@wemush/wols 1.2.0 → 1.3.0

package/dist/esm/crypto/index.js

@@ -1,10 +1,12 @@
 /**
  * WOLS Crypto Module
  *
- * Provides AES-256-GCM encryption and decryption for specimens.
+ * AES-256-GCM encryption and decryption for specimens in the WOLS v1.3.0
+ * encrypted format (`wemush://v1/encrypted/{id}?e=&iv=&kdf=...`).
  *
  * @module crypto
  */
-export { encryptSpecimen, isEncrypted } from './encrypt.js';
-export { decryptSpecimen } from './decrypt.js';
+export { encryptSpecimen, encryptFields, isEncrypted, isEncryptedSpecimen, isEncryptedField, toEncryptedUrl, } from './encrypt.js';
+export { decryptSpecimen, decryptPlaintext, decryptField, decryptFields, parseEncryptedUrl, } from './decrypt.js';
+export { base64UrlEncode, base64UrlDecode, derivePassphraseKey } from './shared.js';
 //# sourceMappingURL=index.js.map

package/dist/esm/crypto/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/crypto/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACL,eAAe,EACf,aAAa,EACb,WAAW,EACX,mBAAmB,EACnB,gBAAgB,EAChB,cAAc,GACf,MAAM,cAAc,CAAC;AACtB,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,YAAY,EACZ,aAAa,EACb,iBAAiB,GAElB,MAAM,cAAc,CAAC;AACtB,OAAO,EAAE,eAAe,EAAE,eAAe,EAAE,mBAAmB,EAAE,MAAM,aAAa,CAAC"}

