@weng-lab/ui-components 3.0.1 → 3.1.0

package/dist/ui-components.es13.js

@@ -1,64 +1,132 @@
-import { j as P } from "./ui-components.es15.js";
-import { c as h } from "./ui-components.es16.js";
-import T from "./ui-components.es62.js";
-import { useAutoSort as j } from "./ui-components.es63.js";
-import { sortableTableCheckboxColumn as O } from "./ui-components.es64.js";
-function q(A) {
-  const t = h.c(24), {
-    tableProps: f,
-    columns: d,
-    initialSort: n,
-    isPresorted: i
-  } = A;
-  let e, o, s;
-  t[0] !== f ? ({
-    apiRef: e,
-    onReady: s,
-    ...o
-  } = f, t[0] = f, t[1] = e, t[2] = o, t[3] = s) : (e = t[1], o = t[2], s = t[3]);
-  const {
-    autoSort: b,
-    setAutoSort: x,
-    onReady: y
-  } = j(e, n, i);
-  let a;
-  t[4] !== y || t[5] !== s ? (a = (g) => {
-    const p = s?.(g);
-    return [...Array.isArray(p) ? p : p ? [p] : [], ...y(g)];
-  }, t[4] = y, t[5] = s, t[6] = a) : a = t[6];
-  const S = a;
-  let c;
-  t[7] !== d ? (c = [O, ...d], t[7] = d, t[8] = c) : c = t[8];
-  const R = c;
-  let r;
-  t[9] !== n ? (r = {
-    sorting: {
-      sortModel: n
+import { c as X } from "./ui-components.es18.js";
+import { useState as x, useRef as z, useEffect as Y } from "react";
+import { getGenes as Z, getCCREs as D, getLegacyCCREs as _, getICREs as ee, getSNPs as te, getStudys as se } from "./ui-components.es66.js";
+import { isDomain as m, geneResultList as re, ccreResultList as oe, getCoordinates as ce, legacyCcreResultList as ne, icreResultList as ae, snpResultList as le, studyResultList as ie, OmesList as ue, omeResultsList as fe } from "./ui-components.es65.js";
+const me = 3;
+function Le(i, B) {
+  const e = X.c(34);
+  let w;
+  e[0] !== i ? (w = Array.isArray(i) ? i : [i], e[0] = i, e[1] = w) : w = e[1];
+  const h = w, {
+    queries: R,
+    assembly: c,
+    geneVersion: d,
+    limit: u,
+    showiCREFlag: y,
+    debounceMs: U,
+    graphqlUrl: a
+  } = B, L = U === void 0 ? 200 : U;
+  let S;
+  e[2] !== u ? (S = (W) => typeof u == "number" ? u : u?.[W] ?? me, e[2] = u, e[3] = S) : S = e[3];
+  const l = S, [I, V] = x(null), [T, G] = x(!1), [K, p] = x(null), C = z(null), g = z(null);
+  let b;
+  e[4] !== h ? (b = JSON.stringify(h), e[4] = h, e[5] = b) : b = e[5];
+  const q = b;
+  let P;
+  e[6] !== u ? (P = JSON.stringify(u), e[6] = u, e[7] = P) : P = e[7];
+  const v = P;
+  let A;
+  e[8] !== d ? (A = JSON.stringify(d), e[8] = d, e[9] = A) : A = e[9];
+  const F = A;
+  let M;
+  e[10] !== R ? (M = R.join("|"), e[10] = R, e[11] = M) : M = e[11];
+  const J = M;
+  let N;
+  e[12] !== c || e[13] !== L || e[14] !== d || e[15] !== l || e[16] !== a || e[17] !== h || e[18] !== R || e[19] !== y ? (N = () => {
+    C.current && (window.clearTimeout(C.current), C.current = null), g.current && (g.current.abort(), g.current = null);
+    const W = h.filter(de);
+    if (W.length === 0) {
+      V([]), G(!1), p(null);
+      return;
     }
-  }, t[9] = n, t[10] = r) : r = t[10];
-  let l;
-  t[11] !== b || t[12] !== x ? (l = {
-    toolbar: {
-      extra: /* @__PURE__ */ P.jsx(T, { autoSort: b, setAutoSort: x })
-    }
-  }, t[11] = b, t[12] = x, t[13] = l) : l = t[13];
-  let m;
-  t[14] !== e || t[15] !== R || t[16] !== S || t[17] !== i || t[18] !== o || t[19] !== r || t[20] !== l ? (m = {
-    apiRef: e,
-    onReady: S,
-    disableColumnSorting: i,
-    initialState: r,
-    slotProps: l,
-    columns: R,
-    ...o
-  }, t[14] = e, t[15] = R, t[16] = S, t[17] = i, t[18] = o, t[19] = r, t[20] = l, t[21] = m) : m = t[21];
-  const C = m;
-  let u;
-  return t[22] !== C ? (u = {
-    syncedTableProps: C
-  }, t[22] = C, t[23] = u) : u = t[23], u;
+    G(!0), p(null), g.current = new AbortController();
+    const f = g.current.signal;
+    return C.current = window.setTimeout(() => {
+      (async () => {
+        try {
+          const E = [], n = (r, t) => {
