@weng-lab/ui-components 3.0.1 → 3.1.1

package/dist/ui-components.es10.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es10.js","sources":["../src/components/BiosampleTable/columns.tsx"],"sourcesContent":["import {\n  GridColDef,\n  GridComparatorFn,\n  gridRowIdSelector,\n  gridRowNodeSelector,\n  gridRowSelector,\n  isAutogeneratedRow,\n} from \"@mui/x-data-grid-premium\";\nimport { AssayWheel } from \"./AssayWheel\";\nimport { CcreAssay, EncodeBiosample } from \"./types\";\nimport { DownloadButton } from \"./DownloadButton\";\nimport { AggregateDownloadButton, getAvailableFiles } from \"./AggregateDownload\";\nimport { capitalize, Stack, Tooltip } from \"@mui/material\";\nimport { Check, InfoOutline } from \"@mui/icons-material\";\n\n/**\n * @todo at some point, instead of checking for is rowNode.type === \"group\", can use isAutogeneratedRow instead\n */\n\nexport const ontologyCol: GridColDef<EncodeBiosample> = {\n  field: \"ontology\",\n  headerName: \"Organ/Tissue\",\n  type: \"singleSelect\",\n  valueOptions: [\n    \"adipose\",\n    \"adrenal gland\",\n    \"blood\",\n    \"blood vessel\",\n    \"bone\",\n    \"bone marrow\",\n    \"brain\",\n    \"breast\",\n    \"connective tissue\",\n    \"embryo\",\n    \"epithelium\",\n    \"esophagus\",\n    \"eye\",\n    \"fallopian tube\",\n    \"gallbladder\",\n    \"heart\",\n    \"kidney\",\n    \"large intestine\",\n    \"limb\",\n    \"liver\",\n    \"lung\",\n    \"lymphoid tissue\",\n    \"mouth\",\n    \"muscle\",\n    \"nerve\",\n    \"nose\",\n    \"ovary\",\n    \"pancreas\",\n    \"paraythroid gland\",\n    \"penis\",\n    \"placenta\",\n    \"prostate\",\n    \"skin\",\n    \"small intestine\",\n    \"spinal cord\",\n    \"spleen\",\n    \"stomach\",\n    \"testis\",\n    \"thymus\",\n    \"thyroid\",\n    \"urinary bladder\",\n    \"uterus\",\n    \"vagina\",\n  ],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const displayNameCol: GridColDef<EncodeBiosample> = {\n  field: \"displayname\",\n  headerName: \"Biosample\",\n  valueFormatter: (value) => value && capitalize(value),\n  maxWidth: 300,\n};\n\nexport const sampleTypeCol: GridColDef<EncodeBiosample> = {\n  field: \"sampleType\",\n  headerName: \"Sample Type\",\n  type: \"singleSelect\",\n  valueOptions: [\"tissue\", \"primary cell\", \"cell line\", \"in vitro differentiated cells\", \"organoid\"],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const lifeStageCol: GridColDef<EncodeBiosample> = {\n  field: \"lifeStage\",\n  headerName: \"Life Stage\",\n  type: \"singleSelect\",\n  valueOptions: [\"adult\", \"embryonic\"],\n  valueFormatter: (value) => value && capitalize(value),\n};\n\nexport const assaysCol: GridColDef<EncodeBiosample> = {\n  field: \"assays\",\n  headerName: \"Assays\",\n  valueGetter: (_, row) => {\n    const availableAssays = [];\n    if (row.dnase_experiment_accession) availableAssays.push(\"DNase\");\n    if (row.atac_experiment_accession) availableAssays.push(\"ATAC\");\n    if (row.h3k4me3_experiment_accession) availableAssays.push(\"H3K4me3\");\n    if (row.h3k27ac_experiment_accession) availableAssays.push(\"H3K27ac\");\n    if (row.ctcf_experiment_accession) availableAssays.push(\"CTCF\");\n    return availableAssays.join(\",\");\n  },\n  sortComparator: (v1, v2) => {\n    const count1 = v1.split(\",\").filter((s: string) => s.length > 0).length;\n    const count2 = v2.split(\",\").filter((s: string) => s.length > 0).length;\n    return count1 - count2;\n  },\n  renderCell: (params) => {\n    if (params.rowNode.type === \"group\") return null;\n    const row = params.row;\n    return (\n      <div onClick={(e) => e.stopPropagation()}>\n        <AssayWheel\n          row={{\n            dnase: row.dnase_experiment_accession,\n            atac: row.atac_experiment_accession,\n            h3k4me3: row.h3k4me3_experiment_accession,\n            h3k27ac: row.h3k27ac_experiment_accession,\n            ctcf: row.ctcf_experiment_accession,\n          }}\n        />\n      </div>\n    );\n  },\n  groupable: false,\n};\n\n// -- Collection Column Helpers --\n\nconst collections = [\"Core\", \"Partial\", \"Ancillary\"] as const;\n\n//Handles the two experiments that have unprocessed H3K4me3 samples which have \"NA\" values in file\n//GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\nconst fileExists = (fileID: string | null): Boolean => {\n  return !!fileID && fileID !