package/dist/esm/crypto/shared.js

@@ -0,0 +1,222 @@
+/**
+ * Shared primitives for the WOLS encrypted format (v1.3.0).
+ *
+ * Uses only WebCrypto (`globalThis.crypto.subtle`), so it runs unchanged in
+ * Node.js 20+, browsers, Deno, Bun and workers.
+ *
+ * `base64UrlEncode`, `base64UrlDecode` and `derivePassphraseKey` are public
+ * (re-exported from the package root and `@wemush/wols/crypto`); everything
+ * else here is internal to the crypto module.
+ *
+ * @module crypto/shared
+ */
+import { WolsDecryptionError, WolsEncryptionError, WolsErrorCode } from '../errors.js';
+// =============================================================================
+// CONSTANTS
+// =============================================================================
+/** Default PBKDF2 iteration count used when generating. */
+export const DEFAULT_PBKDF2_ITERATIONS = 600_000;
+/** Iteration count pre-1.3.0 payloads used when they recorded none. */
+export const LEGACY_PBKDF2_ITERATIONS = 100_000;
+/** Generators MUST use at least this many PBKDF2 iterations (WOLS v1.3.0). */
+export const MIN_GENERATE_ITERATIONS = 100_000;
+/** Decoders MUST reject fewer PBKDF2 iterations than this (WOLS v1.3.0). */
+export const MIN_DECODE_ITERATIONS = 10_000;
+/** Default largest PBKDF2 iteration count accepted from a label when decoding. */
+export const DEFAULT_MAX_DECODE_ITERATIONS = 10_000_000;
+/**
+ * WOLS 1.3.0 ceiling: decoders reject more than this many iterations (alone,
+ * or in total across a field-encrypted label), and generators never exceed it.
+ * A configured `maxIterations` may be lower, never higher.
+ */
+export const MAX_ITERATIONS = 10_000_000;
+/** WebCrypto's PBKDF2 `iterations` is an unsigned long; nothing above this is derivable. */
+export const MAX_PBKDF2_ITERATIONS = 0xffff_ffff;
+/** Per-label PBKDF2 salt length generated (spec minimum: 16 bytes). */
+export const SALT_LENGTH = 16;
+/** AES-GCM appends a 16-byte authentication tag, so no valid ciphertext is shorter. */
+export const GCM_TAG_LENGTH = 16;
+/** AES-GCM IV length in bytes. */
+export const IV_LENGTH = 12;
+/** Raw AES-256 key length in bytes. */
+export const RAW_KEY_LENGTH = 32;
+/** Prefix of every encrypted-format URL. */
+export const ENCRYPTED_URL_PREFIX = 'wemush://v1/encrypted/';
+/**
+ * Library-wide salt used by pre-1.3.0 releases. Only for decoding legacy
+ * payloads behind `allowLegacy`; never used when generating.
+ */
+export const LEGACY_PBKDF2_SALT = new TextEncoder().encode('@wemush/wols/crypto/v1');
+// =============================================================================
+// ERRORS
+// =============================================================================
+/**
+ * Create a decryption error carrying a stable `details.reason` category.
+ */
+export function decryptionError(reason, message, details = {}) {
+    return new WolsDecryptionError(reason, message, details);
+}
+/**
+ * Whether WebCrypto (`globalThis.crypto.subtle`) is available. It is global in
+ * browsers, workers, Deno, Bun and Node.js 19+ (Node 18 needs
+ * `--experimental-global-webcrypto`).
+ */
+export function hasWebCrypto() {
+    const c = globalThis.crypto;
+    return (typeof c?.subtle === 'object' && c.subtle !== null && typeof c.getRandomValues === 'function');
+}
+/** Message used when WebCrypto is missing. */
+export const NO_WEBCRYPTO_MESSAGE = 'WebCrypto (globalThis.crypto.subtle) is not available in this runtime. ' +
+    'Use Node.js 20+, a modern browser, Deno or Bun.';
+/** Throw a WolsEncryptionError when WebCrypto is missing (encryption paths). */
+export function assertWebCrypto() {
+    if (!hasWebCrypto()) {
+        throw new WolsEncryptionError(WolsErrorCode.ENCRYPTION_ERROR, NO_WEBCRYPTO_MESSAGE);
+    }
+}
+// =============================================================================
+// BASE64URL
+// =============================================================================
+/**
+ * Encode bytes as base64url (RFC 4648 §5) without padding.
+ *
+ * @since 1.3.0
+ */
+export function base64UrlEncode(bytes) {
+    const view = bytes instanceof Uint8Array ? bytes : new Uint8Array(bytes);
+    let binary = '';
+    for (const byte of view) {
+        binary += String.fromCharCode(byte);
+    }
+    return btoa(binary).replace(/\+/g, '-').replace(/\//g, '_').replace(/=+$/, '');
+}
+const BASE64URL_PATTERN = /^[A-Za-z0-9_-]*={0,2}$/;
+/**
+ * Decode base64url (RFC 4648 §5). Padded input is accepted.
+ *
+ * @throws Error if the input is not valid base64url
+ * @since 1.3.0
+ */
+export function base64UrlDecode(value) {
+    if (!BASE64URL_PATTERN.test(value)) {
+        throw new Error('Invalid base64url string');
+    }
+    const unpadded = value.replace(/=+$/, '');
+    if (unpadded.length % 4 === 1) {
+        throw new Error('Invalid base64url length');
+    }
