@weng-lab/ui-components 2.0.0 → 2.0.2

package/dist/ui-components.es46.js

@@ -1,464 +1,215 @@
-import * as le from "react";
-import { createElement as re } from "react";
-import e from "./ui-components.es81.js";
-import { clsx as R } from "./ui-components.es80.js";
-import y from "./ui-components.es82.js";
-import f, { getTablePaginationUtilityClass as ie } from "./ui-components.es189.js";
-import m from "./ui-components.es122.js";
-import { j as i } from "./ui-components.es12.js";
-import { useDefaultProps as ce } from "./ui-components.es85.js";
-import pe from "./ui-components.es190.js";
-import x from "./ui-components.es43.js";
-import v from "./ui-components.es123.js";
-import u from "./ui-components.es40.js";
-import me from "./ui-components.es47.js";
-import ue from "./ui-components.es86.js";
-import be from "./ui-components.es72.js";
-import de from "./ui-components.es49.js";
-import fe from "./ui-components.es129.js";
-import S from "./ui-components.es182.js";
-import ge from "./ui-components.es111.js";
-var M;
-const Te = u(x, {
-  name: "MuiTablePagination",
-  slot: "Root"
-})(y(({
-  theme: t
-}) => ({
-  overflow: "auto",
-  color: (t.vars || t).palette.text.primary,
-  fontSize: t.typography.pxToRem(14),
-  // Increase the specificity to override TableCell.
-  "&:last-child": {
-    padding: 0
-  }
-}))), ye = u(de, {
-  name: "MuiTablePagination",
-  slot: "Toolbar",
-  overridesResolver: (t, o) => ({
-    [`& .${f.actions}`]: o.actions,
-    ...o.toolbar
-  })
-})(y(({
-  theme: t
-}) => ({
-  minHeight: 52,
-  paddingRight: 2,
-  [`${t.breakpoints.up("xs")} and (orientation: landscape)`]: {
-    minHeight: 52
-  },
-  [t.breakpoints.up("sm")]: {
-    minHeight: 52,
-    paddingRight: 2
-  },
-  [`& .${f.actions}`]: {
-    flexShrink: 0,
-    marginLeft: 20
-  }
-}))), Pe = u("div", {
-  name: "MuiTablePagination",
-  slot: "Spacer"
-})({
-  flex: "1 1 100%"
-}), he = u("p", {
-  name: "MuiTablePagination",
-  slot: "SelectLabel"
-})(y(({
-  theme: t
-}) => ({
-  ...t.typography.body2,
-  flexShrink: 0
-}))), Ie = u(fe, {
-  name: "MuiTablePagination",
-  slot: "Select",
-  overridesResolver: (t, o) => ({
-    [`& .${f.selectIcon}`]: o.selectIcon,
-    [`& .${f.select}`]: o.select,
-    ...o.input,
-    ...o.selectRoot
-  })
-})({
-  color: "inherit",
-  fontSize: "inherit",
-  flexShrink: 0,
-  marginRight: 32,
-  marginLeft: 8,
-  [`& .${f.select}`]: {
-    paddingLeft: 8,
-    paddingRight: 24,
-    textAlign: "right",
-    textAlignLast: "right"
-    // Align <select> on Chrome.
