@weng-lab/ui-components 3.0.1 → 3.1.0

package/dist/ui-components.es112.js.map

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package/dist/ui-components.es113.js

@@ -1,27 +1,10 @@
-import i from "./ui-components.es261.js";
-import a from "./ui-components.es262.js";
-import P from "./ui-components.es171.js";
-import S from "./ui-components.es263.js";
-function x(o) {
-  const {
-    elementType: t,
-    externalSlotProps: p,
-    ownerState: e,
-    skipResolvingSlotProps: s = !1,
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-    externalSlotProps: r
-  }), m = P(f, r?.ref, o.additionalProps?.ref);
-  return S(t, {
-    ...l,
-    ref: m
-  }, e);
+import i from "./ui-components.es110.js";
+import r from "./ui-components.es111.js";
+function a(t) {
+  return i("MuiTypography", t);
 }
+r("MuiTypography", ["root", "h1", "h2", "h3", "h4", "h5", "h6", "subtitle1", "subtitle2", "body1", "body2", "inherit", "button", "caption", "overline", "alignLeft", "alignRight", "alignCenter", "alignJustify", "noWrap", "gutterBottom", "paragraph"]);
 export {
-  x as default
+  a as getTypographyUtilityClass
 };
 //# sourceMappingURL=ui-components.es113.js.map

package/dist/ui-components.es113.js.map

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package/dist/ui-components.es114.js

@@ -1,7 +1,5 @@
-function n(t) {
-  return typeof t == "string";
-}
+const a = "$$material";
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-  n as default
+  a as default
 };
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package/dist/ui-components.es114.js.map

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package/dist/ui-components.es115.js

@@ -1,10 +1,6 @@
-import e from "./ui-components.es154.js";
-function o(r) {
-  if (typeof r != "string")
-    throw new Error(process.env.NODE_ENV !== "production" ? "MUI: `capitalize(string)` expects a string argument." : e(7));
-  return r.charAt(0).toUpperCase() + r.slice(1);
-}
+import o from "./ui-components.es111.js";
+const t = o("MuiBox", ["root"]);
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package/dist/ui-components.es115.js.map

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package/dist/ui-components.es116.js

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+import { clsx as l } from "./ui-components.es96.js";
+import h from "./ui-components.es272.js";
+import { j as p } from "./ui-components.es16.js";
+import B from "./ui-components.es211.js";
+import N from "./ui-components.es200.js";
+import R from "./ui-components.es223.js";
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+    defaultTheme: a,
+    defaultClassName: r = "MuiBox-root",
+    generateClassName: s
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+    });
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package/dist/ui-components.es117.js

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-import p from "./ui-components.es119.js";
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-        styles: typeof r == "function" ? (o) => r({
-          theme: o,
-          ...t
-        }) : r
-      })
-    );
+const t = (e) => e, a = () => {
+  let e = t;
+  return {
+    configure(r) {
+      e = r;
+    },
+    generate(r) {
+      return e(r);
+    },
+    reset() {
+      e = t;
+    }
   };
-}
-function a() {
-  return e;
-}
+}, n = a();
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-  x as globalCss,
-  a as internal_createExtendSxProp
+  n as default
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package/dist/ui-components.es118.js

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-    otherProps: {}
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-  return Object.keys(s).forEach((t) => {
-    o[t] ? e.systemProps[t] = s[t] : e.otherProps[t] = s[t];
-  }), e;
-};
-function P(s) {
+import p from "./ui-components.es194.js";
+import s from "./ui-components.es195.js";
+import m from "./ui-components.es196.js";
+function d(a, o, t) {
+  a.colorSchemes && t && (a.colorSchemes[o] = {
+    ...t !== !0 && t,
+    palette: p({
+      ...t === !0 ? {} : t.palette,
+      mode: o
+    })
+    // cast type to skip module augmentation test
+  });
+}
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-    ...i,
-    sx: r
+    palette: t,
+    cssVariables: i = !1,
+    colorSchemes: f = t ? void 0 : {
+      light: !0
+    },
+    defaultColorScheme: n = t?.mode,
+    ...u
+  } = a, r = n || "light", h = f?.[r], e = {
+    ...f,
+    ...t ? {
+      [r]: {
+        ...typeof h != "boolean" && h,
+        palette: t
+      }
+    } : void 0
   };
+  if (i === !1) {
+    if (!("colorSchemes" in a))
+      return m(a, ...o);
+    let c = t;
+    "palette" in a || e[r] && (e[r] !== !0 ? c = e[r].palette : r === "dark" && (c = {
+      mode: "dark"
+    }));
+    const l = m({
+      ...a,
+      palette: c
+    }, ...o);
+    return l.defaultColorScheme = r, l.colorSchemes = e, l.palette.mode === "light" && (l.colorSchemes.light = {
+      ...e.light !== !0 && e.light,
+      palette: l.palette
+    }, d(l, "dark", e.dark)), l.palette.mode === "dark" && (l.colorSchemes.dark = {
+      ...e.dark !== !0 && e.dark,
+      palette: l.palette
+    }, d(l, "light", e.light)), l;
+  }
+  return !t && !("light" in e) && r === "light" && (e.light = !0), s({
+    ...u,
+    colorSchemes: e,
+    defaultColorScheme: r,
+    ...typeof i != "boolean" && i
+  }, ...o);
 }
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-  P as default
+  C as default
 };
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package/dist/ui-components.es119.js