+            if (!R.includes(r))
+              return !1;
+            const j = /^rs\d+$/i.test(t) && t.toLowerCase() !== "rs1";
+            switch (r) {
+              case "Coordinate":
+                return m(t);
+              case "Gene":
+                return !m(t) && !t.toLowerCase().startsWith(c === "GRCh38" ? "eh38" : "em10") && !j;
+              case "cCRE":
+                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
+              case "Legacy cCRE":
+                return !m(t) && t.toLowerCase().startsWith(c === "GRCh38" ? "eh" : "em");
+              case "iCRE":
+                return !m(t) && c === "GRCh38" && t.toLowerCase().startsWith("eh");
+              case "SNP":
+                return !m(t) && c === "GRCh38" && (["r", "rs"].includes(t) || j);
+              case "Study":
+                return !m(t) && c === "GRCh38";
+              case "Ome":
+                return !m(t) && c === "GRCh38";
+              default:
+                return !1;
+            }
+          };
+          await Promise.all(W.map(async (r) => {
+            const t = [];
+            if (n("Gene", r)) {
+              const s = l("Gene");
+              t.push(Z(r, c, s, d, a, f).then((o) => o ? re(o, s, typeof d == "object") : []));
+            }
+            if (n("cCRE", r)) {
+              const s = l("cCRE");
+              t.push(D(r, c, s, y || !1, a, f).then((o) => o?.data?.cCREAutocompleteQuery ? oe(o.data.cCREAutocompleteQuery, s) : []));
+            }
+            if (n("Coordinate", r) && E.push(...ce(r, c)), n("Legacy cCRE", r)) {
+              const s = l("Legacy cCRE");
+              t.push(_(r, c, a, f).then((o) => o?.data?.ccreMappings ? ne(o.data.ccreMappings, s) : []));
+            }
+            if (n("iCRE", r)) {
+              const s = l("iCRE");
+              t.push(ee(r, s, a, f).then((o) => o?.data?.iCREQuery ? ae(o.data.iCREQuery, s) : []));
+            }
+            if (n("SNP", r)) {
+              const s = l("SNP");
+              t.push(te(r, c, s, a, f).then((o) => o?.data?.snpAutocompleteQuery ? le(o.data.snpAutocompleteQuery, s) : []));
+            }
+            if (n("Study", r)) {
+              const s = l("Study");
+              t.push(se(r, s, a, f).then((o) => o?.data?.getGWASStudiesMetadata ? ie(o.data.getGWASStudiesMetadata, s) : []));
+            }
+            if (n("Ome", r)) {
+              const s = l("Ome"), o = ue.filter(($) => {
+                const k = r.toLowerCase();
+                return $.label.toLowerCase().includes(k) || $.keywords?.some((H) => H.toLowerCase().includes(k));
+              }).slice(0, s);
+              t.push(Promise.resolve(fe(o)));
+            }
+            (await Promise.all(t)).forEach((s) => E.push(...s));
+          })), f.aborted || (V(E), G(!1));
+        } catch (E) {
+          const n = E;
+          f.aborted || (p(n instanceof Error ? n : new Error(String(n))), G(!1));
+        }
+      })();
+    }, L), () => {
+      C.current && (window.clearTimeout(C.current), C.current = null);
+    };
+  }, e[12] = c, e[13] = L, e[14] = d, e[15] = l, e[16] = a, e[17] = h, e[18] = R, e[19] = y, e[20] = N) : N = e[20];
+  let O;
+  e[21] !== c || e[22] !== L || e[23] !== F || e[24] !== a || e[25] !== q || e[26] !== v || e[27] !== J || e[28] !== y ? (O = [q, J, c, v, F, y, L, a], e[21] = c, e[22] = L, e[23] = F, e[24] = a, e[25] = q, e[26] = v, e[27] = J, e[28] = y, e[29] = O) : O = e[29], Y(N, O);
+  let Q;
+  return e[30] !== I || e[31] !== K || e[32] !== T ? (Q = {
+    data: I,
+    loading: T,
+    error: K
+  }, e[30] = I, e[31] = K, e[32] = T, e[33] = Q) : Q = e[33], Q;
+}
+function de(i) {
+  return !!i && i.trim() !== "";
 }
 export {
-  q as useSyncedTable
+  me as DEFAULT_LIMIT,
+  Le as useEntityAutocomplete
 };
 //# sourceMappingURL=ui-components.es13.js.map

