@weng-lab/ui-components 2.0.3 → 2.1.1

package/dist/ui-components.es52.js

@@ -1,9 +1,146 @@
-import { createContext as o, useContext as t } from "react";
-const n = o({
-  onDownload: void 0
-}), r = () => t(n);
+import c from "./ui-components.es146.js";
+import b from "./ui-components.es228.js";
+function l(e, t = 0, n = 1) {
+  return process.env.NODE_ENV !== "production" && (e < t || e > n) && console.error(`MUI: The value provided ${e} is out of range [${t}, ${n}].`), b(e, t, n);
+}
+function v(e) {
+  e = e.slice(1);
+  const t = new RegExp(`.{1,${e.length >= 6 ? 2 : 1}}`, "g");
+  let n = e.match(t);
+  return n && n[0].length === 1 && (n = n.map((r) => r + r)), process.env.NODE_ENV !== "production" && e.length !== e.trim().length && console.error(`MUI: The color: "${e}" is invalid. Make sure the color input doesn't contain leading/trailing space.`), n ? `rgb${n.length === 4 ? "a" : ""}(${n.map((r, s) => s < 3 ? parseInt(r, 16) : Math.round(parseInt(r, 16) / 255 * 1e3) / 1e3).join(", ")})` : "";
+}
+function a(e) {
+  if (e.type)
+    return e;
+  if (e.charAt(0) === "#")
+    return a(v(e));
+  const t = e.indexOf("("), n = e.substring(0, t);
+  if (!["rgb", "rgba", "hsl", "hsla", "color"].includes(n))
+    throw new Error(process.env.NODE_ENV !== "production" ? `MUI: Unsupported \`${e}\` color.
+The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().` : c(9, e));
+  let r = e.substring(t + 1, e.length - 1), s;
+  if (n === "color") {
+    if (r = r.split(" "), s = r.shift(), r.length === 4 && r[3].charAt(0) === "/" && (r[3] = r[3].slice(1)), !["srgb", "display-p3", "a98-rgb", "prophoto-rgb", "rec-2020"].includes(s))
+      throw new Error(process.env.NODE_ENV !== "production" ? `MUI: unsupported \`${s}\` color space.
+The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.` : c(10, s));
+  } else
+    r = r.split(",");
+  return r = r.map((u) => parseFloat(u)), {
+    type: n,
+    values: r,
+    colorSpace: s
+  };
+}
+const E = (e) => {
+  const t = a(e);
+  return t.values.slice(0, 3).map((n, r) => t.type.includes("hsl") && r !== 0 ? `${n}%` : n).join(" ");
+}, O = (e, t) => {
+  try {
+    return E(e);
+  } catch {
+    return t && process.env.NODE_ENV !== "production" && console.warn(t), e;
+  }
+};
+function p(e) {
+  const {
+    type: t,
+    colorSpace: n
+  } = e;
+  let {
+    values: r
+  } = e;
+  return t.includes("rgb") ? r = r.map((s, u) => u < 3 ? parseInt(s, 10) : s) : t.includes("hsl") && (r[1] = `${r[1]}%`, r[2] = `${r[2]}%`), t.includes("color") ? r = `${n} ${r.join(" ")}` : r = `${r.join(", ")}`, `${t}(${r})`;
+}
+function $(e) {
+  e = a(e);
+  const {
+    values: t
+  } = e, n = t[0], r = t[1] / 100, s = t[2] / 100, u = r * Math.min(s, 1 - s), i = (y, d = (y + n / 30) % 12) => s - u * Math.max(Math.min(d - 3, 9 - d, 1), -1);
+  let o = "rgb";
+  const f = [Math.round(i(0) * 255), Math.round(i(8) * 255), Math.round(i(4) * 255)];
+  return e.type === "hsla" && (o += "a", f.push(t[3])), p({
+    type: o,
+    values: f
+  });
+}
+function h(e) {
+  e = a(e);
+  let t = e.type === "hsl" || e.type === "hsla" ? a($(e)).values : e.values;
+  return t = t.map((n) => (e.type !== "color" && (n /= 255), n <= 0.03928 ? n / 12.92 : ((n + 0.055) / 1.055) ** 2.4)), Number((0.2126 * t[0] + 0.7152 * t[1] + 0.0722 * t[2]).toFixed(3));
+}
+function w(e, t) {
+  const n = h(e), r = h(t);
+  return (Math.max(n, r) + 0.05) / (Math.min(n, r) + 0.05);
+}
+function N(e, t) {