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-import o from "./ui-components.es89.js";
-import r from "./ui-components.es147.js";
-import t from "./ui-components.es122.js";
-import { j as m } from "./ui-components.es15.js";
-import p from "./ui-components.es297.js";
-function s(e) {
-  return /* @__PURE__ */ m.jsx(p, {
-    ...e,
-    defaultTheme: r,
-    themeId: t
-  });
+import e from "./ui-components.es110.js";
+import i from "./ui-components.es111.js";
+function o(t) {
+  return e("MuiTextField", t);
 }
-process.env.NODE_ENV !== "production" && (s.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * The styles you want to apply globally.
-   */
-  styles: o.oneOfType([o.array, o.func, o.number, o.object, o.string, o.bool])
-});
+i("MuiTextField", ["root"]);
 export {
-  s as default
+  o as getTextFieldUtilityClass
 };
 //# sourceMappingURL=ui-components.es119.js.map

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package/dist/ui-components.es12.js

@@ -1,132 +1,37 @@
-import { c as X } from "./ui-components.es16.js";
-import { useState as x, useRef as z, useEffect as Y } from "react";
-import { getGenes as Z, getCCREs as D, getLegacyCCREs as _, getICREs as ee, getSNPs as te, getStudys as se } from "./ui-components.es59.js";
-import { isDomain as m, geneResultList as re, ccreResultList as oe, getCoordinates as ce, legacyCcreResultList as ne, icreResultList as ae, snpResultList as le, studyResultList as ie, OmesList as ue, omeResultsList as fe } from "./ui-components.es58.js";
-const me = 3;
-function Le(i, B) {
-  const e = X.c(34);
-  let w;
-  e[0] !== i ? (w = Array.isArray(i) ? i : [i], e[0] = i, e[1] = w) : w = e[1];
-  const h = w, {
-    queries: R,
-    assembly: c,
-    geneVersion: d,
-    limit: u,
-    showiCREFlag: y,
-    debounceMs: U,
-    graphqlUrl: a
-  } = B, L = U === void 0 ? 200 : U;
-  let S;
-  e[2] !== u ? (S = (W) => typeof u == "number" ? u : u?.[W] ?? me, e[2] = u, e[3] = S) : S = e[3];
-  const l = S, [I, V] = x(null), [T, G] = x(!1), [K, p] = x(null), C = z(null), g = z(null);
-  let b;
-  e[4] !== h ? (b = JSON.stringify(h), e[4] = h, e[5] = b) : b = e[5];
-  const q = b;
-  let P;
-  e[6] !== u ? (P = JSON.stringify(u), e[6] = u, e[7] = P) : P = e[7];
-  const v = P;
-  let A;
-  e[8] !== d ? (A = JSON.stringify(d), e[8] = d, e[9] = A) : A = e[9];
-  const F = A;
-  let M;
-  e[10] !== R ? (M = R.join("|"), e[10] = R, e[11] = M) : M = e[11];
-  const J = M;
-  let N;
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-    if (W.length === 0) {
-      V([]), G(!1), p(null);
-      return;
-    }
-    G(!0), p(null), g.current = new AbortController();
-    const f = g.current.signal;
-    return C.current = window.setTimeout(() => {
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-        try {
-          const E = [], n = (r, t) => {
-            if (!R.includes(r))
-              return !1;
-            const j = /^rs\d+$/i.test(t) && t.toLowerCase() !== "rs1";
-            switch (r) {
-              case "Coordinate":
-                return m(t);
-              case "Gene":
-                return !m(t) && !t.toLowerCase().startsWith(c === "GRCh38" ? "eh38" : "em10") && !j;
-              case "cCRE":
-                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
-              case "Legacy cCRE":
-                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
-              case "iCRE":
-                return !m(t) && c === "GRCh38" && t.toLowerCase().startsWith("eh");
-              case "SNP":
-                return !m(t) && c === "GRCh38" && (["r", "rs"].includes(t) || j);
-              case "Study":
-                return !m(t) && c === "GRCh38";
-              case "Ome":
-                return !m(t) && c === "GRCh38";
-              default:
-                return !1;
