@weng-lab/ui-components 2.0.3 → 2.1.1

package/dist/src/components/GenomeSearch/GenomeSearch.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"GenomeSearch.d.ts","sourceRoot":"","sources":["../../../../src/components/GenomeSearch/GenomeSearch.tsx"],"names":[],"mappings":"AAMA,OAAO,EAAE,iBAAiB,EAAU,MAAM,SAAS,CAAC;AAiOpD;;;;GAIG;AACH,iBAAS,YAAY,CAAC,KAAK,EAAE,iBAAiB,2CAE7C;AAED,eAAe,YAAY,CAAC"}
+{"version":3,"file":"GenomeSearch.d.ts","sourceRoot":"","sources":["../../../../src/components/GenomeSearch/GenomeSearch.tsx"],"names":[],"mappings":"AAMA,OAAO,EAAE,iBAAiB,EAAU,MAAM,SAAS,CAAC;AA2PpD;;;;GAIG;AACH,iBAAS,YAAY,CAAC,KAAK,EAAE,iBAAiB,2CAE7C;AAED,eAAe,YAAY,CAAC"}

package/dist/src/components/GenomeSearch/types.d.ts

@@ -32,7 +32,7 @@ export type ResultType = "Gene" | "SNP" | "Coordinate" | "iCRE" | "cCRE" | "Stud
 export type Result = {
     title?: string;
     description?: string;
-    type?: ResultType;
+    type: ResultType;
     id?: string;
     name?: string;
     domain?: Domain;

package/dist/src/components/GenomeSearch/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../../src/components/GenomeSearch/types.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,QAAQ,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAGzF,MAAM,MAAM,iBAAiB,GAAG,OAAO,CAAC,iBAAiB,CAAC,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,CAAC,GAAG;IAC1G,QAAQ,EAAE,QAAQ,GAAG,MAAM,CAAC;IAC5B,cAAc,EAAE,CAAC,MAAM,EAAE,MAAM,KAAK,IAAI,CAAC;IACzC,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;IAC1B,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAAC;IAEhC,OAAO,EAAE,UAAU,EAAE,CAAC;IACtB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,UAAU,CAAC,EAAE,MAAM,CAAC;IAGpB,SAAS,CAAC,EAAE;QACV,KAAK,CAAC,EAAE,OAAO,CAAC,cAAc,CAAC,CAAC;QAChC,MAAM,CAAC,EAAE,OAAO,CAAC,WAAW,CAAC,CAAC;QAC9B,GAAG,CAAC,EAAE,OAAO,CAAC,QAAQ,CAAC,CAAC;KACzB,CAAC;IAGF,KAAK,CAAC,EAAE;QACN,KAAK,CAAC,EAAE,KAAK,CAAC,YAAY,CAAC,cAAc,CAAC,CAAC;QAC3C,MAAM,CAAC,EAAE,KAAK,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC;QACzC,GAAG,CAAC,EAAE,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;KACpC,CAAC;CACH,CAAC;AAEF,MAAM,MAAM,MAAM,GAAG;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;CACb,CAAC;AAGF,MAAM,MAAM,UAAU,GAAG,MAAM,GAAG,KAAK,GAAG,YAAY,GAAG,MAAM,GAAG,MAAM,GAAG,OAAO,GAAG,aAAa,GAAG,KAAK,CAAC;AAG3G,MAAM,MAAM,MAAM,GAAG;IACnB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,IAAI,EAAE,UAAU,CAAC;IACjB,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,CAAC;AAGF,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,MAAM,CAAC;IACX,WAAW,EAAE;QACX,UAAU,EAAE,MAAM,CAAC;QACnB,KAAK,EAAE,MAAM,CAAC;QACd,GAAG,EAAE,MAAM,CAAC;KACb,CAAC;CACH;AAGD,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE;QACX,UAAU,EAAE,MAAM,CAAC;QACnB,KAAK,EAAE,MAAM,CAAC;QACd,GAAG,EAAE,MAAM,CAAC;KACb,CAAC;IACF,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;CAC7C;AAGD,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,IAAI,EAAE,MAAM,CAAC;CACd;AAGD,MAAM,WAAW,YAAY;IAC3B,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,MAAM,EAAE,OAAO,CAAC;CACjB;AAGD,MAAM,WAAW,kBAAkB;IACjC,KAAK,EAAE,MAAM,CAAC;IACd,6BAA6B,EAAE,IAAI,GAAG,IAAI,CAAC;IAC3C,YAAY,EAAE,MAAM,CAAC;IACrB,wBAAwB,EAAE,MAAM,CAAC;IACjC,SAAS,EAAE,MAAM,CAAC;CACnB;AAID,MAAM,WAAW,aAAa;IAC5B,aAAa,EAAE,MAAM,CAAC;IACtB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,mBAAmB,EAAE,OAAO,CAAC;IAC7B,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,eAAe,EAAE,MAAM,CAAC;CACzB"}