== \"NA\"\n}\n\nconst getCollectionForSample = (sample: EncodeBiosample): (typeof collections)[number] | null => {\n  const filesAvailable: Record<CcreAssay, Boolean> = {\n    dnase: fileExists(sample.dnase_file_accession),\n    h3k4me3: fileExists(sample.h3k4me3_file_accession),\n    h3k27ac: fileExists(sample.h3k27ac_file_accession),\n    ctcf: fileExists(sample.ctcf_file_accession),\n    atac: fileExists(sample.atac_file_accession),\n  };\n  if (!Object.values(filesAvailable).includes(true)) return null; // True for grouping rows and GM12866_ENCDO000ABQ\n  let collection: (typeof collections)[number] = \"Ancillary\";\n  if (filesAvailable.dnase) {\n    collection = \"Partial\";\n    if (filesAvailable.ctcf && filesAvailable.h3k4me3 && filesAvailable.h3k27ac) {\n      collection = \"Core\";\n    }\n  }\n  return collection;\n};\n\n// define this to properly sort grouping rows and GM12866_ENCDO000ABQ\nconst sortOrder = [...collections, null]\n\nexport const collectionCol: GridColDef<EncodeBiosample> = {\n  field: \"collection\",\n  headerName: \"Collection\",\n  type: \"singleSelect\",\n  valueOptions: [...collections],\n  valueGetter: (_, row) => getCollectionForSample(row),\n  renderCell: (params) => {\n    const row = params.row\n    if (\n      (row.dnase_experiment_accession && !fileExists(row.dnase_file_accession)) ||\n      (row.h3k4me3_experiment_accession && !fileExists(row.h3k4me3_file_accession)) ||\n      (row.h3k27ac_experiment_accession && !fileExists(row.h3k27ac_file_accession)) ||\n      (row.ctcf_experiment_accession && !fileExists(row.ctcf_file_accession))\n    )\n      return (\n        <Tooltip title=\"This sample's H3K4me3 experiment data was not run through the ENCODE pipeline. This assay is ignored when placing this sample in its given collection\">\n          <Stack direction={\"row\"} alignItems={\"center\"}>\n            {row.name === \"GM12866_ENCDO000ABQ\" ? \"NA\" : getCollectionForSample(row)}\n            <InfoOutline fontSize=\"small\" />\n          </Stack>\n        </Tooltip>\n      );\n    else return getCollectionForSample(row);\n  },\n  sortComparator: (v1, v2) => sortOrder.indexOf(v1) - sortOrder.indexOf(v2),\n};\n\n//ENCODE Experiment Accession (plain text)\nexport const dnaseExpCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_experiment_accession\",\n  headerName: \"DNase Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k4me3ExpCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_experiment_accession\",\n  headerName: \"H3K4me3 Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k27acExpCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_experiment_accession\",\n  headerName: \"H3K27ac Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const ctcfExpCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_experiment_accession\",\n  headerName: \"CTCF Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const atacExpCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_experiment_accession\",\n  headerName: \"ATAC Exp. ID\",\n  sortable: false,\n  groupable: false,\n};\n\n//ENCODE File ID (plain text)\nexport const dnaseFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_file_accession\",\n  headerName: \"DNase File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k4me3FileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_file_accession\",\n  headerName: \"H3K4me3 File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const h3k27acFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_file_accession\",\n  headerName: \"H3K27ac File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const ctcfFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_file_accession\",\n  headerName: \"CTCF File ID\",\n  sortable: false,\n  groupable: false,\n};\nexport const atacFileIdCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_file_accession\",\n  headerName: \"ATAC File ID\",\n  sortable: false,\n  groupable: false,\n};\n\nexport const dnaseZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"dnaseZ\",\n  headerName: \"DNase Z-scores\",\n  valueGetter: (_, row) =>\n    row.dnase_experiment_accession && row.dnase_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.dnase_experiment_accession}-${row.dnase_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download DNase