-            }
-          };
-          await Promise.all(W.map(async (r) => {
-            const t = [];
-            if (n("Gene", r)) {
-              const s = l("Gene");
-              t.push(Z(r, c, s, d, a, f).then((o) => o ? re(o, s, typeof d == "object") : []));
-            }
-            if (n("cCRE", r)) {
-              const s = l("cCRE");
-              t.push(D(r, c, s, y || !1, a, f).then((o) => o?.data?.cCREAutocompleteQuery ? oe(o.data.cCREAutocompleteQuery, s) : []));
-            }
-            if (n("Coordinate", r) && E.push(...ce(r, c)), n("Legacy cCRE", r)) {
-              const s = l("Legacy cCRE");
-              t.push(_(r, c, a, f).then((o) => o?.data?.ccreMappings ? ne(o.data.ccreMappings, s) : []));
-            }
-            if (n("iCRE", r)) {
-              const s = l("iCRE");
-              t.push(ee(r, s, a, f).then((o) => o?.data?.iCREQuery ? ae(o.data.iCREQuery, s) : []));
-            }
-            if (n("SNP", r)) {
-              const s = l("SNP");
-              t.push(te(r, c, s, a, f).then((o) => o?.data?.snpAutocompleteQuery ? le(o.data.snpAutocompleteQuery, s) : []));
-            }
-            if (n("Study", r)) {
-              const s = l("Study");
-              t.push(se(r, s, a, f).then((o) => o?.data?.getGWASStudiesMetadata ? ie(o.data.getGWASStudiesMetadata, s) : []));
-            }
-            if (n("Ome", r)) {
-              const s = l("Ome"), o = ue.filter(($) => {
-                const k = r.toLowerCase();
-                return $.label.toLowerCase().includes(k) || $.keywords?.some((H) => H.toLowerCase().includes(k));
-              }).slice(0, s);
-              t.push(Promise.resolve(fe(o)));
-            }
-            (await Promise.all(t)).forEach((s) => E.push(...s));
-          })), f.aborted || (V(E), G(!1));
-        } catch (E) {
-          const n = E;
-          f.aborted || (p(n instanceof Error ? n : new Error(String(n))), G(!1));
-        }
-      })();
-    }, L), () => {
-      C.current && (window.clearTimeout(C.current), C.current = null);
-    };
-  }, e[12] = c, e[13] = L, e[14] = d, e[15] = l, e[16] = a, e[17] = h, e[18] = R, e[19] = y, e[20] = N) : N = e[20];
-  let O;
-  e[21] !== c || e[22] !== L || e[23] !== F || e[24] !== a || e[25] !== q || e[26] !== v || e[27] !== J || e[28] !== y ? (O = [q, J, c, v, F, y, L, a], e[21] = c, e[22] = L, e[23] = F, e[24] = a, e[25] = q, e[26] = v, e[27] = J, e[28] = y, e[29] = O) : O = e[29], Y(N, O);
-  let Q;
-  return e[30] !== I || e[31] !== K || e[32] !== T ? (Q = {
-    data: I,
-    loading: T,
-    error: K
-  }, e[30] = I, e[31] = K, e[32] = T, e[33] = Q) : Q = e[33], Q;
-}
-function de(i) {
-  return !!i && i.trim() !== "";
-}
+import { useState as a, useEffect as f } from "react";
+const g = ({
+  assembly: s,
+  skip: e
+}) => {
+  const [c, o] = a(!1), [l, i] = a(!1), [p, u] = a(void 0), r = s === "GRCh38" ? "https://downloads.wenglab.org/human_biosamples_tracks_metadata.json" : "https://downloads.wenglab.org/mouse_biosamples_tracks_metadata.json";
+  return f(() => {
+    e || (async () => {
+      try {
+        o(!0);
+        const t = await fetch(r);
+        if (!t.ok)
+          throw new Error(`Response status: ${t.status}`);
+        const n = (await t.json())?.data?.ccREBiosampleQuery?.biosamples;
+        if (!n)
+          throw new Error("No biosamples present in return data");
+        const m = n.map((d) => ({
+          ...d,
+          assembly: s
+        }));
+        u(m);
+      } catch {
+        i(!0);
+      } finally {
+        o(!1);
+      }
+    })();
+  }, [r, e, s]), {
+    data: p,
+    loading: c,
+    error: l
+  };
+};
 export {
-  me as DEFAULT_LIMIT,
-  Le as useEntityAutocomplete
+  g as useEncodeBiosampleData
 };
 //# sourceMappingURL=ui-components.es12.js.map