+  return e = a(e), t = l(t), (e.type === "rgb" || e.type === "hsl") && (e.type += "a"), e.type === "color" ? e.values[3] = `/${t}` : e.values[3] = t, p(e);
+}
+function V(e, t, n) {
+  try {
+    return N(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
+  }
+}
+function g(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] *= 1 - t;
+  else if (e.type.includes("rgb") || e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] *= 1 - t;
+  return p(e);
+}
+function C(e, t, n) {
+  try {
+    return g(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
+  }
+}
+function m(e, t) {
+  if (e = a(e), t = l(t), e.type.includes("hsl"))
+    e.values[2] += (100 - e.values[2]) * t;
+  else if (e.type.includes("rgb"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (255 - e.values[n]) * t;
+  else if (e.type.includes("color"))
+    for (let n = 0; n < 3; n += 1)
+      e.values[n] += (1 - e.values[n]) * t;
+  return p(e);
+}
+function I(e, t, n) {
+  try {
+    return m(e, t);
+  } catch {
+    return n && process.env.NODE_ENV !== "production" && console.warn(n), e;
+  }
+}
+function M(e, t = 0.15) {
+  return h(e) > 0.5 ? g(e, t) : m(e, t);
+}
+function T(e, t, n) {
+  try {
+    return M(e, t);
+  } catch {
+    return e;
+  }
+}
 export {
-  n as DownloadContext,
-  r as useDownloadContext
+  N as alpha,
+  E as colorChannel,
+  g as darken,
+  a as decomposeColor,
+  M as emphasize,
+  w as getContrastRatio,
+  h as getLuminance,
+  v as hexToRgb,
+  $ as hslToRgb,
+  m as lighten,
+  V as private_safeAlpha,
+  O as private_safeColorChannel,
+  C as private_safeDarken,
+  T as private_safeEmphasize,
+  I as private_safeLighten,
+  p as recomposeColor
 };
 //# sourceMappingURL=ui-components.es52.js.map

package/dist/ui-components.es52.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es52.js","sources":["../src/components/BiosampleTable/DownloadContext.tsx"],"sourcesContent":["import { createContext, useContext } from \"react\";\n\nexport type DownloadContextType = {\n  onDownload?: (url: string, name: string) => void;\n};\n\nexport const DownloadContext = createContext<DownloadContextType>({\n  onDownload: undefined,\n});\n\nexport const useDownloadContext = () => useContext(DownloadContext);\n"],"names":["DownloadContext","createContext","onDownload","undefined","useDownloadContext","useContext"],"mappings":";AAMO,MAAMA,IAAkBC,EAAmC;AAAA,EAChEC,YAAYC;AACd,CAAC,GAEYC,IAAqBA,MAAMC,EAAWL,CAAe;"}
+{"version":3,"file":"ui-components.es52.js","sources":["../../../node_modules/.pnpm/@mui+system@7.3.9_@emotion+react@11.14.0_@types+react@19.2.14_react@19.2.4__@emotion+st_100059df2673d7a323eb0d2da91385ea/node_modules/@mui/system/esm/colorManipulator/colorManipulator.js"],"sourcesContent":["import _formatErrorMessage from \"@mui/utils/formatMuiErrorMessage\";\n/* eslint-disable @typescript-eslint/naming-convention */\nimport clamp from '@mui/utils/clamp';\n\n/**\n * Returns a number whose value is limited to the given range.\n * @param {number} value The value to be clamped\n * @param {number} min The lower boundary of the output range\n * @param {number} max The upper boundary of the output range\n * @returns {number} A number in the range [min, max]\n */\nfunction clampWrapper(value, min = 0, max = 1) {\n  if (process.env.NODE_ENV !== 'production') {\n    if (value < min || value > max) {\n      console.error(`MUI: The value provided ${value} is out of range [${min}, ${max}].