@weng-lab/ui-components 3.0.0 → 3.0.1-beta.0

package/dist/ui-components.es54.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es54.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotion+react@11.14.0_@types+react@19.2.14_react@19.2.4__@emotion+_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/FormControlLabel/FormControlLabel.js"],"sourcesContent":["'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport refType from '@mui/utils/refType';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { useFormControl } from \"../FormControl/index.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Typography from \"../Typography/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport formControlLabelClasses, { getFormControlLabelUtilityClasses } from \"./formControlLabelClasses.js\";\nimport formControlState from \"../FormControl/formControlState.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n  const {\n    classes,\n    disabled,\n    labelPlacement,\n    error,\n    required\n  } = ownerState;\n  const slots = {\n    root: ['root', disabled && 'disabled', `labelPlacement${capitalize(labelPlacement)}`, error && 'error', required && 'required'],\n    label: ['label', disabled && 'disabled'],\n    asterisk: ['asterisk', error && 'error']\n  };\n  return composeClasses(slots, getFormControlLabelUtilityClasses, classes);\n};\nexport const FormControlLabelRoot = styled('label', {\n  name: 'MuiFormControlLabel',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [{\n      [`& .${formControlLabelClasses.label}`]: styles.label\n    }, styles.root, styles[`labelPlacement${capitalize(ownerState.labelPlacement)}`]];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  display: 'inline-flex',\n  alignItems: 'center',\n  cursor: 'pointer',\n  // For correct alignment with the text.\n  verticalAlign: 'middle',\n  WebkitTapHighlightColor: 'transparent',\n  marginLeft: -11,\n  marginRight: 16,\n  // used for row presentation of radio/checkbox\n  [`&.${formControlLabelClasses.disabled}`]: {\n    cursor: 'default'\n  },\n  [`& .${formControlLabelClasses.label}`]: {\n    [`&.${formControlLabelClasses.disabled}`]: {\n      color: (theme.vars || theme).palette.text.disabled\n    }\n  },\n  variants: [{\n    props: {\n      labelPlacement: 'start'\n    },\n    style: {\n      flexDirection: 'row-reverse',\n      marginRight: -11\n    }\n  }, {\n    props: {\n      labelPlacement: 'top'\n    },\n    style: {\n      flexDirection: 'column-reverse'\n    }\n  }, {\n    props: {\n      labelPlacement: 'bottom'\n    },\n    style: {\n      flexDirection: 'column'\n    }\n  }, {\n    props: ({\n      labelPlacement\n    }) => labelPlacement === 'start' || labelPlacement === 'top' || labelPlacement === 'bottom',\n    style: {\n      marginLeft: 16 // used for row presentation of radio/checkbox\n    }\n  }]\n})));\nconst AsteriskComponent = styled('span', {\n  name: 'MuiFormControlLabel',\n  slot: 'Asterisk'\n})(memoTheme(({\n  theme\n}) => ({\n  [`&.${formControlLabelClasses.error}`]: {\n    color: (theme.vars || theme).palette.error.main\n  }\n})));\n\n/**\n * Drop-in replacement of the `Radio`, `Switch` and `Checkbox` component.\n * Use this component if you want to display an extra label.\n */\nconst FormControlLabel = /*#__PURE__*/React.forwardRef(function FormControlLabel(inProps, ref) {\n  const props = useDefaultProps({\n    props: inProps,\n    name: 'MuiFormControlLabel'\n  });\n  const {\n    checked,\n    className,\n    componentsProps = {},\n    control,\n    disabled: disabledProp,\n    disableTypography,\n    inputRef,\n    label: labelProp,\n    labelPlacement = 'end',\n    name,\n    onChange,\n    required: requiredProp,\n    slots = {},\n    slotProps = {},\n    value,\n    ...other\n  } = props;\n  const muiFormControl = useFormControl();\n  const disabled = disabledProp ?? control.props.disabled ?? muiFormControl?.disabled;\n  const required = requiredProp ?? control.props.required;\n  const controlProps = {\n    disabled,\n    required\n  };\n  ['checked', 'name', 'onChange', 'value', 'inputRef'].forEach(key => {\n    if (typeof control.props[key] === 'undefined' && typeof props[key] !== 'undefined') {\n      controlProps[key] = props[key];\n    }\n  });\n  const fcs = formControlState({\n    props,\n    muiFormControl,\n    states: ['error']\n  });\n  const ownerState = {\n    ...props,\n    disabled,\n    labelPlacement,\n    required,\n    error: fcs.error\n  };\n  const classes = useUtilityClasses(ownerState);\n  const externalForwardedProps = {\n    slots,\n    slotProps: {\n      ...componentsProps,\n      ...slotProps\n    }\n  };\n  const [TypographySlot, typographySlotProps] = useSlot('typography', {\n    elementType: Typography,\n    externalForwardedProps,\n    ownerState\n  });\n  let label = labelProp;\n  if (label != null && label.type !