+    const base64 = unpadded.replace(/-/g, '+').replace(/_/g, '/');
+    const binary = atob(base64.padEnd(base64.length + ((4 - (base64.length % 4)) % 4), '='));
+    const bytes = new Uint8Array(binary.length);
+    for (let i = 0; i < binary.length; i++) {
+        bytes[i] = binary.charCodeAt(i);
+    }
+    return bytes;
+}
+// =============================================================================
+// RANDOMNESS
+// =============================================================================
+/** Cryptographically random bytes from WebCrypto. */
+export function randomBytes(length) {
+    const bytes = new Uint8Array(length);
+    crypto.getRandomValues(bytes);
+    return bytes;
+}
+// =============================================================================
+// KEYS
+// =============================================================================
+/** Copy a byte view into a fresh ArrayBuffer-backed Uint8Array (WebCrypto-safe). */
+function toOwnedBytes(bytes) {
+    const view = bytes instanceof Uint8Array ? bytes : new Uint8Array(bytes);
+    const copy = new Uint8Array(view.length);
+    copy.set(view);
+    return copy;
+}
+/**
+ * Derive a 256-bit key from a passphrase with PBKDF2-HMAC-SHA256.
+ *
+ * Exposed for debugging and interoperability testing (it reproduces the
+ * conformance `derive` vectors). Returns the raw key bytes.
+ *
+ * @param passphrase - Passphrase; normalized to Unicode NFC, then UTF-8 encoded (WOLS 1.3.0)
+ * @param salt - Salt bytes (the label's decoded `salt` parameter)
+ * @param iterations - PBKDF2 iteration count (positive integer)
+ * @since 1.3.0
+ */
+export async function derivePassphraseKey(passphrase, salt, iterations) {
+    if (!Number.isInteger(iterations) || iterations < 1 || iterations > MAX_PBKDF2_ITERATIONS) {
+        throw new Error(`PBKDF2 iterations must be an integer from 1 to ${MAX_PBKDF2_ITERATIONS}, got ${iterations}`);
+    }
+    const material = await crypto.subtle.importKey('raw', 
+    // WOLS 1.3.0: NFC so composed and decomposed input derive the same key.
+    new TextEncoder().encode(passphrase.normalize('NFC')), 'PBKDF2', false, ['deriveBits']);
+    const bits = await crypto.subtle.deriveBits({ name: 'PBKDF2', hash: 'SHA-256', salt: toOwnedBytes(salt), iterations }, material, 256);
+    return new Uint8Array(bits);
+}
+/**
+ * Field-level AES-GCM additional data (WOLS 1.3.0): UTF-8 of the label's full
+ * `id`, a line feed, and the top-level field name, e.g. "wemush:clx1a2b3c4\nstrain".
+ * Binds each encrypted value to its label and field.
+ */
+export function fieldAad(id, field) {
+    return new TextEncoder().encode(`${id}\n${field}`);
+}
+/**
+ * Fields that identify or type a label. They are never encrypted, and a label
+ * in which any of them is an encrypted object is refused (WOLS 1.3.0).
+ */
+export const IDENTIFYING_FIELDS = [
+    '@context',
+    '@type',
+    'id',
+    'version',
+    'type',
+    'species',
+];
+/** Import 32 raw key bytes as an AES-GCM key. */
+export async function importAesKey(bytes, usage) {
+    return crypto.subtle.importKey('raw', toOwnedBytes(bytes), { name: 'AES-GCM' }, false, [usage]);
+}
+/**
+ * Check whether a value is a WebCrypto CryptoKey without relying on the
+ * global `CryptoKey` constructor (absent in some runtimes).
+ */
+export function isCryptoKey(value) {
+    return (typeof value === 'object' &&
+        value !== null &&
+        'algorithm' in value &&
+        'usages' in value &&
+        'type' in value &&
+        !(value instanceof Uint8Array) &&
+        !(value instanceof ArrayBuffer));
+}
+/**
+ * Resolve a raw key (bytes or CryptoKey) to an AES-256-GCM CryptoKey.
+ * Returns an error message string when the key is unusable.
+ */
+export async function resolveRawKey(key, usage) {
+    if (isCryptoKey(key)) {
+        const algorithm = key.algorithm;
+        if (algorithm.name !== 'AES-GCM' || algorithm.length !== 256) {
+            return `CryptoKey must be AES-GCM with length 256, got ${algorithm.name ?? 'unknown'}/${algorithm.length ?? '?'}`;
+        }
+        if (!key.usages.includes(usage)) {
+            return `CryptoKey does not allow '${usage}'`;
+        }
+        return key;
+    }
+    const length = key instanceof Uint8Array ? key.length : key.byteLength;
+    if (length !== RAW_KEY_LENGTH) {
+        return `Raw key must be exactly ${RAW_KEY_LENGTH} bytes, got ${length}`;
+    }
+    return importAesKey(key, usage);
+}
+/** Whether a key value is a passphrase (selects kdf=pbkdf2). */
+export function isPassphrase(key) {
+    return typeof key === 'string';
+}
+/** Whether a key value is raw key material (selects kdf=raw). */
+export function isRawKey(key) {
+    return key instanceof Uint8Array || key instanceof ArrayBuffer || isCryptoKey(key);
+}
+//# sourceMappingURL=shared.js.map