z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"DNase\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k4me3ZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3Z\",\n  headerName: \"H3K4me3 Z-scores\",\n  valueGetter: (_, row) =>\n    //check if file exists to handle the two samples with unprocessed h3k4me3 experiments: GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA\n    row.h3k4me3_experiment_accession && fileExists(row.h3k4me3_file_accession)\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k4me3_experiment_accession}-${row.h3k4me3_file_accession}.tsv`\n      : null,\n  renderCell: (params) => {\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\n      return (\n        <DownloadButton\n          disabled\n          message={() =>\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus z-scores are not available\"\n          }\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n    else if (!(params.rowNode.type === \"group\") && params.value)\n      return (\n        <DownloadButton\n          message={(fileSize) => `Download H3K4me3 z-score by cCRE (.tsv) - ${fileSize}`}\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k27acZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27acZ\",\n  headerName: \"H3K27ac Z-scores\",\n  valueGetter: (_, row) =>\n    row.h3k27ac_experiment_accession && row.h3k27ac_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.h3k27ac_experiment_accession}-${row.h3k27ac_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download H3K27ac z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"H3K27ac\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ctcfZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcfZ\",\n  headerName: \"CTCF Z-scores\",\n  valueGetter: (_, row) =>\n    row.ctcf_experiment_accession && row.ctcf_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.ctcf_experiment_accession}-${row.ctcf_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download CTCF z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"CTCF\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const atacZscoreUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"atacZ\",\n  headerName: \"ATAC Z-scores\",\n  valueGetter: (_, row) =>\n    row.atac_experiment_accession && row.atac_file_accession\n      ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${row.atac_experiment_accession}-${row.atac_file_accession}.tsv`\n      : null,\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ATAC z-score by cCRE (.tsv) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ATAC\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const dnaseSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"dnase_signal_url\",\n  headerName: \"DNase Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download DNase Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"DNase\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k4me3SignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k4me3_signal_url\",\n  headerName: \"H3K4me3 Signal\",\n  valueGetter: (value, row) => (row.h3k4me3_file_accession === \"NA\" ? null : value),\n  renderCell: (params) => {\n    if ([\"GM12866_ENCDO000ABQ\", \"neural_crest_cell_ENCDO222AAA\"].includes(params.row.name))\n      return (\n        <DownloadButton\n          disabled\n          message={() =>\n            \"This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus the signal file is not available\"\n          }\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n    else if (!(params.rowNode.type === \"group\") && params.value)\n      return (\n        <DownloadButton\n          message={(fileSize) => `Download H3K4me3 Signal (.bigWig) - ${fileSize}`}\n          url={params.value}\n          displayName={params.row.displayname}\n          assay=\"H3K4me3\"\n          ontology={params.row.ontology}\n        />\n      );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const h3k27acSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"h3k27ac_signal_url\",\n  headerName: \"H3K27ac Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download H3K27ac Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"H3K27ac\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ctcfSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"ctcf_signal_url\",\n  headerName: \"CTCF Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download