`);\n    }\n  }\n  return clamp(value, min, max);\n}\n\n/**\n * Converts a color from CSS hex format to CSS rgb format.\n * @param {string} color - Hex color, i.e. #nnn or #nnnnnn\n * @returns {string} A CSS rgb color string\n */\nexport function hexToRgb(color) {\n  color = color.slice(1);\n  const re = new RegExp(`.{1,${color.length >= 6 ? 2 : 1}}`, 'g');\n  let colors = color.match(re);\n  if (colors && colors[0].length === 1) {\n    colors = colors.map(n => n + n);\n  }\n  if (process.env.NODE_ENV !== 'production') {\n    if (color.length !== color.trim().length) {\n      console.error(`MUI: The color: \"${color}\" is invalid. Make sure the color input doesn't contain leading/trailing space.`);\n    }\n  }\n  return colors ? `rgb${colors.length === 4 ? 'a' : ''}(${colors.map((n, index) => {\n    return index < 3 ? parseInt(n, 16) : Math.round(parseInt(n, 16) / 255 * 1000) / 1000;\n  }).join(', ')})` : '';\n}\nfunction intToHex(int) {\n  const hex = int.toString(16);\n  return hex.length === 1 ? `0${hex}` : hex;\n}\n\n/**\n * Returns an object with the type and values of a color.\n *\n * Note: Does not support rgb % values.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {object} - A MUI color object: {type: string, values: number[]}\n */\nexport function decomposeColor(color) {\n  // Idempotent\n  if (color.type) {\n    return color;\n  }\n  if (color.charAt(0) === '#') {\n    return decomposeColor(hexToRgb(color));\n  }\n  const marker = color.indexOf('(');\n  const type = color.substring(0, marker);\n  if (!['rgb', 'rgba', 'hsl', 'hsla', 'color'].includes(type)) {\n    throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: Unsupported \\`${color}\\` color.\\n` + 'The following formats are supported: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color().' : _formatErrorMessage(9, color));\n  }\n  let values = color.substring(marker + 1, color.length - 1);\n  let colorSpace;\n  if (type === 'color') {\n    values = values.split(' ');\n    colorSpace = values.shift();\n    if (values.length === 4 && values[3].charAt(0) === '/') {\n      values[3] = values[3].slice(1);\n    }\n    if (!['srgb', 'display-p3', 'a98-rgb', 'prophoto-rgb', 'rec-2020'].includes(colorSpace)) {\n      throw new Error(process.env.NODE_ENV !== \"production\" ? `MUI: unsupported \\`${colorSpace}\\` color space.\\n` + 'The following color spaces are supported: srgb, display-p3, a98-rgb, prophoto-rgb, rec-2020.' : _formatErrorMessage(10, colorSpace));\n    }\n  } else {\n    values = values.split(',');\n  }\n  values = values.map(value => parseFloat(value));\n  return {\n    type,\n    values,\n    colorSpace\n  };\n}\n\n/**\n * Returns a channel created from the input color.\n *\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {string} - The channel for the color, that can be used in rgba or hsla colors\n */\nexport const colorChannel = color => {\n  const decomposedColor = decomposeColor(color);\n  return decomposedColor.values.slice(0, 3).map((val, idx) => decomposedColor.type.includes('hsl') && idx !== 0 ? `${val}%` : val).join(' ');\n};\nexport const private_safeColorChannel = (color, warning) => {\n  try {\n    return colorChannel(color);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n};\n\n/**\n * Converts a color object with type and values to a string.