package/dist/ui-components.es13.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ui-components.es13.js","sources":["../src/components/GenomeSearch/useEntityAutocomplete.ts"],"sourcesContent":["import { useEffect, useRef, useState } from \"react\";\nimport { getCCREs, getGenes, getICREs, getLegacyCCREs, getSNPs, getStudys } from \"./queries\";\nimport {\n  ccreResultList,\n  geneResultList,\n  getCoordinates,\n  icreResultList,\n  snpResultList,\n  studyResultList,\n  isDomain,\n  legacyCcreResultList,\n  OmesList,\n  omeResultsList,\n} from \"./utils\";\nimport { GenomeSearchProps, Result, ResultType } from \"./types\";\n\nexport const DEFAULT_LIMIT = 3;\n\ntype HookOptions = {\n  queries: ResultType[];\n  assembly: GenomeSearchProps[\"assembly\"];\n  graphqlUrl: string;\n  geneVersion?: GenomeSearchProps[\"geneVersion\"];\n  limit?: GenomeSearchProps[\"limit\"];\n  showiCREFlag?: boolean;\n  debounceMs?: number;\n};\n\ntype HookResult = {\n  data: Result[] | null;\n  loading: boolean;\n  error: Error | null;\n};\n\n// Accept either a single string or an array of strings. Debounced fetches for each input.\nexport function useEntityAutocomplete(\n  inputsArg: string | string[],\n  options: HookOptions\n): HookResult {\n  const inputs = Array.isArray(inputsArg) ? inputsArg : [inputsArg];\n  const { queries, assembly, geneVersion, limit, showiCREFlag, debounceMs = 200, graphqlUrl } = options;\n\n  const getLimit = (type: ResultType): number =>\n    typeof limit === \"number\" ? limit : limit?.[type] ?? DEFAULT_LIMIT;\n\n  const [data, setData] = useState<Result[] | null>(null);\n  const [loading, setLoading] = useState(false);\n  const [error, setError] = useState<Error | null>(null);\n\n  const timeoutRef = useRef<number | null>(null);\n  const abortControllerRef = useRef<AbortController | null>(null);\n\n  const inputsKey = JSON.stringify(inputs);\n  const limitKey = JSON.stringify(limit);\n  const geneVersionKey = JSON.stringify(geneVersion);\n  const queriesKey = queries.join(\"|\");\n\n  useEffect(() => {\n    // clear any pending timer and abort previous requests\n    if (timeoutRef.current) {\n      window.clearTimeout(timeoutRef.current);\n      timeoutRef.current = null;\n    }\n    if (abortControllerRef.current) {\n      abortControllerRef.current.abort();\n      abortControllerRef.current = null;\n    }\n\n    // if no inputs or only empty strings, clear\n    const activeInputs = inputs.filter((i) => !!i && i.trim() !== \"\");\n    if (activeInputs.length === 0) {\n      setData([]);\n      setLoading(false);\n      setError(null);\n      return;\n    }\n\n    setLoading(true);\n    setError(null);\n\n    // Create a new AbortController for this search request\n    abortControllerRef.current = new AbortController();\n    const abortSignal = abortControllerRef.current.signal;\n\n    timeoutRef.current = window.setTimeout(() => {\n      (async () => {\n        try {\n          const aggregated: Result[] = [];\n\n          const shouldFetch = (type: ResultType, input: string): boolean => {\n            if (!queries.includes(type)) return false;\n\n            const isSnpRsId = /^rs\\d+$/i.test(input) && input.toLowerCase() !== \"rs1\";\n\n            switch (type) {\n              case \"Coordinate\":\n                return isDomain(input);\n              case \"Gene\":\n                return !isDomain(input) && !input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh38\" : \"em10\") && !isSnpRsId;\n              case \"cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"Legacy cCRE\":\n                return !isDomain(input) && input.toLowerCase().startsWith(assembly === \"GRCh38\" ? \"eh\" : \"em\");\n              case \"iCRE\":\n                return !isDomain(input) && assembly === \"GRCh38\" && input.toLowerCase().startsWith(\"eh\");\n              case \"SNP\":\n                return !isDomain(input) && assembly === \"GRCh38\" && ([\"r\", \"rs\"].includes(input) || isSnpRsId);\n              case \"Study\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              case \"Ome\":\n                return !isDomain(input) && assembly === \"GRCh38\";\n              