@weng-lab/ui-components 3.0.0-beta.0 → 3.0.1

package/dist/ui-components.es56.js

@@ -1,39 +1,57 @@
-import { j as r } from "./ui-components.es15.js";
-import { c as d } from "./ui-components.es16.js";
-import { Typography as h, Box as p, Tooltip as j } from "@mui/material";
-import y from "./ui-components.es21.js";
-const S = (x) => {
-  const e = d.c(13), {
-    params: i,
-    tooltipTitle: f,
-    originalRenderHeader: s
-  } = x;
-  let n;
-  e[0] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (n = {
-    display: "flex",
-    alignItems: "center",
-    gap: 1
-  }, e[0] = n) : n = e[0];
-  let m;
-  e[1] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (m = {
-    overflow: "hidden",
-    textOverflow: "ellipsis"
-  }, e[1] = m) : m = e[1];
-  let t;
-  e[2] !== s || e[3] !== i ? (t = s ? s(i) : /* @__PURE__ */ r.jsx(h, { variant: "subtitle2", noWrap: !0, children: i.colDef.headerName || i.field }), e[2] = s, e[3] = i, e[4] = t) : t = e[4];
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-  e[5] !== t ? (l = /* @__PURE__ */ r.jsx(p, { sx: m, children: t }), e[5] = t, e[6] = l) : l = e[6];
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-    l,
-    o
-  ] }), e[10] = l, e[11] = o, e[12] = c) : c = e[12], c;
+const s = async (e, n) => {
+  try {
+    const a = await fetch(e, {
+      method: "HEAD"
+    });
+    if (!a.ok)
+      throw new Error("Error fetching file size for " + e);
+    const t = a.headers.get("Content-Length");
+    t && n(parseInt(t, 10));
+  } catch (a) {
+    console.error(a), n(-1);
+  }
+}, o = (e) => e === -1 ? "Unknown Size" : (e / 1e6).toFixed(1) + " MB", i = (e) => {
+  switch (e) {
+    case "atac":
+      return "ATAC";
+    case "ctcf":
+      return "CTCF";
+    case "dnase":
+      return "DNase";
+    case "h3k27ac":
+      return "H3K27ac";
+    case "h3k4me3":
+      return "H3K4me3";
+  }
+};
+function f(e) {
+  const {
+    dnase: n,
+    h3k27ac: a,
+    h3k4me3: t,
+    ctcf: c,
+    atac: r
+  } = e;
+  return n && a && t && c && r ? "All assays available" : !n && !a && !t && !c && !r ? "No assays available" : `Available:
+${n ? `DNase
+` : ""}${a ? `H3K27ac
+` : ""}${t ? `H3K4me3
+` : ""}${c ? `CTCF
+` : ""}${r ? `ATAC
+` : ""}`;
+}
+const h = {
+  dnase: "#06DA93",
+  h3k27ac: "#FFCD00",
+  h3k4me3: "#FF0000",
+  ctcf: "#00B0F0",
+  atac: "#02c7b9"
 };
 export {
-  S as HeaderWithTooltip
+  h as ASSAY_COLORS,
+  f as assayHoverInfo,
+  s as fetchFileSize,
+  i as formatAssay,
+  o as formatFileSize
 };
 //# sourceMappingURL=ui-components.es56.js.map