== Typography && !disableTypography) {\n    label = /*#__PURE__*/_jsx(TypographySlot, {\n      component: \"span\",\n      ...typographySlotProps,\n      className: clsx(classes.label, typographySlotProps?.className),\n      children: label\n    });\n  }\n  return /*#__PURE__*/_jsxs(FormControlLabelRoot, {\n    className: clsx(classes.root, className),\n    ownerState: ownerState,\n    ref: ref,\n    ...other,\n    children: [/*#__PURE__*/React.cloneElement(control, controlProps), required ? /*#__PURE__*/_jsxs(\"div\", {\n      children: [label, /*#__PURE__*/_jsxs(AsteriskComponent, {\n        ownerState: ownerState,\n        \"aria-hidden\": true,\n        className: classes.asterisk,\n        children: [\"\\u2009\", '*']\n      })]\n    }) : label]\n  });\n});\nprocess.env.NODE_ENV !== \"production\" ? FormControlLabel.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * If `true`, the component appears selected.\n   */\n  checked: PropTypes.bool,\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * @ignore\n   */\n  className: PropTypes.string,\n  /**\n   * The props used for each slot inside.\n   * @default {}\n   * @deprecated use the `slotProps` prop instead. This prop will be removed in a future major release. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n   */\n  componentsProps: PropTypes.shape({\n    typography: PropTypes.object\n  }),\n  /**\n   * A control element. For instance, it can be a `Radio`, a `Switch` or a `Checkbox`.\n   */\n  control: PropTypes.element.isRequired,\n  /**\n   * If `true`, the control is disabled.\n   */\n  disabled: PropTypes.bool,\n  /**\n   * If `true`, the label is rendered as it is passed without an additional typography node.\n   */\n  disableTypography: PropTypes.bool,\n  /**\n   * Pass a ref to the `input` element.\n   */\n  inputRef: refType,\n  /**\n   * A text or an element to be used in an enclosing label element.\n   */\n  label: PropTypes.node,\n  /**\n   * The position of the label.\n   * @default 'end'\n   */\n  labelPlacement: PropTypes.oneOf(['bottom', 'end', 'start', 'top']),\n  /**\n   * @ignore\n   */\n  name: PropTypes.string,\n  /**\n   * Callback fired when the state is changed.\n   *\n   * @param {React.SyntheticEvent} event The event source of the callback.\n   * You can pull out the new checked state by accessing `event.target.checked` (boolean).\n   */\n  onChange: PropTypes.func,\n  /**\n   * If `true`, the label will indicate that the `input` is required.\n   */\n  required: PropTypes.bool,\n  /**\n   * The props used for each slot inside.\n   * @default {}\n   */\n  slotProps: PropTypes.shape({\n    typography: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n  }),\n  /**\n   * The components used for each slot inside.\n   * @default {}\n   */\n  slots: PropTypes.shape({\n    typography: PropTypes.elementType\n  }),\n  /**\n   * The system prop that allows defining system overrides as well as additional CSS styles.\n   */\n  sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n  /**\n   * The value of the component.\n   */\n  value: PropTypes.any\n} : void 0;\nexport default 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+{"version":3,"file":"ui-components.es54.js","sources":["../src/components/BiosampleTable/AggregateDownload.tsx"],"sourcesContent":["import {\n  Button,\n  Tooltip,\n  Box,\n  Checkbox,\n  Dialog,\n  DialogActions,\n  DialogContent,\n  DialogTitle,\n  FormControlLabel,\n  Stack,\n  Typography,\n  Divider,\n  IconButton,\n} from \"@mui/material\";\nimport { useCallback, useMemo, useState } from \"react\";\nimport { Download } from \"@mui/icons-material\";\nimport { ontologyDownloadMap } from \"./ontologyDownloads\";\nimport { fetchFileSize, formatFileSize } from \"./helpers\";\nimport { useDownloadContext } from \"./DownloadContext\";\n\nexport type AggregateDownloadProps = {\n  ontology: string;\n};\n\n/**\n *\n * @param ontology\n * Finds available aggregate file urls for the given ontology in the form `[noccl, ccl]`\n */\n\nexport const getAvailableFiles = (ontology: string) => {\n  const key = ontology.toLowerCase().replace(/\\s+/g, \"_\");\n  return ontologyDownloadMap[key] ?? [];\n};\n\nexport const AggregateDownloadButton = ({ ontology }: AggregateDownloadProps) => {\n  const [isDialogOpen, setIsDialogOpen] = useState(false);\n  const [noccl, setNoccl] = useState(false);\n  const [all, setAll] = useState(false);\n  const [nocclFileSize, setNocclFileSize] = useState<number | null>(null);\n  const [allFileSize, setAllFileSize] = useState<number | null>(null);\n  const { onDownload } = useDownloadContext();\n\n  const availibleDownloads = getAvailableFiles(ontology);\n\n  const ncFile = availibleDownloads.find((d) => d.label === \"Excluding Cancer Cell Lines\")?.filename ?? undefined;\n  const allFile = availibleDownloads.find((d) => d.label === \"All Biosamples\")?.filename ?? undefined;\n\n  const handleOpenDialog = () => {\n    if (ncFile && !nocclFileSize) fetchFileSize(`https://downloads.wenglab.org/${ncFile}`, setNocclFileSize);\n    if (allFile && !allFileSize) fetchFileSize(`https://downloads.wenglab.org/${allFile}`, setAllFileSize);\n    setIsDialogOpen(true);\n  };\n\n  const handleDownload = useCallback(() => {\n    if (!availibleDownloads || availibleDownloads.length === 0) return;\n\n    const filesToDownload: { filename: string; label: string }[] = [];\n    if (noccl && ncFile) filesToDownload.push({ filename: ncFile, label: \"excluding_cancer_cell_lines\" });\n    if (all && allFile) filesToDownload.push({ filename: allFile, label: \"all_biosamples\" });\n\n    filesToDownload.forEach(({ filename, label }, index) => {\n      const url = `https://downloads.wenglab.org/${filename}`;\n\n      setTimeout(() => {\n        if (onDownload) {\n          // Use descriptive name: ontology_aggregate_ccres_label\n          const name = `${ontology}_aggregate_ccres_${label}`;\n          onDownload(url, name);\n        }\n\n        const link = document.createElement(\"a\");\n        link.href = url;\n        link.download = filename;\n\n        document.body.appendChild(link);\n        link.click();\n        document.body.removeChild(link);\n      }, index * 500); // 500ms delay between downloads (some browsers prevent against mutliple downloads at once)\n    });\n  }, [all, allFile, availibleDownloads, ncFile, noccl, onDownload, ontology]);\n\n  return (\n    <>\n      <Tooltip\n        title={\n          availibleDownloads.length === 0 ? (\n            \"No Aggregate cCRE Download Options\"\n          ) : (\n            <Box>\n              Download cCREs in {ontology.charAt(0).toUpperCase() + ontology.slice(1)}:\n              <ul style={{ margin: 0, paddingLeft: 16 }}>\n                {availibleDownloads.map((d) => (\n                  <li key={d.filename}>{d.label}</li>\n                ))}\n              </ul>\n              (Opens Download Dialog)\n            </Box>\n          )\n        }\n        placement=\"left\"\n        arrow\n      >\n        <span>\n          <IconButton\n            onClick={(e) => {\n              e.stopPropagation();\n              handleOpenDialog();\n            }}\n            disabled={availibleDownloads.length === 0}\n          >\n            <Download />\n          </IconButton>\n        </span>\n      </Tooltip>\n      <Dialog\n        open={isDialogOpen}\n        onClose={(event) => {\n          (event as React.MouseEvent).stopPropagation();\n          setIsDialogOpen(false);\n        }}\n        aria-labelledby=\"export-dialog-title\"\n        disableScrollLock\n        slotProps={{\n          backdrop: {\n            sx: {\n              backgroundColor: \"rgba(255, 255, 255, 0.1)\",\n              backdropFilter: \"blur(2px)\",\n            },\n          },\n        }}\n        onClick={(e) => e.stopPropagation()}\n      >\n        <DialogTitle id=\"export-dialog-title\">\n          Download cCREs in {ontology.charAt(0).toUpperCase() + ontology.slice(1)}:\n        </DialogTitle>\n        <DialogContent>\n          <Stack>\n            <FormControlLabel\n              control={<Checkbox checked={all} onChange={(e) => setAll(e.target.checked)} disabled={!allFile} />}\n              label={`Aggregate cCREs (all biosamples)${allFileSize ? \" - \" + formatFileSize(allFileSize) : \"\"}`}\n            />\n            <FormControlLabel\n              control={<Checkbox checked={noccl} onChange={(e) => setNoccl(e.target.checked)} disabled={!ncFile} />}\n              label={`Aggregate cCREs (excluding cancer cell lines)${nocclFileSize ? \" - \" + formatFileSize(nocclFileSize) : \"\"}`}\n            />\n            {availibleDownloads.length <= 1 && (\n              <>\n                <Divider sx={{ marginTop: 1 }} />\n                <Typography marginTop={1}>\n                  <strong>No cancerous cell lines available in this tissue</strong>\n                </Typography>\n              </>\n            )}\n          </Stack>\n        </DialogContent>\n        <DialogActions>\n          <Button\n            onClick={() => {\n              setIsDialogOpen(false);\n            }}\n          >\n            Cancel\n          </Button>\n          <Button\n            variant=\"contained\"\n            onClick={() => {\n              handleDownload();\n              setIsDialogOpen(false);\n            }}\n          >\n            Download\n          </Button>\n        </DialogActions>\n      </Dialog>\n    </>\n  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package/dist/ui-components.es55.js

@@ -1,266 +1,212 @@
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-import o from "./ui-components.es89.js";
-import { clsx as g } from "./ui-components.es102.js";
-import z from "./ui-components.es208.js";
-import w from "./ui-components.es209.js";
-import $ from "./ui-components.es210.js";
-import B from "./ui-components.es211.js";
-import E from "./ui-components.es143.js";
-import b, { getCheckboxUtilityClass as F } from "./ui-components.es212.js";
-import N from "./ui-components.es105.js";
-import I from "./ui-components.es108.js";
-import D from "./ui-components.es123.js";
-import { j as i } from "./ui-components.es15.js";
-import { useDefaultProps as M } from "./ui-components.es92.js";
-import U from "./ui-components.es213.js";
-import a from "./ui-components.es113.js";
