@wemush/wols 0.1.0 → 1.3.0

package/dist/esm/utils/migration.js

@@ -0,0 +1,237 @@
+/**
+ * Version Migration Utilities
+ *
+ * This module provides utilities for comparing WOLS versions and
+ * migrating specimens between versions.
+ *
+ * @module utils/migration
+ * @since 1.2.0
+ */
+import { WOLS_VERSION } from '../types.js';
+// =============================================================================
+// INTERNAL STATE
+// =============================================================================
+/**
+ * Registered migration handlers.
+ */
+const MIGRATION_REGISTRY = [];
+// =============================================================================
+// VERSION UTILITIES
+// =============================================================================
+/**
+ * Parse a semantic version string into components.
+ *
+ * @param version - Semantic version string (e.g., "1.2.0")
+ * @returns Array of [major, minor, patch] or null if invalid
+ */
+function parseVersion(version) {
+    const match = /^(\d+)\.(\d+)\.(\d+)/.exec(version);
+    if (!match)
+        return null;
+    const major = parseInt(match[1], 10);
+    const minor = parseInt(match[2], 10);
+    const patch = parseInt(match[3], 10);
+    return [major, minor, patch];
+}
+/**
+ * Compare two semantic versions.
+ *
+ * @param a - First version string
+ * @param b - Second version string
+ * @returns -1 if a < b, 0 if a === b, 1 if a > b
+ *
+ * @example
+ * ```typescript
+ * compareVersions('1.0.0', '1.1.0') // Returns -1
+ * compareVersions('1.1.0', '1.1.0') // Returns 0
+ * compareVersions('2.0.0', '1.9.0') // Returns 1
+ * ```
+ *
+ * @since 1.2.0
+ */
+export function compareVersions(a, b) {
+    const parsedA = parseVersion(a);
+    const parsedB = parseVersion(b);
+    if (!parsedA || !parsedB) {
+        // Fallback to string comparison for invalid versions
+        if (a < b)
+            return -1;
+        if (a > b)
+            return 1;
+        return 0;
+    }
+    const [majorA, minorA, patchA] = parsedA;
+    const [majorB, minorB, patchB] = parsedB;
+    if (majorA !== majorB)
+        return majorA < majorB ? -1 : 1;
+    if (minorA !== minorB)
+        return minorA < minorB ? -1 : 1;
+    if (patchA !== patchB)
+        return patchA < patchB ? -1 : 1;
+    return 0;
+}
+/**
+ * Check if a specimen is using an outdated WOLS version.
+ *
+ * @param specimen - Specimen object or version string
+ * @returns True if the specimen version is older than current library version
+ *
+ * @example
+ * ```typescript
+ * isOutdated(specimen) // True if specimen.version < WOLS_VERSION
+ * isOutdated('1.0.0')  // True (older than current)
+ * ```
+ *
+ * @since 1.2.0
+ */
+export function isOutdated(specimen) {
+    const version = typeof specimen === 'string' ? specimen : specimen.version;
+    return compareVersions(version, WOLS_VERSION) < 0;
+}
+/**
+ * Check if a specimen is using a newer WOLS version than this library.
+ *
+ * This can happen when specimens are created by a newer library version.
+ *
+ * @param specimen - Specimen object or version string
+ * @returns True if the specimen version is newer than current library version
+ *
+ * @example
+ * ```typescript
+ * isNewer(specimen)  // True if specimen.version > WOLS_VERSION
+ * isNewer('2.0.0')   // True if library is 1.x
+ * ```
+ *
+ * @since 1.2.0
+ */
+export function isNewer(specimen) {
+    const version = typeof specimen === 'string' ? specimen : specimen.version;
+    return compareVersions(version, WOLS_VERSION) > 0;
+}
+/**
+ * Get the current library WOLS version.
+ *
+ * @returns The WOLS version this library implements
+ *
+ * @since 1.2.0
+ */
+export function getCurrentVersion() {
+    return WOLS_VERSION;
+}
+// =============================================================================
+// MIGRATION REGISTRATION
+// =============================================================================
+/**
+ * Register a migration handler for upgrading specimens between versions.
+ *
+ * Migrations are applied in order from oldest to newest when calling `migrate()`.