package/dist/ui-components.es12.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es12.js","sources":["../src/components/GenomeSearch/useEntityAutocomplete.ts"],"sourcesContent":["import { useEffect, useRef, useState } from \"react\";\nimport { getCCREs, getGenes, getICREs, getLegacyCCREs, getSNPs, getStudys } from \"./queries\";\nimport {\n  ccreResultList,\n  geneResultList,\n  getCoordinates,\n  icreResultList,\n  snpResultList,\n  studyResultList,\n  isDomain,\n  legacyCcreResultList,\n  OmesList,\n  omeResultsList,\n} from \"./utils\";\nimport { GenomeSearchProps, Result, ResultType } from \"./types\";\n\nexport const DEFAULT_LIMIT = 3;\n\ntype HookOptions = {\n  queries: ResultType[];\n  assembly: GenomeSearchProps[\"assembly\"];\n  graphqlUrl: string;\n  geneVersion?: GenomeSearchProps[\"geneVersion\"];\n  limit?: GenomeSearchProps[\"limit\"];\n  showiCREFlag?: boolean;\n  debounceMs?: number;\n};\n\ntype HookResult = {\n  data: Result[] | null;\n  loading: boolean;\n  error: Error | null;\n};\n\n// Accept either a single string or an array of strings. 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DEFAULT_LIMIT;\n\n  const [data, setData] = useState<Result[] | null>(null);\n  const [loading, setLoading] = useState(false);\n  const [error, setError] = useState<Error | null>(null);\n\n  const timeoutRef = useRef<number | null>(null);\n  const abortControllerRef = useRef<AbortController | null>(null);\n\n  const inputsKey = JSON.stringify(inputs);\n  const limitKey = JSON.stringify(limit);\n  const geneVersionKey = JSON.stringify(geneVersion);\n  const queriesKey = queries.join(\"|\");\n\n  useEffect(() => {\n    // clear any pending timer and abort previous requests\n    if (timeoutRef.current) {\n      window.clearTimeout(timeoutRef.current);\n      timeoutRef.current = null;\n    }\n    if (abortControllerRef.current) {\n      abortControllerRef.current.abort();\n      abortControllerRef.current = null;\n    }\n\n    // if no inputs or only empty strings, clear\n    const activeInputs = inputs.filter((i) => !!i && i.trim() !== \"\");\n    if (activeInputs.length === 0) {\n      setData([]);\n      setLoading(false);\n      setError(null);\n      return;\n    }\n\n    setLoading(true);\n    setError(null);\n\n    // Create a new AbortController for this search request\n    abortControllerRef.current = new AbortController();\n    const abortSignal = abortControllerRef.current.signal;\n\n    timeoutRef.current = window.setTimeout(() => {\n      (async () => {\n        try {\n          const aggregated: Result[] = [];\n\n          const shouldFetch = (type: ResultType, input: string): boolean => {\n            if (!queries.includes(type)) return false;\n\n            const isSnpRsId = /^rs\\d+$/i.test(input) && input.toLowerCase() !== \"rs1\";\n\n            switch (type) {\n              case \"Coordinate\":\n                return isDomain(input);\n              case \"Gene\":\n                return !isDomain(input) && !input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh38\" : \"em10\") && !isSnpRsId;\n              case \"cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"Legacy cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"iCRE\":\n                return !isDomain(input) && assembly === \"GRCh38\" && input.toLowerCase().startsWith(\"eh\");\n              case \"SNP\":\n                return !isDomain(input) && assembly === \"GRCh38\" && ([\"r\", \"rs\"].includes(input) || isSnpRsId);\n              case \"Study\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              case \"Ome\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              default:\n                return false;\n            }\n          };\n\n          await Promise.all(\n            activeInputs.map(async (input) => {\n              // array for fetch promises (so that we can Promise.all them in parallel)\n              const fetchPromises: Promise<Result[]>[] = [];\n\n              // Genes\n              if (shouldFetch(\"Gene\", input)) {\n                const geneLimit = getLimit(\"Gene\");\n                fetchPromises.push(\n                  getGenes(input, assembly, geneLimit, geneVersion, graphqlUrl, abortSignal).then((geneResults) =>\n                    geneResults ? geneResultList(geneResults