-  }
-}), Re = u(be, {
-  name: "MuiTablePagination",
-  slot: "MenuItem"
-})({}), Se = u("p", {
-  name: "MuiTablePagination",
-  slot: "DisplayedRows"
-})(y(({
-  theme: t
-}) => ({
-  ...t.typography.body2,
-  flexShrink: 0
-})));
-function xe({
-  from: t,
-  to: o,
-  count: a
-}) {
-  return `${t}–${o} of ${a !== -1 ? a : `more than ${o}`}`;
+function p(t, i) {
+  const e = [];
+  t = t.replace(/,/g, "");
+  let c, o, r;
+  if (t.includes(":") && t.includes("-"))
+    c = t.split(":")[0], o = parseInt(t.split(":")[1].split("-")[0]) || 0, r = parseInt(t.split(":")[1].split("-")[1]) || o + 1e3;
+  else if (t.includes("	")) {
+    const [h, l, d] = t.split("	");
+    c = h, o = parseInt(l), r = parseInt(d);
+  } else
+    return e;
+  const s = c.replace(/chrx$/, "chrX").replace(/chry$/, "chrY"), a = m[i][c];
+  return r > o && a && r <= a && e.push({
+    title: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    domain: {
+      chromosome: s,
+      start: o,
+      end: r
+    },
+    description: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
+    type: "Coordinate"
+  }), e;
 }
-function je(t) {
-  return `Go to ${t} page`;
+function n(t, i, e) {
+  return t ? t.slice(0, i).map((c) => ({
+    title: e.getTitle(c),
+    description: e.getDescription(c),
+    domain: {
+      chromosome: c.coordinates.chromosome,
+      start: c.coordinates.start,
+      end: c.coordinates.end
+    },
+    type: e.type
+  })) : [];
+}
+function g(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.id,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "SNP"
+  });
 }
-const we = (t) => {
-  const {
-    classes: o
-  } = t;
-  return ue({
-    root: ["root"],
-    toolbar: ["toolbar"],
-    spacer: ["spacer"],
-    selectLabel: ["selectLabel"],
-    select: ["select"],
-    input: ["input"],
-    selectIcon: ["selectIcon"],
-    menuItem: ["menuItem"],
-    displayedRows: ["displayedRows"],
-    actions: ["actions"]
-  }, ie, o);
-}, Be = /* @__PURE__ */ le.forwardRef(function(o, a) {
-  const g = ce({
-    props: o,
-    name: "MuiTablePagination"
-  }), {
-    ActionsComponent: T = pe,
-    backIconButtonProps: C,
-    colSpan: $,
-    component: P = x,
-    count: c,
-    disabled: j = !1,
-    getItemAriaLabel: k = je,
-    labelDisplayedRows: N = xe,
-    labelRowsPerPage: A = "Rows per page:",
-    nextIconButtonProps: D,
-    onPageChange: q,
-    onRowsPerPageChange: O,
-    page: d,
-    rowsPerPage: b,
-    rowsPerPageOptions: h = [10, 25, 50, 100],
-    SelectProps: E = {},
-    showFirstButton: F = !1,
-    showLastButton: H = !1,
-    slotProps: I = {},
-    slots: w = {},
-    ...U
-  } = g, r = g, n = we(r), s = I?.select ?? E, z = s.native ? "option" : Re;
-  let B;
-  (P === x || P === "td") && (B = $ || 1e3);
-  const G = v(s.id), L = v(s.labelId), _ = () => c === -1 ? (d + 1) * b : b === -1 ? c : Math.min(c, (d + 1) * b), p = {
-    slots: w,
-    slotProps: I
-  }, [V, J] = m("root", {
-    ref: a,
-    className: n.root,
-    elementType: Te,
-    externalForwardedProps: {
-      ...p,
-      component: P,
-      ...U
+function $(t, i, e) {
+  return n(t, i, {
+    getTitle: (c) => c.name,
+    getDescription: (c) => {
+      let o = "";
+      return c.versions.forEach((r, s) => o += "V" + r.version + " " + r.id + (s === c.versions.length - 1 ? "" : `
+`)), `${c.description}
+${o}
+${c.coordinates.chromosome}:${c.coordinates.start}-${c.coordinates.end}`;
     },
-    ownerState: r,
-    additionalProps: {
-      colSpan: B
-    }
-  }), [K, Q] = m("toolbar", {
-    className: n.toolbar,
-    elementType: ye,
-    externalForwardedProps: p,
-    ownerState: r
-  }), [W, X] = m("spacer", {
-    className: n.spacer,
-    elementType: Pe,
-    externalForwardedProps: p,
-    ownerState: r
-  }), [Y, Z] = m("selectLabel", {
-    className: n.selectLabel,
-    elementType: he,
-    externalForwardedProps: p,
-    ownerState: r,
-    additionalProps: {
-      id: L
-    }
-  }), [ee, te] = m("select", {
-    className: n.select,
-    elementType: Ie,
-    externalForwardedProps: p,
-    ownerState: r
-  }), [oe, ne] = m("menuItem", {
-    className: n.menuItem,
-    elementType: z,
-    externalForwardedProps: p,
-    ownerState: r
-  }), [ae, se] = m("displayedRows", {