-import V from "./ui-components.es114.js";
-import q from "./ui-components.es48.js";
-const _ = (e) => {
-  const {
-    classes: t,
-    indeterminate: r,
-    color: s,
-    size: c
-  } = e, l = {
-    root: ["root", r && "indeterminate", `color${a(s)}`, `size${a(c)}`]
-  }, p = V(l, F, t);
-  return {
-    ...t,
-    // forward the disabled and checked classes to the SwitchBase
-    ...p
-  };
-}, A = q(z, {
-  shouldForwardProp: (e) => E(e) || e === "classes",
-  name: "MuiCheckbox",
-  slot: "Root",
-  overridesResolver: (e, t) => {
-    const {
-      ownerState: r
-    } = e;
-    return [t.root, r.indeterminate && t.indeterminate, t[`size${a(r.size)}`], r.color !== "default" && t[`color${a(r.color)}`]];
-  }
-})(N(({
-  theme: e
-}) => ({
-  color: (e.vars || e).palette.text.secondary,
-  variants: [{
-    props: {
-      color: "default",
-      disableRipple: !1
-    },
-    style: {
-      "&:hover": {
-        backgroundColor: e.alpha((e.vars || e).palette.action.active, (e.vars || e).palette.action.hoverOpacity)
-      }
-    }
-  }, ...Object.entries(e.palette).filter(I()).map(([t]) => ({
-    props: {
-      color: t,
-      disableRipple: !1
+function p(t, c) {
+  const e = [];
+  t = t.replace(/,/g, "");
+  let i, o, r;
+  if (t.includes(":") && t.includes("-"))
+    i = t.split(":")[0], o = parseInt(t.split(":")[1].split("-")[0]) || 0, r = parseInt(t.split(":")[1].split("-")[1]) || o + 1e3;
+  else if (t.includes("	")) {
+    const [h, l, d] = t.split("	");
+    i = h, o = parseInt(l), r = parseInt(d);
+  } else
+    return e;
+  const s = i.replace(/chrx$/, "chrX").replace(/chry$/, "chrY"), a = m[c][s];
+  return r > o && a && r <= a && e.push({
+    title: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    domain: {
+      chromosome: s,
+      start: o,
+      end: r
     },
-    style: {
-      "&:hover": {
-        backgroundColor: e.alpha((e.vars || e).palette[t].main, (e.vars || e).palette.action.hoverOpacity)
-      }
-    }
-  })), ...Object.entries(e.palette).filter(I()).map(([t]) => ({
-    props: {
-      color: t
+    description: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    type: "Coordinate"
+  }), e;
+}
+function n(t, c, e) {
+  return t ? t.slice(0, c).map((i) => ({
+    title: e.getTitle(i),
+    description: e.getDescription(i),
+    domain: {
+      chromosome: i.coordinates.chromosome,
+      start: i.coordinates.start,
+      end: i.coordinates.end
     },
-    style: {
-      [`&.${b.checked}, &.${b.indeterminate}`]: {
-        color: (e.vars || e).palette[t].main
-      },
-      [`&.${b.disabled}`]: {
-        color: (e.vars || e).palette.action.disabled
-      }
-    }
-  })), {
-    // Should be last to override other colors
-    props: {
-      disableRipple: !1
-    },
-    style: {
-      // Reset on touch devices, it doesn't add specificity
-      "&:hover": {
-        "@media (hover: none)": {
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-    externalForwardedProps: {
-      slots: k,
-      slotProps: C,
-      ...S
+    type: e.type
+  })) : [];
+}
+function g(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.id,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "SNP"
+  });
+}
+function $(t, c, e) {
+  return n(t, c, {
+    getTitle: (i) => i.name,
+    getDescription: (i) => {
+      let o = "";
+      return i.versions.forEach((r, s) => o += "V" + r.version + " " + r.id + (s === i.versions.length - 1 ? "" : `
+`)), `${i.description}
+${o}
+${i.coordinates.chromosome}:${i.coordinates.start}-${i.coordinates.end}`;
     },
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-      slotProps: {
-        input: U(typeof f == "function" ? f(m) : f, {
-          "data-indeterminate": n
-        })
-      }
-    }
+    type: "Gene"
   });
-  return /* @__PURE__ */ i.jsx(R, {
-    ...T,
-    classes: P
+}
+function u(t, c) {
+  return t.slice(0, c).map((e) => ({
+    title: e.disease_trait,
+    description: `${e.author.replace("_", " ")} (${e.studyid.split("-")[1]})
+${e.parent_terms.join(",")}
+ ${e.has_enrichment_info ? "Biosample Enrichment" : ""}`,
+    domain: void 0,
+    id: e.studyid,
+    type: "Study"
+  }));
+}
+function y(t) {
+  return t.map((c) => ({
+    title: c.label,
+    description: c.description ?? "",
+    domain: void 0,
+    id: c.value,
+    type: "Ome"
+  }));
+}
+function v(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "iCRE"
   });
-});
-process.env.NODE_ENV !== "production" && (K.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * If `true`, the component is checked.
-   */
-  checked: o.bool,
-  /**
-   * The icon to display when the component is checked.
-   * @default <CheckBoxIcon />
-   */
-  checkedIcon: o.node,
-  /**
-   * Override or extend the styles applied to the component.
-   */
-  classes: o.object,
-  /**
-   * @ignore
-   */
-  className: o.string,
-  /**
-   * The color of the component.
-   * It supports both default and custom theme colors, which can be added as shown in the
-   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).