package/dist/src/components/TwoPaneLayout/DownloadModal.d.ts

@@ -0,0 +1,11 @@
+import { default as React } from 'react';
+export interface DownloadModalProps {
+    open: boolean;
+    onClose: () => void;
+    onDownloadSVG?: () => void;
+    onDownloadPNG?: () => void;
+    plotTitle: string;
+}
+declare const DownloadModal: React.FC<DownloadModalProps>;
+export default DownloadModal;
+//# sourceMappingURL=DownloadModal.d.ts.map

package/dist/src/components/TwoPaneLayout/DownloadModal.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"DownloadModal.d.ts","sourceRoot":"","sources":["../../../../src/components/TwoPaneLayout/DownloadModal.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAI1B,MAAM,WAAW,kBAAkB;IACjC,IAAI,EAAE,OAAO,CAAC;IACd,OAAO,EAAE,MAAM,IAAI,CAAC;IACpB,aAAa,CAAC,EAAE,MAAM,IAAI,CAAC;IAC3B,aAAa,CAAC,EAAE,MAAM,IAAI,CAAC;IAC3B,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,QAAA,MAAM,aAAa,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CA2C/C,CAAC;AAEF,eAAe,aAAa,CAAC"}

package/dist/src/components/TwoPaneLayout/FigurePanel.d.ts

@@ -0,0 +1,12 @@
+import { default as React } from 'react';
+type Figure = {
+    title: string;
+    component: React.ReactNode;
+};
+type FigurePanelProps = {
+    value: number;
+    figures: Figure[];
+};
+export default function FigurePanel({ value, figures }: FigurePanelProps): import("react/jsx-runtime").JSX.Element[];
+export {};
+//# sourceMappingURL=FigurePanel.d.ts.map

package/dist/src/components/TwoPaneLayout/FigurePanel.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"FigurePanel.d.ts","sourceRoot":"","sources":["../../../../src/components/TwoPaneLayout/FigurePanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAmB,MAAM,OAAO,CAAC;AAGxC,KAAK,MAAM,GAAG;IACZ,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,KAAK,CAAC,SAAS,CAAC;CAC5B,CAAC;AAEF,KAAK,gBAAgB,GAAG;IACtB,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAAC;AAEF,MAAM,CAAC,OAAO,UAAU,WAAW,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,gBAAgB,6CAyBvE"}

package/dist/src/components/TwoPaneLayout/TwoPaneLayout.d.ts

@@ -0,0 +1,4 @@
+import { TwoPaneLayoutProps } from './types';
+declare const TwoPaneLayout: ({ TableComponent, plots, direction }: TwoPaneLayoutProps) => import("react/jsx-runtime").JSX.Element;
+export default TwoPaneLayout;
+//# sourceMappingURL=TwoPaneLayout.d.ts.map

package/dist/src/components/TwoPaneLayout/TwoPaneLayout.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"TwoPaneLayout.d.ts","sourceRoot":"","sources":["../../../../src/components/TwoPaneLayout/TwoPaneLayout.tsx"],"names":[],"mappings":"AAkBA,OAAO,KAAK,EAAkC,kBAAkB,EAAE,MAAM,SAAS,CAAC;AAsBlF,QAAA,MAAM,aAAa,GAAI,sCAA8C,kBAAkB,4CAkMtF,CAAC;AAEF,eAAe,aAAa,CAAC"}

package/dist/src/components/TwoPaneLayout/index.d.ts

@@ -0,0 +1,3 @@
+export { default as TwoPaneLayout } from './TwoPaneLayout';
+export type { TwoPanePlotConfig, TwoPaneLayoutProps, Direction, ResponsiveDirection } from './types';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/components/TwoPaneLayout/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/components/TwoPaneLayout/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAC3D,YAAY,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,SAAS,EAAE,mBAAmB,EAAE,MAAM,SAAS,CAAC"}

