@weng-lab/ui-components 2.0.0 → 2.0.2

package/dist/ui-components.es199.js

@@ -1,11 +1,297 @@
-import i from "./ui-components.es88.js";
-import n from "./ui-components.es87.js";
-function r(e) {
-  return n("MuiButton", e);
-}
-const a = i("MuiButton", ["root", "text", "textInherit", "textPrimary", "textSecondary", "textSuccess", "textError", "textInfo", "textWarning", "outlined", "outlinedInherit", "outlinedPrimary", "outlinedSecondary", "outlinedSuccess", "outlinedError", "outlinedInfo", "outlinedWarning", "contained", "containedInherit", "containedPrimary", "containedSecondary", "containedSuccess", "containedError", "containedInfo", "containedWarning", "disableElevation", "focusVisible", "disabled", "colorInherit", "colorPrimary", "colorSecondary", "colorSuccess", "colorError", "colorInfo", "colorWarning", "textSizeSmall", "textSizeMedium", "textSizeLarge", "outlinedSizeSmall", "outlinedSizeMedium", "outlinedSizeLarge", "containedSizeSmall", "containedSizeMedium", "containedSizeLarge", "sizeMedium", "sizeSmall", "sizeLarge", "fullWidth", "startIcon", "endIcon", "icon", "iconSizeSmall", "iconSizeMedium", "iconSizeLarge", "loading", "loadingWrapper", "loadingIconPlaceholder", "loadingIndicator", "loadingPositionCenter", "loadingPositionStart", "loadingPositionEnd"]);
+import { sizingTransform as o, maxWidth as s } from "./ui-components.es326.js";
+import { columnGap as i, rowGap as n, gap as m } from "./ui-components.es325.js";
+import { margin as e, padding as t } from "./ui-components.es201.js";
+import { paletteTransform as l } from "./ui-components.es324.js";
+import { borderRadius as y, borderTransform as r } from "./ui-components.es312.js";
+const b = {
+  // borders
+  border: {
+    themeKey: "borders",
+    transform: r
+  },
+  borderTop: {
+    themeKey: "borders",
+    transform: r
+  },
+  borderRight: {
+    themeKey: "borders",
+    transform: r
+  },
+  borderBottom: {
+    themeKey: "borders",
+    transform: r
+  },
+  borderLeft: {
+    themeKey: "borders",
+    transform: r
+  },
+  borderColor: {
+    themeKey: "palette"
+  },
+  borderTopColor: {
+    themeKey: "palette"
+  },
+  borderRightColor: {
+    themeKey: "palette"
+  },
+  borderBottomColor: {
+    themeKey: "palette"
+  },
+  borderLeftColor: {
+    themeKey: "palette"
+  },
+  outline: {
+    themeKey: "borders",
+    transform: r
+  },
+  outlineColor: {
+    themeKey: "palette"
+  },
+  borderRadius: {
+    themeKey: "shape.borderRadius",
+    style: y
+  },
+  // palette
+  color: {
+    themeKey: "palette",
+    transform: l
+  },
+  bgcolor: {
+    themeKey: "palette",
+    cssProperty: "backgroundColor",
+    transform: l
+  },
+  backgroundColor: {
+    themeKey: "palette",
+    transform: l
+  },
+  // spacing
+  p: {
+    style: t
+  },
+  pt: {
+    style: t
+  },
+  pr: {
+    style: t
+  },
+  pb: {
+    style: t
+  },
+  pl: {
+    style: t
+  },
+  px: {
+    style: t
+  },
+  py: {
+    style: t
+  },
+  padding: {
+    style: t
+  },
+  paddingTop: {
+    style: t
+  },
+  paddingRight: {
+    style: t
+  },
+  paddingBottom: {
+    style: t
+  },
+  paddingLeft: {
+    style: t
+  },
+  paddingX: {
+    style: t
+  },
+  paddingY: {
+    style: t
+  },
+  paddingInline: {
+    style: t
+  },
+  paddingInlineStart: {
+    style: t
+  },
+  paddingInlineEnd: {