package/dist/ui-components.es56.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ui-components.es56.js","sources":["../src/components/BiosampleTable/helpers.ts"],"sourcesContent":["/**\n * \n * @param url \n * @param handleSetState \n * \n * Attempts to fetch the file size, and sets state with given fn. -1 if unsucessful\n */\nexport const fetchFileSize = async (url: string, handleSetState: (fileSize: number) => void) => {\n  try {\n    const response = await fetch(url, { method: \"HEAD\" });\n    if (!response.ok) {\n      throw new Error(\"Error fetching file size for \" + url)\n    }\n    const contentLength = response.headers.get(\"Content-Length\");\n    if (contentLength) {\n      handleSetState(parseInt(contentLength, 10));\n    }\n  } catch (error) {\n    console.error(error);\n    handleSetState(-1)\n  }\n};\n\nexport const formatFileSize = (fileSize: number) => fileSize === -1 ? \"Unknown Size\" : (fileSize / 1000000).toFixed(1) + \" MB\"\n/**\n *\n * @param assay\n * @returns Formatted assay name\n */\nexport const formatAssay = (assay: CcreAssay) => {\n  switch (assay) {\n    case \"atac\":\n      return \"ATAC\";\n    case \"ctcf\":\n      return \"CTCF\";\n    case \"dnase\":\n      return \"DNase\";\n    case \"h3k27ac\":\n      return \"H3K27ac\";\n    case \"h3k4me3\":\n      return \"H3K4me3\";\n  }\n};\n\nimport { CcreAssay } from \"./types\";\n\n/**\n *\n * @param assays\n * @returns string to display on hover above available assay wheel\n */\nexport function assayHoverInfo(assays: Record<CcreAssay, string | null>) {\n  const { dnase, h3k27ac, h3k4me3, ctcf, atac } = assays;\n\n  if (dnase && h3k27ac && h3k4me3 && ctcf && atac) {\n    return \"All assays available\";\n  } else if (!dnase && !h3k27ac && !h3k4me3 && !ctcf && !atac) {\n    return \"No assays available\";\n  } else\n    return `Available:\\n${dnase ? \"DNase\\n\" : \"\"}${h3k27ac ? \"H3K27ac\\n\" : \"\"}${h3k4me3 ? \"H3K4me3\\n\" : \"\"}${ctcf ? \"CTCF\\n\" : \"\"}${\n      atac ? \"ATAC\\n\" : \"\"\n    }`;\n}\n\nexport const ASSAY_COLORS: Record<CcreAssay, string> = {\n  dnase: \"#06DA93\",\n  h3k27ac: \"#FFCD00\",\n  h3k4me3: \"#FF0000\",\n  ctcf: \"#00B0F0\",\n  atac: \"#02c7b9\",\n};"],"names":["fetchFileSize","url","handleSetState","response","fetch","method","ok","Error","contentLength","headers","get","parseInt","error","console","formatFileSize","fileSize","toFixed","formatAssay","assay","assayHoverInfo","assays","dnase","h3k27ac","h3k4me3","ctcf","atac","ASSAY_COLORS"],"mappings":"AAOO,MAAMA,IAAgB,OAAOC,GAAaC,MAA+C;AAC9F,MAAI;AACF,UAAMC,IAAW,MAAMC,MAAMH,GAAK;AAAA,MAAEI,QAAQ;AAAA,IAAA,CAAQ;AACpD,QAAI,CAACF,EAASG;AACZ,YAAM,IAAIC,MAAM,kCAAkCN,CAAG;AAEvD,UAAMO,IAAgBL,EAASM,QAAQC,IAAI,gBAAgB;AAC3D,IAAIF,KACFN,EAAeS,SAASH,GAAe,EAAE,CAAC;AAAA,EAE9C,SAASI,GAAO;AACdC,YAAQD,MAAMA,CAAK,GACnBV,EAAe,EAAE;AAAA,EACnB;AACF,GAEaY,IAAiBA,CAACC,MAAqBA,MAAa,KAAK,kBAAkBA,IAAW,KAASC,QAAQ,CAAC,IAAI,OAM5GC,IAAcA,CAACC,MAAqB;AAC/C,UAAQA,GAAAA;AAAAA,IACN,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,IACT,KAAK;AACH,aAAO;AAAA,EAAA;AAEb;AASO,SAASC,EAAeC,GAA0C;AACvE,QAAM;AAAA,IAAEC,OAAAA;AAAAA,IAAOC,SAAAA;AAAAA,IAASC,SAAAA;AAAAA,IAASC,MAAAA;AAAAA,IAAMC,MAAAA;AAAAA,EAAAA,IAASL;AAEhD,SAAIC,KAASC,KAAWC,KAAWC,KAAQC,IAClC,yBACE,CAACJ,KAAS,CAACC,KAAW,CAACC,KAAW,CAACC,KAAQ,CAACC,IAC9C,wBAEA;AAAA,EAAeJ,IAAQ;AAAA,IAAY,EAAE,GAAGC,IAAU;AAAA,IAAc,EAAE,GAAGC,IAAU;AAAA,IAAc,EAAE,GAAGC,IAAO;AAAA,IAAW,EAAE,GAC3HC,IAAO;AAAA,IAAW,EAAE;AAE1B;AAEO,MAAMC,IAA0C;AAAA,EACrDL,OAAO;AAAA,EACPC,SAAS;AAAA,EACTC,SAAS;AAAA,EACTC,MAAM;AAAA,EACNC,MAAM;AACR;"}