default:\n                return false;\n            }\n          };\n\n          await Promise.all(\n            activeInputs.map(async (input) => {\n              // array for fetch promises (so that we can Promise.all them in parallel)\n              const fetchPromises: Promise<Result[]>[] = [];\n\n              // Genes\n              if (shouldFetch(\"Gene\", input)) {\n                const geneLimit = getLimit(\"Gene\");\n                fetchPromises.push(\n                  getGenes(input, assembly, geneLimit, geneVersion, graphqlUrl, abortSignal).then((geneResults) =>\n                    geneResults ? geneResultList(geneResults as any, geneLimit, typeof geneVersion === \"object\") : []\n                  )\n                );\n              }\n\n              // cCRE\n              if (shouldFetch(\"cCRE\", input)) {\n                const ccreLimit = getLimit(\"cCRE\");\n                fetchPromises.push(\n                  getCCREs(input, assembly, ccreLimit, showiCREFlag || false, graphqlUrl, abortSignal).then((ccreData) =>\n                    ccreData?.data?.cCREAutocompleteQuery\n                      ? ccreResultList(ccreData.data.cCREAutocompleteQuery, ccreLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Coordinates (synchronous, push directly)\n              if (shouldFetch(\"Coordinate\", input)) {\n                aggregated.push(...getCoordinates(input, assembly));\n              }\n\n              // Legacy cCRE\n              if (shouldFetch(\"Legacy cCRE\", input)) {\n                const legacyCcreLimit = getLimit(\"Legacy cCRE\");\n                fetchPromises.push(\n                  getLegacyCCREs(input, assembly, graphqlUrl, abortSignal).then((legacyData) =>\n                    legacyData?.data?.ccreMappings\n                      ? legacyCcreResultList(legacyData.data.ccreMappings, legacyCcreLimit)\n                      : []\n                  )\n                );\n              }\n\n              // iCRE\n              if (shouldFetch(\"iCRE\", input)) {\n                const icreLimit = getLimit(\"iCRE\");\n                fetchPromises.push(\n                  getICREs(input, icreLimit, graphqlUrl, abortSignal).then((icreData) =>\n                    icreData?.data?.iCREQuery ? icreResultList(icreData.data.iCREQuery, icreLimit) : []\n                  )\n                );\n              }\n\n              // SNP\n              if (shouldFetch(\"SNP\", input)) {\n                const snpLimit = getLimit(\"SNP\");\n                fetchPromises.push(\n                  getSNPs(input, assembly, snpLimit, graphqlUrl, abortSignal).then((snpData) =>\n                    snpData?.data?.snpAutocompleteQuery\n                      ? snpResultList(snpData.data.snpAutocompleteQuery, snpLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Study\n              if (shouldFetch(\"Study\", input)) {\n                const studyLimit = getLimit(\"Study\");\n                fetchPromises.push(\n                  getStudys(input, studyLimit, graphqlUrl, abortSignal).then((studyData) =>\n                    studyData?.data?.getGWASStudiesMetadata\n                      ? studyResultList(studyData.data.getGWASStudiesMetadata, studyLimit)\n                      : []\n                  )\n                );\n              }\n\n              // Ome\n              if (shouldFetch(\"Ome\", input)) {\n                const omeLimit = getLimit(\"Ome\");\n\n                const filtered = OmesList.filter((ome) => {\n                  const search = input.toLowerCase();\n\n                  return (\n                    ome.label.toLowerCase().includes(search) ||\n                    ome.keywords?.some((k) => k.toLowerCase().includes(search))\n                  );\n                }).slice(0, omeLimit);\n\n                fetchPromises.push(\n                  Promise.resolve(omeResultsList(filtered))\n                );\n              }\n\n              // Execute all parallel fetches and aggregate results\n              const allResults = await Promise.all(fetchPromises);\n              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package/dist/ui-components.es130.js

