d), e[8] = d, e[9] = A) : A = e[9];
-  const F = A;
-  let M;
-  e[10] !== R ? (M = R.join("|"), e[10] = R, e[11] = M) : M = e[11];
-  const J = M;
-  let N;
-  e[12] !== c || e[13] !== L || e[14] !== d || e[15] !== l || e[16] !== a || e[17] !== h || e[18] !== R || e[19] !== y ? (N = () => {
-    C.current && (window.clearTimeout(C.current), C.current = null), g.current && (g.current.abort(), g.current = null);
-    const W = h.filter(de);
-    if (W.length === 0) {
-      V([]), G(!1), p(null);
-      return;
-    }
-    G(!0), p(null), g.current = new AbortController();
-    const f = g.current.signal;
-    return C.current = window.setTimeout(() => {
-      (async () => {
-        try {
-          const E = [], n = (r, t) => {
-            if (!R.includes(r))
-              return !1;
-            const j = /^rs\d+$/i.test(t) && t.toLowerCase() !== "rs1";
-            switch (r) {
-              case "Coordinate":
-                return m(t);
-              case "Gene":
-                return !m(t) && !t.toLowerCase().startsWith(c === "GRCh38" ? "eh38" : "em10") && !j;
-              case "cCRE":
-                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
-              case "Legacy cCRE":
-                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
-              case "iCRE":
-                return !m(t) && c === "GRCh38" && t.toLowerCase().startsWith("eh");
-              case "SNP":
-                return !m(t) && c === "GRCh38" && (["r", "rs"].includes(t) || j);
-              case "Study":
-                return !m(t) && c === "GRCh38";
-              case "Ome":
-                return !m(t) && c === "GRCh38";
-              default:
-                return !1;
-            }
-          };
-          await Promise.all(W.map(async (r) => {
-            const t = [];
-            if (n("Gene", r)) {
-              const s = l("Gene");
-              t.push(Z(r, c, s, d, a, f).then((o) => o ? re(o, s, typeof d == "object") : []));
-            }
-            if (n("cCRE", r)) {
-              const s = l("cCRE");
-              t.push(D(r, c, s, y || !1, a, f).then((o) => o?.data?.cCREAutocompleteQuery ? oe(o.data.cCREAutocompleteQuery, s) : []));
-            }
-            if (n("Coordinate", r) && E.push(...ce(r, c)), n("Legacy cCRE", r)) {
-              const s = l("Legacy cCRE");
-              t.push(_(r, c, a, f).then((o) => o?.data?.ccreMappings ? ne(o.data.ccreMappings, s) : []));
-            }
-            if (n("iCRE", r)) {
-              const s = l("iCRE");
-              t.push(ee(r, s, a, f).then((o) => o?.data?.iCREQuery ? ae(o.data.iCREQuery, s) : []));
-            }
-            if (n("SNP", r)) {
-              const s = l("SNP");
