@wemush/wols 1.2.0 → 1.3.0

package/dist/cjs/index.d.ts

@@ -0,0 +1,29 @@
+/**
+ * @wemush/wols - Official WOLS TypeScript Library
+ *
+ * WeMush Open Labeling Standard (WOLS) v1.3.0 implementation
+ * for biological specimen labeling and traceability.
+ *
+ * @packageDocumentation
+ * @module @wemush/wols
+ * @version 1.3.0
+ */
+export { WOLS_VERSION, WOLS_CONTEXT } from './types.js';
+export type { Brand, SpecimenId, SpecimenType, GrowthStage, Strain, Specimen, SpecimenInput, SpecimenMeta, CreateSpecimenOptions, ParseResult, ValidationResult, ValidationError, ValidationWarning, ValidationOptions, IdValidationMode, IdValidator, SpecimenRef, QRCodeOptions, EncryptionOptions, DecryptionOptions, EncryptedSpecimen, EncryptedField, EncryptionKdf, RawEncryptionKey, DecryptionFailureReason, DecryptResult, FieldEncryptedSpecimen, FieldEncryptionOptions, } from './types.js';
+export { asSpecimenId, isSpecimenType, isGrowthStage, isStrain, SPECIMEN_TYPES, GROWTH_STAGES, } from './types.js';
+export { registerTypeAlias, resolveTypeAlias, getTypeAliases, resolveTypeAndStage, PRIMORDIA_TYPE_ALIAS, } from './types.js';
+export { WOLS_TO_PLATFORM_MAP, mapToWolsType, mapFromWolsType, registerPlatformType, } from './types.js';
+export { normalizeGeneration, isValidGeneration } from './types.js';
+export type { GenerationFormat } from './types.js';
+export { WolsErrorCode, WolsError, WolsParseError, WolsValidationError, WolsEncryptionError, WolsDecryptionError, } from './errors.js';
+export { createSpecimen, serializeSpecimen, PRIMORDIA_AS_TYPE_WARNING } from './specimen.js';
+export { validateSpecimen } from './validator.js';
+export { parseSpecimen } from './parser.js';
+export { toCompactUrl, parseCompactUrl, parseCompactUrlOrThrow, parseCompactUrlOrNull, SPECIES_CODES, getSpeciesFromCode, getCodeFromSpecies, registerSpeciesCode, } from './compact-url.js';
+export { encryptSpecimen, encryptFields, isEncrypted, isEncryptedSpecimen, isEncryptedField, toEncryptedUrl, decryptSpecimen, decryptPlaintext, decryptField, decryptFields, parseEncryptedUrl, type FieldBinding, base64UrlEncode, base64UrlDecode, derivePassphraseKey, } from './crypto/index.js';
+export { toQRCode, toQRCodeDataURL, toQRCodeSVG, isQRAvailable, isQRAvailableSync, } from './qr/index.js';
+export { isServer, isBrowser, isWebWorker, isDeno, isBun, getRuntimeEnvironment, supportsWebCrypto, supportsNodeCrypto, isCryptoSupported, supportsTextEncoding, supportsURLAPIs, } from './utils/environment.js';
+export type { RuntimeEnvironment } from './utils/environment.js';
+export { compareVersions, isOutdated, isNewer, getCurrentVersion, registerMigration, canMigrate, migrate, getMigrations, clearMigrations, } from './utils/migration.js';
+export type { VersionComparison, MigrationHandler } from './utils/migration.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/cjs/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAKH,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAKxD,YAAY,EAEV,KAAK,EACL,UAAU,EAGV,YAAY,EACZ,WAAW,EACX,MAAM,EACN,QAAQ,EACR,aAAa,EACb,YAAY,EACZ,qBAAqB,EAGrB,WAAW,EACX,gBAAgB,EAChB,eAAe,EACf,iBAAiB,EACjB,iBAAiB,EAGjB,gBAAgB,EAChB,WAAW,EAGX,WAAW,EAGX,aAAa,EAGb,iBAAiB,EACjB,iBAAiB,EACjB,iBAAiB,EACjB,cAAc,EACd,aAAa,EACb,gBAAgB,EAChB,uBAAuB,EACvB,aAAa,EACb,sBAAsB,EACtB,sBAAsB,GACvB,MAAM,YAAY,CAAC;AAKpB,OAAO,EACL,YAAY,EACZ,cAAc,EACd,aAAa,EACb,QAAQ,EACR,cAAc,EACd,aAAa,GACd,MAAM,YAAY,CAAC;AAKpB,OAAO,EACL,iBAAiB,EACjB,gBAAgB,EAChB,cAAc,EACd,mBAAmB,EACnB,oBAAoB,GACrB,MAAM,YAAY,CAAC;AAKpB,OAAO,EACL,oBAAoB,EACpB,aAAa,EACb,eAAe,EACf,oBAAoB,GACrB,MAAM,YAAY,CAAC;AAKpB,OAAO,EAAE,mBAAmB,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AACpE,YAAY,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAKnD,OAAO,EACL,aAAa,EACb,SAAS,EACT,cAAc,EACd,mBAAmB,EACnB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,aAAa,CAAC;AAKrB,OAAO,EAAE,cAAc,EAAE,iBAAiB,EAAE,yBAAyB,EAAE,MAAM,eAAe,CAAC;AAK7F,OAAO,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAKlD,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAK5C,OAAO,EACL,YAAY,EACZ,eAAe,EACf,sBAAsB,EACtB,qBAAqB,EACrB,aAAa,EACb,kBAAkB,EAClB,kBAAkB,EAClB,mBAAmB,GACpB,MAAM,kBAAkB,CAAC;AAK1B,OAAO,EACL,eAAe,EACf,aAAa,EACb,WAAW,EACX,mBAAmB,EACnB,gBAAgB,EAChB,cAAc,EACd,eAAe,EACf,gBAAgB,EAChB,YAAY,EACZ,aAAa,EACb,iBAAiB,EACjB,KAAK,YAAY,EACjB,eAAe,EACf,eAAe,EACf,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAK3B,OAAO,EACL,QAAQ,EACR,eAAe,EACf,WAAW,EACX,aAAa,EACb,iBAAiB,GAClB,MAAM,eAAe,CAAC;AAKvB,OAAO,EACL,QAAQ,EACR,SAAS,EACT,WAAW,EACX,MAAM,EACN,KAAK,EACL,qBAAqB,EACrB,iBAAiB,EACjB,kBAAkB,EAClB,iBAAiB,EACjB,oBAAoB,EACpB,eAAe,GAChB,MAAM,wBAAwB,CAAC;AAChC,YAAY,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAKjE,OAAO,EACL,eAAe,EACf,UAAU,EACV,OAAO,EACP,iBAAiB,EACjB,iBAAiB,EACjB,UAAU,EACV,OAAO,EACP,aAAa,EACb,eAAe,GAChB,MAAM,sBAAsB,CAAC;AAC9B,YAAY,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/cjs/index.js