package/dist/esm/crypto/shared.js.map

@@ -0,0 +1 @@
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package/dist/esm/errors.js

@@ -128,6 +128,43 @@ export class WolsEncryptionError extends WolsError {
         }
     }
 }
+/**
+ * Decryption failure with a stable, typed {@link DecryptionFailureReason}.
+ *
+ * It extends `WolsEncryptionError` on purpose: 1.2.x returned a
+ * `WolsEncryptionError` for decryption failures, so existing
+ * `instanceof WolsEncryptionError` checks keep matching. Encryption misuse is
+ * thrown as a plain `WolsEncryptionError`; decryption failures are returned as
+ * this subclass, so check `instanceof WolsDecryptionError` to tell them apart.
+ * Malformed encrypted URLs are reported here too (`invalid-url`), not as
+ * `WolsParseError`, so every decryption input problem has one error type.
+ *
+ * Returned (never thrown) by `decryptSpecimen`, `decryptPlaintext`,
+ * `decryptField` and `decryptFields`. `reason` is also copied into
+ * `details.reason` for code that reads the generic error shape.
+ *
+ * @example
+ * ```typescript
+ * const r = await decryptSpecimen(url, { key });
+ * if (!r.success && r.error.reason === 'legacy-format') {
+ *   // a pre-1.3.0 label: retry with { allowLegacy: true } during migration
+ * }
+ * ```
+ *
+ * @since 1.3.0
+ */
+export class WolsDecryptionError extends WolsEncryptionError {
+    /** Stable failure category */
+    reason;
+    constructor(reason, message, details) {
+        super(reason === 'invalid-key' ? WolsErrorCode.INVALID_KEY : WolsErrorCode.DECRYPTION_ERROR, message, { ...details, reason });
+        this.name = 'WolsDecryptionError';
+        this.reason = reason;
+        if (Error.captureStackTrace) {
+            Error.captureStackTrace(this, WolsDecryptionError);
+        }
+    }
+}
 // =============================================================================
 // ERROR FACTORY FUNCTIONS
 // =============================================================================

package/dist/esm/errors.js.map

@@ -1 +1 @@
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package/dist/esm/index.js

@@ -1,12 +1,12 @@
 /**
  * @wemush/wols - Official WOLS TypeScript Library
  *
- * WeMush Open Labeling Standard (WOLS) v1.1.0 implementation
+ * WeMush Open Labeling Standard (WOLS) v1.3.0 implementation
  * for biological specimen labeling and traceability.
  *
  * @packageDocumentation
  * @module @wemush/wols
- * @version 1.1.0
+ * @version 1.3.0
  */
 // =============================================================================
 // Constants
@@ -19,7 +19,7 @@ export { asSpecimenId, isSpecimenType, isGrowthStage, isStrain, SPECIMEN_TYPES,
 // =============================================================================
 // Type Alias System (v1.2.0)
 // =============================================================================
-export { registerTypeAlias, resolveTypeAlias, getTypeAliases } from './types.js';
+export { registerTypeAlias, resolveTypeAlias, getTypeAliases, resolveTypeAndStage, PRIMORDIA_TYPE_ALIAS, } from './types.js';
 // =============================================================================
 // Type Mapping System (v1.2.0)
 // =============================================================================
@@ -31,11 +31,11 @@ export { normalizeGeneration, isValidGeneration } from './types.js';
 // =============================================================================
 // Errors
 // =============================================================================
-export { WolsErrorCode, WolsError, WolsParseError, WolsValidationError, WolsEncryptionError, } from './errors.js';
+export { WolsErrorCode, WolsError, WolsParseError, WolsValidationError, WolsEncryptionError, WolsDecryptionError, } from './errors.js';
 // =============================================================================
 // Core Functions - Specimen
 // =============================================================================
-export { createSpecimen, serializeSpecimen } from './specimen.js';
+export { createSpecimen, serializeSpecimen, PRIMORDIA_AS_TYPE_WARNING } from './specimen.js';
 // =============================================================================
 // Core Functions - Validation
 // =============================================================================
@@ -51,7 +51,7 @@ export { toCompactUrl, parseCompactUrl, parseCompactUrlOrThrow, parseCompactUrlO
 // =============================================================================
 // Core Functions - Encryption
 // =============================================================================
-export { encryptSpecimen, isEncrypted, decryptSpecimen } from './crypto/index.js';
+export { encryptSpecimen, encryptFields, isEncrypted, isEncryptedSpecimen, isEncryptedField, toEncryptedUrl, decryptSpecimen, decryptPlaintext, decryptField, decryptFields, parseEncryptedUrl, base64UrlEncode, base64UrlDecode, derivePassphraseKey, } from './crypto/index.js';
 // =============================================================================
 // Core Functions - QR Code Generation
 // =============================================================================