+    style: t
+  },
+  paddingBlock: {
+    style: t
+  },
+  paddingBlockStart: {
+    style: t
+  },
+  paddingBlockEnd: {
+    style: t
+  },
+  m: {
+    style: e
+  },
+  mt: {
+    style: e
+  },
+  mr: {
+    style: e
+  },
+  mb: {
+    style: e
+  },
+  ml: {
+    style: e
+  },
+  mx: {
+    style: e
+  },
+  my: {
+    style: e
+  },
+  margin: {
+    style: e
+  },
+  marginTop: {
+    style: e
+  },
+  marginRight: {
+    style: e
+  },
+  marginBottom: {
+    style: e
+  },
+  marginLeft: {
+    style: e
+  },
+  marginX: {
+    style: e
+  },
+  marginY: {
+    style: e
+  },
+  marginInline: {
+    style: e
+  },
+  marginInlineStart: {
+    style: e
+  },
+  marginInlineEnd: {
+    style: e
+  },
+  marginBlock: {
+    style: e
+  },
+  marginBlockStart: {
+    style: e
+  },
+  marginBlockEnd: {
+    style: e
+  },
+  // display
+  displayPrint: {
+    cssProperty: !1,
+    transform: (a) => ({
+      "@media print": {
+        display: a
+      }
+    })
+  },
+  display: {},
+  overflow: {},
+  textOverflow: {},
+  visibility: {},
+  whiteSpace: {},
+  // flexbox
+  flexBasis: {},
+  flexDirection: {},
+  flexWrap: {},
+  justifyContent: {},
+  alignItems: {},
+  alignContent: {},
+  order: {},
+  flex: {},
+  flexGrow: {},
+  flexShrink: {},
+  alignSelf: {},
+  justifyItems: {},
+  justifySelf: {},
+  // grid
+  gap: {
+    style: m
+  },
+  rowGap: {
+    style: n
+  },
+  columnGap: {
+    style: i
+  },
+  gridColumn: {},
+  gridRow: {},
+  gridAutoFlow: {},
+  gridAutoColumns: {},
+  gridAutoRows: {},
+  gridTemplateColumns: {},
+  gridTemplateRows: {},
+  gridTemplateAreas: {},
+  gridArea: {},
+  // positions
+  position: {},
+  zIndex: {
+    themeKey: "zIndex"
+  },
+  top: {},
+  right: {},
+  bottom: {},
+  left: {},
+  // shadows
+  boxShadow: {
+    themeKey: "shadows"
+  },
+  // sizing
+  width: {
+    transform: o
+  },
+  maxWidth: {
+    style: s
+  },
+  minWidth: {
+    transform: o
+  },
+  height: {
+    transform: o
+  },
+  maxHeight: {
+    transform: o
+  },
+  minHeight: {
+    transform: o
+  },
+  boxSizing: {},
+  // typography
+  font: {
+    themeKey: "font"
+  },
+  fontFamily: {
+    themeKey: "typography"
+  },
+  fontSize: {
+    themeKey: "typography"
+  },
+  fontStyle: {
+    themeKey: "typography"
+  },
+  fontWeight: {
+    themeKey: "typography"
+  },
+  letterSpacing: {},
+  textTransform: {},
+  lineHeight: {},
+  textAlign: {},
+  typography: {
+    cssProperty: !1,
+    themeKey: "typography"
+  }
+};
 export {
-  a as default,
-  r as getButtonUtilityClass
+  b as default
 };
 //# sourceMappingURL=ui-components.es199.js.map

package/dist/ui-components.es199.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ui-components.es199.js","sources":["../../../node_modules/.pnpm/@mui+system@7.2.0_@emotion+react@11.14.0_@types+react@19.1.8_react@19.1.0__@emotion+sty_7f3319f308133a2adcfe5767030e6962/node_modules/@mui/system/esm/styleFunctionSx/defaultSxConfig.js"],"sourcesContent":["import { padding, margin } from \"../spacing/index.js\";\nimport { borderRadius, borderTransform } from \"../borders/index.js\";\nimport { gap, rowGap, columnGap } from \"../cssGrid/index.js\";\nimport { paletteTransform } from \"../palette/index.js\";\nimport { maxWidth, sizingTransform } from \"../sizing/index.js\";\nconst defaultSxConfig = {\n  // borders\n  border: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  borderTop: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  borderRight: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  borderBottom: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  borderLeft: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  borderColor: {\n    themeKey: 'palette'\n  },\n  borderTopColor: {\n    themeKey: 'palette'\n  },\n  borderRightColor: {\n    themeKey: 'palette'\n  },\n  borderBottomColor: {\n    themeKey: 'palette'\n  },\n  borderLeftColor: {\n    themeKey: 'palette'\n  },\n  outline: {\n    themeKey: 'borders',\n    transform: borderTransform\n  },\n  outlineColor: {\n    themeKey: 'palette'\n  },\n  borderRadius: {\n    themeKey: 'shape.borderRadius',\n    style: borderRadius\n  },\n  // palette\n  color: {\n    themeKey: 'palette',\n    transform: paletteTransform\n  },\n  bgcolor: {\n    themeKey: 'palette',\n    cssProperty: 'backgroundColor',\n    transform: paletteTransform\n  },\n  backgroundColor: {\n    themeKey: 'palette',\n    transform: paletteTransform\n  },\n  // spacing\n  p: {\n    style: padding\n  },\n  pt: {\n    style: padding\n  },\n  pr: {\n    style: padding\n  },\n  pb: {\n    style: padding\n  },\n  pl: {\n    style: padding\n  },\n  px: {\n    style: padding\n  },\n  py: {\n    style: padding\n  },\n  padding: {\n    style: padding\n  },\n  paddingTop: {\n    style: padding\n  },\n  paddingRight: {\n    style: padding\n  },\n  paddingBottom: {\n    style: padding\n  },\n  paddingLeft: {\n    style: padding\n  },\n  paddingX: {\n    style: padding\n  },\n  paddingY: {\n    style: padding\n  },\n  paddingInline: {\n    style: padding\n  },\n  paddingInlineStart: {\n    style: padding\n  },\n  paddingInlineEnd: {\n    style: padding\n  },\n  paddingBlock: {\n    style: padding\n  },\n  paddingBlockStart: {\n    style: padding\n  },\n  paddingBlockEnd: {\n    style: padding\n  },\n  m: {\n    style: margin\n  },\n  mt: {\n    style: margin\n  },\n  mr: {\n    style: margin\n  },\n  mb: {\n    style: margin\n  },\n  ml: {\n    style: margin\n  },\n  mx: {\n    style: margin\n  },\n  my: {\n    style: margin\n  },\n  margin: {\n    style: margin\n  },\n  marginTop: {\n    style: margin\n  },\n  marginRight: {\n    style: margin\n  },\n  marginBottom: {\n    style: margin\n  },\n  marginLeft: {\n    style: margin\n  },\n  marginX: {\n    style: margin\n  },\n  marginY: {\n    style: margin\n  },\n  marginInline: {\n    style: margin\n  },\n  marginInlineStart: {\n    style: margin\n  },\n  marginInlineEnd: {\n    style: margin\n  },\n  marginBlock: {\n    style: margin\n  },\n  marginBlockStart: {\n    style: margin\n  },\n  marginBlockEnd: {\n    style: margin\n  },\n  // display\n  displayPrint: {\n    cssProperty: false,\n    transform: value => ({\n      '@media print': {\n        display: value\n      }\n    })\n  },\n  display: {},\n  overflow: {},\n  textOverflow: {},\n  visibility: {},\n  whiteSpace: {},\n  // flexbox\n  flexBasis: {},\n  flexDirection: {},\n  flexWrap: {},\n  justifyContent: {},\n  alignItems: {},\n  alignContent: {},\n  order: {},\n  flex: {},\n  flexGrow: {},\n  flexShrink: {},\n  alignSelf: {},\n  justifyItems: {},\n  justifySelf: {},\n  // grid\n  gap: {\n    style: gap\n  },\n  rowGap: {\n    style: rowGap\n  },\n  columnGap: {\n    style: columnGap\n  },\n  gridColumn: {},\n  gridRow: {},\n  gridAutoFlow: {},\n  gridAutoColumns: {},\n  gridAutoRows: {},\n  gridTemplateColumns: {},\n  gridTemplateRows: {},\n  gridTemplateAreas: {},\n  gridArea: {},\n  // positions\n  position: {},\n  zIndex: {\n    themeKey: 'zIndex'\n  },\n  top: {},\n  right: {},\n  bottom: {},\n  left: {},\n  // shadows\n  boxShadow: {\n    themeKey: 'shadows'\n  },\n  // sizing\n  width: {\n    transform: sizingTransform\n  },\n  maxWidth: {\n    style: maxWidth\n  },\n  minWidth: {\n    transform: sizingTransform\n  },\n  height: {\n    transform: sizingTransform\n  },\n  maxHeight: {\n    transform: sizingTransform\n  },\n  minHeight: {\n    transform: sizingTransform\n  },\n  boxSizing: {},\n  // typography\n  font: {\n    themeKey: 'font'\n  },\n  fontFamily: {\n    themeKey: 'typography'\n  },\n  fontSize: {\n    themeKey: 'typography'\n  },\n  fontStyle: {\n    themeKey: 'typography'\n  },\n  fontWeight: {\n    themeKey: 'typography'\n  },\n  letterSpacing: {},\n  textTransform: {},\n  lineHeight: {},\n  textAlign: {},\n  typography: {\n    cssProperty: false,\n    themeKey: 'typography'\n  }\n};\nexport default 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package/dist/ui-components.es2.js

@@ -1,10 +1,10 @@
 import { j as r } from "./ui-components.es12.js";
 import h, { useEffect as f } from "react";
-import E from "./ui-components.es25.js";
-import x from "./ui-components.es26.js";
-import M from "./ui-components.es27.js";
-import c from "./ui-components.es28.js";
-import g from "./ui-components.es29.js";
+import E from "./ui-components.es39.js";
+import x from "./ui-components.es22.js";
+import M from "./ui-components.es43.js";
+import c from "./ui-components.es44.js";
+import g from "./ui-components.es45.js";
 function _(n) {
   return `${n}`;
 }

package/dist/ui-components.es20.js

@@ -1,215 +1,9 @@
-function p(t, i) {
-  const e = [];
-  t = t.replace(/,/g, "");
-  let c, o, r;
-  if (t.includes(":") && t.includes("-"))
-    c = t.split(":")[0], o = parseInt(t.split(":")[1].split("-")[0]) || 0, r = parseInt(t.split(":")[1].split("-")[1]) || o + 1e3;
-  else if (t.includes("	")) {
-    const [h, l, d] = t.split("	");
-    c = h, o = parseInt(l), r = parseInt(d);
-  } else
-    return e;
-  const s = c.replace(/chrx$/, "chrX").replace(/chry$/, "chrY"), a = m[i][c];
-  return r > o && a && r <= a && e.push({
-    title: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
-    domain: {
-      chromosome: s,
-      start: o,
-      end: r
-    },
-    description: `${s}:${o.toLocaleString()}-${r.toLocaleString()}`,
-    type: "Coordinate"
-  }), e;
-}
-function n(t, i, e) {
-  return t ? t.slice(0, i).map((c) => ({
-    title: e.getTitle(c),
-    description: e.getDescription(c),
-    domain: {
-      chromosome: c.coordinates.chromosome,
-      start: c.coordinates.start,
-      end: c.coordinates.end
-    },
-    type: e.type
-  })) : [];
-}
-function g(t, i) {
-  return n(t, i, {
-    getTitle: (e) => e.id,
-    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
-    type: "SNP"
-  });
-}
-function $(t, i, e) {
-  return n(t, i, {
-    getTitle: (c) => c.name,
-    getDescription: (c) => {