package/dist/src/components/TwoPaneLayout/types.d.ts

@@ -0,0 +1,17 @@
+import { TabOwnProps } from '@mui/material';
+import { default as React } from 'react';
+export type Direction = "row" | "column";
+export type ResponsiveDirection = Direction | Partial<Record<"xs" | "sm" | "md" | "lg" | "xl", Direction>>;
+export type TwoPanePlotConfig = {
+    tabTitle: string;
+    icon?: TabOwnProps["icon"];
+    plotComponent: React.ReactNode;
+    onDownloadSVG?: () => void;
+    onDownloadPNG?: () => void;
+};
+export type TwoPaneLayoutProps = {
+    TableComponent: React.ReactNode;
+    plots: readonly TwoPanePlotConfig[];
+    direction?: ResponsiveDirection;
+};
+//# sourceMappingURL=types.d.ts.map

package/dist/src/components/TwoPaneLayout/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../../src/components/TwoPaneLayout/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AACjD,OAAO,KAAK,KAAK,MAAM,OAAO,CAAC;AAE/B,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,QAAQ,CAAC;AACzC,MAAM,MAAM,mBAAmB,GAAG,SAAS,GAAG,OAAO,CAAC,MAAM,CAAC,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,GAAG,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC;AAE3G,MAAM,MAAM,iBAAiB,GAAG;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC,CAAC;IAC3B,aAAa,EAAE,KAAK,CAAC,SAAS,CAAC;IAC/B,aAAa,CAAC,EAAE,MAAM,IAAI,CAAC;IAC3B,aAAa,CAAC,EAAE,MAAM,IAAI,CAAC;CAC5B,CAAC;AAEF,MAAM,MAAM,kBAAkB,GAAG;IAC/B,cAAc,EAAE,KAAK,CAAC,SAAS,CAAC;IAChC,KAAK,EAAE,SAAS,iBAAiB,EAAE,CAAC;IACpC,SAAS,CAAC,EAAE,mBAAmB,CAAC;CACjC,CAAC"}

package/dist/src/index.d.ts

@@ -3,9 +3,11 @@ export type { SliderProps } from './components/RangeSlider';
 export { DataTable } from './components/DataTable';
 export type { DataTableProps, DataTableColumn } from './components/DataTable';
 export { Table } from './components/Table';
-export type * from './components/Table';
+export type { TableColDef, TableProps } from './components/Table';
 export * from './components/BiosampleTable';
 export type * from './components/BiosampleTable';
-export * from './components/GenomeSearch';
-export type * from './components/GenomeSearch';
+export { GenomeSearch, useEntityAutocomplete } from './components/GenomeSearch';
+export type { GenomeSearchProps, Result, Domain, ResultType } from './components/GenomeSearch';
+export { TwoPaneLayout } from './components/TwoPaneLayout';
+export type { TwoPanePlotConfig, TwoPaneLayoutProps, ResponsiveDirection } from './components/TwoPaneLayout';
 //# sourceMappingURL=index.d.ts.map

package/dist/src/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,YAAY,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,YAAY,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAE9E,OAAO,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAC3C,mBAAmB,oBAAoB,CAAC;AAExC,cAAc,6BAA6B,CAAC;AAC5C,mBAAmB,6BAA6B,CAAC;AAEjD,cAAc,2BAA2B,CAAC;AAC1C,mBAAmB,2BAA2B,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,YAAY,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AAE5D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,YAAY,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAE9E,OAAO,EAAE,KAAK,EAAE,MAAM,oBAAoB,CAAC;AAC3C,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAElE,cAAc,6BAA6B,CAAC;AAC5C,mBAAmB,6BAA6B,CAAC;AAEjD,OAAO,EAAE,YAAY,EAAE,qBAAqB,EAAE,MAAM,2BAA2B,CAAC;AAChF,YAAY,EAAE,iBAAiB,EAAE,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,2BAA2B,CAAC;AAE/F,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC;AAC3D,YAAY,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,mBAAmB,EAAE,MAAM,4BAA4B,CAAC"}