-   * @default 'primary'
-   */
-  color: o.oneOfType([o.oneOf(["default", "primary", "secondary", "error", "info", "success", "warning"]), o.string]),
-  /**
-   * The default checked state. Use when the component is not controlled.
-   */
-  defaultChecked: o.bool,
-  /**
-   * If `true`, the component is disabled.
-   * @default false
-   */
-  disabled: o.bool,
-  /**
-   * If `true`, the ripple effect is disabled.
-   * @default false
-   */
-  disableRipple: o.bool,
-  /**
-   * The icon to display when the component is unchecked.
-   * @default <CheckBoxOutlineBlankIcon />
-   */
-  icon: o.node,
-  /**
-   * The id of the `input` element.
-   */
-  id: o.string,
-  /**
-   * If `true`, the component appears indeterminate.
-   * This does not set the native input element to indeterminate due
-   * to inconsistent behavior across browsers.
-   * However, we set a `data-indeterminate` attribute on the `input`.
-   * @default false
-   */
-  indeterminate: o.bool,
-  /**
-   * The icon to display when the component is indeterminate.
-   * @default <IndeterminateCheckBoxIcon />
-   */
-  indeterminateIcon: o.node,
-  /**
-   * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Reference/Elements/input#attributes) applied to the `input` element.
-   * @deprecated Use `slotProps.input` instead. This prop will be removed in a future major release. See [Migrating from deprecated APIs](/material-ui/migration/migrating-from-deprecated-apis/) for more details.
-   */
-  inputProps: o.object,
-  /**
-   * Callback fired when the state is changed.
-   *
-   * @param {React.ChangeEvent<HTMLInputElement>} event The event source of the callback.
-   * You can pull out the new checked state by accessing `event.target.checked` (boolean).
-   */
-  onChange: o.func,
-  /**
-   * If `true`, the `input` element is required.
-   * @default false
-   */
-  required: o.bool,
-  /**
-   * The size of the component.
-   * `small` is equivalent to the dense checkbox styling.
-   * @default 'medium'
-   */
-  size: o.oneOfType([o.oneOf(["medium", "small"]), o.string]),
-  /**
-   * The props used for each slot inside.
-   * @default {}
-   */
-  slotProps: o.shape({
-    input: o.oneOfType([o.func, o.object]),
-    root: o.oneOfType([o.func, o.object])
-  }),
-  /**
-   * The components used for each slot inside.
-   * @default {}
-   */
-  slots: o.shape({
-    input: o.elementType,
-    root: o.elementType
-  }),
-  /**
-   * The system prop that allows defining system overrides as well as additional CSS styles.
-   */
-  sx: o.oneOfType([o.arrayOf(o.oneOfType([o.func, o.object, o.bool])), o.func, o.object]),
-  /**
-   * The value of the component. The DOM API casts this to a string.
-   * The browser uses "on" as the default value.
-   */
-  value: o.any
-});
+}
+function f(t, c) {
+  return n(t, c, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}${e.isiCRE ? ", iCRE" : ""}`,
+    type: "cCRE"
+  });
+}
+function R(t, c) {
+  return t.filter((e) => e.input !== e.v4_match_or_intersecting).slice(0, c).map((e) => {
+    const i = e.input_region, o = e.v4_match_or_intersecting;
+    return {
+      title: e.input,
+      // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon
+      // At most two overlapping v4 cCREs are ever returned, so a single (non-global) comma replace is sufficient for the "a, b" rendering.
+      description: `(Registry ${e.input_latest_previous_version})
+${e.input_region}
+${o ? `Intersects v4 cCRE${o.includes(",") ? "s" : ""}: ${o.replace(",", ", ")}` : "No intersecting v4 cCREs"}`,
+      domain: {
+        chromosome: i.split(":")[0],
+        start: parseInt(i.split(":")[1].split("-")[0]),
+        end: parseInt(i.split(":")[1].split("-")[1])
+      },
+      type: "Legacy cCRE"
+    };
+  });
+}
+const b = [{
+  label: "Proteomics",
+  value: "proteomics",
+  keywords: ["protein", "mass spec"]
+}, {
+  label: "WGS",
+  value: "WGS",
+  keywords: ["whole genome sequencing", "genome sequencing", "genomics"],
+  description: "Whole Genome Sequencing"
+}, {
+  label: "WGBS",
+  value: "WGBS",
+  keywords: ["whole genome bisulfite sequencing", "epigenomics", "methylation"],
+  description: "Whole Genome Bisulfite Sequencing"
+}, {
+  label: "ATAC",
+  value: "ATAC",
+  keywords: ["chromatin accessibility", "atac-seq"],
+  description: "ATAC-seq"
+}, {
+  label: "RNA",
+  value: "RNA",
+  keywords: ["rna-seq", "transcriptomics", "gene expression"],
+  description: "RNA-seq"
+}, {
+  label: "Metabolomics",
+  value: "metabolomics"
+}, {
+  label: "Lipidomics",
+  value: "lipidomics"
+}, {
+  label: "Metallomics",
+  value: "metallomics"
+}, {
+  label: "Exposomics",
+  value: "exposomics"
+}], m = {
+  GRCh38: {
+    chr1: 248956422,
+    chr2: 242193529,
+    chr3: 198295559,
+    chr4: 190214555,
+    chr5: 181538259,
+    chr6: 170805979,
+    chr7: 159345973,
+    chr8: 145138636,
+    chr9: 138394717,