package/dist/esm/index.js.map

@@ -1 +1 @@
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package/dist/esm/specimen.js

@@ -2,12 +2,27 @@
  * Specimen Creation and Serialization
  *
  * This module provides functions to create and serialize
- * WOLS v1.1.0 compliant specimen objects.
+ * WOLS v1.3.0 compliant specimen objects.
  *
  * @module specimen
  */
-import { WOLS_CONTEXT, WOLS_VERSION, asSpecimenId, isSpecimenType, isStrain, resolveTypeAlias, } from './types.js';
+import { WOLS_CONTEXT, WOLS_VERSION, asSpecimenId, isStrain, resolveTypeAndStage, } from './types.js';
 import { createSpecimenId } from './utils/cuid.js';
+import { isValidISO8601 } from './utils/iso8601.js';
+/**
+ * Warning code emitted when `PRIMORDIA` is supplied as a specimen type.
+ *
+ * @since 1.3.0
+ */
+export const PRIMORDIA_AS_TYPE_WARNING = 'PRIMORDIA_AS_TYPE';
+function primordiaWarning() {
+    return {
+        path: 'type',
+        code: PRIMORDIA_AS_TYPE_WARNING,
+        message: `'PRIMORDIA' is a growth stage, not a specimen type; resolved to type 'FRUITING'`,
+        suggestion: `Use type: 'FRUITING', stage: 'PRIMORDIA'`,
+    };
+}
 /**
  * Expand a strain input to a full Strain object.
  * String inputs are expanded to { name: string }.
@@ -30,11 +45,17 @@ function expandStrain(strain) {
 /**
  * Create a new specimen with auto-generated ID and JSON-LD fields.
  *
- * This function creates a fully-formed WOLS v1.1.0 compliant Specimen
+ * This function creates a fully-formed WOLS v1.3.0 compliant Specimen
  * with automatic ID generation, version assignment, and JSON-LD context.
  *
+ * Type aliases resolve case-insensitively. `PRIMORDIA` supplied as a type
+ * resolves to `FRUITING`, sets `stage: 'PRIMORDIA'` when no stage was given
+ * (a supplied stage is never overridden), and emits a warning.
+ *
  * @param input - Specimen creation parameters
+ * @param options - `onWarning` receives non-fatal warnings (default: console.warn)
  * @returns Fully-formed Specimen with JSON-LD fields
+ * @throws Error if the type is unknown or `created` is not ISO 8601
  *
  * @example
  * ```typescript
@@ -64,33 +85,74 @@ function expandStrain(strain) {
  *   species: 'Ganoderma lucidum',
  *   strain: 'Reishi Red',  // Auto-expands to { name: 'Reishi Red' }
  * });
+ *
+ * // PRIMORDIA as a type (v1.3.0) -> type FRUITING, stage PRIMORDIA, plus a warning
+ * const pinning = createSpecimen(
+ *   { type: 'PRIMORDIA', species: 'Pleurotus ostreatus' },
+ *   { onWarning: w => console.info(w.message) }
+ * );
+ *
+ * // Explicit creation timestamp (v1.3.0)
+ * const dated = createSpecimen({
+ *   type: 'CULTURE',
+ *   species: 'Pleurotus ostreatus',
+ *   created: '2025-12-16T10:30:00Z',
+ * });
  * ```
  */
-export function createSpecimen(input) {
+export function createSpecimen(input, options = {}) {
     const id = asSpecimenId(createSpecimenId());
     const strain = expandStrain(input.strain);
     // Resolve type alias to canonical WOLS type (e.g., 'LIQUID_CULTURE' -> 'CULTURE')
-    const resolvedType = resolveTypeAlias(input.type);
-    if (!isSpecimenType(resolvedType)) {
+    const resolved = resolveTypeAndStage(input.type, input.stage);
+    if (resolved === null) {