\n * @param {object} color - Decomposed color\n * @param {string} color.type - One of: 'rgb', 'rgba', 'hsl', 'hsla', 'color'\n * @param {array} color.values - [n,n,n] or [n,n,n,n]\n * @returns {string} A CSS color string\n */\nexport function recomposeColor(color) {\n  const {\n    type,\n    colorSpace\n  } = color;\n  let {\n    values\n  } = color;\n  if (type.includes('rgb')) {\n    // Only convert the first 3 values to int (i.e. not alpha)\n    values = values.map((n, i) => i < 3 ? parseInt(n, 10) : n);\n  } else if (type.includes('hsl')) {\n    values[1] = `${values[1]}%`;\n    values[2] = `${values[2]}%`;\n  }\n  if (type.includes('color')) {\n    values = `${colorSpace} ${values.join(' ')}`;\n  } else {\n    values = `${values.join(', ')}`;\n  }\n  return `${type}(${values})`;\n}\n\n/**\n * Converts a color from CSS rgb format to CSS hex format.\n * @param {string} color - RGB color, i.e. rgb(n, n, n)\n * @returns {string} A CSS rgb color string, i.e. #nnnnnn\n */\nexport function rgbToHex(color) {\n  // Idempotent\n  if (color.startsWith('#')) {\n    return color;\n  }\n  const {\n    values\n  } = decomposeColor(color);\n  return `#${values.map((n, i) => intToHex(i === 3 ? Math.round(255 * n) : n)).join('')}`;\n}\n\n/**\n * Converts a color from hsl format to rgb format.\n * @param {string} color - HSL color values\n * @returns {string} rgb color values\n */\nexport function hslToRgb(color) {\n  color = decomposeColor(color);\n  const {\n    values\n  } = color;\n  const h = values[0];\n  const s = values[1] / 100;\n  const l = values[2] / 100;\n  const a = s * Math.min(l, 1 - l);\n  const f = (n, k = (n + h / 30) % 12) => l - a * Math.max(Math.min(k - 3, 9 - k, 1), -1);\n  let type = 'rgb';\n  const rgb = [Math.round(f(0) * 255), Math.round(f(8) * 255), Math.round(f(4) * 255)];\n  if (color.type === 'hsla') {\n    type += 'a';\n    rgb.push(values[3]);\n  }\n  return recomposeColor({\n    type,\n    values: rgb\n  });\n}\n/**\n * The relative brightness of any point in a color space,\n * normalized to 0 for darkest black and 1 for lightest white.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @returns {number} The relative brightness of the color in the range 0 - 1\n */\nexport function getLuminance(color) {\n  color = decomposeColor(color);\n  let rgb = color.type === 'hsl' || color.type === 'hsla' ? decomposeColor(hslToRgb(color)).values : color.values;\n  rgb = rgb.map(val => {\n    if (color.type !== 'color') {\n      val /= 255; // normalized\n    }\n    return val <= 0.03928 ? val / 12.92 : ((val + 0.055) / 1.055) ** 2.4;\n  });\n\n  // Truncate at 3 digits\n  return Number((0.2126 * rgb[0] + 0.7152 * rgb[1] + 0.0722 * rgb[2]).toFixed(3));\n}\n\n/**\n * Calculates the contrast ratio between two colors.\n *\n * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests\n * @param {string} foreground - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @param {string} background - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla()\n * @returns {number} A contrast ratio value in the range 0 - 21.\n */\nexport function getContrastRatio(foreground, background) {\n  const lumA = getLuminance(foreground);\n  const lumB = getLuminance(background);\n  return (Math.max(lumA, lumB) + 0.05) / (Math.min(lumA, lumB) + 0.05);\n}\n\n/**\n * Sets the absolute transparency of a color.\n * Any existing alpha values are overwritten.