+    chr10: 133797422,
+    chr11: 135086622,
+    chr12: 133275309,
+    chr13: 114364328,
+    chr14: 107043718,
+    chr15: 101991189,
+    chr16: 90338345,
+    chr17: 83257441,
+    chr18: 80373285,
+    chr19: 58617616,
+    chr20: 64444167,
+    chr21: 46709983,
+    chr22: 50818468,
+    chrX: 156040895,
+    chrY: 57227415
+  },
+  mm10: {
+    chr1: 195471971,
+    chr2: 182113224,
+    chr3: 160039680,
+    chr4: 156508116,
+    chr5: 151834684,
+    chr6: 149736546,
+    chr7: 145441459,
+    chr8: 129401213,
+    chr9: 124595110,
+    chr10: 130694993,
+    chr11: 122082543,
+    chr12: 120129022,
+    chr13: 120421639,
+    chr14: 124902244,
+    chr15: 104043685,
+    chr16: 98207768,
+    chr17: 94987271,
+    chr18: 90702639,
+    chr19: 61431566,
+    chrX: 171031299,
+    chrY: 91744698
+  }
+};
+function C(t) {
+  const c = t.includes("	"), e = t.includes("-"), i = t.length >= 4 && /^[0-9xyXY]$/.test(t[3]);
+  return (c || e) && t.startsWith("chr") && i;
+}
 export {
-  K as default
+  b as OmesList,
+  f as ccreResultList,
+  $ as geneResultList,
+  p as getCoordinates,
+  v as icreResultList,
+  C as isDomain,
+  R as legacyCcreResultList,
+  y as omeResultsList,
+  g as snpResultList,
+  u as studyResultList
 };
 //# sourceMappingURL=ui-components.es55.js.map

package/dist/ui-components.es55.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es55.js","sources":["../../../node_modules/.pnpm/@mui+material@7.3.9_@emotion+react@11.14.0_@types+react@19.2.14_react@19.2.4__@emotion+_5efc65b7a21bb615fd4ee8d4bf58b896/node_modules/@mui/material/esm/Checkbox/Checkbox.js"],"sourcesContent":["'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport SwitchBase from \"../internal/SwitchBase.js\";\nimport CheckBoxOutlineBlankIcon from \"../internal/svg-icons/CheckBoxOutlineBlank.js\";\nimport CheckBoxIcon from \"../internal/svg-icons/CheckBox.js\";\nimport IndeterminateCheckBoxIcon from \"../internal/svg-icons/IndeterminateCheckBox.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport checkboxClasses, { getCheckboxUtilityClass } from \"./checkboxClasses.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { mergeSlotProps } from \"../utils/index.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n  const {\n    classes,\n    indeterminate,\n    color,\n    size\n  } = ownerState;\n  const slots = {\n    root: ['root', indeterminate && 'indeterminate', `color${capitalize(color)}`, `size${capitalize(size)}`]\n  };\n  const composedClasses = composeClasses(slots, getCheckboxUtilityClass, classes);\n  return {\n    ...classes,\n    // forward the disabled and checked classes to the SwitchBase\n    ...composedClasses\n  };\n};\nconst CheckboxRoot = styled(SwitchBase, {\n  shouldForwardProp: prop => rootShouldForwardProp(prop) || prop === 'classes',\n  name: 'MuiCheckbox',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.root, ownerState.indeterminate && styles.indeterminate, styles[`size${capitalize(ownerState.size)}`], ownerState.color !== 'default' && styles[`color${capitalize(ownerState.color)}`]];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  color: (theme.vars || theme).palette.text.secondary,\n  variants: [{\n    props: {\n      color: 'default',\n      disableRipple: false\n    },\n    style: {\n      '&:hover': {\n        backgroundColor: theme.alpha((theme.vars || theme).palette.action.active, (theme.vars || theme).palette.action.hoverOpacity)\n      }\n    }\n  }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n    props: {\n      color,\n      disableRipple: false\n    },\n    style: {\n      '&:hover': {\n        backgroundColor: theme.alpha((theme.vars || theme).palette[color].main, (theme.vars || theme).palette.action.hoverOpacity)\n      }\n    }\n  })), ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n    props: {\n      color\n    },\n    style: {\n      [`&.${checkboxClasses.checked}, &.${checkboxClasses.indeterminate}`]: {\n        color: (theme.vars || theme).palette[color].main\n      },\n      [`&.${checkboxClasses.disabled}`]: {\n        color: (theme.vars || theme).palette.action.disabled\n      }\n    }\n  })), {\n    // Should be last to override other colors\n    props: {\n      disableRipple: false\n    },\n    style: {\n      // Reset on touch devices, it doesn't add specificity\n      '&:hover': {\n        '@media (hover: none)': {\n          backgroundColor: 'transparent'\n        }\n      }\n    }\n  }]\n})));\nconst defaultCheckedIcon = /*#__PURE__*/_jsx(CheckBoxIcon, {});\nconst defaultIcon = /*#__PURE__*/_jsx(CheckBoxOutlineBlankIcon, {});\nconst defaultIndeterminateIcon = /*#__PURE__*/_jsx(IndeterminateCheckBoxIcon, {});\nconst Checkbox = /*#__PURE__*/React.forwardRef(function Checkbox(inProps, ref) {\n  const props = useDefaultProps({\n    props: inProps,\n    name: 'MuiCheckbox'\n  });\n  const {\n    checkedIcon = defaultCheckedIcon,\n    color = 