package/dist/ui-components.es57.js

@@ -1,26 +1,165 @@
-import { c as p } from "./ui-components.es16.js";
-import { useRef as b, useEffect as v } from "react";
-import z from "./ui-components.es88.js";
-const E = (t, r, h) => {
-  const e = p.c(5), o = 200, u = b(0);
-  let s, n;
-  e[0] !== r || e[1] !== t || e[2] !== o ? (s = () => {
-    const c = t.current;
-    if (!c)
+import { j as l } from "./ui-components.es15.js";
+import { c as de } from "./ui-components.es16.js";
+import { Box as fe, Divider as me, Typography as ge, IconButton as pe, Tooltip as he, DialogTitle as ue, Checkbox as X, FormControlLabel as Y, DialogContent as xe, Stack as be, Button as Z, DialogActions as je, Dialog as Ce } from "@mui/material";
+import { useState as S } from "react";
+import { Download as _e } from "@mui/icons-material";
+import { ontologyDownloadMap as we } from "./ui-components.es87.js";
+import { formatFileSize as ee, fetchFileSize as le } from "./ui-components.es56.js";
+import { useDownloadContext as De } from "./ui-components.es55.js";
+const ke = (n) => {
+  const e = n.toLowerCase().replace(/\s+/g, "_");
+  return we[e] ?? [];
+}, Oe = (n) => {
+  const e = de.c(66), {
+    ontology: o
+  } = n, [I, F] = S(!1), [c, te] = S(!1), [r, oe] = S(!1), [D, ne] = S(null), [k, ie] = S(null), {
+    onDownload: A
+  } = De();
+  let t, i, E;
+  e[0] !== o ? (t = ke(o), i = t.find(ye)?.filename ?? void 0, E = t.find(Se)?.filename ?? void 0, e[0] = o, e[1] = t, e[2] = i, e[3] = E) : (t = e[1], i = e[2], E = e[3]);
+  const a = E;
+  let v;
+  e[4] !== a || e[5] !== k || e[6] !== i || e[7] !== D ? (v = () => {
+    i && !D && le(`https://downloads.wenglab.org/${i}`, ne), a && !k && le(`https://downloads.wenglab.org/${a}`, ie), F(!0);
+  }, e[4] = a, e[5] = k, e[6] = i, e[7] = D, e[8] = v) : v = e[8];
+  const U = v;
+  let $;
+  e[9] !== r || e[10] !== a || e[11] !== t || e[12] !== i || e[13] !== c || e[14] !== A || e[15] !== o ? ($ = () => {
+    if (!t || t.length === 0)
       return;
-    const f = z(() => {
-      const i = c.offsetWidth;
-      i !== u.current && (u.current = i, r());
-    }, o), d = new ResizeObserver((i) => {
-      for (const m of i)
-        m.borderBoxSize && f();
+    const s = [];
+    c && i && s.push({
+      filename: i,
+      label: "excluding_cancer_cell_lines"
+    }), r && a && s.push({
+      filename: a,
+      label: "all_biosamples"
+    }), s.forEach((se, ae) => {
+      const {
+        filename: V,
+        label: ce
+      } = se, W = `https://downloads.wenglab.org/${V}`;
+      setTimeout(() => {
+        if (A) {
+          const re = `${o}_aggregate_ccres_${ce}`;
+          A(W, re);
+        }
+        const y = document.createElement("a");
+        y.href = W, y.download = V, document.body.appendChild(y), y.click(), document.body.removeChild(y);