-      let o = "";
-      return c.versions.forEach((r, s) => o += "V" + r.version + " " + r.id + (s === c.versions.length - 1 ? "" : `
-`)), `${c.description}
-${o}
-${c.coordinates.chromosome}:${c.coordinates.start}-${c.coordinates.end}`;
-    },
-    type: "Gene"
-  });
-}
-function u(t, i) {
-  return t.slice(0, i).map((e) => ({
-    title: e.disease_trait,
-    description: `${e.author.replace("_", " ")} (${e.studyid.split("-")[1]})
-${e.parent_terms.join(",")}
- ${e.has_enrichment_info ? "Biosample Enrichment" : ""}`,
-    domain: void 0,
-    id: e.studyid,
-    type: "Study"
-  }));
-}
-function y(t) {
-  return t.map((i) => ({
-    title: i.label,
-    description: i.description ?? "",
-    domain: void 0,
-    id: i.value,
-    type: "Ome"
-  }));
-}
-function v(t, i) {
-  return n(t, i, {
-    getTitle: (e) => e.accession,
-    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}`,
-    type: "iCRE"
-  });
-}
-function f(t, i) {
-  return n(t, i, {
-    getTitle: (e) => e.accession,
-    getDescription: (e) => `${e.coordinates.chromosome}:${e.coordinates.start}-${e.coordinates.end}${e.isiCRE ? ", iCRE" : ""}`,
-    type: "cCRE"
-  });
-}
-function R(t, i) {
-  return t.filter((e) => e.input !== e.v4_match_or_intersecting).slice(0, i).map((e) => {
-    const c = e.input_region, o = e.v4_match_or_intersecting;
-    return {
-      title: e.input,
-      // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon
-      description: `(Registry ${e.input_latest_previous_version})
-${e.input_region}
-${o ? `Intersects v4 cCRE${o.includes(",") ? "s" : ""}: ${o.replace(",", ", ")}` : "No intersecting v4 cCREs"}`,
-      domain: {
-        chromosome: c.split(":")[0],
-        start: parseInt(c.split(":")[1].split("-")[0]),
-        end: parseInt(c.split(":")[1].split("-")[1])
-      },
-      type: "Legacy cCRE"
-    };
-  });
-}
-const b = [{
-  label: "Proteomics",
-  value: "proteomics",
-  keywords: ["protein", "mass spec"]
-}, {
-  label: "WGS",
-  value: "WGS",
-  keywords: ["whole genome sequencing", "genome sequencing", "genomics"],
-  description: "Whole Genome Sequencing"
-}, {
-  label: "WGBS",
-  value: "WGBS",
-  keywords: ["whole genome bisulfite sequencing", "epigenomics", "methylation"],
-  description: "Whole Genome Bisulfite Sequencing"
-}, {
-  label: "ATAC",
-  value: "ATAC",
-  keywords: ["chromatin accessibility", "atac-seq"],
-  description: "ATAC-seq"
-}, {
-  label: "RNA",
-  value: "RNA",
-  keywords: ["rna-seq", "transcriptomics", "gene expression"],
-  description: "RNA-seq"
-}, {
-  label: "Metabolomics",
-  value: "metabolomics"
-}, {
-  label: "Lipidomics",
-  value: "lipidomics"
-}, {
-  label: "Metallomics",
-  value: "metallomics"
-}, {
-  label: "Exposomics",
-  value: "exposomics"
-}], m = {
-  GRCh38: {
-    chr1: 248956422,
-    chr2: 242193529,
-    chr3: 198295559,
-    chr4: 190214555,
-    chr5: 181538259,
-    chr6: 170805979,
-    chr7: 159345973,
-    chr8: 145138636,
-    chr9: 138394717,
-    chr10: 133797422,
-    chr11: 135086622,
-    chr12: 133275309,
-    chr13: 114364328,
-    chr14: 107043718,
-    chr15: 101991189,
-    chr16: 90338345,
-    chr17: 83257441,
-    chr18: 80373285,
-    chr19: 58617616,
-    chr20: 64444167,
-    chr21: 46709983,
-    chr22: 50818468,
-    chrX: 156040895,
