@weng-lab/genomebrowser-ui 0.4.0-beta.2 → 0.4.1

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Files changed (33) hide show
  1. package/dist/TrackSelect/Folders/biosamples/data/{human_with_wgbs.json.d.ts → humans_fixed.json.d.ts} +511 -511
  2. package/dist/TrackSelect/Folders/biosamples/shared/types.d.ts +1 -1
  3. package/dist/TrackSelect/Folders/index.d.ts +2 -0
  4. package/dist/TrackSelect/Folders/psychscreen/data/human.json.d.ts +815 -0
  5. package/dist/TrackSelect/Folders/psychscreen/human.d.ts +1 -0
  6. package/dist/TrackSelect/Folders/psychscreen/shared/PsychscreenGroupingCell.d.ts +2 -0
  7. package/dist/TrackSelect/Folders/psychscreen/shared/columns.d.ts +7 -0
  8. package/dist/TrackSelect/Folders/psychscreen/shared/createFolder.d.ts +9 -0
  9. package/dist/TrackSelect/Folders/psychscreen/shared/toTrack.d.ts +5 -0
  10. package/dist/TrackSelect/Folders/psychscreen/shared/types.d.ts +12 -0
  11. package/dist/TrackSelect/trackContext.d.ts +2 -1
  12. package/dist/TrackSelect/types.d.ts +1 -1
  13. package/dist/genomebrowser-ui.es.js +1408 -1263
  14. package/dist/genomebrowser-ui.es.js.map +1 -1
  15. package/package.json +4 -3
  16. package/src/TrackSelect/DataGrid/DataGridWrapper.tsx +9 -5
  17. package/src/TrackSelect/Folders/biosamples/data/fix-human-collections.mjs +119 -0
  18. package/src/TrackSelect/Folders/biosamples/data/humans_fixed.json +59909 -0
  19. package/src/TrackSelect/Folders/biosamples/human.ts +1 -1
  20. package/src/TrackSelect/Folders/biosamples/shared/columns.tsx +2 -2
  21. package/src/TrackSelect/Folders/biosamples/shared/types.ts +1 -1
  22. package/src/TrackSelect/Folders/index.ts +4 -0
  23. package/src/TrackSelect/Folders/psychscreen/data/human.json +812 -0
  24. package/src/TrackSelect/Folders/psychscreen/human.ts +10 -0
  25. package/src/TrackSelect/Folders/psychscreen/shared/PsychscreenGroupingCell.tsx +78 -0
  26. package/src/TrackSelect/Folders/psychscreen/shared/columns.tsx +52 -0
  27. package/src/TrackSelect/Folders/psychscreen/shared/createFolder.ts +45 -0
  28. package/src/TrackSelect/Folders/psychscreen/shared/toTrack.ts +48 -0
  29. package/src/TrackSelect/Folders/psychscreen/shared/types.ts +14 -0
  30. package/src/TrackSelect/TreeView/CustomTreeItem.tsx +10 -2
  31. package/src/TrackSelect/TreeView/TreeViewWrapper.tsx +4 -1
  32. package/src/TrackSelect/trackContext.ts +2 -0
  33. package/src/TrackSelect/types.ts +1 -1
package/dist/TrackSelect/Folders/psychscreen/data/human.json.d.ts ADDED
@@ -0,0 +1,815 @@
1
+ declare const _default: [
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+ {
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+ "id": "epigenetic/adult-bcres",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Candidate cis-Regulatory Elements",
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+ "title": "Adult candidate brain cis-Regulatory Elements (b-cCREs)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/adult_bCREs.bigBed",
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+ "trackType": "bigbed",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fetal-bcres",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Candidate cis-Regulatory Elements",
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+ "title": "Fetal candidate brain cis-Regulatory Elements (b-cCREs)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/fetal_bCREs.bigBed",
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+ "trackType": "bigbed",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/encode-ccres-all-tissues",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Candidate cis-Regulatory Elements",
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+ "title": "ENCODE cCREs, all tissues",
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+ "url": "gs://gcp.wenglab.org/GRCh38-cCREs.V4.bigBed",
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+ "trackType": "bigbed",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-all-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "all brain regions, aggregated NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/all-NeuN+-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-all-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "all brain regions, aggregated NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/all-NeuN--ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-dlpfc-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "dorsolateral prefrontal cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-dlpfc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "dorsolateral prefrontal cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-fppfc-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "frontopolar prefrontal cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/FPPFC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-fppfc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "frontopolar prefrontal cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/FPPFC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-hipp-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "hippocampus NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/HIPP-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-hipp-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "hippocampus NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/HIPP-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-ins-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "insular cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/INS-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-ins-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "insular cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/INS-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-itc-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "inferior temporal gyrus NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/ITC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-itc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "inferior temporal gyrus NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/ITC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-mdt-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "mediodorsal thalamic nucleus NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/MDT-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-mdt-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "mediodorsal thalamic nucleus NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/MDT-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-mofc-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "medial orbital frontal cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/MOFC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-mofc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "medial orbital frontal cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/MOFC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-na-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "nucleus accumbens NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/NA-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-na-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "nucleus accumbens NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/NA-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-pmc-neun-plus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "premotor cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PMC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-pmc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "premotor cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PMC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-ptm-neun-plus",