+ *
+ * @param from - Source version (e.g., "1.0.0")
+ * @param to - Target version (e.g., "1.1.0")
+ * @param handler - Function to transform the specimen
+ *
+ * @example
+ * ```typescript
+ * registerMigration('1.0.0', '1.1.0', (specimen) => {
+ *   // Add new required field with default value
+ *   return { ...specimen, newField: 'default' };
+ * });
+ * ```
+ *
+ * @since 1.2.0
+ */
+export function registerMigration(from, to, handler) {
+    MIGRATION_REGISTRY.push({ from, to, handler });
+    // Keep migrations sorted by source version
+    MIGRATION_REGISTRY.sort((a, b) => compareVersions(a.from, b.from));
+}
+/**
+ * Check if a specimen can be migrated to the current version.
+ *
+ * @param specimen - Specimen to check
+ * @returns True if migration path exists, false otherwise
+ *
+ * @since 1.2.0
+ */
+export function canMigrate(specimen) {
+    if (!isOutdated(specimen)) {
+        return false; // Already current or newer
+    }
+    // Check if we have a migration path
+    let currentVersion = specimen.version;
+    while (compareVersions(currentVersion, WOLS_VERSION) < 0) {
+        const migration = MIGRATION_REGISTRY.find(m => m.from === currentVersion);
+        if (!migration) {
+            return false; // No migration from this version
+        }
+        currentVersion = migration.to;
+    }
+    return true;
+}
+/**
+ * Migrate a specimen to the current WOLS version.
+ *
+ * Applies all registered migrations in order from the specimen's version
+ * to the current library version.
+ *
+ * @param specimen - Specimen to migrate
+ * @returns Migrated specimen with updated version
+ * @throws Error if no migration path exists
+ *
+ * @example
+ * ```typescript
+ * const oldSpecimen = parseSpecimen(oldJson);
+ * if (isOutdated(oldSpecimen)) {
+ *   const updated = migrate(oldSpecimen);
+ *   console.log('Migrated to:', updated.version);
+ * }
+ * ```
+ *
+ * @since 1.2.0
+ */
+export function migrate(specimen) {
+    if (!isOutdated(specimen)) {
+        return specimen; // Already current or newer
+    }
+    let current = specimen;
+    let currentVersion = specimen.version;
+    while (compareVersions(currentVersion, WOLS_VERSION) < 0) {
+        const migration = MIGRATION_REGISTRY.find(m => m.from === currentVersion);
+        if (!migration) {
+            throw new Error(`No migration path from version ${currentVersion} to ${WOLS_VERSION}. ` +
+                `Register a migration using registerMigration().`);
+        }
+        current = migration.handler(current);
+        currentVersion = migration.to;
+    }
+    // Ensure version is updated and consistent with the migration chain
+    if (currentVersion !== WOLS_VERSION) {
+        throw new Error(`Migration ended at version ${currentVersion}, but expected ${WOLS_VERSION}. ` +
+            `Check the registered migrations for incorrect target versions.`);
+    }
+    return {
+        ...current,
+        version: currentVersion,
+    };
+}
+/**
+ * Get all registered migrations.
+ *
+ * @returns Array of migration definitions
+ *
+ * @since 1.2.0
+ */
+export function getMigrations() {
+    return MIGRATION_REGISTRY;
+}
+/**
+ * Clear all registered migrations.
+ *
+ * Primarily useful for testing.
+ *
+ * @since 1.2.0
+ */
+export function clearMigrations() {
+    MIGRATION_REGISTRY.length = 0;
+}
+//# sourceMappingURL=migration.js.map

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package/dist/esm/validator.js

@@ -6,23 +6,32 @@
  * @module validator
  */
 import { WolsErrorCode } from './errors.js';
-import { isGrowthStage, isSpecimenType, WOLS_CONTEXT, } from './types.js';
+import { GROWTH_STAGES, isGrowthStage, isSpecimenType, WOLS_CONTEXT, } from './types.js';
 import { isValidISO8601 } from './utils/iso8601.js';
 // =============================================================================
 // VALIDATION PATTERNS
 // =============================================================================
 /**
- * Pattern for valid specimen ID: wemush:[a-z0-9]+
+ * Pattern for the opt-in 'strict' ID mode (CUID-style): wemush:[a-z0-9]+
  */
-const SPECIMEN_ID_PATTERN = /^wemush:[a-z0-9]+$/;
+const SPECIMEN_ID_PATTERN_STRICT = /^wemush:[a-z0-9]+$/;
+/**
+ * Pattern for valid specimen ID with ULID suffix.