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} value - value to set the alpha channel to in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function alpha(color, value) {\n  color = decomposeColor(color);\n  value = clampWrapper(value);\n  if (color.type === 'rgb' || color.type === 'hsl') {\n    color.type += 'a';\n  }\n  if (color.type === 'color') {\n    color.values[3] = `/${value}`;\n  } else {\n    color.values[3] = value;\n  }\n  return recomposeColor(color);\n}\nexport function private_safeAlpha(color, value, warning) {\n  try {\n    return alpha(color, value);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darkens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function darken(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] *= 1 - coefficient;\n  } else if (color.type.includes('rgb') || color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] *= 1 - coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeDarken(color, coefficient, warning) {\n  try {\n    return darken(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Lightens a color.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function lighten(color, coefficient) {\n  color = decomposeColor(color);\n  coefficient = clampWrapper(coefficient);\n  if (color.type.includes('hsl')) {\n    color.values[2] += (100 - color.values[2]) * coefficient;\n  } else if (color.type.includes('rgb')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (255 - color.values[i]) * coefficient;\n    }\n  } else if (color.type.includes('color')) {\n    for (let i = 0; i < 3; i += 1) {\n      color.values[i] += (1 - color.values[i]) * coefficient;\n    }\n  }\n  return recomposeColor(color);\n}\nexport function private_safeLighten(color, coefficient, warning) {\n  try {\n    return lighten(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Darken or lighten a color, depending on its luminance.\n * Light colors are darkened, dark colors are lightened.\n * @param {string} color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(), hsl(), hsla(), color()\n * @param {number} coefficient=0.15 - multiplier in the range 0 - 1\n * @returns {string} A CSS color string. Hex input values are returned as rgb\n */\nexport function emphasize(color, coefficient = 0.15) {\n  return getLuminance(color) > 0.5 ? darken(color, coefficient) : lighten(color, coefficient);\n}\nexport function private_safeEmphasize(color, coefficient, warning) {\n  try {\n    return emphasize(color, coefficient);\n  } catch (error) {\n    if (warning && process.env.NODE_ENV !== 'production') {\n      console.warn(warning);\n    }\n    return color;\n  }\n}\n\n/**\n * Blend a transparent overlay color with a background color, resulting in a single\n * RGB color.\n * @param {string} background - CSS color\n * @param {string} overlay - CSS color\n * @param {number} opacity - Opacity multiplier in the range 0 - 1\n * @param {number} [gamma=1.0] - Gamma correction factor. For gamma-correct blending, 2.2 is usual.\n */\nexport function blend(background, overlay, opacity, gamma = 1.0) {\n  const blendChannel = (b, o) => Math.round((b ** (1 / gamma) * (1 - opacity) + o ** (1 / gamma) * opacity) ** gamma);\n  const backgroundColor = decomposeColor(background);\n  const overlayColor = decomposeColor(overlay);\n  const rgb = [blendChannel(backgroundColor.values[0], overlayColor.values[0]), blendChannel(backgroundColor.values[1], overlayColor.values[1]), blendChannel(backgroundColor.values[2], overlayColor.values[2])];\n  return recomposeColor({\n    type: 'rgb',\n    values: rgb\n  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package/dist/ui-components.es53.js

@@ -1,57 +1,215 @@
-const s = async (e, n) => {
-  try {
-    const a = await fetch(e, {
