@wazir-dev/cli 1.3.0 → 1.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (133) hide show
  1. package/CHANGELOG.md +17 -2
  2. package/docs/research/2026-03-20-agents/a18fb002157904af5.txt +187 -0
  3. package/docs/research/2026-03-20-agents/a1d0ac79ac2f11e6f.txt +2 -0
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  40. package/docs/research/2026-03-20-agents/bwvl98v2p.txt +738 -0
  41. package/docs/research/2026-03-20-agents/psych-a3697a7fd06eb64fd.txt +135 -0
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  48. package/docs/research/2026-03-20-agents/psych-ab5b302f26a554663.txt +102 -0
  49. package/docs/research/2026-03-20-deep-research-complete.md +101 -0
  50. package/docs/research/2026-03-20-deep-research-status.md +38 -0
  51. package/docs/research/2026-03-20-enforcement-research.md +107 -0
  52. package/expertise/composition-map.yaml +27 -8
  53. package/expertise/digests/reviewer/ai-coding-digest.md +83 -0
  54. package/expertise/digests/reviewer/architectural-thinking-digest.md +63 -0
  55. package/expertise/digests/reviewer/architecture-antipatterns-digest.md +49 -0
  56. package/expertise/digests/reviewer/code-smells-digest.md +53 -0
  57. package/expertise/digests/reviewer/coupling-cohesion-digest.md +54 -0
  58. package/expertise/digests/reviewer/ddd-digest.md +60 -0
  59. package/expertise/digests/reviewer/dependency-risk-digest.md +40 -0
  60. package/expertise/digests/reviewer/error-handling-digest.md +55 -0
  61. package/expertise/digests/reviewer/review-methodology-digest.md +49 -0
  62. package/exports/hosts/claude/.claude/commands/learn.md +61 -8
  63. package/exports/hosts/claude/.claude/settings.json +7 -6
  64. package/exports/hosts/claude/export.manifest.json +6 -3
  65. package/exports/hosts/claude/host-package.json +3 -0
  66. package/exports/hosts/codex/export.manifest.json +6 -3
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  68. package/exports/hosts/cursor/.cursor/hooks.json +6 -6
  69. package/exports/hosts/cursor/export.manifest.json +6 -3
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  71. package/exports/hosts/gemini/export.manifest.json +6 -3
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  73. package/hooks/definitions/pretooluse_dispatcher.yaml +26 -0
  74. package/hooks/definitions/pretooluse_pipeline_guard.yaml +22 -0
  75. package/hooks/definitions/stop_pipeline_gate.yaml +22 -0
  76. package/hooks/hooks.json +7 -6
  77. package/hooks/pretooluse-dispatcher +84 -0
  78. package/hooks/pretooluse-pipeline-guard +9 -0
  79. package/hooks/stop-pipeline-gate +9 -0
  80. package/package.json +2 -2
  81. package/schemas/decision.schema.json +15 -0
  82. package/schemas/hook.schema.json +4 -1
  83. package/skills/TEMPLATE-3-ZONE.md +160 -0
  84. package/skills/brainstorming/SKILL.md +127 -23
  85. package/skills/clarifier/SKILL.md +175 -18
  86. package/skills/claude-cli/SKILL.md +91 -12
  87. package/skills/codex-cli/SKILL.md +91 -12
  88. package/skills/debugging/SKILL.md +133 -38
  89. package/skills/design/SKILL.md +173 -37
  90. package/skills/dispatching-parallel-agents/SKILL.md +129 -31
  91. package/skills/executing-plans/SKILL.md +113 -25
  92. package/skills/executor/SKILL.md +185 -21
  93. package/skills/finishing-a-development-branch/SKILL.md +107 -18
  94. package/skills/gemini-cli/SKILL.md +91 -12
  95. package/skills/humanize/SKILL.md +92 -13
  96. package/skills/init-pipeline/SKILL.md +90 -17
  97. package/skills/prepare-next/SKILL.md +93 -24
  98. package/skills/receiving-code-review/SKILL.md +90 -16
  99. package/skills/requesting-code-review/SKILL.md +100 -24
  100. package/skills/requesting-code-review/code-reviewer.md +29 -17
  101. package/skills/reviewer/SKILL.md +190 -50
  102. package/skills/run-audit/SKILL.md +92 -15
  103. package/skills/scan-project/SKILL.md +93 -14
  104. package/skills/self-audit/SKILL.md +113 -39
  105. package/skills/skill-research/SKILL.md +94 -7
  106. package/skills/subagent-driven-development/SKILL.md +129 -30
  107. package/skills/subagent-driven-development/code-quality-reviewer-prompt.md +30 -2
  108. package/skills/subagent-driven-development/implementer-prompt.md +40 -27
  109. package/skills/subagent-driven-development/spec-reviewer-prompt.md +25 -12
  110. package/skills/tdd/SKILL.md +125 -20
  111. package/skills/using-git-worktrees/SKILL.md +118 -28
  112. package/skills/using-skills/SKILL.md +116 -29
  113. package/skills/verification/SKILL.md +127 -22
  114. package/skills/wazir/SKILL.md +517 -153
  115. package/skills/writing-plans/SKILL.md +134 -28
  116. package/skills/writing-skills/SKILL.md +91 -13
  117. package/skills/writing-skills/anthropic-best-practices.md +104 -64
  118. package/skills/writing-skills/persuasion-principles.md +100 -34
  119. package/tooling/src/capture/command.js +29 -1
  120. package/tooling/src/capture/decision.js +40 -0
  121. package/tooling/src/capture/store.js +1 -0
  122. package/tooling/src/config/depth-table.js +60 -0
  123. package/tooling/src/export/compiler.js +7 -8
  124. package/tooling/src/guards/guardrail-functions.js +131 -0
  125. package/tooling/src/guards/phase-prerequisite-guard.js +39 -3
  126. package/tooling/src/hooks/pretooluse-dispatcher.js +300 -0
  127. package/tooling/src/hooks/pretooluse-pipeline-guard.js +141 -0
  128. package/tooling/src/hooks/stop-pipeline-gate.js +92 -0
  129. package/tooling/src/learn/pipeline.js +177 -0
  130. package/tooling/src/state/db.js +251 -2
  131. package/tooling/src/state/pipeline-state.js +262 -0
  132. package/wazir.manifest.yaml +3 -0
  133. package/workflows/learn.md +61 -8
package/docs/research/2026-03-20-agents/a4984db0b6a8eee07.txt ADDED