package/dist/ui-components.es.js

@@ -2,40 +2,42 @@ import { default as e } from "./ui-components.es2.js";
 import { default as r } from "./ui-components.es3.js";
 import { default as c } from "./ui-components.es4.js";
 import { default as s } from "./ui-components.es5.js";
-import { BiosampleTable as i, initialTableState as d } from "./ui-components.es6.js";
-import { AssayWheel as p } from "./ui-components.es7.js";
-import { DownloadButton as x } from "./ui-components.es8.js";
-import { allColsHidden as h, assaysCol as S, atacExpCol as g, atacFileIdCol as k, atacSignalUrlCol as u, atacZscoreUrlCol as E, ccreBedUrlCol as y, ccreBigBedUrlCol as B, chromHmmUrlCol as F, collectionCol as I, columns as T, ctcfExpCol as Z, ctcfFileIdCol as b, ctcfSignalUrlCol as D, ctcfZscoreUrlCol as A, displayNameCol as H, dnaseExpCol as q, dnaseFileIdCol as w, dnaseSignalUrlCol as G, dnaseZscoreUrlCol as N, h3k27acExpCol as R, h3k27acFileIdCol as W, h3k27acSignalUrlCol as j, h3k27acZscoreUrlCol as v, h3k4me3ExpCol as z, h3k4me3FileIdCol as J, h3k4me3SignalUrlCol as K, h3k4me3ZscoreUrlCol as L, lifeStageCol as M, ontologyCol as O, rnaSeqCheckCol as P, sampleTypeCol as Q } from "./ui-components.es9.js";
-import { useEncodeBiosampleData as X } from "./ui-components.es10.js";
-import { useEntityAutocomplete as _ } from "./ui-components.es11.js";
+import { default as d } from "./ui-components.es6.js";
+import { AssayWheel as n } from "./ui-components.es7.js";
+import { BiosampleTable as f, initialTableState as x } from "./ui-components.es8.js";
+import { DownloadButton as h } from "./ui-components.es9.js";
+import { allColsHidden as S, assaysCol as g, atacExpCol as k, atacFileIdCol as y, atacSignalUrlCol as E, atacZscoreUrlCol as B, ccreBedUrlCol as T, ccreBigBedUrlCol as F, chromHmmUrlCol as I, collectionCol as Z, columns as b, ctcfExpCol as D, ctcfFileIdCol as w, ctcfSignalUrlCol as A, ctcfZscoreUrlCol as H, displayNameCol as q, dnaseExpCol as G, dnaseFileIdCol as L, dnaseSignalUrlCol as N, dnaseZscoreUrlCol as P, h3k27acExpCol as R, h3k27acFileIdCol as W, h3k27acSignalUrlCol as j, h3k27acZscoreUrlCol as v, h3k4me3ExpCol as z, h3k4me3FileIdCol as J, h3k4me3SignalUrlCol as K, h3k4me3ZscoreUrlCol as M, lifeStageCol as O, ontologyCol as Q, rnaSeqCheckCol as V, sampleTypeCol as X } from "./ui-components.es10.js";
+import { useEncodeBiosampleData as _ } from "./ui-components.es11.js";
+import { useEntityAutocomplete as ll } from "./ui-components.es12.js";
 export {
-  p as AssayWheel,
-  i as BiosampleTable,
-  r as DataTable,
-  x as DownloadButton,
-  s as GenomeSearch,
-  e as RangeSlider,
-  c as Table,
-  h as allColsHidden,
-  S as assaysCol,
-  g as atacExpCol,
-  k as atacFileIdCol,
-  u as atacSignalUrlCol,
-  E as atacZscoreUrlCol,
-  y as ccreBedUrlCol,
-  B as ccreBigBedUrlCol,
-  F as chromHmmUrlCol,
-  I as collectionCol,
-  T as columns,
-  Z as ctcfExpCol,
-  b as ctcfFileIdCol,
-  D as ctcfSignalUrlCol,
-  A as ctcfZscoreUrlCol,
-  H as displayNameCol,
-  q as dnaseExpCol,
-  w as dnaseFileIdCol,
-  G as dnaseSignalUrlCol,
-  N as dnaseZscoreUrlCol,
+  n as AssayWheel,
+  f as BiosampleTable,
+  e as DataTable,
+  h as DownloadButton,
+  r as GenomeSearch,
+  c as RangeSlider,
+  s as Table,
+  d as TwoPaneLayout,
+  S as allColsHidden,
+  g as assaysCol,
+  k as atacExpCol,
+  y as atacFileIdCol,
+  E as atacSignalUrlCol,
+  B as atacZscoreUrlCol,
+  T as ccreBedUrlCol,
+  F as ccreBigBedUrlCol,
+  I as chromHmmUrlCol,
+  Z as collectionCol,
+  b as columns,
+  D as ctcfExpCol,
+  w as ctcfFileIdCol,
+  A as ctcfSignalUrlCol,
+  H as ctcfZscoreUrlCol,
+  q as displayNameCol,
+  G as dnaseExpCol,
+  L as dnaseFileIdCol,
+  N as dnaseSignalUrlCol,
+  P as dnaseZscoreUrlCol,
   R as h3k27acExpCol,
   W as h3k27acFileIdCol,
   j as h3k27acSignalUrlCol,
@@ -43,13 +45,13 @@ export {
   z as h3k4me3ExpCol,
   J as h3k4me3FileIdCol,
   K as h3k4me3SignalUrlCol,
-  L as h3k4me3ZscoreUrlCol,
-  d as initialTableState,
-  M as lifeStageCol,
-  O as ontologyCol,
-  P as rnaSeqCheckCol,
-  Q as sampleTypeCol,
-  X as useEncodeBiosampleData,
-  _ as useEntityAutocomplete
+  M as h3k4me3ZscoreUrlCol,
+  x as initialTableState,
+  O as lifeStageCol,
+  Q as ontologyCol,
+  V as rnaSeqCheckCol,
+  X as sampleTypeCol,
+  _ as useEncodeBiosampleData,
+  ll as useEntityAutocomplete
 };
 //# sourceMappingURL=ui-components.es.js.map