'primary',\n    icon: iconProp = defaultIcon,\n    indeterminate = false,\n    indeterminateIcon: indeterminateIconProp = defaultIndeterminateIcon,\n    inputProps,\n    size = 'medium',\n    disableRipple = false,\n    className,\n    slots = {},\n    slotProps = {},\n    ...other\n  } = props;\n  const icon = indeterminate ? indeterminateIconProp : iconProp;\n  const indeterminateIcon = indeterminate ? indeterminateIconProp : checkedIcon;\n  const ownerState = {\n    ...props,\n    disableRipple,\n    color,\n    indeterminate,\n    size\n  };\n  const classes = useUtilityClasses(ownerState);\n  const externalInputProps = slotProps.input ?? inputProps;\n  const [RootSlot, rootSlotProps] = useSlot('root', {\n    ref,\n    elementType: CheckboxRoot,\n    className: clsx(classes.root, className),\n    shouldForwardComponentProp: true,\n    externalForwardedProps: {\n      slots,\n      slotProps,\n      ...other\n    },\n    ownerState,\n    additionalProps: {\n      type: 'checkbox',\n      icon: /*#__PURE__*/React.cloneElement(icon, {\n        fontSize: icon.props.fontSize ?? size\n      }),\n      checkedIcon: /*#__PURE__*/React.cloneElement(indeterminateIcon, {\n        fontSize: indeterminateIcon.props.fontSize ?? size\n      }),\n      disableRipple,\n      slots,\n      slotProps: {\n        input: mergeSlotProps(typeof externalInputProps === 'function' ? externalInputProps(ownerState) : externalInputProps, {\n          'data-indeterminate': indeterminate\n        })\n      }\n    }\n  });\n  return /*#__PURE__*/_jsx(RootSlot, {\n    ...rootSlotProps,\n    classes: classes\n  });\n});\nprocess.env.NODE_ENV !== \"production\" ? Checkbox.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * If `true`, the component is checked.\n   */\n  checked: PropTypes.bool,\n  /**\n   * The icon to display when the component is checked.\n   * @default <CheckBoxIcon />\n   */\n  checkedIcon: PropTypes.node,\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * @ignore\n   */\n  className: PropTypes.string,\n  /**\n   * The color of the component.\n   * It supports both default and custom theme colors, which can be added as shown in the\n   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n   * @default 'primary'\n   */\n  color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n  /**\n   * The default checked state. Use when the component is not controlled.\n   */\n  defaultChecked: PropTypes.bool,\n  /**\n   * If `true`, the component is disabled.\n   * @default false\n   */\n  disabled: PropTypes.bool,\n  /**\n   * If `true`, the ripple effect is disabled.\n   * @default false\n   */\n  disableRipple: PropTypes.bool,\n  /**\n   * The icon to display when the component is unchecked.\n   * @default <CheckBoxOutlineBlankIcon />\n   */\n  icon: PropTypes.node,\n  /**\n   * The id of the `input` element.\n   */\n  id: PropTypes.string,\n  /**\n   * If `true`, the component appears indeterminate.\n   * This does not set the native input element to indeterminate due\n   * to inconsistent behavior across browsers.\n   * However, we set a `data-indeterminate` attribute on the `input`.\n   * @default false\n   */\n  indeterminate: PropTypes.bool,\n  /**\n   * The icon to display when the component is indeterminate.\n   * @default <IndeterminateCheckBoxIcon />\n   */\n  indeterminateIcon: PropTypes.node,\n  /**\n   * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Reference/Elements/input#attributes) applied to the `input` element.\n   * @deprecated Use `slotProps.input` instead. This prop will be removed in a future major release. See [Migrating from deprecated APIs](/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n   */\n  inputProps: PropTypes.object,\n  /**\n   * Callback fired when the state is changed.\n   *\n   * @param {React.ChangeEvent<HTMLInputElement>} event The event source of the callback.\n   * You can pull out the new checked state by accessing `event.target.checked` (boolean).\n   */\n  onChange: PropTypes.func,\n  /**\n   * If `true`, the `input` element is required.\n   * @default false\n   */\n  required: PropTypes.bool,\n  /**\n   * The size of the component.\n   * `small` is equivalent to the dense checkbox styling.\n   * @default 'medium'\n   */\n  size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n  /**\n   * The props used for each slot inside.\n   * @default {}\n   */\n  slotProps: PropTypes.shape({\n    input: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n    root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n  }),\n  /**\n   * The components used for each slot inside.\n   * @default {}\n   */\n  slots: PropTypes.shape({\n    input: PropTypes.elementType,\n    root: PropTypes.elementType\n  }),\n  /**\n   * The system prop that allows defining system overrides as well as additional CSS styles.\n   */\n  sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n  /**\n   * The value of the component. The DOM API casts this to a string.