+      }, ae * 500);
     });
-    return d.observe(c), () => {
-      f.clear(), d.disconnect();
-    };
-  }, n = [t, r, o], e[0] = r, e[1] = t, e[2] = o, e[3] = s, e[4] = n) : (s = e[3], n = e[4]), v(s, n);
+  }, e[9] = r, e[10] = a, e[11] = t, e[12] = i, e[13] = c, e[14] = A, e[15] = o, e[16] = $) : $ = e[16];
+  const M = $;
+  let d;
+  e[17] !== t || e[18] !== o ? (d = t.length === 0 ? "No Aggregate cCRE Download Options" : /* @__PURE__ */ l.jsxs(fe, { children: [
+    "Download cCREs in ",
+    o.charAt(0).toUpperCase() + o.slice(1),
+    ":",
+    /* @__PURE__ */ l.jsx("ul", { style: {
+      margin: 0,
+      paddingLeft: 16
+    }, children: t.map(Fe) }),
+    "(Opens Download Dialog)"
+  ] }), e[17] = t, e[18] = o, e[19] = d) : d = e[19];
+  let f;
+  e[20] !== U ? (f = (s) => {
+    s.stopPropagation(), U();
+  }, e[20] = U, e[21] = f) : f = e[21];
+  const q = t.length === 0;
+  let R;
+  e[22] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (R = /* @__PURE__ */ l.jsx(_e, {}), e[22] = R) : R = e[22];
+  let m;
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+  let g;
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+  let T;
+  e[29] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (T = (s) => {
+    s.stopPropagation(), F(!1);
+  }, e[29] = T) : T = e[29];
+  let z;
+  e[30] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (z = {
+    backdrop: {
+      sx: {
+        backgroundColor: "rgba(255, 255, 255, 0.1)",
+        backdropFilter: "blur(2px)"
+      }
+    }
+  }, e[30] = z) : z = e[30];
+  let B;
+  e[31] !== o ? (B = o.charAt(0).toUpperCase(), e[31] = o, e[32] = B) : B = e[32];
+  const G = B + o.slice(1);
+  let p;
+  e[33] !== G ? (p = /* @__PURE__ */ l.jsxs(ue, { id: "export-dialog-title", children: [
+    "Download cCREs in ",
+    G,
+    ":"
+  ] }), e[33] = G, e[34] = p) : p = e[34];
+  let L;
+  e[35] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (L = (s) => oe(s.target.checked), e[35] = L) : L = e[35];
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+  const J = `Aggregate cCREs (all biosamples)${k ? " - " + ee(k) : ""}`;
+  let u;
+  e[39] !== h || e[40] !== J ? (u = /* @__PURE__ */ l.jsx(Y, { control: h, label: J }), e[39] = h, e[40] = J, e[41] = u) : u = e[41];
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+  e[42] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (O = (s) => te(s.target.checked), e[42] = O) : O = e[42];
+  const K = !i;
+  let x;
+  e[43] !== c || e[44] !== K ? (x = /* @__PURE__ */ l.jsx(X, { checked: c, onChange: O, disabled: K }), e[43] = c, e[44] = K, e[45] = x) : x = e[45];
+  const Q = `Aggregate cCREs (excluding cancer cell lines)${D ? " - " + ee(D) : ""}`;
+  let b;
+  e[46] !== x || e[47] !== Q ? (b = /* @__PURE__ */ l.jsx(Y, { control: x, label: Q }), e[46] = x, e[47] = Q, e[48] = b) : b = e[48];
+  let j;
+  e[49] !== t.length ? (j = t.length <= 1 && /* @__PURE__ */ l.jsxs(l.Fragment, { children: [
+    /* @__PURE__ */ l.jsx(me, { sx: {