@@ -2,16 +2,16 @@
 /**
  * @wemush/wols - Official WOLS TypeScript Library
  *
- * WeMush Open Labeling Standard (WOLS) v1.1.0 implementation
+ * WeMush Open Labeling Standard (WOLS) v1.3.0 implementation
  * for biological specimen labeling and traceability.
  *
  * @packageDocumentation
  * @module @wemush/wols
- * @version 1.1.0
+ * @version 1.3.0
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.supportsNodeCrypto = exports.supportsWebCrypto = exports.getRuntimeEnvironment = exports.isBun = exports.isDeno = exports.isWebWorker = exports.isBrowser = exports.isServer = exports.isQRAvailableSync = exports.isQRAvailable = exports.toQRCodeSVG = exports.toQRCodeDataURL = exports.toQRCode = exports.decryptSpecimen = exports.isEncrypted = exports.encryptSpecimen = exports.registerSpeciesCode = exports.getCodeFromSpecies = exports.getSpeciesFromCode = exports.SPECIES_CODES = exports.parseCompactUrlOrNull = exports.parseCompactUrlOrThrow = exports.parseCompactUrl = exports.toCompactUrl = exports.parseSpecimen = exports.validateSpecimen = exports.serializeSpecimen = exports.createSpecimen = exports.WolsEncryptionError = exports.WolsValidationError = exports.WolsParseError = exports.WolsError = exports.WolsErrorCode = exports.isValidGeneration = exports.normalizeGeneration = exports.registerPlatformType = exports.mapFromWolsType = exports.mapToWolsType = exports.WOLS_TO_PLATFORM_MAP = exports.getTypeAliases = exports.resolveTypeAlias = exports.registerTypeAlias = exports.GROWTH_STAGES = exports.SPECIMEN_TYPES = exports.isStrain = exports.isGrowthStage = exports.isSpecimenType = exports.asSpecimenId = exports.WOLS_CONTEXT = exports.WOLS_VERSION = void 0;
-exports.clearMigrations = exports.getMigrations = exports.migrate = exports.canMigrate = exports.registerMigration = exports.getCurrentVersion = exports.isNewer = exports.isOutdated = exports.compareVersions = exports.supportsURLAPIs = exports.supportsTextEncoding = exports.isCryptoSupported = void 0;
+exports.base64UrlEncode = exports.parseEncryptedUrl = exports.decryptFields = exports.decryptField = exports.decryptPlaintext = exports.decryptSpecimen = exports.toEncryptedUrl = exports.isEncryptedField = exports.isEncryptedSpecimen = exports.isEncrypted = exports.encryptFields = exports.encryptSpecimen = exports.registerSpeciesCode = exports.getCodeFromSpecies = exports.getSpeciesFromCode = exports.SPECIES_CODES = exports.parseCompactUrlOrNull = exports.parseCompactUrlOrThrow = exports.parseCompactUrl = exports.toCompactUrl = exports.parseSpecimen = exports.validateSpecimen = exports.PRIMORDIA_AS_TYPE_WARNING = exports.serializeSpecimen = exports.createSpecimen = exports.WolsDecryptionError = exports.WolsEncryptionError = exports.WolsValidationError = exports.WolsParseError = exports.WolsError = exports.WolsErrorCode = exports.isValidGeneration = exports.normalizeGeneration = exports.registerPlatformType = exports.mapFromWolsType = exports.mapToWolsType = exports.WOLS_TO_PLATFORM_MAP = exports.PRIMORDIA_TYPE_ALIAS = exports.resolveTypeAndStage = exports.getTypeAliases = exports.resolveTypeAlias = exports.registerTypeAlias = exports.GROWTH_STAGES = exports.SPECIMEN_TYPES = exports.isStrain = exports.isGrowthStage = exports.isSpecimenType = exports.asSpecimenId = exports.WOLS_CONTEXT = exports.WOLS_VERSION = void 0;
+exports.clearMigrations = exports.getMigrations = exports.migrate = exports.canMigrate = exports.registerMigration = exports.getCurrentVersion = exports.isNewer = exports.isOutdated = exports.compareVersions = exports.supportsURLAPIs = exports.supportsTextEncoding = exports.isCryptoSupported = exports.supportsNodeCrypto = exports.supportsWebCrypto = exports.getRuntimeEnvironment = exports.isBun = exports.isDeno = exports.isWebWorker = exports.isBrowser = exports.isServer = exports.isQRAvailableSync = exports.isQRAvailable = exports.toQRCodeSVG = exports.toQRCodeDataURL = exports.toQRCode = exports.derivePassphraseKey = exports.base64UrlDecode = void 0;
 // =============================================================================
 // Constants
 // =============================================================================
@@ -35,6 +35,8 @@ var types_js_3 = require("./types.js");
 Object.defineProperty(exports, "registerTypeAlias", { enumerable: true, get: function () { return types_js_3.registerTypeAlias; } });
 Object.defineProperty(exports, "resolveTypeAlias", { enumerable: true, get: function () { return types_js_3.resolveTypeAlias; } });