\n   * The browser uses \"on\" as the default value.\n   */\n  value: PropTypes.any\n} : void 0;\nexport default 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\"\" : \"\\n\"))\n      );\n      return `${result.description}\\n${idStr}\\n${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`;\n    },\n    type: \"Gene\",\n  });\n}\n\nexport function studyResultList(results: StudyResponse[], limit: number): Result[] {\n  return results.slice(0, limit).map((result) => ({\n    title: result.disease_trait,\n    description: `${result.author.replace(\"_\", \" \")} (${result.studyid.split(\"-\")[1]})\\n${result.parent_terms.join(\",\")}\\n ${result.has_enrichment_info ? \"Biosample Enrichment\" : \"\"}`,\n    domain: undefined,\n    id: result.studyid,\n    type: \"Study\",\n  }));\n}\n\nexport function omeResultsList(results: OmeOption[]): Result[] {\n  return results.map((ome) => ({\n    title: ome.label,\n    description: ome.description ?? \"\",\n    domain: undefined,\n    id: ome.value,\n    type: \"Ome\",\n  }));\n}\n\nexport function icreResultList(results: ICREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"iCRE\",\n  });\n}\n\nexport function ccreResultList(results: CCREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${\n        result.coordinates.end\n      }${result.isiCRE ? \", iCRE\" : \"\"}`,\n    type: \"cCRE\",\n  });\n}\n\nexport function legacyCcreResultList(results: LegacyCcreResponse[], limit: number): Result[] {\n  return results\n    .filter((result) => result.input !== result.v4_match_or_intersecting) //filter v4 cCREs\n    .slice(0, limit)\n    .map((result) => {\n      const region = result.input_region;\n      const overlapping = result.v4_match_or_intersecting\n      return {\n        title: result.input,\n        // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon\n        // At most two overlapping v4 cCREs are ever returned, so a single (non-global) comma replace is sufficient for the \"a, b\" rendering.\n        description: `(Registry ${result.input_latest_previous_version})\\n${result.input_region}\\n${overlapping ? `Intersects v4 cCRE${overlapping.includes(\",\") ? \"s\" : \"\"}: ${overlapping.replace(\",\", \", \")}` : \"No intersecting v4 cCREs\"}`,\n        domain: {\n          chromosome: region.split(\":\")[0],\n          start: parseInt(region.split(\":\")[1].split(\"-\")[0]),\n          end: parseInt(region.split(\":\")[1].split(\"-\")[1]),\n        },\n        type: \"Legacy cCRE\",\n      };\n    });\n}\n\nexport interface OmeOption {\n  label: string;\n  value: string;\n  keywords?: string[];\n  description?: string;\n}\n//allows the user to search more freely and get the result they are looking for\n//will look at label as well as keywords\nexport const OmesList: OmeOption[] = [\n  {\n    label: \"Proteomics\",\n    value: \"proteomics\",\n    keywords: [\"protein\", \"mass spec\"],\n  },\n  {\n    label: \"WGS\",\n    value: \"WGS\",\n    keywords: [\"whole genome sequencing\", \"genome sequencing\", \"genomics\"],\n    description: \"Whole Genome Sequencing\"\n  },\n  {\n    label: \"WGBS\",\n    value: \"WGBS\",\n    keywords: [\"whole genome bisulfite sequencing\", \"epigenomics\", \"methylation\"],\n    description: \"Whole Genome Bisulfite Sequencing\"\n  },\n  {\n    label: \"ATAC\",\n    value: \"ATAC\",\n    keywords: [\"chromatin accessibility\", \"atac-seq\"],\n    description: \"ATAC-seq\"\n  },\n  {\n    label: \"RNA\",\n    value: \"RNA\",\n    keywords: [\"rna-seq\", \"transcriptomics\", \"gene expression\"],\n    description: \"RNA-seq\"\n  },\n  {\n    label: \"Metabolomics\",\n    value: \"metabolomics\",\n  },\n  {\n    label: \"Lipidomics\",\n    value: \"lipidomics\",\n  },\n  {\n    label: \"Metallomics\",\n    value: \"metallomics\",\n  },\n  {\n    label: \"Exposomics\",\n    value: \"exposomics\",\n  },\n];\n\n// Object to store chromosome lengths for GRCh38 and mm10\nconst chromosomeLengths: { [key: string]: { [key: string]: number } } = {\n  GRCh38: {\n    chr1: 248956422,\n    chr2: 242193529,\n    chr3: 198295559,\n    chr4: 190214555,\n    chr5: 181538259,\n    chr6: 170805979,\n    chr7: 159345973,\n    chr8: 145138636,\n    chr9: 138394717,\n    chr10: 133797422,\n    chr11: 135086622,\n    chr12: 133275309,\n    chr13: 114364328,\n    chr14: 107043718,\n    chr15: 101991189,\n    chr16: 90338345,\n    chr17: 83257441,\n    chr18: 80373285,\n    chr19: 58617616,\n    chr20: 64444167,\n    chr21: 46709983,\n    chr22: 50818468,\n    chrX: 156040895,\n    chrY: 57227415,\n  },\n  mm10: {\n    chr1: 195471971,\n    chr2: 182113224,\n    chr3: 160039680,\n    chr4: 156508116,\n    chr5: 151834684,\n    chr6: 149736546,\n    chr7: 145441459,\n    chr8: 129401213,\n    chr9: 124595110,\n    chr10: 130694993,\n    chr11: 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