+      marginTop: 1
+    } }),
+    /* @__PURE__ */ l.jsx(ge, { marginTop: 1, children: /* @__PURE__ */ l.jsx("strong", { children: "No cancerous cell lines available in this tissue" }) })
+  ] }), e[49] = t.length, e[50] = j) : j = e[50];
+  let C;
+  e[51] !== u || e[52] !== b || e[53] !== j ? (C = /* @__PURE__ */ l.jsx(xe, { children: /* @__PURE__ */ l.jsxs(be, { children: [
+    u,
+    b,
+    j
+  ] }) }), e[51] = u, e[52] = b, e[53] = j, e[54] = C) : C = e[54];
+  let N;
+  e[55] === /* @__PURE__ */ Symbol.for("react.memo_cache_sentinel") ? (N = /* @__PURE__ */ l.jsx(Z, { onClick: () => {
+    F(!1);
+  }, children: "Cancel" }), e[55] = N) : N = e[55];
+  let _;
+  e[56] !== M ? (_ = /* @__PURE__ */ l.jsxs(je, { children: [
+    N,
+    /* @__PURE__ */ l.jsx(Z, { variant: "contained", onClick: () => {
+      M(), F(!1);
+    }, children: "Download" })
+  ] }), e[56] = M, e[57] = _) : _ = e[57];
+  let w;
+  e[58] !== I || e[59] !== p || e[60] !== C || e[61] !== _ ? (w = /* @__PURE__ */ l.jsxs(Ce, { open: I, onClose: T, "aria-labelledby": "export-dialog-title", disableScrollLock: !0, slotProps: z, onClick: Ae, children: [
+    p,
+    C,
+    _
+  ] }), e[58] = I, e[59] = p, e[60] = C, e[61] = _, e[62] = w) : w = e[62];
+  let P;
+  return e[63] !== w || e[64] !== g ? (P = /* @__PURE__ */ l.jsxs(l.Fragment, { children: [
+    g,
+    w
+  ] }), e[63] = w, e[64] = g, e[65] = P) : P = e[65], P;
 };
+function ye(n) {
+  return n.label === "Excluding Cancer Cell Lines";
+}
+function Se(n) {
+  return n.label === "All Biosamples";
+}
+function Fe(n) {
+  return /* @__PURE__ */ l.jsx("li", { children: n.label }, n.filename);
+}
+function Ae(n) {
+  return n.stopPropagation();
+}
 export {
-  E as useContainerResize
+  Oe as AggregateDownloadButton,
+  ke as getAvailableFiles
 };
 //# sourceMappingURL=ui-components.es57.js.map

package/dist/ui-components.es57.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ui-components.es57.js","sources":["../src/components/BiosampleTable/AggregateDownload.tsx"],"sourcesContent":["import {\n  Button,\n  Tooltip,\n  Box,\n  Checkbox,\n  Dialog,\n  DialogActions,\n  DialogContent,\n  DialogTitle,\n  FormControlLabel,\n  Stack,\n  Typography,\n  Divider,\n  IconButton,\n} from \"@mui/material\";\nimport { useCallback, useMemo, useState } from \"react\";\nimport { Download } from \"@mui/icons-material\";\nimport { ontologyDownloadMap } from \"./ontologyDownloads\";\nimport { fetchFileSize, formatFileSize } from \"./helpers\";\nimport { useDownloadContext } from \"./DownloadContext\";\n\nexport type AggregateDownloadProps = {\n  ontology: string;\n};\n\n/**\n *\n * @param ontology\n * Finds available aggregate file urls for the given ontology in the form `[noccl, ccl]`\n */\n\nexport const getAvailableFiles = (ontology: string) => {\n  const key = ontology.toLowerCase().replace(/\\s+/g, \"_\");\n  return ontologyDownloadMap[key] ?? 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