+ * ULID: 26 characters from Crockford's Base32 alphabet (excluding I, L, O, U).
+ */
+const SPECIMEN_ID_PATTERN_ULID = /^wemush:[0-9A-HJKMNP-TV-Z]{26}$/i;
+/**
+ * Pattern for valid specimen ID with UUID v4 suffix.
+ */
+const SPECIMEN_ID_PATTERN_UUID = /^wemush:[0-9a-f]{8}-[0-9a-f]{4}-[1-5][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}$/i;
 /**
  * Pattern for valid semver version: major.minor.patch
  */
 const SEMVER_PATTERN = /^\d+\.\d+\.\d+$/;
 /**
- * Pattern for valid strain generation: P, F1, F2, F3, etc.
+ * Pattern for valid strain generation: P, P1, F1, F2, G1, G2, or numeric (v1.2.0).
  */
-const GENERATION_PATTERN = /^(P|F\d+)$/;
+const GENERATION_PATTERN = /^(P|P\d+|F\d+|G\d+|\d+)$/;
 /**
  * Known WOLS specimen fields (for unknown field detection).
  */
@@ -41,6 +50,7 @@ const KNOWN_FIELDS = new Set([
     'creator',
     'custom',
     'signature',
+    '_meta', // v1.2.0: Implementation metadata namespace
 ]);
 // =============================================================================
 // HELPER FUNCTIONS
@@ -101,9 +111,17 @@ function validateType(value, errors, _options) {
     }
 }
 /**
- * Validate id field.
+ * Validate id field with flexible ID format support.
+ *
+ * WOLS requires implementations to accept any non-empty suffix after
+ * `wemush:`, so that is the default. Format checks are opt-in:
+ * - 'any': wemush:{non-empty-string} (default since v1.3.0)
+ * - 'strict': wemush:[a-z0-9]+ (CUID-style)
+ * - 'ulid': wemush:{ULID}
+ * - 'uuid': wemush:{UUID}
+ * - Custom validator function
  */
-function validateId(value, errors, _options) {
+function validateId(value, errors, options) {
     if (value === undefined || value === null) {
         errors.push(error('id', WolsErrorCode.REQUIRED_FIELD, 'id is required'));
         return;
@@ -112,8 +130,43 @@ function validateId(value, errors, _options) {
         errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, 'id must be a string'));
         return;
     }
-    if (!SPECIMEN_ID_PATTERN.test(value)) {
-        errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id must match pattern 'wemush:[a-z0-9]+', got '${value}'`));
+    // Custom validator takes precedence
+    if (options.customIdValidator) {
+        if (!options.customIdValidator(value)) {
+            errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id failed custom validation: '${value}'`));
+        }
+        return;
+    }
+    // Check wemush: prefix requirement (all modes require this)
+    if (!value.startsWith('wemush:')) {
+        errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id must start with 'wemush:', got '${value}'`));
+        return;
+    }
+    // Get ID mode (default: 'any', as required by WOLS)
+    const mode = options.idMode ?? 'any';
+    switch (mode) {
+        case 'strict':
+            if (!SPECIMEN_ID_PATTERN_STRICT.test(value)) {
+                errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id must match pattern 'wemush:[a-z0-9]+', got '${value}'`));
+            }
+            break;
+        case 'ulid':
+            if (!SPECIMEN_ID_PATTERN_ULID.test(value)) {
+                errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id must be a valid ULID after 'wemush:' prefix, got '${value}'`));
+            }
+            break;
+        case 'uuid':
+            if (!SPECIMEN_ID_PATTERN_UUID.test(value)) {
+                errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id must be a valid UUID after 'wemush:' prefix, got '${value}'`));
+            }
+            break;
+        case 'any':
+            // Just check for non-empty suffix after wemush:
+            if (value.length <= 7) {
+                // 'wemush:'.length = 7
+                errors.push(error('id', WolsErrorCode.INVALID_ID_FORMAT, `id suffix cannot be empty after 'wemush:'`));
+            }
+            break;
     }