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The main worktree is never touched until every check passes.\n 4→\n 5→| Property | Value |\n 6→|---|---|\n 7→| **ID** | `self-audit` |\n 8→| **Type** | Flexible |\n 9→| **Trigger** | `/self-audit` or explicit operator request for a self-audit loop |\n 10→| **Safety guarantee** | Main worktree untouched until all Phase 4 checks pass in isolation |\n 11→\n 12→## Purpose\n 13→\n 14→`self-audit` is `run-audit` with an important difference: it operates on the Wazir project itself, using git worktree isolation to guarantee that fixes are safe before they reach the main working tree. No partial fix state ever lands on main — the worktree is discarded if Phase 4 verification fails.\n 15→\n 16→It also goes beyond a standard audit by running every CLI validation check and performing a deep structural consistency analysis that CLI checks alone cannot catch.\n 17→\n 18→## When to Invoke\n 19→\n 20→- Before a release or major merge.\n 21→- When documentation drift is suspected (roles, workflows, skills out of sync with manifest).\n 22→- After a batch of changes to validate overall project coherence.\n 23→- On a scheduled review cadence.\n 24→- Explicitly: operator invokes `/self-audit`.\n 25→\n 26→## When NOT to Invoke\n 27→\n 28→- You want to audit a non-Wazir codebase — use `run-audit`.\n 29→- You are making a known targeted fix — make the fix directly, then run `wz:verification`.\n 30→\n 31→> [!WARNING]\n 32→> Never run self-audit on the main worktree directly. The skill's safety guarantee depends on worktree isolation. If the isolation step is skipped, fixes may leave the project in a broken intermediate state.\n 33→\n 34→## Worktree Isolation Model\n 35→\n 36→```\n 37→main worktree (untouched throughout)\n 38→ └── agent spawns in isolated git worktree\n 39→ ├── Phase 1: CLI Validation Sweep\n 40→ ├── Phase 2: Deep Structural Audit\n 41→ ├── Phase 3: Fix (auto-fixable issues)\n 42→ ├── Phase 4: Verify (re-run all checks — must be all-green)\n 43→ └── Phase 5: Report + commit in worktree (if green)\n 44→ ↓\n 45→ caller merges back to main (on green)\n 46→```\n 47→\n 48→If Phase 4 fails: worktree is discarded. Main is unchanged.\n 49→\n 50→## Phase 1: CLI Validation Sweep\n 51→\n 52→Runs every validation check and captures pass/fail:\n 53→\n 54→```bash\n 55→node tooling/src/cli.js validate manifest\n 56→node tooling/src/cli.js validate hooks\n 57→node tooling/src/cli.js validate docs\n 58→node tooling/src/cli.js validate brand\n 59→node tooling/src/cli.js validate runtime\n 60→node tooling/src/cli.js validate changelog\n 61→node tooling/src/cli.js validate commits\n 62→node tooling/src/cli.js doctor --json\n 63→node tooling/src/cli.js export --check\n 64→```\n 65→\n 66→Any failure is a finding that goes into the audit report.\n 67→\n 68→## Phase 2: Deep Structural Audit\n 69→\n 70→Six categories of structural checks that CLI validation does not cover:\n 71→\n 72→| Category | What Is Checked |\n 73→|---|---|\n 74→| Cross-reference consistency | Every manifest role/workflow has a corresponding file; every skill dir has `SKILL.md`; composition map concerns reference existing modules |\n 75→| Documentation drift | `docs/architecture.md` component table vs. actual dirs; `docs/roles-and-workflows.md` vs. manifest; README claims vs. actual state |\n 76→| Export freshness | Generated exports match canonical sources via `export --check` |\n 77→| Schema coverage | Every workflow that produces artifacts has a corresponding schema; all schema files are valid JSON |\n 78→| Hook integrity | Hook scripts in `.claude/settings.json` exist and are executable; hook definitions cover all manifest-required hooks |\n 79→| Skill structure | Each `skills/` directory has well-formed `SKILL.md` with frontmatter; referenced skills exist |\n 80→\n 81→## Phase 3: Fix\n 82→\n 83→For each finding:\n 84→\n 85→| Category | Action |\n 86→|---|---|\n 87→| Auto-fixable | Apply fix directly (missing stubs, stale exports, doc drift, permission issues, schema formatting) |\n 88→| Manual-required | Document in audit report with remediation guidance |\n 89→\n 90→Fix constraints:\n 91→- Never modify `input/` (read-only operator surface)\n 92→- Prefer updating docs to match code (code is truth) unless code is clearly wrong\n 93→- Keep fixes minimal — one concern per change\n 94→\n 95→## Phase 4: Verify\n 96→\n 97→Re-runs the entire Phase 1 CLI sweep. **All checks must pass.**\n 98→\n 99→If any check fails after fixes:\n 100→1. Revert the failing fix.\n 101→2. Document the revert and root cause.\n 102→3. Re-verify.\n 103→4. If still failing, mark as manual-required and proceed with remaining passing checks.\n 104→\n 105→## Phase 5: Report and Commit\n 106→\n 107→Produces a structured report:\n 108→\n 109→```markdown\n 110→# Self-Audit Report — Loop N — 2026-03-13\n 111→\n 112→## Validation Sweep\n 113→| Check | Before | After |\n 114→|----------|--------|-------|\n 115→| manifest | FAIL | PASS |\n 116→| hooks | PASS | PASS |\n 117→\n 118→## Auto-Fixed (2)\n 119→- [F-001] skills/scan-project/SKILL.md missing frontmatter — added name/description fields\n 120→- [F-002] docs/architecture.md component count was 8, actual is 9 — updated count\n 121→\n 122→## Manual Required (1)\n 123→- [M-001] schema for `design_review` workflow missing — create schemas/design-review.schema.json\n 124→\n 125→## Verification\n 126→All checks: PASS\n 127→```\n 128→\n 129→On all-green: commits in the worktree with `fix(self-audit): loop N — <summary>`. Caller merges back.