CTCF Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"CTCF\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const atacSignalUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"atac_signal_url\",\n  headerName: \"ATAC Signal\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ATAC Signal (.bigWig) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ATAC\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const chromHmmUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"chromhmm_url\",\n  headerName: \"ChromHMM States\",\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" &&\n    params.value && (\n      <DownloadButton\n        message={(fileSize) => `Download ChromHMM States (.bigBed) - ${fileSize}`}\n        url={params.value}\n        displayName={params.row.displayname}\n        assay=\"ChromHMM\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const ccreBedUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"bedurl\",\n  headerName: \"cCREs (.bed)\",\n  align: \"center\",\n  valueGetter: (_, row, __, apiRef) => {\n    if (isAutogeneratedRow(row)) {\n      const id = gridRowIdSelector(apiRef, row);\n      const rowNode = gridRowNodeSelector(apiRef, id);\n      const isGroupingByOntology = rowNode.type === \"group\" && rowNode.groupingField === \"ontology\";\n      if (isGroupingByOntology && typeof rowNode.groupingKey === \"string\") {\n        // Check the first child row's assembly\n        const childRowIds = rowNode.children;\n        if (childRowIds && childRowIds.length > 0) {\n          const firstChildData = gridRowSelector(apiRef, childRowIds[0]);\n          if (firstChildData?.assembly === \"GRCh38\") {\n            return getAvailableFiles(rowNode.groupingKey)\n              .map((x) => `https://downloads.wenglab.org/${x.filename}`)\n              .join(\",\");\n          }\n        }\n      }\n      return null;\n    }\n    const signalIDs = [\n      row.dnase_file_accession,\n      row.h3k4me3_file_accession,\n      row.h3k27ac_file_accession,\n      row.ctcf_file_accession,\n    ].filter((id) => id !== null && id !== undefined && id !== \"NA\");\n    if (!signalIDs.length) return null // aka is ATAC-only\n    return `https://downloads.wenglab.org/Registry-V4/${signalIDs.join(\"_\")}.bed`;\n  },\n  renderCell: (params) => {\n    if (params.rowNode.type === \"group\") {\n      if (params.rowNode.groupingField === \"ontology\" && params.value) {\n        const ontology = (params.rowNode.groupingKey as string) ?? \"\";\n        return <AggregateDownloadButton ontology={ontology} />;\n      }\n      return null;\n    }\n    return (\n      <DownloadButton\n        message={(fileSize) =>\n          params.value ? `Download cCREs (.bed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\n        }\n        url={params.value}\n        disabled={!params.value} //aka is ATAC-only\n        displayName={params.row.displayname}\n        assay=\"cCREs\"\n        ontology={params.row.ontology}\n      />\n    );\n  },\n  groupable: false,\n  sortable: false,\n};\n\nexport const ccreBigBedUrlCol: GridColDef<EncodeBiosample> = {\n  field: \"bigbedurl\",\n  headerName: \"cCREs (.bigBed)\",\n  align: 'center',\n  valueGetter: (value: string, row) => {\n    if (row.name === \"GM12866_ENCDO000ABQ\") return null //This sample has no cCREs file\n    if (row.name === \"neural_crest_cell_ENCDO222AAA\") return value.replaceAll('_NA_', '_') //The url in file includes \"NA\" H3K4me3 file ID\n    else return value\n  },\n  renderCell: (params) =>\n    params.rowNode.type !== \"group\" && (\n      <DownloadButton\n        message={(fileSize) =>\n          params.value ? `Download cCREs (.bigBed) - ${fileSize}` : \"cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data\"\n        }\n        url={params.value}\n        disabled={!params.value} //aka is ATAC-only\n        displayName={params.row.displayname}\n        assay=\"cCREs\"\n        ontology={params.row.ontology}\n      />\n    ),\n  groupable: false,\n  sortable: false,\n};\n\nexport const rnaSeqCheckCol: GridColDef<EncodeBiosample> = {\n  field: \"rnaSeq\",\n  headerName: \"Has RNA Seq\",\n  type: \"boolean\",\n  valueGetter: (_, row) => (isAutogeneratedRow(row) ? null : !!row?.rna_seq_tracks?.length),\n  renderCell: (params) => {\n    if (params.value) {\n      return <Check />;\n    } else return null;\n  },\n};\n\nexport const columns: GridColDef<EncodeBiosample>[] = [\n  displayNameCol,\n  assaysCol,\n  ontologyCol,\n  sampleTypeCol,\n  lifeStageCol,\n  collectionCol,\n  ccreBedUrlCol,\n  ccreBigBedUrlCol,\n  dnaseExpCol,\n  dnaseFileIdCol,\n  dnaseZscoreUrlCol,\n  dnaseSignalUrlCol,\n  atacExpCol,\n  atacFileIdCol,\n  atacZscoreUrlCol,\n  atacSignalUrlCol,\n  h3k4me3ExpCol,\n  h3k4me3FileIdCol,\n  h3k4me3ZscoreUrlCol,\n  h3k4me3SignalUrlCol,\n  h3k27acExpCol,\n  h3k27acFileIdCol,\n  h3k27acZscoreUrlCol,\n  h3k27acSignalUrlCol,\n  ctcfExpCol,\n  ctcfFileIdCol,\n  ctcfZscoreUrlCol,\n  ctcfSignalUrlCol,\n  chromHmmUrlCol,\n  rnaSeqCheckCol,\n];\n\n/**\n * useful for resetting visible columns by spreading this then overriding with visible cols\n */\nexport const allColsHidden = {\n  displayname: false,\n  assays: false,\n  ontology: false,\n  sampleType: false,\n  lifeStage: false,\n  collection: false,\n  bedurl: false,\n  bigbedurl: false,\n  dnase_experiment_accession: false,\n  dnase_file_accession: false,\n  dnaseZ: false,\n  dnase_signal_url: false,\n  atac_experiment_accession: false,\n  atac_file_accession: false,\n  atacZ: false,\n  atac_signal_url: false,\n  h3k4me3_experiment_accession: false,\n  h3k4me3_file_accession: false,\n  h3k4me3Z: false,\n  h3k4me3_signal_url: false,\n  h3k27ac_experiment_accession: false,\n  h3k27ac_file_accession: false,\n  h3k27acZ: false,\n  h3k27ac_signal_url: false,\n  ctcf_experiment_accession: false,\n  ctcf_file_accession: false,\n  ctcfZ: false,\n  ctcf_signal_url: false,\n  chromhmm_url: false,\n  rnaSeq: 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package/dist/ui-components.es100.js

@@ -1,18 +1,275 @@
-import * as r from "react";
-import { j as c } from "./ui-components.es15.js";
-import n from "./ui-components.es183.js";
-function s(t, e) {
-  function o(i, m) {
-    return /* @__PURE__ */ c.jsx(n, {
-      "data-testid": process.env.NODE_ENV !== "production" ? `${e}Icon` : void 0,
-      ref: m,
-      ...i,
-      children: t
-    });
+import * as b from "react";
+import r from "./ui-components.es91.js";
+import { clsx as h } from "./ui-components.es92.js";
+import v from "./ui-components.es159.js";
+import k from "./ui-components.es161.js";
+import y from "./ui-components.es146.js";
+import z from "./ui-components.es110.js";
+import { getInputLabelUtilityClasses as C } from "./ui-components.es286.js";
+import { j as O } from "./ui-components.es16.js";
+import { useDefaultProps as w } from "./ui-components.es95.js";
+import g from "./ui-components.es118.js";
+import S from "./ui-components.es103.js";
+import I from "./ui-components.es56.js";
+import L from "./ui-components.es287.js";
+import E from "./ui-components.es288.js";
+const T = (e) => {
+  const {
+    classes: o,
+    formControl: s,
+    size: t,
+    shrink: l,
+    disableAnimation: c,
+    variant: p,
+    required: d
+  } = e, m = {
+    root: ["root", s && "formControl", !c && "animated", l && "shrink", t && t !== "medium" && `size${g(t)}`, p],
+    asterisk: [d && "asterisk"]
+  }, f = S(m, C, o);
+  return {
+    ...o,
+    // forward the focused, disabled, etc. classes to the FormLabel
+    ...f
+  };
+}, j = I(L, {
+  shouldForwardProp: (e) => y(e) || e === "classes",
+  name: "MuiInputLabel",
+  slot: "Root",
+  overridesResolver: (e, o) => {
+    const {
+      ownerState: s
+    } = e;
+    return [{
+      [`& .${E.asterisk}`]: o.asterisk
+    }, o.root, s.formControl && o.formControl, s.size === "small" && o.sizeSmall, s.shrink && o.shrink, !s.disableAnimation && o.animated, s.focused && o.focused, o[s.variant]];
   }
-  return process.env.NODE_ENV !== "production" && (o.displayName = `${e}Icon`), o.muiName = n.muiName, /* @__PURE__ */ r.memo(/* @__PURE__ */ r.forwardRef(o));
-}
+})(z(({
+  theme: e
+}) => ({
+  display: "block",
+  transformOrigin: "top left",
+  whiteSpace: "nowrap",
+  overflow: "hidden",
+  textOverflow: "ellipsis",
+  maxWidth: "100%",
+  variants: [{
+    props: ({
+      ownerState: o
+    }) => o.formControl,
+    style: {
+      position: "absolute",
+      left: 0,
+      top: 0,
+      // slight alteration to spec spacing to match visual spec result
+      transform: "translate(0, 20px) scale(1)"
+    }
+  }, {
+    props: {
+      size: "small"
+    },
+    style: {
+      // Compensation for the `Input.inputSizeSmall` style.