-      method: "HEAD"
-    });
-    if (!a.ok)
-      throw new Error("Error fetching file size for " + e);
-    const t = a.headers.get("Content-Length");
-    t && n(parseInt(t, 10));
-  } catch (a) {
-    console.error(a), n(-1);
-  }
-}, o = (e) => e === -1 ? "Unknown Size" : (e / 1e6).toFixed(1) + " MB", i = (e) => {
-  switch (e) {
-    case "atac":
-      return "ATAC";
-    case "ctcf":
-      return "CTCF";
-    case "dnase":
-      return "DNase";
-    case "h3k27ac":
-      return "H3K27ac";
-    case "h3k4me3":
-      return "H3K4me3";
+function p(t, i) {
+  const e = [];
+  t = t.replace(/,/g, "");
+  let c, o, r;
+  if (t.includes(":") && t.includes("-"))
+    c = t.split(":")[0], o = parseInt(t.split(":")[1].split("-")[0]) || 0, r = parseInt(t.split(":")[1].split("-")[1]) || o + 1e3;
+  else if (t.includes("	")) {
+    const [h, l, d] = t.split("	");
+    c = h, o = parseInt(l), r = parseInt(d);
+  } else
+    return e;
+  const s = c.replace(/chrx$/, "chrX").replace(/chry$/, "chrY"), a = m[i][c];
+  return r > o && a && r <= a && e.push({
+    title: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    domain: {
+      chromosome: s,
+      start: o,
+      end: r
+    },
+    description: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    type: "Coordinate"
+  }), e;
+}
+function n(t, i, e) {
+  return t ? t.slice(0, i).map((c) => ({
+    title: e.getTitle(c),
+    description: e.getDescription(c),
+    domain: {
+      chromosome: c.coordinates.chromosome,
+      start: c.coordinates.start,
+      end: c.coordinates.end
+    },
+    type: e.type
+  })) : [];
+}
+function g(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.id,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "SNP"
+  });
+}
+function $(t, i, e) {
+  return n(t, i, {
+    getTitle: (c) => c.name,
+    getDescription: (c) => {
+      let o = "";
+      return c.versions.forEach((r, s) => o += "V" + r.version + " " + r.id + (s === c.versions.length - 1 ? "" : `
+`)), `${c.description}
+${o}
+${c.coordinates.chromosome}:${c.coordinates.start}-${c.coordinates.end}`;
+    },
+    type: "Gene"
+  });
+}
+function u(t, i) {
+  return t.slice(0, i).map((e) => ({
+    title: e.disease_trait,
+    description: `${e.author.replace("_", " ")} (${e.studyid.split("-")[1]})
+${e.parent_terms.join(",")}
+ ${e.has_enrichment_info ? "Biosample Enrichment" : ""}`,
+    domain: void 0,
+    id: e.studyid,
+    type: "Study"
+  }));
+}
+function y(t) {
+  return t.map((i) => ({
+    title: i.label,
+    description: i.description ?? "",
+    domain: void 0,
+    id: i.value,
+    type: "Ome"
+  }));
+}
+function v(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "iCRE"
+  });
+}
+function f(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}${e.isiCRE ? ", iCRE" : ""}`,
+    type: "cCRE"
+  });
+}
+function R(t, i) {
+  return t.filter((e) => e.input !== e.v4_match_or_intersecting).slice(0, i).map((e) => {
+    const c = e.input_region, o = e.v4_match_or_intersecting;
+    return {
+      title: e.input,
+      // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon
+      description: `(Registry ${e.input_latest_previous_version})
+${e.input_region}
+${o ? `Intersects v4 cCRE${o.includes(",") ? "s" : ""}: ${o.replace(",", ", ")}` : "No intersecting v4 cCREs"}`,
+      domain: {
+        chromosome: c.split(":")[0],
+        start: parseInt(c.split(":")[1].split("-")[0]),
+        end: parseInt(c.split(":")[1].split("-")[1])