\n 130→\n 131→## Loop Behavior\n 132→\n 133→Multiple loops converge to clean:\n 134→\n 135→```\n 136→Loop 1: finds 5 issues, fixes 4, 1 manual → all checks green → commit\n 137→Loop 2: finds 1 issue (introduced by Loop 1), fixes it → all checks green → commit\n 138→Loop 3: finds 0 issues → project is clean\n 139→```\n 140→\n 141→Each loop runs in a fresh worktree, independent of previous loops.\n 142→\n 143→## Example\n 144→\n 145→**Scenario:** Running self-audit before a 0.2.0 release tag.\n 146→\n 147→```\n 148→Operator: /self-audit\n 149→\n 150→Agent: Spawning isolated worktree for self-audit Loop 1...\n 151→Phase 1: Running CLI validation sweep...\n 152→ validate manifest: PASS\n 153→ validate hooks: FAIL — session_start definition missing loop_cap field\n 154→ validate docs: FAIL — skills count in README is 10, actual is 11\n 155→ ...\n 156→\n 157→Phase 2: Deep structural audit...\n 158→ F-003: skills/using-skills referenced in docs/skills.md but directory has wz:using-skills prefix — DRIFT\n 159→ ...\n 160→\n 161→Phase 3: Fixing auto-fixable issues...\n 162→ F-001: Added loop_cap to session_start.yaml\n 163→ F-002: Updated README skill count to 11\n 164→ F-003: Aligned docs/skills.md reference to match actual skill ID\n 165→\n 166→Phase 4: Re-running validation sweep...\n 167→ All checks: PASS\n 168→\n 169→Phase 5: Committed — fix(self-audit): loop 1 — fix hook schema, skill count drift, doc reference alignment\n 170→\n 171→Worktree ready for merge.\n 172→```\n 173→\n 174→## Integration\n 175→\n 176→`self-audit` is the Wazir equivalent of `run-audit` — it is the loop that keeps the OS kit itself coherent. After merge, the resulting commit can be used as a clean baseline for `prepare-next` handoffs.\n 177→"}]},"uuid":"0e5d24d9-f361-400b-a0a9-fbb3f8934af6","timestamp":"2026-03-20T13:34:50.854Z","sourceToolAssistantUUID":"1f8f016e-9384-49cc-b867-86a5892e0711","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"2cda6b0c-8ebe-4bf9-81f9-a59e6127c269","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01CkLBuKsRQt6oCcLaKJyxs8","type":"tool_result","content":" 1→# Self-Audit Checklist\n 2→\n 3→freshness_date: 2026-03-16\n 4→\n 5→A two-pass verification process for text humanization. Run this checklist after producing any text artifact and before handing off to the next phase.\n 6→\n 7→## When to Run\n 8→\n 9→- After any text artifact is produced (spec, plan, code comments, content, review findings)\n 10→- Before handoff to the next pipeline phase\n 11→- When the `wz:humanize` skill is invoked on existing text\n 12→- During the review phase, as part of writing quality assessment\n 13→\n 14→## Pass 1: Pattern Detection\n 15→\n 16→Scan the text for AI patterns. 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This pass protects content.\n 49→\n 50→### 2.1 Re-read every rewritten sentence\n 51→- [ ] Read each changed sentence in context (not in isolation)\n 52→- [ ] Confirm the rewritten version conveys the same information\n 53→\n 54→### 2.2 Check technical precision\n 55→- [ ] Verify no specific names, numbers, versions, or commands were lost\n 56→- [ ] Verify acceptance criteria remain testable (for specs)\n 57→- [ ] Verify task descriptions remain actionable (for plans)\n 58→- [ ] Verify code references remain accurate (for review findings)\n 59→\n 60→### 2.3 Check domain-appropriate tone\n 61→- [ ] Confirm the tone matches the domain rules file for this artifact type\n 62→- [ ] Technical docs: precise and imperative\n 63→- [ ] Code artifacts: brief and factual\n 64→- [ ] User-facing content: conversational and clear\n 65→\n 66→### 2.4 Check format preservation\n 67→- [ ] Verify YAML frontmatter, JSON, and structured formats are untouched\n 68→- [ ] Verify conventional commit prefixes are untouched\n 69→- [ ] Verify code blocks and inline code are untouched\n 70→- [ ] Verify Markdown structure (headings, links, tables) is intact\n 71→\n 72→## Severity Guide\n 73→\n 74→When multiple issues are found, prioritize fixes in this order:\n 75→\n 76→1. **High severity** -- blacklisted vocabulary clusters, introduction/conclusion boilerplate, promotional language, generic superlatives. Fix these first.\n 77→2. **Medium severity** -- copula avoidance, em dash overuse, synonym cycling, excessive hedging, banned openers. Fix these second.\n 78→3. **Low severity** -- rule of three, negative parallelisms, boldface overuse, title case, curly quotes. Fix these if time permits.\n 79→4. **Burstiness** -- adjust sentence lengths last, after vocabulary and structural fixes are in place. Vocabulary and structure changes often improve burstiness as a side effect.\n 80→\n 81→## Exit Criteria\n 82→\n 83→The audit is complete when:\n 84→- All high-severity findings are resolved\n 85→- Medium-severity findings are resolved or documented as acceptable\n 86→- No meaning was lost in rewrites (Pass 2 confirms)\n 87→- Structured formats are intact (Pass 2.4 confirms)\n 88→"}]},"uuid":"cde2179d-fc02-4368-a7a5-a9e4ecaee70c","timestamp":"2026-03-20T13:34:51.985Z","sourceToolAssistantUUID":"2cda6b0c-8ebe-4bf9-81f9-a59e6127c269","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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'',\n 105→ record.scope_stacks ?? '',\n 106→ record.scope_concerns ?? '',\n 107→ record.confidence ?? 'medium',\n 108→ record.content,\n 109→ createdAt,\n 110→ );\n 111→\n 112→ return id;\n 113→}\n 114→\n 115→export function getLearningsByScope(db, filters = {}) {\n 116→ const conditions = [];\n 117→ const params = [];\n 118→\n 119→ if (filters.roles) {\n 120→ conditions.push(\"scope_roles LIKE ?\");\n 121→ params.push(`%${filters.roles}%`);\n 122→ }\n 123→\n 124→ if (filters.stacks) {\n 125→ conditions.push(\"scope_stacks LIKE ?