 }
 /**
@@ -164,11 +217,12 @@ function validateStage(value, errors, warnings, options) {
         return; // Optional field
     }
     if (!isGrowthStage(value)) {
+        const stages = GROWTH_STAGES.join(', ');
         if (options.level === 'lenient') {
-            warnings.push(warning('stage', 'UNKNOWN_GROWTH_STAGE', `Unknown growth stage '${value}'`, 'Use one of: INOCULATION, COLONIZATION, FRUITING, HARVEST'));
+            warnings.push(warning('stage', 'UNKNOWN_GROWTH_STAGE', `Unknown growth stage '${String(value)}'`, `Use one of: ${stages}`));
         }
         else {
-            errors.push(error('stage', 'INVALID_GROWTH_STAGE', `stage must be one of INOCULATION, COLONIZATION, FRUITING, HARVEST, got '${value}'`));
+            errors.push(error('stage', 'INVALID_GROWTH_STAGE', `stage must be one of ${stages}, got '${String(value)}'`));
         }
     }
 }
@@ -195,7 +249,10 @@ function validateCreated(value, errors, warnings, options) {
 /**
  * Validate strain object.
  */
-function validateStrain(value, errors, _options) {
+function isNonNegativeInteger(value) {
+    return typeof value === 'number' && Number.isInteger(value) && value >= 0;
+}
+function validateStrain(value, errors, warnings, _options) {
     if (value === undefined || value === null) {
         return; // Optional field
     }
@@ -211,15 +268,21 @@ function validateStrain(value, errors, _options) {
     // Validate generation format if present
     if (strain.generation !== undefined) {
         if (typeof strain.generation !== 'string' || !GENERATION_PATTERN.test(strain.generation)) {
-            errors.push(error('strain.generation', WolsErrorCode.INVALID_GENERATION, `strain.generation must match pattern 'P' or 'F<number>', got '${strain.generation}'`));
+            errors.push(error('strain.generation', WolsErrorCode.INVALID_GENERATION, `strain.generation must be P, P<n>, F<n>, G<n> or <n>, got '${String(strain.generation)}'`));
         }
     }
-    // Validate clonalGeneration if present
-    if (strain.clonalGeneration !== undefined) {
-        if (typeof strain.clonalGeneration !== 'number' ||
-            !Number.isInteger(strain.clonalGeneration) ||
-            strain.clonalGeneration < 1) {
-            errors.push(error('strain.clonalGeneration', WolsErrorCode.INVALID_FORMAT, 'strain.clonalGeneration must be a positive integer'));
+    // Validate clonalGeneration if present (0 = original culture)
+    if (strain.clonalGeneration !== undefined && !isNonNegativeInteger(strain.clonalGeneration)) {
+        errors.push(error('strain.clonalGeneration', WolsErrorCode.INVALID_FORMAT, 'strain.clonalGeneration must be a non-negative integer (0 = original culture)'));
+    }
+    // Validate transferDepth if present (v1.3.0; 0 = original culture)
+    if (strain.transferDepth !== undefined) {
+        if (!isNonNegativeInteger(strain.transferDepth)) {
+            errors.push(error('strain.transferDepth', WolsErrorCode.INVALID_FORMAT, `strain.transferDepth must be a non-negative integer, got ${JSON.stringify(strain.transferDepth)}`));
+        }
+        else if (isNonNegativeInteger(strain.clonalGeneration) &&
+            strain.transferDepth < strain.clonalGeneration) {
+            warnings.push(warning('strain.transferDepth', 'TRANSFER_DEPTH_BELOW_CLONAL_GENERATION', `strain.transferDepth (${strain.transferDepth}) is less than strain.clonalGeneration (${strain.clonalGeneration})`, 'transferDepth counts every transfer, including subcultures, so it should be at least clonalGeneration'));
         }
     }
     // Validate source if present (informational, no strict enum)
@@ -248,7 +311,7 @@ function checkUnknownFields(specimen, warnings, options) {
 // MAIN VALIDATION FUNCTION
 // =============================================================================
 /**
- * Validate a specimen object against the WOLS v1.1.0 schema.