+      },
+      type: "Legacy cCRE"
+    };
+  });
+}
+const b = [{
+  label: "Proteomics",
+  value: "proteomics",
+  keywords: ["protein", "mass spec"]
+}, {
+  label: "WGS",
+  value: "WGS",
+  keywords: ["whole genome sequencing", "genome sequencing", "genomics"],
+  description: "Whole Genome Sequencing"
+}, {
+  label: "WGBS",
+  value: "WGBS",
+  keywords: ["whole genome bisulfite sequencing", "epigenomics", "methylation"],
+  description: "Whole Genome Bisulfite Sequencing"
+}, {
+  label: "ATAC",
+  value: "ATAC",
+  keywords: ["chromatin accessibility", "atac-seq"],
+  description: "ATAC-seq"
+}, {
+  label: "RNA",
+  value: "RNA",
+  keywords: ["rna-seq", "transcriptomics", "gene expression"],
+  description: "RNA-seq"
+}, {
+  label: "Metabolomics",
+  value: "metabolomics"
+}, {
+  label: "Lipidomics",
+  value: "lipidomics"
+}, {
+  label: "Metallomics",
+  value: "metallomics"
+}, {
+  label: "Exposomics",
+  value: "exposomics"
+}], m = {
+  GRCh38: {
+    chr1: 248956422,
+    chr2: 242193529,
+    chr3: 198295559,
+    chr4: 190214555,
+    chr5: 181538259,
+    chr6: 170805979,
+    chr7: 159345973,
+    chr8: 145138636,
+    chr9: 138394717,
+    chr10: 133797422,
+    chr11: 135086622,
+    chr12: 133275309,
+    chr13: 114364328,
+    chr14: 107043718,
+    chr15: 101991189,
+    chr16: 90338345,
+    chr17: 83257441,
+    chr18: 80373285,
+    chr19: 58617616,
+    chr20: 64444167,
+    chr21: 46709983,
+    chr22: 50818468,
+    chrX: 156040895,
+    chrx: 156040895,
+    chrY: 57227415,
+    chry: 57227415
+  },
+  mm10: {
+    chr1: 195471971,
+    chr2: 182113224,
+    chr3: 160039680,
+    chr4: 156508116,
+    chr5: 151834684,
+    chr6: 149736546,
+    chr7: 145441459,
+    chr8: 129401213,
+    chr9: 124595110,
+    chr10: 130694993,
+    chr11: 122082543,
+    chr12: 120129022,
+    chr13: 120421639,
+    chr14: 124902244,
+    chr15: 104043685,
+    chr16: 98207768,
+    chr17: 94987271,
+    chr18: 90702639,
+    chr19: 61431566,
+    chrX: 171031299,
+    chrx: 171031299,
+    chrY: 91744698,
+    chry: 91744698
   }
 };
-function f(e) {
-  const {
-    dnase: n,
-    h3k27ac: a,
-    h3k4me3: t,
-    ctcf: c,
-    atac: r
-  } = e;
-  return n && a && t && c && r ? "All assays available" : !n && !a && !t && !c && !r ? "No assays available" : `Available:
-${n ? `DNase
-` : ""}${a ? `H3K27ac
-` : ""}${t ? `H3K4me3
-` : ""}${c ? `CTCF
-` : ""}${r ? `ATAC
-` : ""}`;
-}
-const h = {
-  dnase: "#06DA93",
-  h3k27ac: "#FFCD00",
-  h3k4me3: "#FF0000",
-  ctcf: "#00B0F0",
-  atac: "#02c7b9"
-};
+function C(t) {
+  const i = t.includes("	"), e = t.includes("-"), c = t.length >= 4 && /^[0-9xyXY]$/.test(t[3]);
+  return (i || e) && t.startsWith("chr") && c;
+}
 export {
-  h as ASSAY_COLORS,
-  f as assayHoverInfo,
-  s as fetchFileSize,
-  i as formatAssay,
-  o as formatFileSize
+  b as OmesList,
+  f as ccreResultList,
+  $ as geneResultList,
+  p as getCoordinates,
+  v as icreResultList,
+  C as isDomain,
+  R as legacyCcreResultList,
+  y as omeResultsList,
+  g as snpResultList,
+  u as studyResultList
 };
 //# sourceMappingURL=ui-components.es53.js.map

package/dist/ui-components.es53.js.map

@@ -1 +1 @@