-    chrx: 156040895,
-    chrY: 57227415,
-    chry: 57227415
-  },
-  mm10: {
-    chr1: 195471971,
-    chr2: 182113224,
-    chr3: 160039680,
-    chr4: 156508116,
-    chr5: 151834684,
-    chr6: 149736546,
-    chr7: 145441459,
-    chr8: 129401213,
-    chr9: 124595110,
-    chr10: 130694993,
-    chr11: 122082543,
-    chr12: 120129022,
-    chr13: 120421639,
-    chr14: 124902244,
-    chr15: 104043685,
-    chr16: 98207768,
-    chr17: 94987271,
-    chr18: 90702639,
-    chr19: 61431566,
-    chrX: 171031299,
-    chrx: 171031299,
-    chrY: 91744698,
-    chry: 91744698
-  }
-};
-function C(t) {
-  const i = t.includes("	"), e = t.includes("-"), c = t.length >= 4 && /^[0-9xyXY]$/.test(t[3]);
-  return (i || e) && t.startsWith("chr") && c;
-}
+import { j as o } from "./ui-components.es12.js";
+import r from "./ui-components.es65.js";
+const a = r(/* @__PURE__ */ o.jsx("path", {
+  d: "M6.23 20.23 8 22l10-10L8 2 6.23 3.77 14.46 12z"
+}), "ArrowForwardIos");
 export {
-  b as OmesList,
-  f as ccreResultList,
-  $ as geneResultList,
-  p as getCoordinates,
-  v as icreResultList,
-  C as isDomain,
-  R as legacyCcreResultList,
-  y as omeResultsList,
-  g as snpResultList,
-  u as studyResultList
+  a as default
 };
 //# sourceMappingURL=ui-components.es20.js.map

package/dist/ui-components.es20.js.map

@@ -1 +1 @@
-{"version":3,"file":"ui-components.es20.js","sources":["../src/components/GenomeSearch/utils.ts"],"sourcesContent":["import { CCREResponse, GeneResponse, ICREResponse, LegacyCcreResponse, Result, ResultType, SnpResponse, StudyResponse } from \"./types\";\n\n/**\n * Get the coordinates from a string input.\n * @param input - The input string to search for coordinates\n * @param assembly - The assembly to search for coordinates\n * @returns An array of results with the coordinates\n */\nexport function getCoordinates(input: string, assembly: string): Result[] {\n  const results: Result[] = [];\n  input = input.replace(/,/g, \"\");\n\n  let chromosome: string, start: number, end: number;\n\n  if (input.includes(\":\") && input.includes(\"-\")) {\n    chromosome = input.split(\":\")[0];\n    start = parseInt(input.split(\":\")[1].split(\"-\")[0]) || 0;\n    end = parseInt(input.split(\":\")[1].split(\"-\")[1]) || start + 1000;\n  } else if (input.includes(\"\\t\")) {\n    const [chr, startStr, endStr] = input.split(\"\\t\");\n    chromosome = chr;\n    start = parseInt(startStr);\n    end = parseInt(endStr);\n  } else {\n    return results;\n  }\n\n  // Normalize chromosome name to use capital X and Y\n  const normalizedChromosome = chromosome.replace(/chrx$/, \"chrX\").replace(/chry$/, \"chrY\");\n\n  const chrLength = chromosomeLengths[assembly][chromosome];\n  if (end > start && chrLength && end <= chrLength) {\n    results.push({\n      title: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      domain: {\n        chromosome: normalizedChromosome,\n        start: start,\n        end: end,\n      },\n      description: `${normalizedChromosome}:${start.toLocaleString()}-${end.toLocaleString()}`,\n      type: \"Coordinate\",\n    });\n  }\n\n  return results;\n}\n\n// Common interface for result formatting options\ninterface ResultFormatterOptions<T> {\n  getTitle: (result: T) => string;\n  getDescription: (result: T) => string;\n  type: string;\n}\n\n// Generic formatter function\nfunction formatResults<T extends { coordinates: { chromosome: string; start: number; end: number } }>(\n  results: T[] | null,\n  limit: number,\n  options: ResultFormatterOptions<T>\n): Result[] {\n  if (!results) {\n    return [];\n  }\n  return results.slice(0, limit).map((result) => ({\n    title: options.getTitle(result),\n    description: options.getDescription(result),\n    domain: {\n      chromosome: result.coordinates.chromosome,\n      start: result.coordinates.start,\n      end: result.coordinates.end,\n    },\n    type: options.type as ResultType,\n  }));\n}\n\n// Specific formatters using the generic function\nexport function snpResultList(results: SnpResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.id,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"SNP\",\n  });\n}\n\nexport function geneResultList(results: GeneResponse[], limit: number, showVersions: boolean): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.name,\n    getDescription: (result) => {\n      let idStr = \"\";\n      result.versions.forEach(\n        (x, i) => (idStr += \"V\" + x.version + \" \" + x.id + (i === result.versions.length - 1 ? \"\" : \"\\n\"))\n      );\n      return `${result.description}\\n${idStr}\\n${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`;\n    },\n    type: \"Gene\",\n  });\n}\n\nexport function studyResultList(results: StudyResponse[], limit: number): Result[] {\n  return results.slice(0, limit).map((result) => ({\n    title: result.disease_trait,\n    description: `${result.author.replace(\"_\", \" \")} (${result.studyid.split(\"-\")[1]})\\n${result.parent_terms.join(\",\")}\\n ${result.has_enrichment_info ? \"Biosample Enrichment\" : \"\"}`,\n    domain: undefined,\n    id: result.studyid,\n    type: \"Study\",\n  }));\n}\n\nexport function omeResultsList(results: OmeOption[]): Result[] {\n  return results.map((ome) => ({\n    title: ome.label,\n    description: ome.description ?? \"\",\n    domain: undefined,\n    id: ome.value,\n    type: \"Ome\",\n  }));\n}\n\nexport function icreResultList(results: ICREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${result.coordinates.end}`,\n    type: \"iCRE\",\n  });\n}\n\nexport function ccreResultList(results: CCREResponse[], limit: number): Result[] {\n  return formatResults(results, limit, {\n    getTitle: (result) => result.accession,\n    getDescription: (result) =>\n      `${result.coordinates.chromosome}:${result.coordinates.start}-${\n        result.coordinates.end\n      }${result.isiCRE ? \", iCRE\" : \"\"}`,\n    type: \"cCRE\",\n  });\n}\n\nexport function legacyCcreResultList(results: LegacyCcreResponse[], limit: number): Result[] {\n  return results\n    .filter((result) => result.input !== result.v4_match_or_intersecting) //filter v4 cCREs\n    .slice(0, limit)\n    .map((result) => {\n      const region = result.input_region;\n      const overlapping = result.v4_match_or_intersecting\n      return {\n        title: result.input,\n        // !!! Do not change this format without also modifying SCREEN's /search page. This specific formatting is relied upon\n        description: `(Registry ${result.input_latest_previous_version})\\n${result.input_region}\\n${overlapping ? `Intersects v4 cCRE${overlapping.includes(\",\") ? \"s\" : \"\"}: ${overlapping.replace(\",\", \", \")}` : \"No intersecting v4 cCREs\"}`,\n        domain: {\n          chromosome: region.split(\":\")[0],\n          start: parseInt(region.split(\":\")[1].split(\"-\")[0]),\n          end: parseInt(region.split(\":\")[1].split(\"-\")[1]),\n        },\n        type: \"Legacy cCRE\",\n      };\n    });\n}\n\nexport interface OmeOption {\n  label: string;\n  value: string;\n  keywords?: string[];\n  description?: string;\n}\n//allows the user to search more freely and get the result they are looking for\n//will look at label as well as keywords\nexport const OmesList: OmeOption[] = [\n  {\n    label: \"Proteomics\",\n    value: \"proteomics\",\n    keywords: [\"protein\", \"mass spec\"],\n  },\n  {\n    label: \"WGS\",\n    value: \"WGS\",\n    keywords: [\"whole genome sequencing\", \"genome sequencing\", \"genomics\"],\n    description: \"Whole Genome Sequencing\"\n  },\n  {\n    label: \"WGBS\",\n    value: \"WGBS\",\n    keywords: [\"whole genome bisulfite sequencing\", \"epigenomics\", \"methylation\"],\n    description: \"Whole Genome Bisulfite Sequencing\"\n  },\n  {\n    label: \"ATAC\",\n    value: \"ATAC\",\n    keywords: [\"chromatin accessibility\", \"atac-seq\"],\n    description: \"ATAC-seq\"\n  },\n  {\n    label: \"RNA\",\n    value: \"RNA\",\n    keywords: [\"rna-seq\", \"transcriptomics\", \"gene expression\"],\n    description: \"RNA-seq\"\n  },\n  {\n    label: \"Metabolomics\",\n    value: \"metabolomics\",\n  },\n  {\n    label: \"Lipidomics\",\n    value: \"lipidomics\",\n  },\n  {\n    label: \"Metallomics\",\n    value: \"metallomics\",\n  },\n  {\n    label: \"Exposomics\",\n    value: \"exposomics\",\n  },\n];\n\n// Object to store chromosome lengths for GRCh38 and mm10\nconst chromosomeLengths: { [key: string]: { [key: string]: number } } = {\n  GRCh38: {\n    chr1: 248956422,\n    chr2: 242193529,\n    chr3: 198295559,\n    chr4: 190214555,\n    chr5: 181538259,\n    chr6: 170805979,\n    chr7: 159345973,\n    chr8: 145138636,\n    chr9: 138394717,\n    chr10: 133797422,\n    chr11: 135086622,\n    chr12: 133275309,\n    chr13: 114364328,\n    chr14: 107043718,\n    chr15: 101991189,\n    chr16: 90338345,\n    chr17: 83257441,\n    chr18: 80373285,\n    chr19: 58617616,\n    chr20: 64444167,\n    chr21: 46709983,\n    chr22: 50818468,\n    chrX: 156040895,\n    chrx: 156040895,\n    chrY: 57227415,\n    chry: 57227415,\n  },\n  mm10: {\n    chr1: 195471971,\n    chr2: 182113224,\n    chr3: 160039680,\n    chr4: 156508116,\n    chr5: 151834684,\n    chr6: 149736546,\n    chr7: 145441459,\n    chr8: 129401213,\n    chr9: 124595110,\n    chr10: 130694993,\n    chr11: 122082543,\n    chr12: 120129022,\n    chr13: 120421639,\n    chr14: 124902244,\n    chr15: 104043685,\n    chr16: 98207768,\n    chr17: 94987271,\n    chr18: 90702639,\n    chr19: 61431566,\n    chrX: 171031299,\n    chrx: 171031299,\n    chrY: 91744698,\n    chry: 91744698,\n  },\n};\n\nexport function isDomain(input: string) {\n  const hasTabs = input.includes(\"\\t\");\n  const hasHyphens = input.includes(\"-\");\n  const hasChromosomeNumber = input.length >= 4 && /^[0-9xyXY]$/.test(input[3]);\n  return (hasTabs || hasHyphens) && input.startsWith(\"chr\") && 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