package/dist/ui-components.es.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;"}
+{"version":3,"file":"ui-components.es.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;"}

package/dist/ui-components.es10.js

@@ -1,33 +1,332 @@
-import { useState as s, useEffect as f } from "react";
-const w = ({
-  assembly: n,
-  skip: a
-}) => {
-  const [c, e] = s(!1), [l, i] = s(!1), [u, d] = s(void 0), o = n === "GRCh38" ? "https://downloads.wenglab.org/human_biosamples_tracks_metadata.json" : "https://downloads.wenglab.org/mouse_biosamples_tracks_metadata.json";
-  return f(() => {
-    a || (async () => {
-      try {
-        e(!0);
-        const t = await fetch(o);
-        if (!t.ok)
-          throw new Error(`Response status: ${t.status}`);
-        const r = (await t.json())?.data?.ccREBiosampleQuery?.biosamples;
-        if (!r)
-          throw new Error("No biosamples present in return data");
-        d(r);
-      } catch {
-        i(!0);
-      } finally {
-        e(!1);
-      }
-    })();
-  }, [o, a]), {
-    data: u,
-    loading: c,
-    error: l
+import { j as a } from "./ui-components.es13.js";
+import { isAutogeneratedRow as u, gridRowIdSelector as y, gridRowNodeSelector as p } from "@mui/x-data-grid-premium";
+import { AssayWheel as h } from "./ui-components.es7.js";
+import { DownloadButton as o } from "./ui-components.es9.js";
+import { AggregateDownloadButton as C, getAvailableFiles as b } from "./ui-components.es59.js";
+import { Tooltip as N, Stack as x, capitalize as d } from "@mui/material";
+import { InfoOutline as v, Check as w } from "@mui/icons-material";
+const k = {
+  field: "ontology",
+  headerName: "Organ/Tissue",
+  type: "singleSelect",
+  valueOptions: ["adipose", "adrenal gland", "blood", "blood vessel", "bone", "bone marrow", "brain", "breast", "connective tissue", "embryo", "epithelium", "esophagus", "eye", "fallopian tube", "gallbladder", "heart", "kidney", "large intestine", "limb", "liver", "lung", "lymphoid tissue", "mouth", "muscle", "nerve", "nose", "ovary", "pancreas", "paraythroid gland", "penis", "placenta", "prostate", "skin", "small intestine", "spinal cord", "spleen", "stomach", "testis", "thymus", "thyroid", "urinary bladder", "uterus", "vagina"],
+  valueFormatter: (e) => e && d(e)
+}, E = {
+  field: "displayname",
+  headerName: "Biosample",
+  valueFormatter: (e) => e && d(e),
+  maxWidth: 300
+}, A = {
+  field: "sampleType",
+  headerName: "Sample Type",
+  type: "singleSelect",
+  valueOptions: ["tissue", "primary cell", "cell line", "in vitro differentiated cells", "organoid"],
+  valueFormatter: (e) => e && d(e)
+}, D = {
+  field: "lifeStage",
+  headerName: "Life Stage",
+  type: "singleSelect",
+  valueOptions: ["adult", "embryonic"],
+  valueFormatter: (e) => e && d(e)
+}, S = {
+  field: "assays",
+  headerName: "Assays",
+  valueGetter: (e, l) => {
+    const s = [];
+    return l.dnase_experiment_accession && s.push("DNase"), l.atac_experiment_accession && s.push("ATAC"), l.h3k4me3_experiment_accession && s.push("H3K4me3"), l.h3k27ac_experiment_accession && s.push("H3K27ac"), l.ctcf_experiment_accession && s.push("CTCF"), s.join(",");
+  },
+  sortComparator: (e, l) => {
+    const s = e.split(",").filter((i) => i.length > 0).length, r = l.split(",").filter((i) => i.length > 0).length;
+    return s - r;
+  },
+  renderCell: (e) => {
+    if (e.rowNode.type === "group") return null;
+    const l = e.row;
+    return /* @__PURE__ */ a.jsx("div", { onClick: (s) => s.stopPropagation(), children: /* @__PURE__ */ a.jsx(h, { row: {
+      dnase: l.dnase_experiment_accession,
+      atac: l.atac_experiment_accession,
+      h3k4me3: l.h3k4me3_experiment_accession,
+      h3k27ac: l.h3k27ac_experiment_accession,
+      ctcf: l.ctcf_experiment_accession
+    } }) });
+  },
+  groupable: !1