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\"\" : \"\\n\"))\n      );\n      return `${result.description}\\n${idStr}\\n${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`;\n    },\n    type: \"Gene\",\n  });\n}\n\nexport function studyResultList(results: StudyResponse[], limit: number): Result[] {\n  return results.slice(0, limit).map((result) => ({\n    title: result.disease_trait,\n    description: `${result.author.replace(\"_\", \" \")} (${result.studyid.split(\"-\")[1]})\\n${result.parent_terms.join(\",\")}\\n ${result.has_enrichment_info ? \"Biosample Enrichment\" : \"\"}`,\n    domain: undefined,\n    id: result.studyid,\n    type: \"Study\",\n  }));\n}\n\nexport function omeResultsList(results: OmeOption[]): Result[] {\n  return results.map((ome) => ({\n    title: ome.label,\n    description: ome.description ?? \"\",\n    domain: undefined,\n    id: ome.value,\n    type: \"Ome\",\n  }));\n}\n\nexport function icreResultList(results: ICREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"iCRE\",\n  });\n}\n\nexport function ccreResultList(results: CCREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${\n        result.coordinates.end\n      }${result.isiCRE ? \", iCRE\" : \"\"}`,\n    type: \"cCRE\",\n  });\n}\n\nexport function legacyCcreResultList(results: LegacyCcreResponse[], limit: number): Result[] {\n  return results\n    .filter((result) => result.input !== result.v4_match_or_intersecting) //filter v4 cCREs\n    .slice(0, limit)\n    .map((result) => {\n      const region = result.input_region;\n      const overlapping = result.v4_match_or_intersecting\n      return {\n        title: result.input,\n        // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon\n        description: `(Registry ${result.input_latest_previous_version})\\n${result.input_region}\\n${overlapping ? `Intersects v4 cCRE${overlapping.includes(\",\") ? \"s\" : \"\"}: ${overlapping.replace(\",\", \", \")}` : \"No intersecting v4 cCREs\"}`,\n        domain: {\n          chromosome: region.split(\":\")[0],\n          start: parseInt(region.split(\":\")[1].split(\"-\")[0]),\n          end: parseInt(region.split(\":\")[1].split(\"-\")[1]),\n        },\n        type: \"Legacy cCRE\",\n      };\n    });\n}\n\nexport interface OmeOption {\n  label: string;\n  value: string;\n  keywords?: string[];\n  description?: string;\n}\n//allows the user to search more freely and get the result they are looking for\n//will look at label as well as keywords\nexport const OmesList: OmeOption[] = [\n  {\n    label: \"Proteomics\",\n    value: \"proteomics\",\n    keywords: [\"protein\", \"mass spec\"],\n  },\n  {\n    label: \"WGS\",\n    value: \"WGS\",\n    keywords: [\"whole genome sequencing\", \"genome sequencing\", \"genomics\"],\n    description: \"Whole Genome Sequencing\"\n  },\n  {\n    label: \"WGBS\",\n    value: \"WGBS\",\n    keywords: [\"whole genome bisulfite sequencing\", \"epigenomics\", \"methylation\"],\n    description: \"Whole Genome Bisulfite Sequencing\"\n  },\n  {\n    label: \"ATAC\",\n    value: \"ATAC\",\n    keywords: [\"chromatin accessibility\", \"atac-seq\"],\n    description: \"ATAC-seq\"\n  },\n  {\n    label: \"RNA\",\n    value: \"RNA\",\n    keywords: [\"rna-seq\", \"transcriptomics\", \"gene expression\"],\n    description: \"RNA-seq\"\n  },\n  {\n    label: \"Metabolomics\",\n    value: \"metabolomics\",\n  },\n  {\n    label: \"Lipidomics\",\n    value: \"lipidomics\",\n  },\n  {\n    label: \"Metallomics\",\n    value: \"metallomics\",\n  },\n  {\n    label: \"Exposomics\",\n    value: \"exposomics\",\n  },\n];\n\n// Object to store chromosome lengths for GRCh38 and mm10\nconst 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