 Object.defineProperty(exports, "getTypeAliases", { enumerable: true, get: function () { return types_js_3.getTypeAliases; } });
+Object.defineProperty(exports, "resolveTypeAndStage", { enumerable: true, get: function () { return types_js_3.resolveTypeAndStage; } });
+Object.defineProperty(exports, "PRIMORDIA_TYPE_ALIAS", { enumerable: true, get: function () { return types_js_3.PRIMORDIA_TYPE_ALIAS; } });
 // =============================================================================
 // Type Mapping System (v1.2.0)
 // =============================================================================
@@ -58,12 +60,14 @@ Object.defineProperty(exports, "WolsError", { enumerable: true, get: function ()
 Object.defineProperty(exports, "WolsParseError", { enumerable: true, get: function () { return errors_js_1.WolsParseError; } });
 Object.defineProperty(exports, "WolsValidationError", { enumerable: true, get: function () { return errors_js_1.WolsValidationError; } });
 Object.defineProperty(exports, "WolsEncryptionError", { enumerable: true, get: function () { return errors_js_1.WolsEncryptionError; } });
+Object.defineProperty(exports, "WolsDecryptionError", { enumerable: true, get: function () { return errors_js_1.WolsDecryptionError; } });
 // =============================================================================
 // Core Functions - Specimen
 // =============================================================================
 var specimen_js_1 = require("./specimen.js");
 Object.defineProperty(exports, "createSpecimen", { enumerable: true, get: function () { return specimen_js_1.createSpecimen; } });
 Object.defineProperty(exports, "serializeSpecimen", { enumerable: true, get: function () { return specimen_js_1.serializeSpecimen; } });
+Object.defineProperty(exports, "PRIMORDIA_AS_TYPE_WARNING", { enumerable: true, get: function () { return specimen_js_1.PRIMORDIA_AS_TYPE_WARNING; } });
 // =============================================================================
 // Core Functions - Validation
 // =============================================================================
@@ -91,8 +95,19 @@ Object.defineProperty(exports, "registerSpeciesCode", { enumerable: true, get: f
 // =============================================================================
 var index_js_1 = require("./crypto/index.js");
 Object.defineProperty(exports, "encryptSpecimen", { enumerable: true, get: function () { return index_js_1.encryptSpecimen; } });
+Object.defineProperty(exports, "encryptFields", { enumerable: true, get: function () { return index_js_1.encryptFields; } });
 Object.defineProperty(exports, "isEncrypted", { enumerable: true, get: function () { return index_js_1.isEncrypted; } });
+Object.defineProperty(exports, "isEncryptedSpecimen", { enumerable: true, get: function () { return index_js_1.isEncryptedSpecimen; } });
+Object.defineProperty(exports, "isEncryptedField", { enumerable: true, get: function () { return index_js_1.isEncryptedField; } });
+Object.defineProperty(exports, "toEncryptedUrl", { enumerable: true, get: function () { return index_js_1.toEncryptedUrl; } });
 Object.defineProperty(exports, "decryptSpecimen", { enumerable: true, get: function () { return index_js_1.decryptSpecimen; } });
+Object.defineProperty(exports, "decryptPlaintext", { enumerable: true, get: function () { return index_js_1.decryptPlaintext; } });
+Object.defineProperty(exports, "decryptField", { enumerable: true, get: function () { return index_js_1.decryptField; } });
+Object.defineProperty(exports, "decryptFields", { enumerable: true, get: function () { return index_js_1.decryptFields; } });
+Object.defineProperty(exports, "parseEncryptedUrl", { enumerable: true, get: function () { return index_js_1.parseEncryptedUrl; } });
+Object.defineProperty(exports, "base64UrlEncode", { enumerable: true, get: function () { return index_js_1.base64UrlEncode; } });
+Object.defineProperty(exports, "base64UrlDecode", { enumerable: true, get: function () { return index_js_1.base64UrlDecode; } });
+Object.defineProperty(exports, "derivePassphraseKey", { enumerable: true, get: function () { return index_js_1.derivePassphraseKey; } });
 // =============================================================================
 // Core Functions - QR Code Generation
 // =============================================================================