\");\n 126→ params.push(`%${filters.stacks}%`);\n 127→ }\n 128→\n 129→ if (filters.concerns) {\n 130→ conditions.push(\"scope_concerns LIKE ?\");\n 131→ params.push(`%${filters.concerns}%`);\n 132→ }\n 133→\n 134→ if (filters.confidence) {\n 135→ conditions.push(\"confidence = ?\");\n 136→ params.push(filters.confidence);\n 137→ }\n 138→\n 139→ const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n 140→ const limit = filters.limit ? `LIMIT ${Number(filters.limit)}` : '';\n 141→\n 142→ return db.prepare(`\n 143→ SELECT * FROM learnings ${where} ORDER BY created_at DESC ${limit}\n 144→ `).all(...params);\n 145→}\n 146→\n 147→export function updateLearningRecurrence(db, id) {\n 148→ const now = new Date().toISOString();\n 149→\n 150→ db.prepare(`\n 151→ UPDATE learnings\n 152→ SET recurrence_count = recurrence_count + 1,\n 153→ last_applied = ?\n 154→ WHERE id = ?\n 155→ `).run(now, id);\n 156→}\n 157→\n 158→export function getRecurringLearnings(db, minCount) {\n 159→ return db.prepare(`\n 160→ SELECT * FROM learnings\n 161→ WHERE recurrence_count >= ?\n 162→ ORDER BY recurrence_count DESC\n 163→ `).all(minCount);\n 164→}\n 165→\n 166→// ---------------------------------------------------------------------------\n 167→// Findings CRUD\n 168→// ---------------------------------------------------------------------------\n 169→\n 170→export function insertFinding(db, record) {\n 171→ const id = crypto.randomUUID();\n 172→ const findingHash = record.finding_hash ?? hashDescription(record.description);\n 173→ const createdAt = new Date().toISOString();\n 174→\n 175→ db.prepare(`\n 176→ INSERT INTO findings (id, run_id, phase, source, severity, description, finding_hash, created_at)\n 177→ VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n 178→ `).run(\n 179→ id,\n 180→ record.run_id,\n 181→ record.phase,\n 182→ record.source,\n 183→ record.severity,\n 184→ record.description,\n 185→ findingHash,\n 186→ createdAt,\n 187→ );\n 188→\n 189→ return id;\n 190→}\n 191→\n 192→export function getFindingsByRun(db, runId) {\n 193→ return db.prepare(`\n 194→ SELECT * FROM findings\n 195→ WHERE run_id = ?\n 196→ ORDER BY created_at ASC\n 197→ `).all(runId);\n 198→}\n 199→\n 200→export function getRecurringFindingHashes(db, minOccurrences) {\n 201→ return db.prepare(`\n 202→ SELECT finding_hash, COUNT(*) AS count\n 203→ FROM findings\n 204→ GROUP BY finding_hash\n 205→ HAVING COUNT(*) >= ?\n 206→ ORDER BY count DESC\n 207→ `).all(minOccurrences);\n 208→}\n 209→\n 210→export function resolveFinding(db, id) {\n 211→ db.prepare(`\n 212→ UPDATE findings SET resolved = 1 WHERE id = ?\n 213→ `).run(id);\n 214→}\n 215→\n 216→// ---------------------------------------------------------------------------\n 217→// Audit history\n 218→// ---------------------------------------------------------------------------\n 219→\n 220→export function insertAuditRecord(db, record) {\n 221→ db.prepare(`\n 222→ INSERT INTO audit_history (run_id, finding_count, fix_count, manual_count, quality_score_before, quality_score_after)\n 223→ VALUES (?, ?, ?, ?, ?, ?)\n 224→ `).run(\n 225→ record.run_id,\n 226→ record.finding_count ?? 0,\n 227→ record.fix_count ?? 0,\n 228→ record.manual_count ?? 0,\n 229→ record.quality_score_before ?? null,\n 230→ record.quality_score_after ?? null,\n 231→ );\n 232→}\n 233→\n 234→export function getAuditTrend(db, limit) {\n 235→ const limitClause = limit ? `LIMIT ${Number(limit)}` : '';\n 236→\n 237→ return db.prepare(`\n 238→ SELECT * FROM audit_history\n 239→ ORDER BY date DESC, id DESC\n 240→ ${limitClause}\n 241→ `).all();\n 242→}\n 243→\n 244→// ---------------------------------------------------------------------------\n 245→// Usage\n 246→// ---------------------------------------------------------------------------\n 247→\n 248→export function insertUsageRecord(db, record) {\n 249→ db.prepare(`\n 250→ INSERT INTO usage_aggregate (run_id, tokens_saved, bytes_avoided, savings_ratio, index_queries, routing_decisions)\n 251→ VALUES (?, ?, ?, ?, ?, ?)\n 252→ `).run(\n 253→ record.run_id,\n 254→ record.tokens_saved ?? 0,\n 255→ record.bytes_avoided ?? 0,\n 256→ record.savings_ratio ?? 0.0,\n 257→ record.index_queries ?? 0,\n 258→ record.routing_decisions ?? 0,\n 259→ );\n 260→}\n 261→\n 262→export function getUsageSummary(db) {\n 263→ const row = db.prepare(`\n 264→ SELECT\n 265→ COALESCE(SUM(tokens_saved), 0) AS total_tokens_saved,\n 266→ COALESCE(SUM(bytes_avoided), 0) AS total_bytes_avoided,\n 267→ CASE WHEN COUNT(*) > 0 THEN AVG(savings_ratio) ELSE 0.0 END AS avg_savings_ratio,\n 268→ COALESCE(SUM(index_queries), 0) AS total_index_queries,\n 269→ COUNT(*) AS run_count\n 270→ FROM usage_aggregate\n 271→ `).get();\n 272→\n 273→ return row;\n 274→}\n 275→\n 276→// ---------------------------------------------------------------------------\n 277→// Stats (for CLI)\n 278→// ---------------------------------------------------------------------------\n 279→\n 280→export function getStateCounts(db) {\n 281→ return {\n 282→ learning_count: db.prepare('SELECT COUNT(*) AS count FROM learnings').get().count,\n 283→ finding_count: db.prepare('SELECT COUNT(*) AS count FROM findings').get().count,\n 284→ audit_count: db.prepare('SELECT COUNT(*) AS count FROM audit_history').get().count,\n 285→ usage_count: db.prepare('SELECT COUNT(*) AS count FROM usage_aggregate').get().count,\n 286→ };\n 287→}\n 288→"}]},"uuid":"b4f9a580-1af1-4754-b57a-b7d91f9a7f66","timestamp":"2026-03-20T13:35:54.007Z","sourceToolAssistantUUID":"91d94fb3-e2f1-40a0-ad3e-bf8150a29cb9","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"7029a08f-6e93-4708-8ec0-23b7da50fe53","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_018mcpJaTmF3PE2Fzh5AswAu","type":"tool_result","content":" 