+ * Validate a specimen object against the WOLS v1.3.0 schema.
  *
  * @param specimen - The specimen object to validate
  * @param options - Validation options
@@ -265,8 +328,9 @@ function checkUnknownFields(specimen, warnings, options) {
 export function validateSpecimen(specimen, options = {}) {
     const errors = [];
     const warnings = [];
-    // Default options
+    // Default options - spread to include all optional properties
     const opts = {
+        ...options,
         allowUnknownFields: options.allowUnknownFields ?? false,
         level: options.level ?? 'strict',
     };
@@ -292,7 +356,7 @@ export function validateSpecimen(specimen, options = {}) {
     // Validate optional fields
     validateStage(data['stage'], errors, warnings, opts);
     validateCreated(data['created'], errors, warnings, opts);
-    validateStrain(data['strain'], errors, opts);
+    validateStrain(data['strain'], errors, warnings, opts);
     // Check for unknown fields
     checkUnknownFields(data, warnings, opts);
     return {

package/dist/esm/validator.js.map

@@ -1 +1 @@
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package/dist/types/compact-url.d.ts

@@ -101,4 +101,50 @@ export declare function toCompactUrl(specimen: Specimen): string;
  * ```
  */
 export declare function parseCompactUrl(url: string): ParseResult<SpecimenRef>;
+/**
+ * Parse a compact URL, throwing an error on failure.
+ *
+ * This is a convenience wrapper around parseCompactUrl() for cases
+ * where you prefer exceptions over result types.
+ *
+ * @param url - Compact URL to parse (wemush://v1/...)
+ * @returns SpecimenRef on success
+ * @throws WolsParseError on parse failure
+ *
+ * @example
+ * ```typescript
+ * try {
+ *   const ref = parseCompactUrlOrThrow('wemush://v1/clx1a2b3c4?s=POSTR');
+ *   console.log(ref.species); // "Pleurotus ostreatus"
+ * } catch (err) {
+ *   console.error('Failed to parse:', err.message);
+ * }
+ * ```
+ *
+ * @since 1.2.0
+ */
+export declare function parseCompactUrlOrThrow(url: string): SpecimenRef;
+/**
+ * Parse a compact URL, returning null on failure.
+ *
+ * This is a convenience wrapper around parseCompactUrl() for cases
+ * where you want to handle failures with nullish coalescing.
+ *
+ * @param url - Compact URL to parse (wemush://v1/...)
+ * @returns SpecimenRef on success, null on failure
+ *
+ * @example
+ * ```typescript
+ * const ref = parseCompactUrlOrNull('wemush://v1/clx1a2b3c4?s=POSTR');
+ * if (ref !== null) {
+ *   console.log(ref.species);
+ * }
+ *
+ * // Or with nullish coalescing:
+ * const species = parseCompactUrlOrNull(url)?.species ?? 'Unknown';
+ * ```
+ *
+ * @since 1.2.0
+ */
+export declare function parseCompactUrlOrNull(url: string): SpecimenRef | null;
 //# sourceMappingURL=compact-url.d.ts.map

package/dist/types/compact-url.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"compact-url.d.ts","sourceRoot":"","sources":["../../src/compact-url.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAAE,QAAQ,EAA6B,WAAW,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAEhG;;;;GAIG;AACH,eAAO,MAAM,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAWhD,CAAC;AAYF;;;;;;;;;;;GAWG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAEnE;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAEtE;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CASvE;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CAsDvD;AAED;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAC,WAAW,CAAC,CA6GrE"}
+{"version":3,"file":"compact-url.d.ts","sourceRoot":"","sources":["../../src/compact-url.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,KAAK,EAAE,QAAQ,EAA6B,WAAW,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAEhG;;;;GAIG;AACH,eAAO,MAAM,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAWhD,CAAC;AAYF;;;;;;;;;;;GAWG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAEnE;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAEtE;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CASvE;AAED;;;;;;;;;;;;;;;;;;;;;;GAsBG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CAsDvD;AAED;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAAC,WAAW,CAAC,CA6GrE;AAMD;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,sBAAsB,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,CAM/D;AAED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,qBAAqB,CAAC,GAAG,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CAOrE"}