package/dist/cjs/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":";AAAA;;;;;;;;;GASG;;;;AAEH,gFAAgF;AAChF,YAAY;AACZ,gFAAgF;AAChF,uCAAwD;AAA/C,wGAAA,YAAY,OAAA;AAAE,wGAAA,YAAY,OAAA;AAiDnC,gFAAgF;AAChF,iBAAiB;AACjB,gFAAgF;AAChF,uCAOoB;AANlB,wGAAA,YAAY,OAAA;AACZ,0GAAA,cAAc,OAAA;AACd,yGAAA,aAAa,OAAA;AACb,oGAAA,QAAQ,OAAA;AACR,0GAAA,cAAc,OAAA;AACd,yGAAA,aAAa,OAAA;AAGf,gFAAgF;AAChF,6BAA6B;AAC7B,gFAAgF;AAChF,uCAMoB;AALlB,6GAAA,iBAAiB,OAAA;AACjB,4GAAA,gBAAgB,OAAA;AAChB,0GAAA,cAAc,OAAA;AACd,+GAAA,mBAAmB,OAAA;AACnB,gHAAA,oBAAoB,OAAA;AAGtB,gFAAgF;AAChF,+BAA+B;AAC/B,gFAAgF;AAChF,uCAKoB;AAJlB,gHAAA,oBAAoB,OAAA;AACpB,yGAAA,aAAa,OAAA;AACb,2GAAA,eAAe,OAAA;AACf,gHAAA,oBAAoB,OAAA;AAGtB,gFAAgF;AAChF,oCAAoC;AACpC,gFAAgF;AAChF,uCAAoE;AAA3D,+GAAA,mBAAmB,OAAA;AAAE,6GAAA,iBAAiB,OAAA;AAG/C,gFAAgF;AAChF,SAAS;AACT,gFAAgF;AAChF,yCAOqB;AANnB,0GAAA,aAAa,OAAA;AACb,sGAAA,SAAS,OAAA;AACT,2GAAA,cAAc,OAAA;AACd,gHAAA,mBAAmB,OAAA;AACnB,gHAAA,mBAAmB,OAAA;AACnB,gHAAA,mBAAmB,OAAA;AAGrB,gFAAgF;AAChF,4BAA4B;AAC5B,gFAAgF;AAChF,6CAA6F;AAApF,6GAAA,cAAc,OAAA;AAAE,gHAAA,iBAAiB,OAAA;AAAE,wHAAA,yBAAyB,OAAA;AAErE,gFAAgF;AAChF,8BAA8B;AAC9B,gFAAgF;AAChF,+CAAkD;AAAzC,gHAAA,gBAAgB,OAAA;AAEzB,gFAAgF;AAChF,0BAA0B;AAC1B,gFAAgF;AAChF,yCAA4C;AAAnC,0GAAA,aAAa,OAAA;AAEtB,gFAAgF;AAChF,+BAA+B;AAC/B,gFAAgF;AAChF,mDAS0B;AARxB,8GAAA,YAAY,OAAA;AACZ,iHAAA,eAAe,OAAA;AACf,wHAAA,sBAAsB,OAAA;AACtB,uHAAA,qBAAqB,OAAA;AACrB,+GAAA,aAAa,OAAA;AACb,oHAAA,kBAAkB,OAAA;AAClB,oHAAA,kBAAkB,OAAA;AAClB,qHAAA,mBAAmB,OAAA;AAGrB,gFAAgF;AAChF,8BAA8B;AAC9B,gFAAgF;AAChF,8CAgB2B;AAfzB,2GAAA,eAAe,OAAA;AACf,yGAAA,aAAa,OAAA;AACb,uGAAA,WAAW,OAAA;AACX,+GAAA,mBAAmB,OAAA;AACnB,4GAAA,gBAAgB,OAAA;AAChB,0GAAA,cAAc,OAAA;AACd,2GAAA,eAAe,OAAA;AACf,4GAAA,gBAAgB,OAAA;AAChB,wGAAA,YAAY,OAAA;AACZ,yGAAA,aAAa,OAAA;AACb,6GAAA,iBAAiB,OAAA;AAEjB,2GAAA,eAAe,OAAA;AACf,2GAAA,eAAe,OAAA;AACf,+GAAA,mBAAmB,OAAA;AAGrB,gFAAgF;AAChF,sCAAsC;AACtC,gFAAgF;AAChF,0CAMuB;AALrB,oGAAA,QAAQ,OAAA;AACR,2GAAA,eAAe,OAAA;AACf,uGAAA,WAAW,OAAA;AACX,yGAAA,aAAa,OAAA;AACb,6GAAA,iBAAiB,OAAA;AAGnB,gFAAgF;AAChF,iCAAiC;AACjC,gFAAgF;AAChF,yDAYgC;AAX9B,0GAAA,QAAQ,OAAA;AACR,2GAAA,SAAS,OAAA;AACT,6GAAA,WAAW,OAAA;AACX,wGAAA,MAAM,OAAA;AACN,uGAAA,KAAK,OAAA;AACL,uHAAA,qBAAqB,OAAA;AACrB,mHAAA,iBAAiB,OAAA;AACjB,oHAAA,kBAAkB,OAAA;AAClB,mHAAA,iBAAiB,OAAA;AACjB,sHAAA,oBAAoB,OAAA;AACpB,iHAAA,eAAe,OAAA;AAIjB,gFAAgF;AAChF,+BAA+B;AAC/B,gFAAgF;AAChF,qDAU8B;AAT5B,+GAAA,eAAe,OAAA;AACf,0GAAA,UAAU,OAAA;AACV,uGAAA,OAAO,OAAA;AACP,iHAAA,iBAAiB,OAAA;AACjB,iHAAA,iBAAiB,OAAA;AACjB,0GAAA,UAAU,OAAA;AACV,uGAAA,OAAO,OAAA;AACP,6GAAA,aAAa,OAAA;AACb,+GAAA,eAAe,OAAA"}