1→import fs from 'node:fs';\n 2→import path from 'node:path';\n 3→\n 4→function ensureDirectory(dirPath) {\n 5→ fs.mkdirSync(dirPath, { recursive: true });\n 6→}\n 7→\n 8→function pathStaysInside(parentDir, candidatePath) {\n 9→ const relativePath = path.relative(parentDir, candidatePath);\n 10→ return relativePath === '' || (!relativePath.startsWith('..') && !path.isAbsolute(relativePath));\n 11→}\n 12→\n 13→export function getRunPaths(stateRoot, runId) {\n 14→ const runRoot = path.join(stateRoot, 'runs', runId);\n 15→ const capturesDir = path.join(runRoot, 'captures');\n 16→\n 17→ return {\n 18→ runRoot,\n 19→ capturesDir,\n 20→ statusPath: path.join(runRoot, 'status.json'),\n 21→ eventsPath: path.join(runRoot, 'events.ndjson'),\n 22→ decisionsPath: path.join(runRoot, 'decisions.ndjson'),\n 23→ summaryPath: path.join(runRoot, 'summary.md'),\n 24→ usagePath: path.join(runRoot, 'usage.json'),\n 25→ };\n 26→}\n 27→\n 28→export function ensureRunDirectories(runPaths) {\n 29→ ensureDirectory(runPaths.runRoot);\n 30→ ensureDirectory(runPaths.capturesDir);\n 31→}\n 32→\n 33→export function readStatus(runPaths) {\n 34→ if (!fs.existsSync(runPaths.statusPath)) {\n 35→ throw new Error(`Run status not found: ${runPaths.statusPath}`);\n 36→ }\n 37→\n 38→ return JSON.parse(fs.readFileSync(runPaths.statusPath, 'utf8'));\n 39→}\n 40→\n 41→export function writeStatus(runPaths, status) {\n 42→ ensureRunDirectories(runPaths);\n 43→ fs.writeFileSync(runPaths.statusPath, `${JSON.stringify(status, null, 2)}\\n`);\n 44→}\n 45→\n 46→export function appendEvent(runPaths, event) {\n 47→ ensureRunDirectories(runPaths);\n 48→ fs.appendFileSync(runPaths.eventsPath, `${JSON.stringify(event)}\\n`);\n 49→}\n 50→\n 51→function sanitizeCaptureName(name) {\n 52→ return name\n 53→ .toLowerCase()\n 54→ .replace(/[^a-z0-9]+/g, '-')\n 55→ .replace(/^-+|-+$/g, '') || 'capture';\n 56→}\n 57→\n 58→function normalizeSuffix(suffix) {\n 59→ if (!suffix) {\n 60→ return '.log';\n 61→ }\n 62→\n 63→ return suffix.startsWith('.') ? suffix : `.${suffix}`;\n 64→}\n 65→\n 66→export function createCaptureTarget(runPaths, options = {}) {\n 67→ ensureRunDirectories(runPaths);\n 68→ const timestamp = new Date().toISOString().replace(/[:.]/g, '-');\n 69→ const suffix = normalizeSuffix(options.suffix);\n 70→ const fileName = `${timestamp}-${sanitizeCaptureName(options.name ?? 'capture')}${suffix}`;\n 71→ const capturePath = path.join(runPaths.capturesDir, fileName);\n 72→ fs.writeFileSync(capturePath, '');\n 73→ return capturePath;\n 74→}\n 75→\n 76→export function resolveCapturePath(runPaths, capturePath, fallback = {}) {\n 77→ if (!capturePath) {\n 78→ return createCaptureTarget(runPaths, fallback);\n 79→ }\n 80→\n 81→ const resolvedPath = path.resolve(capturePath);\n 82→\n 83→ if (!pathStaysInside(runPaths.capturesDir, resolvedPath)) {\n 84→ throw new Error(`capture-path must stay inside ${runPaths.capturesDir}`);\n 85→ }\n 86→\n 87→ ensureRunDirectories(runPaths);\n 88→ ensureDirectory(path.dirname(resolvedPath));\n 89→ return resolvedPath;\n 90→}\n 91→\n 92→export function writeCaptureOutput(targetPath, content) {\n 93→ fs.writeFileSync(targetPath, content);\n 94→}\n 95→\n 96→export function readPhaseExitEvents(runPaths) {\n 97→ if (!fs.existsSync(runPaths.eventsPath)) {\n 98→ return [];\n 99→ }\n 100→\n 101→ const content = fs.readFileSync(runPaths.eventsPath, 'utf8');\n 102→ const completedPhases = [];\n 103→\n 104→ for (const line of content.split('\\n')) {\n 105→ const trimmed = line.trim();\n 106→ if (!trimmed) continue;\n 107→ try {\n 108→ const event = JSON.parse(trimmed);\n 109→ if (event.event === 'phase_exit' && event.status === 'completed' && event.phase) {\n 110→ completedPhases.push(event.phase);\n 111→ }\n 112→ } catch {\n 113→ // Skip malformed lines\n 114→ }\n 115→ }\n 116→\n 117→ return completedPhases;\n 118→}\n 119→\n 120→/**\n 121→ * Read phase exit events with full two-level detail (parent_phase + workflow).\n 122→ */\n 123→export function readPhaseExitEventsDetailed(runPaths) {\n 124→ if (!fs.existsSync(runPaths.eventsPath)) {\n 125→ return [];\n 126→ }\n 127→\n 128→ const content = fs.readFileSync(runPaths.eventsPath, 'utf8');\n 129→ const events = [];\n 130→\n 131→ for (const line of content.split('\\n')) {\n 132→ const trimmed = line.trim();\n 133→ if (!trimmed) continue;\n 134→ try {\n 135→ const event = JSON.parse(trimmed);\n 136→ if (event.event === 'phase_exit' && event.phase) {\n 137→ events.push({\n 138→ phase: event.phase,\n 139→ parent_phase: event.parent_phase ?? event.phase,\n 140→ workflow: event.workflow ?? event.phase,\n 141→ status: event.status,\n 142→ });\n 143→ }\n 144→ } catch {\n 145→ // Skip malformed lines\n 146→ }\n 147→ }\n 148→\n 149→ return events;\n 150→}\n 151→\n 152→export function writeSummary(runPaths, content) {\n 153→ ensureRunDirectories(runPaths);\n 154→ fs.writeFileSync(runPaths.summaryPath, content);\n 155→ return runPaths.summaryPath;\n 156→}\n 157→"}]},"uuid":"2808b84a-54a5-4d51-999f-7adc4b25a3f0","timestamp":"2026-03-20T13:35:54.930Z","sourceToolAssistantUUID":"7029a08f-6e93-4708-8ec0-23b7da50fe53","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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''}${error.stderr ?? ''}`);\n 77→ }\n 78→\n 79→ return null;\n 80→ }\n 81→}\n 82→\n 83→/**\n 84→ * Parse `git diff --stat` output for files changed, insertions, deletions.