         throw new Error(`Invalid specimen type: '${input.type}'. ` +
             `Must be one of: CULTURE, SPAWN, SUBSTRATE, FRUITING, HARVEST ` +
             `(or a registered alias).`);
     }
+    let created;
+    if (input.created !== undefined) {
+        if (input.created instanceof Date) {
+            if (Number.isNaN(input.created.getTime())) {
+                throw new Error('Invalid created timestamp: Date is invalid. Must be ISO 8601.');
+            }
+            created = input.created.toISOString();
+        }
+        else {
+            created = input.created;
+        }
+        if (typeof created !== 'string' || !isValidISO8601(created)) {
+            throw new Error(`Invalid created timestamp: '${String(input.created)}'. Must be ISO 8601.`);
+        }
+    }
+    if (resolved.primordia) {
+        const warning = primordiaWarning();
+        if (options.onWarning) {
+            options.onWarning(warning);
+        }
+        else {
+            // eslint-disable-next-line no-console
+            console.warn(`[@wemush/wols] ${warning.message}. ${warning.suggestion ?? ''}`.trim());
+        }
+    }
     // Build specimen with required fields
     const specimen = {
         '@context': WOLS_CONTEXT,
         '@type': 'Specimen',
         id,
         version: WOLS_VERSION,
-        type: resolvedType,
+        type: resolved.type,
         species: input.species,
     };
     // Add optional fields only if defined
     if (strain !== undefined) {
         specimen.strain = strain;
     }
-    if (input.stage !== undefined) {
-        specimen.stage = input.stage;
+    if (resolved.stage !== undefined) {
+        specimen.stage = resolved.stage;
+    }
+    if (created !== undefined) {
+        specimen.created = created;
     }
     if (input.batch !== undefined) {
         specimen.batch = input.batch;
@@ -130,21 +192,31 @@ export function createSpecimen(input) {
  * ```
  */
 export function serializeSpecimen(specimen) {
+    // WOLS v1.3.0: PRIMORDIA is never emitted as a type. A specimen object built
+    // by hand with type PRIMORDIA gets the same resolution as createSpecimen()
+    // (shared resolveTypeAndStage). Any other type is emitted as given.
+    let type = specimen.type;
+    let stage = specimen.stage;
+    const resolved = resolveTypeAndStage(type, stage);
+    if (resolved?.primordia) {
+        type = resolved.type;
+        stage = resolved.stage;
+    }
     // Build ordered object with JSON-LD fields first
     const ordered = {
         '@context': specimen['@context'],
         '@type': specimen['@type'],
         id: specimen.id,
         version: specimen.version,
-        type: specimen.type,
+        type,
         species: specimen.species,
     };
     // Add optional fields in order, only if defined
     if (specimen.strain !== undefined) {
         ordered['strain'] = specimen.strain;
     }
-    if (specimen.stage !== undefined) {
-        ordered['stage'] = specimen.stage;
+    if (stage !== undefined) {
+        ordered['stage'] = stage;
     }
     if (specimen.created !== undefined) {
         ordered['created'] = specimen.created;

package/dist/esm/specimen.js.map

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