package/dist/cjs/package.json

@@ -0,0 +1,3 @@
+{
+  "type": "commonjs"
+}

package/dist/cjs/parser.d.ts

@@ -0,0 +1,30 @@
+/**
+ * WOLS Specimen Parser
+ *
+ * This module provides parsing functionality for WOLS specimen JSON.
+ *
+ * @module parser
+ */
+import { type ParseResult, type Specimen } from './types.js';
+/**
+ * Parse a JSON string into a validated Specimen object.
+ *
+ * This function performs both JSON parsing and WOLS validation.
+ * If the JSON is invalid or the parsed object doesn't conform to WOLS,
+ * it returns a failure result with a detailed error.
+ *
+ * @param json - The JSON string to parse
+ * @returns ParseResult with either the parsed Specimen or an error
+ *
+ * @example
+ * ```typescript
+ * const result = parseSpecimen('{"@context": "https://wemush.com/wols/v1", ...}');
+ * if (result.success) {
+ *   console.log('Specimen ID:', result.data.id);
+ * } else {
+ *   console.error('Parse error:', result.error.message);
+ * }
+ * ```
+ */
+export declare function parseSpecimen(json: string): ParseResult<Specimen>;
+//# sourceMappingURL=parser.d.ts.map

package/dist/cjs/parser.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"parser.d.ts","sourceRoot":"","sources":["../../src/parser.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAQH,OAAO,EAEL,KAAK,WAAW,EAChB,KAAK,QAAQ,EAKd,MAAM,YAAY,CAAC;AAyCpB;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW,CAAC,QAAQ,CAAC,CAwGjE"}