\n 85→ * @param {string} statOutput - output of git diff --stat\n 86→ * @returns {{ files_changed: number, insertions: number, deletions: number }}\n 87→ */\n 88→export function parseDiffStat(statOutput) {\n 89→ const result = { files_changed: 0, insertions: 0, deletions: 0 };\n 90→\n 91→ if (!statOutput) {\n 92→ return result;\n 93→ }\n 94→\n 95→ // Summary line: \" 5 files changed, 120 insertions(+), 30 deletions(-)\"\n 96→ const summaryMatch = statOutput.match(\n 97→ /(\\d+) files? changed(?:,\\s*(\\d+) insertions?\\(\\+\\))?(?:,\\s*(\\d+) deletions?\\(-\\))?/,\n 98→ );\n 99→\n 100→ if (summaryMatch) {\n 101→ result.files_changed = Number.parseInt(summaryMatch[1], 10);\n 102→ result.insertions = summaryMatch[2] ? Number.parseInt(summaryMatch[2], 10) : 0;\n 103→ result.deletions = summaryMatch[3] ? Number.parseInt(summaryMatch[3], 10) : 0;\n 104→ }\n 105→\n 106→ return result;\n 107→}\n 108→\n 109→/**\n 110→ * Parse `git diff --name-status` output into added/modified/deleted arrays.\n 111→ * @param {string} nameStatusOutput\n 112→ * @returns {{ added: string[], modified: string[], deleted: string[] }}\n 113→ */\n 114→export function parseNameStatus(nameStatusOutput) {\n 115→ const result = { added: [], modified: [], deleted: [] };\n 116→\n 117→ if (!nameStatusOutput) {\n 118→ return result;\n 119→ }\n 120→\n 121→ for (const line of nameStatusOutput.split('\\n')) {\n 122→ const trimmed = line.trim();\n 123→\n 124→ if (!trimmed) {\n 125→ continue;\n 126→ }\n 127→\n 128→ const statusChar = trimmed[0];\n 129→ const filePath = trimmed.slice(1).trim();\n 130→\n 131→ if (!filePath) {\n 132→ continue;\n 133→ }\n 134→\n 135→ switch (statusChar) {\n 136→ case 'A':\n 137→ result.added.push(filePath);\n 138→ break;\n 139→ case 'M':\n 140→ result.modified.push(filePath);\n 141→ break;\n 142→ case 'D':\n 143→ result.deleted.push(filePath);\n 144→ break;\n 145→ default:\n 146→ // R (rename), C (copy), etc. — treat as modified\n 147→ result.modified.push(filePath);\n 148→ break;\n 149→ }\n 150→ }\n 151→\n 152→ return result;\n 153→}\n 154→\n 155→/**\n 156→ * Collect diff stats from git.\n 157→ * @param {string} projectRoot\n 158→ * @param {string} baseBranch\n 159→ * @returns {{ files_changed: number, insertions: number, deletions: number } | null}\n 160→ */\n 161→function collectDiffStats(projectRoot, baseBranch) {\n 162→ try {\n 163→ const output = execFileSync(\n 164→ 'git',\n 165→ ['diff', '--stat', `${baseBranch}...HEAD`],\n 166→ { cwd: projectRoot, encoding: 'utf8', timeout: 15_000 },\n 167→ );\n 168→\n 169→ return parseDiffStat(output);\n 170→ } catch {\n 171→ return null;\n 172→ }\n 173→}\n 174→\n 175→/**\n 176→ * Collect file change summary from git.\n 177→ * @param {string} projectRoot\n 178→ * @param {string} baseBranch\n 179→ * @returns {{ added: string[], modified: string[], deleted: string[] } | null}\n 180→ */\n 181→function collectFileChanges(projectRoot, baseBranch) {\n 182→ try {\n 183→ const output = execFileSync(\n 184→ 'git',\n 185→ ['diff', '--name-status', `${baseBranch}...HEAD`],\n 186→ { cwd: projectRoot, encoding: 'utf8', timeout: 15_000 },\n 187→ );\n 188→\n 189→ return parseNameStatus(output);\n 190→ } catch {\n 191→ return null;\n 192→ }\n 193→}\n 194→\n 195→/**\n 196→ * List artifact files in run directories.\n 197→ * @param {string} stateRoot\n 198→ * @param {string} runId\n 199→ * @returns {string[]}\n 200→ */\n 201→function collectArtifacts(stateRoot, runId) {\n 202→ const artifacts = [];\n 203→ const clarifiedDir = path.join(stateRoot, 'runs', runId, 'clarified');\n 204→ const artifactsDir = path.join(stateRoot, 'runs', runId, 'artifacts');\n 205→\n 206→ for (const dir of [clarifiedDir, artifactsDir]) {\n 207→ if (fs.existsSync(dir)) {\n 208→ try {\n 209→ const entries = fs.readdirSync(dir);\n 210→\n 211→ for (const entry of entries) {\n 212→ artifacts.push(path.join(dir, entry));\n 213→ }\n 214→ } catch {\n 215→ // ignore read errors\n 216→ }\n 217→ }\n 218→ }\n 219→\n 220→ return artifacts;\n 221→}\n 222→\n 223→/**\n 224→ * Compute phase duration from events.ndjson.\n 225→ * Looks for phase_enter and phase_exit events matching the given phase.\n 226→ * @param {string} stateRoot\n 227→ * @param {string} runId\n 228→ * @param {string} phase\n 229→ * @returns {number | null} duration in seconds, or null if unavailable\n 230→ */\n 231→function collectDuration(stateRoot, runId, phase) {\n 232→ const eventsPath = path.join(stateRoot, 'runs', runId, 'events.ndjson');\n 233→\n 234→ if (!fs.existsSync(eventsPath)) {\n 235→ return null;\n 236→ }\n 237→\n 238→ try {\n 239→ const content = fs.readFileSync(eventsPath, 'utf8');\n 240→ const lines = content.split('\\n').filter(Boolean);\n 241→\n 242→ let enterTime = null;\n 243→ let exitTime = null;\n 244→\n 245→ for (const line of lines) {\n 246→ const event = JSON.parse(line);\n 247→\n 248→ if (event.phase !== phase) {\n 249→ continue;\n 250→ }\n 251→\n 252→ if (event.event === 'phase_enter' && event.created_at) {\n 253→ enterTime = new Date(event.created_at).getTime();\n 254→ }\n 255→\n 256→ if (event.event === 'phase_exit' && event.created_at) {\n 257→ exitTime = new Date(event.created_at).getTime();\n 258→ }\n 259→ }\n 260→\n 261→ if (enterTime !== null && exitTime !== null && exitTime > enterTime) {\n 262→ return Math.round((exitTime - enterTime) / 1000);\n 263→ }\n 264→\n 265→ return null;\n 266→ } catch {\n 267→ return null;\n 268→ }\n 269→}\n 270→\n 271→/**\n 272→ * Collect metrics for a phase report.