-    className: n.displayedRows,
-    elementType: Se,
-    externalForwardedProps: p,
-    ownerState: r
+    type: "Gene"
   });
-  return /* @__PURE__ */ i.jsx(V, {
-    ...J,
-    children: /* @__PURE__ */ i.jsxs(K, {
-      ...Q,
-      children: [/* @__PURE__ */ i.jsx(W, {
-        ...X
-      }), h.length > 1 && /* @__PURE__ */ i.jsx(Y, {
-        ...Z,
-        children: A
-      }), h.length > 1 && /* @__PURE__ */ i.jsx(ee, {
-        variant: "standard",
-        ...!s.variant && {
-          input: M || (M = /* @__PURE__ */ i.jsx(me, {}))
-        },
-        value: b,
-        onChange: O,
-        id: G,
-        labelId: L,
-        ...s,
-        classes: {
-          ...s.classes,
-          // TODO v5 remove `classes.input`
-          root: R(n.input, n.selectRoot, (s.classes || {}).root),
-          select: R(n.select, (s.classes || {}).select),
-          // TODO v5 remove `selectIcon`
-          icon: R(n.selectIcon, (s.classes || {}).icon)
-        },
-        disabled: j,
-        ...te,
-        children: h.map((l) => /* @__PURE__ */ re(oe, {
-          ...ne,
-          key: l.label ? l.label : l,
-          value: l.value ? l.value : l
-        }, l.label ? l.label : l))
-      }), /* @__PURE__ */ i.jsx(ae, {
-        ...se,
-        children: N({
-          from: c === 0 ? 0 : d * b + 1,
-          to: _(),
-          count: c === -1 ? -1 : c,
-          page: d
-        })
-      }), /* @__PURE__ */ i.jsx(T, {
-        className: n.actions,
-        backIconButtonProps: C,
-        count: c,
-        nextIconButtonProps: D,
-        onPageChange: q,
-        page: d,
-        rowsPerPage: b,
-        showFirstButton: F,
-        showLastButton: H,
-        slotProps: I.actions,
-        slots: w.actions,
-        getItemAriaLabel: k,
-        disabled: j
-      })]
-    })
+}
+function u(t, i) {
+  return t.slice(0, i).map((e) => ({
+    title: e.disease_trait,
+    description: `${e.author.replace("_", " ")} (${e.studyid.split("-")[1]})
+${e.parent_terms.join(",")}
+ ${e.has_enrichment_info ? "Biosample Enrichment" : ""}`,
+    domain: void 0,
+    id: e.studyid,
+    type: "Study"
+  }));
+}
+function y(t) {
+  return t.map((i) => ({
+    title: i.label,
+    description: i.description ?? "",
+    domain: void 0,
+    id: i.value,
+    type: "Ome"
+  }));
+}
+function v(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
+    type: "iCRE"
+  });
+}
+function f(t, i) {
+  return n(t, i, {
+    getTitle: (e) => e.accession,
+    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}${e.isiCRE ? ", iCRE" : ""}`,
+    type: "cCRE"
+  });
+}
+function R(t, i) {
+  return t.filter((e) => e.input !== e.v4_match_or_intersecting).slice(0, i).map((e) => {
+    const c = e.input_region, o = e.v4_match_or_intersecting;
+    return {
+      title: e.input,
+      // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon
+      description: `(Registry ${e.input_latest_previous_version})
+${e.input_region}
+${o ? `Intersects v4 cCRE${o.includes(",") ? "s" : ""}: ${o.replace(",", ", ")}` : "No intersecting v4 cCREs"}`,
+      domain: {
+        chromosome: c.split(":")[0],
+        start: parseInt(c.split(":")[1].split("-")[0]),
+        end: parseInt(c.split(":")[1].split("-")[1])
+      },
+      type: "Legacy cCRE"
+    };
   });
-});
-process.env.NODE_ENV !== "production" && (Be.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * The component used for displaying the actions.
-   * Either a string to use a HTML element or a component.
-   * @default TablePaginationActions
-   */
-  ActionsComponent: e.elementType,
-  /**
-   * Props applied to the back arrow [`IconButton`](https://mui.com/material-ui/api/icon-button/) component.
-   *
-   * This prop is an alias for `slotProps.actions.previousButton` and will be overriden by it if both are used.
-   * @deprecated Use `slotProps.actions.previousButton` instead.
-   */
-  backIconButtonProps: e.object,
-  /**
-   * Override or extend the styles applied to the component.
-   */
-  classes: e.object,
-  /**
-   * @ignore
-   */
-  colSpan: e.number,
-  /**
-   * The component used for the root node.
-   * Either a string to use a HTML element or a component.
-   */
-  component: e.elementType,
-  /**
-   * The total number of rows.