package/dist/cjs/qr/generate.d.ts

@@ -0,0 +1,62 @@
+/**
+ * QR Code Generation Module
+ *
+ * This module provides QR code generation functionality for WOLS specimens.
+ * Requires the 'qrcode' package as an optional peer dependency.
+ *
+ * @module qr/generate
+ */
+import type { Specimen, QRCodeOptions } from '../types.js';
+/**
+ * Check if QR code generation is available.
+ * Returns true if the qrcode library is installed.
+ */
+export declare function isQRAvailable(): Promise<boolean>;
+/**
+ * Synchronous check if QR code generation is available.
+ * Note: Only accurate after first async call to any QR function.
+ */
+export declare function isQRAvailableSync(): boolean;
+/**
+ * Generate QR code as PNG buffer.
+ *
+ * @param specimen - The specimen to encode
+ * @param options - QR code generation options
+ * @returns PNG buffer containing the QR code
+ *
+ * @example
+ * ```typescript
+ * const buffer = await toQRCode(specimen, { size: 400 });
+ * fs.writeFileSync('specimen-qr.png', buffer);
+ * ```
+ */
+export declare function toQRCode(specimen: Specimen, options?: QRCodeOptions): Promise<Buffer>;
+/**
+ * Generate QR code as data URL (base64 encoded PNG).
+ *
+ * @param specimen - The specimen to encode
+ * @param options - QR code generation options
+ * @returns Data URL string (data:image/png;base64,...)
+ *
+ * @example
+ * ```typescript
+ * const dataUrl = await toQRCodeDataURL(specimen);
+ * // Use in HTML: <img src={dataUrl} />
+ * ```
+ */
+export declare function toQRCodeDataURL(specimen: Specimen, options?: QRCodeOptions): Promise<string>;
+/**
+ * Generate QR code as SVG string.
+ *
+ * @param specimen - The specimen to encode
+ * @param options - QR code generation options
+ * @returns SVG string
+ *
+ * @example
+ * ```typescript
+ * const svg = await toQRCodeSVG(specimen, { color: { dark: '#000', light: '#fff' } });
+ * fs.writeFileSync('specimen-qr.svg', svg);
+ * ```
+ */
+export declare function toQRCodeSVG(specimen: Specimen, options?: QRCodeOptions): Promise<string>;
+//# sourceMappingURL=generate.d.ts.map

package/dist/cjs/qr/generate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../../src/qr/generate.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAIH,OAAO,KAAK,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAwK3D;;;GAGG;AACH,wBAAsB,aAAa,IAAI,OAAO,CAAC,OAAO,CAAC,CAGtD;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,IAAI,OAAO,CAE3C;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,QAAQ,CAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,MAAM,CAAC,CAa/F;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,eAAe,CACnC,QAAQ,EAAE,QAAQ,EAClB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,MAAM,CAAC,CAajB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAsB,WAAW,CAC/B,QAAQ,EAAE,QAAQ,EAClB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,MAAM,CAAC,CAmBjB"}

package/dist/cjs/qr/index.d.ts

@@ -0,0 +1,10 @@
+/**
+ * QR Code Submodule
+ *
+ * This module provides QR code generation functionality for WOLS specimens.
+ *
+ * @packageDocumentation
+ * @module @wemush/wols/qr
+ */
+export { toQRCode, toQRCodeDataURL, toQRCodeSVG, isQRAvailable, isQRAvailableSync, } from './generate.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/cjs/qr/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/qr/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACL,QAAQ,EACR,eAAe,EACf,WAAW,EACX,aAAa,EACb,iBAAiB,GAClB,MAAM,eAAe,CAAC"}