-              t.push(te(r, c, s, a, f).then((o) => o?.data?.snpAutocompleteQuery ? le(o.data.snpAutocompleteQuery, s) : []));
-            }
-            if (n("Study", r)) {
-              const s = l("Study");
-              t.push(se(r, s, a, f).then((o) => o?.data?.getGWASStudiesMetadata ? ie(o.data.getGWASStudiesMetadata, s) : []));
-            }
-            if (n("Ome", r)) {
-              const s = l("Ome"), o = ue.filter(($) => {
-                const k = r.toLowerCase();
-                return $.label.toLowerCase().includes(k) || $.keywords?.some((H) => H.toLowerCase().includes(k));
-              }).slice(0, s);
-              t.push(Promise.resolve(fe(o)));
-            }
-            (await Promise.all(t)).forEach((s) => E.push(...s));
-          })), f.aborted || (V(E), G(!1));
-        } catch (E) {
-          const n = E;
-          f.aborted || (p(n instanceof Error ? n : new Error(String(n))), G(!1));
-        }
-      })();
-    }, L), () => {
-      C.current && (window.clearTimeout(C.current), C.current = null);
-    };
-  }, e[12] = c, e[13] = L, e[14] = d, e[15] = l, e[16] = a, e[17] = h, e[18] = R, e[19] = y, e[20] = N) : N = e[20];
-  let O;
-  e[21] !== c || e[22] !== L || e[23] !== F || e[24] !== a || e[25] !== q || e[26] !== v || e[27] !== J || e[28] !== y ? (O = [q, J, c, v, F, y, L, a], e[21] = c, e[22] = L, e[23] = F, e[24] = a, e[25] = q, e[26] = v, e[27] = J, e[28] = y, e[29] = O) : O = e[29], Y(N, O);
-  let Q;
-  return e[30] !== I || e[31] !== K || e[32] !== T ? (Q = {
-    data: I,
-    loading: T,
-    error: K
-  }, e[30] = I, e[31] = K, e[32] = T, e[33] = Q) : Q = e[33], Q;
-}
-function de(i) {
-  return !!i && i.trim() !== "";
-}
+import { useState as a, useEffect as f } from "react";
+const g = ({
+  assembly: s,
+  skip: e
+}) => {
+  const [c, o] = a(!1), [l, i] = a(!1), [p, u] = a(void 0), r = s === "GRCh38" ? "https://downloads.wenglab.org/human_biosamples_tracks_metadata.json" : "https://downloads.wenglab.org/mouse_biosamples_tracks_metadata.json";
+  return f(() => {
+    e || (async () => {
+      try {
+        o(!0);
+        const t = await fetch(r);
+        if (!t.ok)
+          throw new Error(`Response status: ${t.status}`);
+        const n = (await t.json())?.data?.ccREBiosampleQuery?.biosamples;
+        if (!n)
+          throw new Error("No biosamples present in return data");
+        const m = n.map((d) => ({
+          ...d,
+          assembly: s
+        }));
+        u(m);
+      } catch {
+        i(!0);
+      } finally {
+        o(!1);
+      }
+    })();
+  }, [r, e, s]), {
+    data: p,
+    loading: c,
+    error: l
+  };
+};
 export {
-  me as DEFAULT_LIMIT,
-  Le as useEntityAutocomplete
+  g as useEncodeBiosampleData
 };
 //# sourceMappingURL=ui-components.es12.js.map