+}, _ = ["Core", "Partial", "Ancillary"], n = (e) => !!e && e !== "NA", f = (e) => {
+  const l = {
+    dnase: n(e.dnase_file_accession),
+    h3k4me3: n(e.h3k4me3_file_accession),
+    h3k27ac: n(e.h3k27ac_file_accession),
+    ctcf: n(e.ctcf_file_accession),
+    atac: n(e.atac_file_accession)
   };
+  if (!Object.values(l).includes(!0)) return null;
+  let s = "Ancillary";
+  return l.dnase && (s = "Partial", l.ctcf && l.h3k4me3 && l.h3k27ac && (s = "Core")), s;
+}, g = [..._, null], H = {
+  field: "collection",
+  headerName: "Collection",
+  type: "singleSelect",
+  valueOptions: [..._],
+  valueGetter: (e, l) => f(l),
+  renderCell: (e) => {
+    const l = e.row;
+    return l.dnase_experiment_accession && !n(l.dnase_file_accession) || l.h3k4me3_experiment_accession && !n(l.h3k4me3_file_accession) || l.h3k27ac_experiment_accession && !n(l.h3k27ac_file_accession) || l.ctcf_experiment_accession && !n(l.ctcf_file_accession) ? /* @__PURE__ */ a.jsx(N, { title: "This sample's H3K4me3 experiment data was not run through the ENCODE pipeline. This assay is ignored when placing this sample in its given collection", children: /* @__PURE__ */ a.jsxs(x, { direction: "row", alignItems: "center", children: [
+      l.name === "GM12866_ENCDO000ABQ" ? "NA" : f(l),
+      /* @__PURE__ */ a.jsx(v, { fontSize: "small" })
+    ] }) }) : f(l);
+  },
+  sortComparator: (e, l) => g.indexOf(e) - g.indexOf(l)
+}, F = {
+  field: "dnase_experiment_accession",
+  headerName: "DNase Exp. ID",
+  sortable: !1,
+  groupable: !1
+}, T = {
+  field: "h3k4me3_experiment_accession",
+  headerName: "H3K4me3 Exp. ID",
+  sortable: !1,
+  groupable: !1
+}, j = {
+  field: "h3k27ac_experiment_accession",
+  headerName: "H3K27ac Exp. ID",
+  sortable: !1,
+  groupable: !1
+}, K = {
+  field: "ctcf_experiment_accession",
+  headerName: "CTCF Exp. ID",
+  sortable: !1,
+  groupable: !1
+}, R = {
+  field: "atac_experiment_accession",
+  headerName: "ATAC Exp. ID",
+  sortable: !1,
+  groupable: !1
+}, $ = {
+  field: "dnase_file_accession",
+  headerName: "DNase File ID",
+  sortable: !1,
+  groupable: !1
+}, O = {
+  field: "h3k4me3_file_accession",
+  headerName: "H3K4me3 File ID",
+  sortable: !1,
+  groupable: !1
+}, Z = {
+  field: "h3k27ac_file_accession",
+  headerName: "H3K27ac File ID",
+  sortable: !1,
+  groupable: !1
+}, I = {
+  field: "ctcf_file_accession",
+  headerName: "CTCF File ID",
+  sortable: !1,
+  groupable: !1
+}, G = {
+  field: "atac_file_accession",
+  headerName: "ATAC File ID",
+  sortable: !1,
+  groupable: !1
+}, B = {
+  field: "dnaseZ",
+  headerName: "DNase Z-scores",
+  valueGetter: (e, l) => l.dnase_experiment_accession && l.dnase_file_accession ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${l.dnase_experiment_accession}-${l.dnase_file_accession}.tsv` : null,
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download DNase z-score by cCRE (.tsv) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "DNase", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, U = {
+  field: "h3k4me3Z",
+  headerName: "H3K4me3 Z-scores",
+  valueGetter: (e, l) => (
+    //check if file exists to handle the two samples with unprocessed h3k4me3 experiments: GM12866_ENCDO000ABQ & neural_crest_cell_ENCDO222AAA
+    l.h3k4me3_experiment_accession && n(l.h3k4me3_file_accession) ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${l.h3k4me3_experiment_accession}-${l.h3k4me3_file_accession}.tsv` : null
+  ),
+  renderCell: (e) => {
+    if (["GM12866_ENCDO000ABQ", "neural_crest_cell_ENCDO222AAA"].includes(e.row.name)) return /* @__PURE__ */ a.jsx(o, { disabled: !0, message: () => "This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus z-scores are not available", url: e.value, displayName: e.row.displayname, assay: "H3K4me3", ontology: e.row.ontology });