package/dist/cjs/specimen.d.ts

@@ -0,0 +1,96 @@
+/**
+ * Specimen Creation and Serialization
+ *
+ * This module provides functions to create and serialize
+ * WOLS v1.3.0 compliant specimen objects.
+ *
+ * @module specimen
+ */
+import type { CreateSpecimenOptions, Specimen, SpecimenInput } from './types.js';
+/**
+ * Warning code emitted when `PRIMORDIA` is supplied as a specimen type.
+ *
+ * @since 1.3.0
+ */
+export declare const PRIMORDIA_AS_TYPE_WARNING = "PRIMORDIA_AS_TYPE";
+/**
+ * Create a new specimen with auto-generated ID and JSON-LD fields.
+ *
+ * This function creates a fully-formed WOLS v1.3.0 compliant Specimen
+ * with automatic ID generation, version assignment, and JSON-LD context.
+ *
+ * Type aliases resolve case-insensitively. `PRIMORDIA` supplied as a type
+ * resolves to `FRUITING`, sets `stage: 'PRIMORDIA'` when no stage was given
+ * (a supplied stage is never overridden), and emits a warning.
+ *
+ * @param input - Specimen creation parameters
+ * @param options - `onWarning` receives non-fatal warnings (default: console.warn)
+ * @returns Fully-formed Specimen with JSON-LD fields
+ * @throws Error if the type is unknown or `created` is not ISO 8601
+ *
+ * @example
+ * ```typescript
+ * // Minimal specimen
+ * const culture = createSpecimen({
+ *   type: 'CULTURE',
+ *   species: 'Pleurotus ostreatus',
+ * });
+ *
+ * // Full specimen with strain info
+ * const substrate = createSpecimen({
+ *   type: 'SUBSTRATE',
+ *   species: 'Hericium erinaceus',
+ *   strain: {
+ *     name: "Lion's Mane Premium",
+ *     generation: 'F2',
+ *     clonalGeneration: 3,
+ *   },
+ *   stage: 'COLONIZATION',
+ *   batch: 'batch_2025_12_001',
+ *   organization: 'org_mushoh',
+ * });
+ *
+ * // String strain shorthand
+ * const spawn = createSpecimen({
+ *   type: 'SPAWN',
+ *   species: 'Ganoderma lucidum',
+ *   strain: 'Reishi Red',  // Auto-expands to { name: 'Reishi Red' }
+ * });
+ *
+ * // PRIMORDIA as a type (v1.3.0) -> type FRUITING, stage PRIMORDIA, plus a warning
+ * const pinning = createSpecimen(
+ *   { type: 'PRIMORDIA', species: 'Pleurotus ostreatus' },
+ *   { onWarning: w => console.info(w.message) }
+ * );
+ *
+ * // Explicit creation timestamp (v1.3.0)
+ * const dated = createSpecimen({
+ *   type: 'CULTURE',
+ *   species: 'Pleurotus ostreatus',
+ *   created: '2025-12-16T10:30:00Z',
+ * });
+ * ```
+ */
+export declare function createSpecimen(input: SpecimenInput, options?: CreateSpecimenOptions): Specimen;
+/**
+ * Serialize a specimen to JSON-LD string.
+ *
+ * The output is formatted with JSON-LD fields (@context, @type) first,
+ * followed by id, version, and remaining fields. Undefined fields are omitted.
+ *
+ * @param specimen - Specimen to serialize
+ * @returns JSON string suitable for QR encoding
+ *
+ * @example
+ * ```typescript
+ * const specimen = createSpecimen({
+ *   type: 'CULTURE',
+ *   species: 'Pleurotus ostreatus',
+ * });
+ *
+ * const json = serializeSpecimen(specimen);
+ * // Returns: '{"@context":"https://wemush.com/wols/v1","@type":"Specimen",...}'
+ * ```
+ */
+export declare function serializeSpecimen(specimen: Specimen): string;
+//# sourceMappingURL=specimen.d.ts.map

package/dist/cjs/specimen.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"specimen.d.ts","sourceRoot":"","sources":["../../src/specimen.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,qBAAqB,EACrB,QAAQ,EACR,aAAa,EAGd,MAAM,YAAY,CAAC;AAWpB;;;;GAIG;AACH,eAAO,MAAM,yBAAyB,sBAAsB,CAAC;AAkC7D;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAyDG;AACH,wBAAgB,cAAc,CAC5B,KAAK,EAAE,aAAa,EACpB,OAAO,GAAE,qBAA0B,GAClC,QAAQ,CAmFV;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CA4D5D"}