package/dist/ui-components.es12.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es12.js","sources":["../src/components/GenomeSearch/useEntityAutocomplete.ts"],"sourcesContent":["import { useEffect, useRef, useState } from \"react\";\nimport { getCCREs, getGenes, getICREs, getLegacyCCREs, getSNPs, getStudys } from \"./queries\";\nimport {\n  ccreResultList,\n  geneResultList,\n  getCoordinates,\n  icreResultList,\n  snpResultList,\n  studyResultList,\n  isDomain,\n  legacyCcreResultList,\n  OmesList,\n  omeResultsList,\n} from \"./utils\";\nimport { GenomeSearchProps, Result, ResultType } from \"./types\";\n\nexport const DEFAULT_LIMIT = 3;\n\ntype HookOptions = {\n  queries: ResultType[];\n  assembly: GenomeSearchProps[\"assembly\"];\n  graphqlUrl: string;\n  geneVersion?: GenomeSearchProps[\"geneVersion\"];\n  limit?: GenomeSearchProps[\"limit\"];\n  showiCREFlag?: boolean;\n  debounceMs?: number;\n};\n\ntype HookResult = {\n  data: Result[] | null;\n  loading: boolean;\n  error: Error | null;\n};\n\n// Accept either a single string or an array of strings. Debounced fetches for each input.\nexport function useEntityAutocomplete(\n  inputsArg: string | string[],\n  options: HookOptions\n): HookResult {\n  const inputs = Array.isArray(inputsArg) ? inputsArg : [inputsArg];\n  const { queries, assembly, geneVersion, limit, showiCREFlag, debounceMs = 200, graphqlUrl } = options;\n\n  const getLimit = (type: ResultType): number =>\n    typeof limit === \"number\" ? limit : limit?.[type] ?? DEFAULT_LIMIT;\n\n  const [data, setData] = useState<Result[] | null>(null);\n  const [loading, setLoading] = useState(false);\n  const [error, setError] = useState<Error | null>(null);\n\n  const timeoutRef = useRef<number | null>(null);\n  const abortControllerRef = useRef<AbortController | null>(null);\n\n  const inputsKey = JSON.stringify(inputs);\n  const limitKey = JSON.stringify(limit);\n  const geneVersionKey = JSON.stringify(geneVersion);\n  const queriesKey = queries.join(\"|\");\n\n  useEffect(() => {\n    // clear any pending timer and abort previous requests\n    if (timeoutRef.current) {\n      window.clearTimeout(timeoutRef.current);\n      timeoutRef.current = null;\n    }\n    if (abortControllerRef.current) {\n      abortControllerRef.current.abort();\n      abortControllerRef.current = null;\n    }\n\n    // if no inputs or only empty strings, clear\n    const activeInputs = inputs.filter((i) => !!i && i.trim() !== \"\");\n    if (activeInputs.length === 0) {\n      setData([]);\n      setLoading(false);\n      setError(null);\n      return;\n    }\n\n    setLoading(true);\n    setError(null);\n\n    // Create a new AbortController for this search request\n    abortControllerRef.current = new AbortController();\n    const abortSignal = abortControllerRef.current.signal;\n\n    timeoutRef.current = window.setTimeout(() => {\n      (async () => {\n        try {\n          const aggregated: Result[] = [];\n\n          const shouldFetch = (type: ResultType, input: string): boolean => {\n            if (!queries.includes(type)) return false;\n\n            const isSnpRsId = /^rs\\d+$/i.test(input) && input.toLowerCase() !== \"rs1\";\n\n            switch (type) {\n              case \"Coordinate\":\n                return isDomain(input);\n              case \"Gene\":\n                return !isDomain(input) && !input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh38\" : \"em10\") && !isSnpRsId;\n              case \"cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"Legacy cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"iCRE\":\n                return !isDomain(input) && assembly === \"GRCh38\" && input.toLowerCase().startsWith(\"eh\");\n              case \"SNP\":\n                return !isDomain(input) && assembly === \"GRCh38\" && ([\"r\", \"rs\"].includes(input) || isSnpRsId);\n              case \"Study\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              case \"Ome\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              default:\n                return false;\n            }\n          };\n\n          await Promise.all(\n            activeInputs.map(async (input) => {\n              // array for fetch promises (so that we can Promise.all them in parallel)\n 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package/dist/ui-components.es120.js

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-const l = {
-  theme: void 0
-};
-function h(u) {
-  let m, n;
+import { j as n } from "./ui-components.es16.js";
+import e from "./ui-components.es221.js";
+import p from "./ui-components.es222.js";
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-    let e = m;
-    return (e === void 0 || t.theme !== n) && (l.theme = t.theme, e = a(u(l)), m = e, n = t.theme), e;
+    return (
+      // Pigment CSS `globalCss` support callback with theme inside an object but `GlobalStyles` support theme as a callback value.
+      /* @__PURE__ */ n.jsx(p, {
+        styles: typeof r == "function" ? (o) => r({
+          theme: o,
+          ...t
+        }) : r
+      })
+    );
   };
 }
+function a() {
+  return e;
+}
 export {
-  h as default
+  x as globalCss,
+  a as internal_createExtendSxProp
 };
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package/dist/ui-components.es120.js.map

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package/dist/ui-components.es121.js

@@ -1,5 +1,5 @@
-import i from "./ui-components.es95.js";
-import r from "./ui-components.es96.js";
+import i from "./ui-components.es106.js";
+import r from "./ui-components.es107.js";
 function a(t) {
   return i("MuiTypography", t);
 }

package/dist/ui-components.es121.js.map

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