as any, geneLimit, typeof geneVersion === \"object\") : []\n                  )\n                );\n              }\n\n              // cCRE\n              if (shouldFetch(\"cCRE\", input)) {\n                const ccreLimit = getLimit(\"cCRE\");\n                fetchPromises.push(\n                  getCCREs(input, assembly, ccreLimit, showiCREFlag || false, graphqlUrl, abortSignal).then((ccreData) =>\n                    ccreData?.data?.cCREAutocompleteQuery\n                      ? ccreResultList(ccreData.data.cCREAutocompleteQuery, ccreLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Coordinates (synchronous, push directly)\n              if (shouldFetch(\"Coordinate\", input)) {\n                aggregated.push(...getCoordinates(input, assembly));\n              }\n\n              // Legacy cCRE\n              if (shouldFetch(\"Legacy cCRE\", input)) {\n                const legacyCcreLimit = getLimit(\"Legacy cCRE\");\n                fetchPromises.push(\n                  getLegacyCCREs(input, assembly, graphqlUrl, abortSignal).then((legacyData) =>\n                    legacyData?.data?.ccreMappings\n                      ? legacyCcreResultList(legacyData.data.ccreMappings, legacyCcreLimit)\n                      : []\n                  )\n                );\n              }\n\n              // iCRE\n              if (shouldFetch(\"iCRE\", input)) {\n                const icreLimit = getLimit(\"iCRE\");\n                fetchPromises.push(\n                  getICREs(input, icreLimit, graphqlUrl, abortSignal).then((icreData) =>\n                    icreData?.data?.iCREQuery ? icreResultList(icreData.data.iCREQuery, icreLimit) : []\n                  )\n                );\n              }\n\n              // SNP\n              if (shouldFetch(\"SNP\", input)) {\n                const snpLimit = getLimit(\"SNP\");\n                fetchPromises.push(\n                  getSNPs(input, assembly, snpLimit, graphqlUrl, abortSignal).then((snpData) =>\n                    snpData?.data?.snpAutocompleteQuery\n                      ? snpResultList(snpData.data.snpAutocompleteQuery, snpLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Study\n              if (shouldFetch(\"Study\", input)) {\n                const studyLimit = getLimit(\"Study\");\n                fetchPromises.push(\n                  getStudys(input, studyLimit, graphqlUrl, abortSignal).then((studyData) =>\n                    studyData?.data?.getGWASStudiesMetadata\n                      ? studyResultList(studyData.data.getGWASStudiesMetadata, studyLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Ome\n              if (shouldFetch(\"Ome\", input)) {\n                const omeLimit = getLimit(\"Ome\");\n\n                const filtered = OmesList.filter((ome) => {\n                  const search = input.toLowerCase();\n\n                  return (\n                    ome.label.toLowerCase().includes(search) ||\n                    ome.keywords?.some((k) => k.toLowerCase().includes(search))\n                  );\n                }).slice(0, omeLimit);\n\n                fetchPromises.push(\n                  Promise.resolve(omeResultsList(filtered))\n                );\n              }\n\n              // Execute all parallel fetches and aggregate results\n              const allResults = await Promise.all(fetchPromises);\n              allResults.forEach((results) => aggregated.push(...results));\n            })\n          );\n\n          // Only update state if this request wasn't aborted\n          if (!abortSignal.aborted) {\n            setData(aggregated);\n            setLoading(false);\n          }\n        } catch (err: any) {\n          // Only update error state if this request wasn't aborted\n          if (!abortSignal.aborted) {\n            setError(err instanceof Error ? err : new Error(String(err)));\n            setLoading(false);\n          }\n        }\n      })();\n    }, debounceMs);\n\n    return () => {\n      if (timeoutRef.current) {\n        window.clearTimeout(timeoutRef.current);\n        timeoutRef.current = null;\n      }\n    };\n  }, [inputsKey, queriesKey, assembly, limitKey, geneVersionKey, showiCREFlag, debounceMs, graphqlUrl]);\n\n  return { data, loading, error 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