package/dist/cjs/specimen.js

@@ -3,15 +3,31 @@
  * Specimen Creation and Serialization
  *
  * This module provides functions to create and serialize
- * WOLS v1.1.0 compliant specimen objects.
+ * WOLS v1.3.0 compliant specimen objects.
  *
  * @module specimen
  */
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.PRIMORDIA_AS_TYPE_WARNING = void 0;
 exports.createSpecimen = createSpecimen;
 exports.serializeSpecimen = serializeSpecimen;
 const types_js_1 = require("./types.js");
 const cuid_js_1 = require("./utils/cuid.js");
+const iso8601_js_1 = require("./utils/iso8601.js");
+/**
+ * Warning code emitted when `PRIMORDIA` is supplied as a specimen type.
+ *
+ * @since 1.3.0
+ */
+exports.PRIMORDIA_AS_TYPE_WARNING = 'PRIMORDIA_AS_TYPE';
+function primordiaWarning() {
+    return {
+        path: 'type',
+        code: exports.PRIMORDIA_AS_TYPE_WARNING,
+        message: `'PRIMORDIA' is a growth stage, not a specimen type; resolved to type 'FRUITING'`,
+        suggestion: `Use type: 'FRUITING', stage: 'PRIMORDIA'`,
+    };
+}
 /**
  * Expand a strain input to a full Strain object.
  * String inputs are expanded to { name: string }.
@@ -34,11 +50,17 @@ function expandStrain(strain) {
 /**
  * Create a new specimen with auto-generated ID and JSON-LD fields.
  *
- * This function creates a fully-formed WOLS v1.1.0 compliant Specimen
+ * This function creates a fully-formed WOLS v1.3.0 compliant Specimen
  * with automatic ID generation, version assignment, and JSON-LD context.
  *
+ * Type aliases resolve case-insensitively. `PRIMORDIA` supplied as a type
+ * resolves to `FRUITING`, sets `stage: 'PRIMORDIA'` when no stage was given
+ * (a supplied stage is never overridden), and emits a warning.
+ *
  * @param input - Specimen creation parameters
+ * @param options - `onWarning` receives non-fatal warnings (default: console.warn)
  * @returns Fully-formed Specimen with JSON-LD fields
+ * @throws Error if the type is unknown or `created` is not ISO 8601
  *
  * @example
  * ```typescript
@@ -68,33 +90,74 @@ function expandStrain(strain) {
  *   species: 'Ganoderma lucidum',
  *   strain: 'Reishi Red',  // Auto-expands to { name: 'Reishi Red' }
  * });
+ *
+ * // PRIMORDIA as a type (v1.3.0) -> type FRUITING, stage PRIMORDIA, plus a warning
+ * const pinning = createSpecimen(
+ *   { type: 'PRIMORDIA', species: 'Pleurotus ostreatus' },
+ *   { onWarning: w => console.info(w.message) }
+ * );
+ *
+ * // Explicit creation timestamp (v1.3.0)
+ * const dated = createSpecimen({
+ *   type: 'CULTURE',
+ *   species: 'Pleurotus ostreatus',
+ *   created: '2025-12-16T10:30:00Z',
+ * });
  * ```
  */
-function createSpecimen(input) {
+function createSpecimen(input, options = {}) {
     const id = (0, types_js_1.asSpecimenId)((0, cuid_js_1.createSpecimenId)());
     const strain = expandStrain(input.strain);
     // Resolve type alias to canonical WOLS type (e.g., 'LIQUID_CULTURE' -> 'CULTURE')
-    const resolvedType = (0, types_js_1.resolveTypeAlias)(input.type);
-    if (!(0, types_js_1.isSpecimenType)(resolvedType)) {
+    const resolved = (0, types_js_1.resolveTypeAndStage)(input.type, input.stage);
+    if (resolved === null) {
         throw new Error(`Invalid specimen type: '${input.type}'. ` +
             `Must be one of: CULTURE, SPAWN, SUBSTRATE, FRUITING, HARVEST ` +
             `(or a registered alias).`);
     }
+    let created;
+    if (input.created !== undefined) {
+        if (input.created instanceof Date) {
+            if (Number.isNaN(input.created.getTime())) {
+                throw new Error('Invalid created timestamp: Date is invalid. Must be ISO 8601.');
+            }
+            created = input.created.toISOString();
+        }
+        else {
+            created = input.created;
+        }
+        if (typeof created !== 'string' || !(0, iso8601_js_1.isValidISO8601)(created)) {
+            throw new Error(`Invalid created timestamp: '${String(input.created)}'. Must be ISO 8601.`);
+        }
+    }
+    if (resolved.primordia) {
+        const warning = primordiaWarning();
+        if (options.onWarning) {
+            options.onWarning(warning);
+        }
+        else {
+            // eslint-disable-next-line no-console
+            console.warn(`[@wemush/wols] ${warning.message}. ${warning.suggestion ?? ''}`.trim());
+        }
+    }
     // Build specimen with required fields
     const specimen = {
         '@context': types_js_1.WOLS_CONTEXT,
         '@type': 'Specimen',
         id,
         version: types_js_1.WOLS_VERSION,
-        type: resolvedType,
+        type: resolved.type,
         species: input.species,
     };
     // Add optional fields only if defined
     if (strain !== undefined) {
         specimen.strain = strain;
     }
-    if (input.stage !== undefined) {
-        specimen.stage = input.stage;
+    if (resolved.stage !== undefined) {
+        specimen.stage = resolved.stage;
+    }
+    if (created !== undefined) {
+        specimen.created = created;
     }
     if (input.batch !== undefined) {
         specimen.batch = input.batch;
@@ -134,21 +197,31 @@ function createSpecimen(input) {
  * ```
  */
 function serializeSpecimen(specimen) {
+    // WOLS v1.3.0: PRIMORDIA is never emitted as a type. A specimen object built
+    // by hand with type PRIMORDIA gets the same resolution as createSpecimen()
+    // (shared resolveTypeAndStage). Any other type is emitted as given.
+    let type = specimen.type;
+    let stage = specimen.stage;
+    const resolved = (0, types_js_1.resolveTypeAndStage)(type, stage);
+    if (resolved?.primordia) {
+        type = resolved.type;
+        stage = resolved.stage;
+    }
     // Build ordered object with JSON-LD fields first
     const ordered = {
         '@context': specimen['@context'],
         '@type': specimen['@type'],
         id: specimen.id,
         version: specimen.version,
-        type: specimen.type,
+        type,
         species: specimen.species,
     };
     // Add optional fields in order, only if defined
     if (specimen.strain !== undefined) {
         ordered['strain'] = specimen.strain;
     }
-    if (specimen.stage !== undefined) {
-        ordered['stage'] = specimen.stage;
+    if (stage !== undefined) {
+        ordered['stage'] = stage;
     }
     if (specimen.created !== undefined) {
         ordered['created'] = specimen.created;

package/dist/cjs/specimen.js.map

@@ -1 +1 @@
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