-   *
-   * To enable server side pagination for an unknown number of items, provide -1.
-   */
-  count: S.isRequired,
-  /**
-   * If `true`, the component is disabled.
-   * @default false
-   */
-  disabled: e.bool,
-  /**
-   * Accepts a function which returns a string value that provides a user-friendly name for the current page.
-   * This is important for screen reader users.
-   *
-   * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).
-   * @param {string} type The link or button type to format ('first' | 'last' | 'next' | 'previous').
-   * @returns {string}
-   * @default function defaultGetAriaLabel(type) {
-   *   return `Go to ${type} page`;
-   * }
-   */
-  getItemAriaLabel: e.func,
-  /**
-   * Customize the displayed rows label. Invoked with a `{ from, to, count, page }`
-   * object.
-   *
-   * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).
-   * @default function defaultLabelDisplayedRows({ from, to, count }) {
-   *   return `${from}–${to} of ${count !== -1 ? count : `more than ${to}`}`;
-   * }
-   */
-  labelDisplayedRows: e.func,
-  /**
-   * Customize the rows per page label.
-   *
-   * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).
-   * @default 'Rows per page:'
-   */
-  labelRowsPerPage: e.node,
-  /**
-   * Props applied to the next arrow [`IconButton`](https://mui.com/material-ui/api/icon-button/) element.
-   *
-   * This prop is an alias for `slotProps.actions.nextButton` and will be overriden by it if both are used.
-   * @deprecated Use `slotProps.actions.nextButton` instead.
-   */
-  nextIconButtonProps: e.object,
-  /**
-   * Callback fired when the page is changed.
-   *
-   * @param {React.MouseEvent<HTMLButtonElement> | null} event The event source of the callback.
-   * @param {number} page The page selected.
-   */
-  onPageChange: e.func.isRequired,
-  /**
-   * Callback fired when the number of rows per page is changed.
-   *
-   * @param {React.ChangeEvent<HTMLTextAreaElement | HTMLInputElement>} event The event source of the callback.
-   */
-  onRowsPerPageChange: e.func,
-  /**
-   * The zero-based index of the current page.
-   */
-  page: ge(S.isRequired, (t) => {
-    const {
-      count: o,
-      page: a,
-      rowsPerPage: g
-    } = t;
-    if (o === -1)
-      return null;
-    const T = Math.max(0, Math.ceil(o / g) - 1);
-    return a < 0 || a > T ? new Error(`MUI: The page prop of a TablePagination is out of range (0 to ${T}, but page is ${a}).`) : null;
-  }),
-  /**
-   * The number of rows per page.
-   *
-   * Set -1 to display all the rows.
-   */
-  rowsPerPage: S.isRequired,
-  /**
-   * Customizes the options of the rows per page select field. If less than two options are
-   * available, no select field will be displayed.
-   * Use -1 for the value with a custom label to show all the rows.
-   * @default [10, 25, 50, 100]
-   */
-  rowsPerPageOptions: e.arrayOf(e.oneOfType([e.number, e.shape({
-    label: e.string.isRequired,
-    value: e.number.isRequired
-  })]).isRequired),
-  /**
-   * Props applied to the rows per page [`Select`](https://mui.com/material-ui/api/select/) element.
-   *
-   * This prop is an alias for `slotProps.select` and will be overriden by it if both are used.
-   * @deprecated Use `slotProps.select` instead.
-   *
-   * @default {}
-   */
-  SelectProps: e.object,
-  /**
-   * If `true`, show the first-page button.
-   * @default false
-   */
-  showFirstButton: e.bool,
-  /**
-   * If `true`, show the last-page button.
-   * @default false
-   */
-  showLastButton: e.bool,
-  /**
-   * The props used for each slot inside.
-   * @default {}
-   */
-  slotProps: e.shape({
-    actions: e.shape({
-      firstButton: e.object,
-      firstButtonIcon: e.object,
-      lastButton: e.object,
-      lastButtonIcon: e.object,
-      nextButton: e.object,
-      nextButtonIcon: e.object,
-      previousButton: e.object,
-      previousButtonIcon: e.object
-    }),
-    displayedRows: e.oneOfType([e.func, e.object]),
-    menuItem: e.oneOfType([e.func, e.object]),
-    root: e.oneOfType([e.func, e.object]),
-    select: e.object,
-    selectLabel: e.oneOfType([e.func, e.object]),
-    spacer: e.oneOfType([e.func, e.object]),
-    toolbar: e.oneOfType([e.func, e.object])
-  }),
-  /**
-   * The components used for each slot inside.