@@ -1,10 +1,14 @@
-import e from "./ui-components.es95.js";
-import i from "./ui-components.es96.js";
-function o(t) {
-  return e("MuiTextField", t);
+const n = "exact-prop: ​";
+function u(e) {
+  return process.env.NODE_ENV === "production" ? e : {
+    ...e,
+    [n]: (o) => {
+      const t = Object.keys(o).filter((r) => !e.hasOwnProperty(r));
+      return t.length > 0 ? new Error(`The following props are not supported: ${t.map((r) => `\`${r}\``).join(", ")}. Please remove them.`) : null;
+    }
+  };
 }
-i("MuiTextField", ["root"]);
 export {
-  o as getTextFieldUtilityClass
+  u as default
 };
 //# sourceMappingURL=ui-components.es130.js.map

package/dist/ui-components.es130.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es130.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotion+react@11.14.0_@types+react@19.2.14_react@19.2.4__@emotion+_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/TextField/textFieldClasses.js"],"sourcesContent":["import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTextFieldUtilityClass(slot) {\n  return generateUtilityClass('MuiTextField', slot);\n}\nconst textFieldClasses = generateUtilityClasses('MuiTextField', ['root']);\nexport default textFieldClasses;"],"names":["getTextFieldUtilityClass","slot","generateUtilityClass","generateUtilityClasses"],"mappings":";;AAEO,SAASA,EAAyBC,GAAM;AAC7C,SAAOC,EAAqB,gBAAgBD,CAAI;AAClD;AACyBE,EAAuB,gBAAgB,CAAC,MAAM,CAAC;","x_google_ignoreList":[0]}
+{"version":3,"file":"ui-components.es130.js","sources":["../../../node_modules/.pnpm/@mui+utils@7.3.9_@types+react@19.2.14_react@19.2.4/node_modules/@mui/utils/esm/exactProp/exactProp.js"],"sourcesContent":["// This module is based on https://github.com/airbnb/prop-types-exact repository.\n// However, in order to reduce the number of dependencies and to remove some extra safe checks\n// the module was forked.\n\nconst specialProperty = 'exact-prop: \\u200b';\nexport default function exactProp(propTypes) {\n  if (process.env.NODE_ENV === 'production') {\n    return propTypes;\n  }\n  return {\n    ...propTypes,\n    [specialProperty]: props => {\n      const unsupportedProps = Object.keys(props).filter(prop => !propTypes.hasOwnProperty(prop));\n      if (unsupportedProps.length > 0) {\n        return new Error(`The following props are not supported: ${unsupportedProps.map(prop => `\\`${prop}\\``).join(', ')}. Please remove them.`);\n      }\n      return null;\n    }\n  };\n}"],"names":["specialProperty","exactProp","propTypes","props","unsupportedProps","prop"],"mappings":"AAIA,MAAMA,IAAkB;AACT,SAASC,EAAUC,GAAW;AAC3C,SAAI,QAAQ,IAAI,aAAa,eACpBA,IAEF;AAAA,IACL,GAAGA;AAAA,IACH,CAACF,CAAe,GAAG,CAAAG,MAAS;AAC1B,YAAMC,IAAmB,OAAO,KAAKD,CAAK,EAAE,OAAO,CAAAE,MAAQ,CAACH,EAAU,eAAeG,CAAI,CAAC;AAC1F,aAAID,EAAiB,SAAS,IACrB,IAAI,MAAM,0CAA0CA,EAAiB,IAAI,CAAAC,MAAQ,KAAKA,CAAI,IAAI,EAAE,KAAK,IAAI,CAAC,uBAAuB,IAEnI;AAAA,IACT;AAAA,EACJ;AACA;","x_google_ignoreList":[0]}