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+ "category": "Epigenetic Tracks",
212
+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "putamen NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PTM-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-ptm-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
222
+ "title": "putamen NeuN-",
223
+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PTM-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-pvc-neun-plus",
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+ "category": "Epigenetic Tracks",
230
+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
231
+ "title": "primary visual cortex NeuN+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PVC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
237
+ "id": "epigenetic/fans-pvc-neun-minus",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
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+ "title": "primary visual cortex NeuN-",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/PVC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/fans-vlpfc-neun-plus",
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+ "category": "Epigenetic Tracks",
248
+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
249
+ "title": "ventrolateral prefrontal cortex NeuN+",
250
+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/VLPFC-NeuN+-healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
255
+ "id": "epigenetic/fans-vlpfc-neun-minus",
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+ "category": "Epigenetic Tracks",
257
+ "subcategory": "PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors)",
258
+ "title": "ventrolateral prefrontal cortex NeuN-",
259
+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/VLPFC-NeuN--healthy-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/dlpfc-healthy-donors",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE SCZ/BP/healthy DLPFC ATAC-seq",
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+ "title": "healthy donors",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-mixed-Norm-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/dlpfc-bipolar-donors",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE SCZ/BP/healthy DLPFC ATAC-seq",
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+ "title": "bipolar donors",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-mixed-BD-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/dlpfc-schizophrenia-donors",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "PsychENCODE SCZ/BP/healthy DLPFC ATAC-seq",
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+ "title": "schizophrenia donors",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-mixed-SCZ-ATAC.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c1-child-adult-neuron-l4-rorb",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "child/adult layer 4 neuron, RORβ+",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C1_ChildAdult_Neuron_L4-RORB.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c2-infant-1month-astrocyte",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "infant (1 month old) astrocyte",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C2_Infant-1Month_Astrocyte_Astrocyte.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c3-infant-6month-astrocyte",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "infant (6 month old) astrocyte",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C3_Infant-6Month_Astrocyte_Astrocyte.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c4-child-adult-astrocyte-cluster-1",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "child/adult astrocyte (cluster 1)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C4_ChildAdult_Astrocyte_Astrocyte.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c5-child-adult-astrocyte-cluster-2",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "child/adult astrocyte (cluster 2)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C5_ChildAdult_Astrocyte_Astrocyte.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c6-child-astrocyte-cluster-3",
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+ "category": "Epigenetic Tracks",
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+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "child/adult astrocyte (cluster 3)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C6_Child_Astrocyte_Astrocyte.bigWig",
341
+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c7-infant-10month-astrocyte",
346
+ "category": "Epigenetic Tracks",
347
+ "subcategory": "Single cell ATAC-seq pseudobulk",
348
+ "title": "infant (10 month old) astrocyte",
349
+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C7_Infant-10Month_Astrocyte_Astrocyte.bigWig",
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+ "trackType": "bigwig",
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+ "color": "#9479bc"
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+ },
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+ {
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+ "id": "epigenetic/sc-atac-c8-child-adult-neuron-id2-cluster-1",
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+ "category": "Epigenetic Tracks",
356
+ "subcategory": "Single cell ATAC-seq pseudobulk",
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+ "title": "child/adult neuron, ID2+ (cluster 1)",
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+ "url": "gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/C8_ChildAdult_Neuron_IN-ID2.bigWig",
359
+ "trackType": "bigwig",
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410
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411
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+ "color": "#9479bc"
793
+ },
794
+ {
795
+ "id": "atac-seq-peaks/microglia",
796
+ "category": "ATAC Seq Peaks",
797
+ "subcategory": "ATAC Seq Peaks",
798
+ "title": "Microglia",
799
+ "url": "https://downloads.wenglab.org/Micro.PeakCalls.bb",
800
+ "trackType": "bigbed",
801
+ "color": "#9479bc"
802
+ },
803
+ {
804
+ "id": "atac-seq-peaks/all-celltypes",
805
+ "category": "ATAC Seq Peaks",
806
+ "subcategory": "ATAC Seq Peaks",
807
+ "title": "All CellTypes",
808
+ "url": "https://downloads.wenglab.org/All.celltypes.Union.PeakCalls.bb",
809
+ "trackType": "bigbed",
810
+ "color": "#9479bc"
811
+ }
812
+ ]
813
+ ;
814
+
815
+ export default _default;