+    if (e.rowNode.type !== "group" && e.value) return /* @__PURE__ */ a.jsx(o, { message: (l) => `Download H3K4me3 z-score by cCRE (.tsv) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "H3K4me3", ontology: e.row.ontology });
+  },
+  groupable: !1,
+  sortable: !1
+}, M = {
+  field: "h3k27acZ",
+  headerName: "H3K27ac Z-scores",
+  valueGetter: (e, l) => l.h3k27ac_experiment_accession && l.h3k27ac_file_accession ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${l.h3k27ac_experiment_accession}-${l.h3k27ac_file_accession}.tsv` : null,
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download H3K27ac z-score by cCRE (.tsv) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "H3K27ac", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, z = {
+  field: "ctcfZ",
+  headerName: "CTCF Z-scores",
+  valueGetter: (e, l) => l.ctcf_experiment_accession && l.ctcf_file_accession ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${l.ctcf_experiment_accession}-${l.ctcf_file_accession}.tsv` : null,
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download CTCF z-score by cCRE (.tsv) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "CTCF", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, W = {
+  field: "atacZ",
+  headerName: "ATAC Z-scores",
+  valueGetter: (e, l) => l.atac_experiment_accession && l.atac_file_accession ? `https://downloads.wenglab.org/Registry-V4/SCREEN/Signal-Files/${l.atac_experiment_accession}-${l.atac_file_accession}.tsv` : null,
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download ATAC z-score by cCRE (.tsv) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "ATAC", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, V = {
+  field: "dnase_signal_url",
+  headerName: "DNase Signal",
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download DNase Signal (.bigWig) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "DNase", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, q = {
+  field: "h3k4me3_signal_url",
+  headerName: "H3K4me3 Signal",
+  valueGetter: (e, l) => l.h3k4me3_file_accession === "NA" ? null : e,
+  renderCell: (e) => {
+    if (["GM12866_ENCDO000ABQ", "neural_crest_cell_ENCDO222AAA"].includes(e.row.name)) return /* @__PURE__ */ a.jsx(o, { disabled: !0, message: () => "This sample's H3K4me3 experiment was not run through the ENCODE Pipeline and thus the signal file is not available", url: e.value, displayName: e.row.displayname, assay: "H3K4me3", ontology: e.row.ontology });
+    if (e.rowNode.type !== "group" && e.value) return /* @__PURE__ */ a.jsx(o, { message: (l) => `Download H3K4me3 Signal (.bigWig) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "H3K4me3", ontology: e.row.ontology });
+  },
+  groupable: !1,
+  sortable: !1
+}, P = {
+  field: "h3k27ac_signal_url",
+  headerName: "H3K27ac Signal",
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download H3K27ac Signal (.bigWig) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "H3K27ac", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, Q = {
+  field: "ctcf_signal_url",
+  headerName: "CTCF Signal",
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download CTCF Signal (.bigWig) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "CTCF", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, L = {
+  field: "atac_signal_url",
+  headerName: "ATAC Signal",
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download ATAC Signal (.bigWig) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "ATAC", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, J = {
+  field: "chromhmm_url",
+  headerName: "ChromHMM States",
+  renderCell: (e) => e.rowNode.type !== "group" && e.value && /* @__PURE__ */ a.jsx(o, { message: (l) => `Download ChromHMM States (.bigBed) - ${l}`, url: e.value, displayName: e.row.displayname, assay: "ChromHMM", ontology: e.row.ontology }),
+  groupable: !1,