package/dist/ui-components.es131.js

@@ -1,51 +1,6 @@
-import y from "./ui-components.es261.js";
-import T from "./ui-components.es262.js";
-import g from "./ui-components.es171.js";
-import h from "./ui-components.es263.js";
-function L(o, t) {
-  const {
-    className: c,
-    elementType: i,
-    ownerState: n,
-    externalForwardedProps: P,
-    internalForwardedProps: s,
-    shouldForwardComponentProp: p = !1,
-    ...a
-  } = t, {
-    component: l,
-    slots: r = {
-      [o]: void 0
-    },
-    slotProps: u = {
-      [o]: void 0
-    },
-    ...w
-  } = P, d = r[o] || i, f = y(u[o], n), {
-    props: {
-      component: m,
-      ...C
-    },
-    internalRef: S
-  } = T({
-    className: c,
-    ...a,
-    externalForwardedProps: o === "root" ? w : void 0,
-    externalSlotProps: f
-  }), F = g(S, f?.ref, t.ref), e = o === "root" ? m || l : m, x = h(d, {
-    ...o === "root" && !l && !r[o] && s,
-    ...o !== "root" && !r[o] && s,
-    ...C,
-    ...e && !p && {
-      as: e
-    },
-    ...e && p && {
-      component: e
-    },
-    ref: F
-  }, n);
-  return [d, x];
-}
+import * as e from "react";
+const f = typeof window < "u" ? e.useLayoutEffect : e.useEffect;
 export {
-  L as default
+  f as default
 };
 //# sourceMappingURL=ui-components.es131.js.map

package/dist/ui-components.es131.js.map

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package/dist/ui-components.es132.js

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-  const [e, a] = u.useState(t), c = t || e;
-  return u.useEffect(() => {
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-function l(t) {
-  if (s !== void 0) {
-    const e = s();
-    return t ?? e;
-  }
-  return f(t);
-}
+import * as e from "react";
+const t = /* @__PURE__ */ e.createContext();
+process.env.NODE_ENV !== "production" && (t.displayName = "Tablelvl2Context");
 export {
-  l as default
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 };
 //# sourceMappingURL=ui-components.es132.js.map

package/dist/ui-components.es132.js.map

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