-   * @default {}
-   */
-  slots: e.shape({
-    actions: e.shape({
-      firstButton: e.elementType,
-      firstButtonIcon: e.elementType,
-      lastButton: e.elementType,
-      lastButtonIcon: e.elementType,
-      nextButton: e.elementType,
-      nextButtonIcon: e.elementType,
-      previousButton: e.elementType,
-      previousButtonIcon: e.elementType
-    }),
-    displayedRows: e.elementType,
-    menuItem: e.elementType,
-    root: e.elementType,
-    select: e.elementType,
-    selectLabel: e.elementType,
-    spacer: e.elementType,
-    toolbar: e.elementType
-  }),
-  /**
-   * The system prop that allows defining system overrides as well as additional CSS styles.
-   */
-  sx: e.oneOfType([e.arrayOf(e.oneOfType([e.func, e.object, e.bool])), e.func, e.object])
-});
+}
+const b = [{
+  label: "Proteomics",
+  value: "proteomics",
+  keywords: ["protein", "mass spec"]
+}, {
+  label: "WGS",
+  value: "WGS",
+  keywords: ["whole genome sequencing", "genome sequencing", "genomics"],
+  description: "Whole Genome Sequencing"
+}, {
+  label: "WGBS",
+  value: "WGBS",
+  keywords: ["whole genome bisulfite sequencing", "epigenomics", "methylation"],
+  description: "Whole Genome Bisulfite Sequencing"
+}, {
+  label: "ATAC",
+  value: "ATAC",
+  keywords: ["chromatin accessibility", "atac-seq"],
+  description: "ATAC-seq"
+}, {
+  label: "RNA",
+  value: "RNA",
+  keywords: ["rna-seq", "transcriptomics", "gene expression"],
+  description: "RNA-seq"
+}, {
+  label: "Metabolomics",
+  value: "metabolomics"
+}, {
+  label: "Lipidomics",
+  value: "lipidomics"
+}, {
+  label: "Metallomics",
+  value: "metallomics"
+}, {
+  label: "Exposomics",
+  value: "exposomics"
+}], m = {
+  GRCh38: {
+    chr1: 248956422,
+    chr2: 242193529,
+    chr3: 198295559,
+    chr4: 190214555,
+    chr5: 181538259,
+    chr6: 170805979,
+    chr7: 159345973,
+    chr8: 145138636,
+    chr9: 138394717,
+    chr10: 133797422,
+    chr11: 135086622,
+    chr12: 133275309,
+    chr13: 114364328,
+    chr14: 107043718,
+    chr15: 101991189,
+    chr16: 90338345,
+    chr17: 83257441,
+    chr18: 80373285,
+    chr19: 58617616,
+    chr20: 64444167,
+    chr21: 46709983,
+    chr22: 50818468,
+    chrX: 156040895,
+    chrx: 156040895,
+    chrY: 57227415,
+    chry: 57227415
+  },
+  mm10: {
+    chr1: 195471971,
+    chr2: 182113224,
+    chr3: 160039680,
+    chr4: 156508116,
+    chr5: 151834684,
+    chr6: 149736546,
+    chr7: 145441459,
+    chr8: 129401213,
+    chr9: 124595110,
+    chr10: 130694993,
+    chr11: 122082543,
+    chr12: 120129022,
+    chr13: 120421639,
+    chr14: 124902244,
+    chr15: 104043685,
+    chr16: 98207768,
+    chr17: 94987271,
+    chr18: 90702639,
+    chr19: 61431566,
+    chrX: 171031299,
+    chrx: 171031299,
+    chrY: 91744698,
+    chry: 91744698
+  }
+};
+function C(t) {
+  const i = t.includes("	"), e = t.includes("-"), c = t.length >= 4 && /^[0-9xyXY]$/.test(t[3]);
+  return (i || e) && t.startsWith("chr") && c;
+}
 export {
-  Be as default
+  b as OmesList,
+  f as ccreResultList,
+  $ as geneResultList,
+  p as getCoordinates,
+  v as icreResultList,
+  C as isDomain,
+  R as legacyCcreResultList,
+  y as omeResultsList,
+  g as snpResultList,
+  u as studyResultList
 };
 //# sourceMappingURL=ui-components.es46.js.map