+  sortable: !1
+}, X = {
+  field: "bedurl",
+  headerName: "cCREs (.bed)",
+  align: "center",
+  valueGetter: (e, l, s, r) => {
+    if (u(l)) {
+      const t = y(r, l), c = p(r, t);
+      return c.type === "group" && c.groupingField === "ontology" && typeof c.groupingKey == "string" ? b(c.groupingKey).map((m) => `https://downloads.wenglab.org/${m.filename}`).join(",") : null;
+    }
+    const i = [l.dnase_file_accession, l.h3k4me3_file_accession, l.h3k27ac_file_accession, l.ctcf_file_accession].filter((t) => t != null && t !== "NA");
+    return i.length ? `https://downloads.wenglab.org/Registry-V4/${i.join("_")}.bed` : null;
+  },
+  renderCell: (e) => {
+    if (e.rowNode.type === "group")
+      if (e.rowNode.groupingField === "ontology") {
+        const l = e.rowNode.groupingKey ?? "";
+        return /* @__PURE__ */ a.jsx(C, { ontology: l });
+      } else return null;
+    return /* @__PURE__ */ a.jsx(
+      o,
+      {
+        message: (l) => e.value ? `Download cCREs (.bed) - ${l}` : "cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data",
+        url: e.value,
+        disabled: !e.value,
+        displayName: e.row.displayname,
+        assay: "cCREs",
+        ontology: e.row.ontology
+      }
+    );
+  },
+  groupable: !1,
+  sortable: !1
+}, Y = {
+  field: "bigbedurl",
+  headerName: "cCREs (.bigBed)",
+  align: "center",
+  valueGetter: (e, l) => l.name === "GM12866_ENCDO000ABQ" ? null : l.name === "neural_crest_cell_ENCDO222AAA" ? e.replaceAll("_NA_", "_") : e,
+  renderCell: (e) => e.rowNode.type !== "group" && /* @__PURE__ */ a.jsx(
+    o,
+    {
+      message: (l) => e.value ? `Download cCREs (.bigBed) - ${l}` : "cCREs only available for samples with DNase, H3K4me3, H3H27ac, and/or CTCF data",
+      url: e.value,
+      disabled: !e.value,
+      displayName: e.row.displayname,
+      assay: "cCREs",
+      ontology: e.row.ontology
+    }
+  ),
+  groupable: !1,
+  sortable: !1
+}, ee = {
+  field: "rnaSeq",
+  headerName: "Has RNA Seq",
+  type: "boolean",
+  valueGetter: (e, l) => u(l) ? null : !!l?.rna_seq_tracks?.length,
+  renderCell: (e) => e.value ? /* @__PURE__ */ a.jsx(w, {}) : null
+}, ce = [E, S, k, A, D, H, X, Y, F, $, B, V, R, G, W, L, T, O, U, q, j, Z, M, P, K, I, z, Q, J, ee], de = {
+  displayname: !1,
+  assays: !1,
+  ontology: !1,
+  sampleType: !1,
+  lifeStage: !1,
+  collection: !1,
+  bedurl: !1,
+  bigbedurl: !1,
+  dnase_experiment_accession: !1,
+  dnase_file_accession: !1,
+  dnaseZ: !1,
+  dnase_signal_url: !1,
+  atac_experiment_accession: !1,
+  atac_file_accession: !1,
+  atacZ: !1,
+  atac_signal_url: !1,
+  h3k4me3_experiment_accession: !1,
+  h3k4me3_file_accession: !1,
+  h3k4me3Z: !1,
+  h3k4me3_signal_url: !1,
+  h3k27ac_experiment_accession: !1,
+  h3k27ac_file_accession: !1,
+  h3k27acZ: !1,
+  h3k27ac_signal_url: !1,
+  ctcf_experiment_accession: !1,
+  ctcf_file_accession: !1,
+  ctcfZ: !1,
+  ctcf_signal_url: !1,
+  chromhmm_url: !1,
+  rnaSeq: !1
 };
 export {
-  w as useEncodeBiosampleData
+  de as allColsHidden,
+  S as assaysCol,
+  R as atacExpCol,
+  G as atacFileIdCol,
+  L as atacSignalUrlCol,
+  W as atacZscoreUrlCol,
+  X as ccreBedUrlCol,
+  Y as ccreBigBedUrlCol,
+  J as chromHmmUrlCol,
+  H as collectionCol,
+  ce as columns,
+  K as ctcfExpCol,
+  I as ctcfFileIdCol,
+  Q as ctcfSignalUrlCol,
+  z as ctcfZscoreUrlCol,
+  E as displayNameCol,
+  F as dnaseExpCol,
+  $ as dnaseFileIdCol,
+  V as dnaseSignalUrlCol,
+  B as dnaseZscoreUrlCol,
+  j as h3k27acExpCol,
+  Z as h3k27acFileIdCol,
+  P as h3k27acSignalUrlCol,
+  M as h3k27acZscoreUrlCol,
+  T as h3k4me3ExpCol,
+  O as h3k4me3FileIdCol,
+  q as h3k4me3SignalUrlCol,
+  U as h3k4me3ZscoreUrlCol,
+  D as lifeStageCol,
+  k as ontologyCol,
+  ee as rnaSeqCheckCol,
+  A as sampleTypeCol
 };
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