+      transform: "translate(0, 17px) scale(1)"
+    }
+  }, {
+    props: ({
+      ownerState: o
+    }) => o.shrink,
+    style: {
+      transform: "translate(0, -1.5px) scale(0.75)",
+      transformOrigin: "top left",
+      maxWidth: "133%"
+    }
+  }, {
+    props: ({
+      ownerState: o
+    }) => !o.disableAnimation,
+    style: {
+      transition: e.transitions.create(["color", "transform", "max-width"], {
+        duration: e.transitions.duration.shorter,
+        easing: e.transitions.easing.easeOut
+      })
+    }
+  }, {
+    props: {
+      variant: "filled"
+    },
+    style: {
+      // Chrome's autofill feature gives the input field a yellow background.
+      // Since the input field is behind the label in the HTML tree,
+      // the input field is drawn last and hides the label with an opaque background color.
+      // zIndex: 1 will raise the label above opaque background-colors of input.
+      zIndex: 1,
+      pointerEvents: "none",
+      transform: "translate(12px, 16px) scale(1)",
+      maxWidth: "calc(100% - 24px)"
+    }
+  }, {
+    props: {
+      variant: "filled",
+      size: "small"
+    },
+    style: {
+      transform: "translate(12px, 13px) scale(1)"
+    }
+  }, {
+    props: ({
+      variant: o,
+      ownerState: s
+    }) => o === "filled" && s.shrink,
+    style: {
+      userSelect: "none",
+      pointerEvents: "auto",
+      transform: "translate(12px, 7px) scale(0.75)",
+      maxWidth: "calc(133% - 24px)"
+    }
+  }, {
+    props: ({
+      variant: o,
+      ownerState: s,
+      size: t
+    }) => o === "filled" && s.shrink && t === "small",
+    style: {
+      transform: "translate(12px, 4px) scale(0.75)"
+    }
+  }, {
+    props: {
+      variant: "outlined"
+    },
+    style: {
+      // see comment above on filled.zIndex
+      zIndex: 1,
+      pointerEvents: "none",
+      transform: "translate(14px, 16px) scale(1)",
+      maxWidth: "calc(100% - 24px)"
+    }
+  }, {
+    props: {
+      variant: "outlined",
+      size: "small"
+    },
+    style: {
+      transform: "translate(14px, 9px) scale(1)"
+    }
+  }, {
+    props: ({
+      variant: o,
+      ownerState: s
+    }) => o === "outlined" && s.shrink,
+    style: {
+      userSelect: "none",
+      pointerEvents: "auto",
+      // Theoretically, we should have (8+5)*2/0.75 = 34px
+      // but it feels a better when it bleeds a bit on the left, so 32px.
+      maxWidth: "calc(133% - 32px)",
+      transform: "translate(14px, -9px) scale(0.75)"
+    }
+  }]
+}))), R = /* @__PURE__ */ b.forwardRef(function(o, s) {
+  const t = w({
+    name: "MuiInputLabel",
+    props: o
+  }), {
+    disableAnimation: l = !1,
+    margin: c,
+    shrink: p,
+    variant: d,
+    className: m,
+    ...f
+  } = t, a = k();
+  let n = p;
+  typeof n > "u" && a && (n = a.filled || a.focused || a.adornedStart);
+  const i = v({
+    props: t,
+    muiFormControl: a,
+    states: ["size", "variant", "required", "focused"]
+  }), u = {
+    ...t,
+    disableAnimation: l,
+    formControl: a,
+    shrink: n,
+    size: i.size,
+    variant: i.variant,
+    required: i.required,
+    focused: i.focused
+  }, x = T(u);
+  return /* @__PURE__ */ O.jsx(j, {
+    "data-shrink": n,
+    ref: s,
+    className: h(x.root, m),
+    ...f,
+    ownerState: u,
+    classes: x
+  });
+});
+process.env.NODE_ENV !== "production" && (R.propTypes = {
+  // ┌────────────────────────────── Warning ──────────────────────────────┐
+  // │ These PropTypes are generated from the TypeScript type definitions. │
+  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
+  // └─────────────────────────────────────────────────────────────────────┘
+  /**
+   * The content of the component.