\n 273→ * @param {object} opts\n 274→ * @param {string} opts.projectRoot - project root path\n 275→ * @param {string} opts.stateRoot - state root path\n 276→ * @param {string} opts.runId - current run ID\n 277→ * @param {string} opts.phase - phase name (init|clarifier|executor|final_review)\n 278→ * @param {string} [opts.baseBranch] - base branch for diff (default: 'main')\n 279→ * @returns {object} structured metrics\n 280→ */\n 281→export function collectPhaseMetrics(opts) {\n 282→ const { projectRoot, stateRoot, runId, phase } = opts;\n 283→ const baseBranch = opts.baseBranch ?? 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+ {"parentUuid":"ba654386-029b-45e6-8203-a10ad2964908","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01NoyCG1dVUU8HNyoVntxjeJ","type":"tool_result","content":"Web search results for query: \"SonarQube quality gate history trending across builds how it works\"\n\nLinks: [{\"title\":\"Understanding quality gates | SonarQube Server | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/quality-standards-administration/managing-quality-gates/introduction-to-quality-gates\"},{\"title\":\"Failed quality gate historical report - SonarQube Server / Community Build - Sonar Community\",\"url\":\"https://community.sonarsource.com/t/failed-quality-gate-historical-report/28853\"},{\"title\":\"Quality gates | SonarQube Server 9.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.8/user-guide/quality-gates\"},{\"title\":\"Quality gates | SonarQube Server 10.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.8/instance-administration/analysis-functions/quality-gates\"},{\"title\":\"Understanding quality gates | SonarQube Cloud | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-cloud/standards/managing-quality-gates/introduction-to-quality-gates\"},{\"title\":\"Understanding quality gates | SonarQube Community Build | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-community-build/quality-standards-administration/managing-quality-gates/introduction-to-quality-gates\"},{\"title\":\"Quality standards | SonarQube Server | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/instance-administration/analysis-functions/quality-standards\"},{\"title\":\"Quality gates | SonarQube Cloud | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-cloud/improving/quality-gates\"},{\"title\":\"Quality gates | SonarQube Server 10.5 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.5/user-guide/quality-gates\"},{\"title\":\"Quality gates | SonarQube Server 10.0 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.0/user-guide/quality-gates\"}]\n\nBased on the web search results, here's how SonarQube quality gate history and trending across builds works:\n\n## Quality Gate Basics\n\nSonarQube quality gates use sets of conditions to measure checks against your code during analysis, and depending on the result, code passes or fails the quality gate.\n\n## How Quality Gates are Evaluated Across Builds\n\nA quality gate consists of a set of conditions against which the code is measured during analysis, and a condition is defined on either new code or overall code. The quality gate status appears with analysis results of the main branch, other branches, and pull requests in the project's Overview page.\n\n## Notification and History Tracking\n\nNotifications are sent only when the Quality Gate status changes from Passed to Failed, or from Failed to Passed. This allows teams to track when quality gate status changes across successive builds.\n\nThe quality gate is computed after the second analysis, meaning you need multiple builds/analyses to see quality gate status changes over time.\n\n## Conditions for Quality Gates\n\nA quality gate is defined through a set of conditions on metrics calculated during the analysis. These conditions can apply to metrics like code coverage, duplicated lines, security issues, and code complexity, allowing you to track trends in these metrics across your builds.\n\nThe key to tracking quality gate history and trending is that SonarQube maintains the analysis results and conditions for each build, allowing you to monitor whether your code is consistently passing or failing quality gates and to see patterns in how your code quality metrics trend over time.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"3e18a115-bc33-4d3a-a63a-276d6525236f","timestamp":"2026-03-20T13:38:03.503Z","sourceToolAssistantUUID":"ba654386-029b-45e6-8203-a10ad2964908","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
85
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86
+ {"parentUuid":"167cbf5e-1ff9-4f54-b18c-bdcb7cce6dc0","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01AY4x6Qx2J5WGya9PabAKKW","type":"tool_result","content":"Web search results for query: \"CodeClimate GPA grade calculation maintainability how computed over time\"\n\nLinks: [{\"title\":\"Our 10-Point Technical Debt Assessment - Code Climate Blog\",\"url\":\"https://codeclimate.com/blog/10-point-technical-debt-assessment\"},{\"title\":\"Maintainability\",\"url\":\"https://docs.codeclimate.com/docs/maintainability\"},{\"title\":\"Introducing your Quality GPA\",\"url\":\"https://codeclimate.com/changelog/50aac67a13d6377e22000042/\"},{\"title\":\"Trends\",\"url\":\"https://docs.codeclimate.com/docs/trends\"},{\"title\":\"Qlty - Code Quality and Coverage\",\"url\":\"https://codeclimate.com/quality\"},{\"title\":\"Default Analysis Configuration\",\"url\":\"https://docs.codeclimate.com/docs/default-analysis-configuration\"},{\"title\":\"Code\",\"url\":\"https://docs.codeclimate.com/docs/the-code-page\"},{\"title\":\"Deciphering Ruby Code Metrics - Code Climate Blog\",\"url\":\"https://codeclimate.com/blog/deciphering-ruby-code-metrics\"},{\"title\":\"What is Qlty? | Qlty Docs\",\"url\":\"https://docs.codeclimate.com/docs/code-climate-glossary\"},{\"title\":\"DORA Assessment is Tricky — Here’s How We Calculate the 4 Metrics - Code Climate Blog\",\"url\":\"https://codeclimate.com/blog/dora-assessment\"}]\n\nBased on the search results, here's how CodeClimate's GPA grade and maintainability are calculated:\n\n## Quality GPA Calculation\n\nCodeClimate's Quality GPA is calculated by aggregating the ratings for each class and module, weighted by lines of code, into an average from 0 to 4.0.