+   */
+  children: r.node,
+  /**
+   * Override or extend the styles applied to the component.
+   */
+  classes: r.object,
+  /**
+   * @ignore
+   */
+  className: r.string,
+  /**
+   * The color of the component.
+   * It supports both default and custom theme colors, which can be added as shown in the
+   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).
+   */
+  color: r.oneOfType([r.oneOf(["error", "info", "primary", "secondary", "success", "warning"]), r.string]),
+  /**
+   * If `true`, the transition animation is disabled.
+   * @default false
+   */
+  disableAnimation: r.bool,
+  /**
+   * If `true`, the component is disabled.
+   */
+  disabled: r.bool,
+  /**
+   * If `true`, the label is displayed in an error state.
+   */
+  error: r.bool,
+  /**
+   * If `true`, the `input` of this label is focused.
+   */
+  focused: r.bool,
+  /**
+   * If `dense`, will adjust vertical spacing. This is normally obtained via context from
+   * FormControl.
+   */
+  margin: r.oneOf(["dense"]),
+  /**
+   * if `true`, the label will indicate that the `input` is required.
+   */
+  required: r.bool,
+  /**
+   * If `true`, the label is shrunk.
+   */
+  shrink: r.bool,
+  /**
+   * The size of the component.
+   * @default 'medium'
+   */
+  size: r.oneOfType([r.oneOf(["medium", "small"]), r.string]),
+  /**
+   * The system prop that allows defining system overrides as well as additional CSS styles.
+   */
+  sx: r.oneOfType([r.arrayOf(r.oneOfType([r.func, r.object, r.bool])), r.func, r.object]),
+  /**
+   * The variant to use.
+   */
+  variant: r.oneOf(["filled", "outlined", "standard"])
+});
 export {
-  s as default
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package/dist/ui-components.es101.js

@@ -1,18 +1,180 @@
-import { __module as r } from "./ui-components.es102.js";
-import { __require as s } from "./ui-components.es103.js";
-import { __require as t } from "./ui-components.es104.js";
-import { __require as p } from "./ui-components.es105.js";
-var e;
-function q() {
-  if (e) return r.exports;
-  if (e = 1, process.env.NODE_ENV !== "production") {
-    var o = s(), i = !0;
-    r.exports = /* @__PURE__ */ t()(o.isElement, i);
-  } else
-    r.exports = /* @__PURE__ */ p()();
-  return r.exports;
-}
+import * as y from "react";
+import e from "./ui-components.es91.js";
+import { clsx as z } from "./ui-components.es92.js";
+import F from "./ui-components.es159.js";
+import R from "./ui-components.es161.js";
+import j from "./ui-components.es110.js";
+import f, { getFormHelperTextUtilityClasses as q } from "./ui-components.es293.js";
+import { j as u } from "./ui-components.es16.js";
+import { useDefaultProps as C } from "./ui-components.es95.js";
+import x from "./ui-components.es118.js";
+import H from "./ui-components.es103.js";
+import O from "./ui-components.es56.js";
+var b;
+const N = (r) => {
+  const {
+    classes: o,
+    contained: s,
+    size: i,
+    disabled: a,
+    error: l,
+    filled: n,
+    focused: p,
+    required: c
+  } = r, m = {
+    root: ["root", a && "disabled", l && "error", i && `size${x(i)}`, s && "contained", p && "focused", n && "filled", c && "required"]
+  };
+  return H(m, q, o);
+}, w = O("p", {
+  name: "MuiFormHelperText",
+  slot: "Root",
+  overridesResolver: (r, o) => {
+    const {
+      ownerState: s
+    } = r;
+    return [o.root, s.size && o[`size${x(s.size)}`], s.contained && o.contained, s.filled && o.filled];
+  }
+})(j(({
+  theme: r
+}) => ({
+  color: (r.vars || r).palette.text.secondary,
+  ...r.typography.caption,
+  textAlign: "left",
+  marginTop: 3,
+  marginRight: 0,
+  marginBottom: 0,
+  marginLeft: 0,
+  [`&.${f.disabled}`]: {
+    color: (r.vars || r).palette.text.disabled
+  },
+  [`&.${f.error}`]: {
+    color: (r.vars || r).palette.error.main
+  },
+  variants: [{
+    props: {
+      size: "small"
+    },
+    style: {
+      marginTop: 4
+    }
+  }, {
+    props: ({
+      ownerState: o
+    }) => o.contained,
+    style: {
+      marginLeft: 14,
+      marginRight: 14
+    }
+  }]
+}))), S = /* @__PURE__ */ y.forwardRef(function(o, s) {
+  const i = C({
+    props: o,
+    name: "MuiFormHelperText"
+  }), {
+    children: a,
+    className: l,
+    component: n = "p",
+    disabled: p,
+    error: c,
+    filled: m,
+    focused: h,
+    margin: $,
+    required: E,
+    variant: B,
+    ...g
+  } = i, v = R(), t = F({
+    props: i,
+    muiFormControl: v,
+    states: ["variant", "size", "disabled", "error", "filled", "focused", "required"]
+  }), d = {
+    ...i,
+    component: n,
+    contained: t.variant === "filled" || t.variant === "outlined",
+    variant: t.variant,
+    size: t.size,
+    disabled: t.disabled,
+    error: t.error,
+    filled: t.filled,
+    focused: t.focused,
+    required: t.required
+  };
+  delete d.ownerState;
+  const T = N(d);
+  return /* @__PURE__ */ u.jsx(w, {
+    as: n,
+    className: z(T.root, l),
+    ref: s,
+    ...g,
+    ownerState: d,
+    children: a === " " ? (
+      // notranslate needed while Google Translate will not fix zero-width space issue
+      b || (b = /* @__PURE__ */ u.jsx("span", {
+        className: "notranslate",
+        "aria-hidden": !0,
+        children: "​"
+      }))
+    ) : a
+  });
+});
+process.env.NODE_ENV !== "production" && (S.propTypes = {
+  // ┌────────────────────────────── Warning ──────────────────────────────┐
+  // │ These PropTypes are generated from the TypeScript type definitions. │
+  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
+  // └─────────────────────────────────────────────────────────────────────┘
+  /**
+   * The content of the component.
+   *
+   * If `' '` is provided, the component reserves one line height for displaying a future message.
+   */
+  children: e.node,
+  /**
+   * Override or extend the styles applied to the component.
+   */
+  classes: e.object,
+  /**
+   * @ignore
+   */
+  className: e.string,
+  /**
+   * The component used for the root node.
+   * Either a string to use a HTML element or a component.
+   */
+  component: e.elementType,
+  /**
+   * If `true`, the helper text should be displayed in a disabled state.
+   */
+  disabled: e.bool,
+  /**
+   * If `true`, helper text should be displayed in an error state.
+   */
+  error: e.bool,
+  /**
+   * If `true`, the helper text should use filled classes key.
+   */
+  filled: e.bool,
+  /**
+   * If `true`, the helper text should use focused classes key.
+   */
+  focused: e.bool,
+  /**
+   * If `dense`, will adjust vertical spacing. This is normally obtained via context from
+   * FormControl.
+   */
+  margin: e.oneOf(["dense"]),
+  /**
+   * If `true`, the helper text should use required classes key.
+   */
+  required: e.bool,
+  /**
+   * The system prop that allows defining system overrides as well as additional CSS styles.
+   */
+  sx: e.oneOfType([e.arrayOf(e.oneOfType([e.func, e.object, e.bool])), e.func, e.object]),
+  /**
+   * The variant to use.
+   */
+  variant: e.oneOfType([e.oneOf(["filled", "outlined", "standard"]), e.string])
+});
 export {
-  q as __require
+  S as default
 };
 //# sourceMappingURL=ui-components.es101.js.map