\n\n## Maintainability Rating Methodology\n\nCodeClimate's rating system is built on two pillars: maintainability (the opposite of technical debt) and test coverage.\n\nFor maintainability specifically, once the total remediation time for a source code file is determined, it is mapped onto a letter grade scale, where low remediation time receives a higher rating, and as the total remediation time of a file increases, the rating declines accordingly.\n\n## Project-Level Technical Debt Assessment\n\nCodeClimate estimates the total implementation time (in person-months) of a codebase based on total lines of code (LOC) in the project, and computes a technical debt ratio: the total technical debt time divided by the total implementation time, which can be expressed as a percentage with lower values being better.\n\n## Specific Maintainability Checks\n\nCodeClimate uses ten technical debt checks to assess maintainability: argument count, complex boolean logic, file length, identical blocks of code, method count, method length, nested control flow, return statements, and similar blocks of code.\n\nRegarding tracking over time, the Trends tab in CodeClimate allows you to monitor quality changes, though the search results don't provide extensive detail on the specific methodology for how trends are calculated over time periods.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"29e7598e-85f5-4f70-a5dd-1a6634fd06d5","timestamp":"2026-03-20T13:38:05.668Z","sourceToolAssistantUUID":"167cbf5e-1ff9-4f54-b18c-bdcb7cce6dc0","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
87
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88
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+ {"parentUuid":"b39669b2-15f4-4c72-9796-0784b1dfda2d","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_012QyebJi12vBJkLM62rHKQc","type":"tool_result","content":"Web search results for query: \"Sentry issue grouping fingerprint rules stack trace grouping variants hierarchical\"\n\nLinks: [{\"title\":\"Issue Grouping\",\"url\":\"https://docs.sentry.io/concepts/data-management/event-grouping/\"},{\"title\":\"Fingerprint Rules\",\"url\":\"https://docs.sentry.io/concepts/data-management/event-grouping/fingerprint-rules/\"},{\"title\":\"Stack Trace Rules\",\"url\":\"https://docs.sentry.io/concepts/data-management/event-grouping/stack-trace-rules/\"},{\"title\":\"Event Fingerprinting | Sentry for JavaScript\",\"url\":\"https://docs.sentry.io/platforms/javascript/enriching-events/fingerprinting/\"},{\"title\":\"Error Issues\",\"url\":\"https://docs.sentry.io/product/issues/issue-details/error-issues/\"},{\"title\":\"SDK Fingerprinting | Sentry for .NET\",\"url\":\"https://docs.sentry.io/platforms/dotnet/usage/sdk-fingerprinting/\"},{\"title\":\"Event Fingerprinting | Sentry for Nest.js\",\"url\":\"https://docs.sentry.io/platforms/javascript/guides/nestjs/enriching-events/fingerprinting/\"},{\"title\":\"Event Fingerprinting | Sentry for Express\",\"url\":\"https://docs.sentry.io/platforms/javascript/guides/express/enriching-events/fingerprinting/\"},{\"title\":\"Sentry\",\"url\":\"https://docs.sentry.io/product/issues/grouping-and-fingerprints.md\"},{\"title\":\"Event Fingerprinting | Sentry for Remix\",\"url\":\"https://docs.sentry.io/platforms/javascript/guides/remix/enriching-events/fingerprinting/\"}]\n\nBased on the search results, here's a comprehensive overview of Sentry's issue grouping, fingerprint rules, stack trace grouping, and related concepts:\n\n## Overview\n\nSentry's grouping hierarchy considers the fingerprint first, the stack trace next, then the exception, and finally the message.\n\n## Fingerprint Rules\n\nFingerprint rules (previously known as server-side fingerprinting) are configured similar to stack trace rules, but instead of flipping flags, a fingerprint is assigned and it overrides the default grouping entirely. Assigning a fingerprint can also refine the default grouping rather than overriding it if the fingerprint includes the value {{ default }}.\n\nWhen there are multiple rules that match the event, the first matching rule in the list is applied.\n\n## Stack Trace Rules\n\nStack trace rules (previously known as grouping enhancements) influence the data fed into the grouping algorithm and can be configured on a per-project basis in your project's Issue Grouping settings. Rules are applied sequentially, from top to bottom, across all frames in the stack trace.\n\n## Default Grouping Algorithm\n\nSentry's default fingerprinting algorithm generates a vector representation of the error's message and in-app stack frames using a transformer-based text embedding model, compares this embedding against existing error embeddings for that project, and if a semantically similar error is found within the configured threshold, Sentry merges the new error into the existing issue.\n\n## Stack Trace Handling\n\nWhen Sentry detects a stack trace in the event data, grouping is based entirely on the stack trace, with only frames that the SDK reports and associates with your application being used for grouping.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"c115bd58-36fb-45f8-9884-7b0e08afc5ce","timestamp":"2026-03-20T13:39:00.518Z","sourceToolAssistantUUID":"b39669b2-15f4-4c72-9796-0784b1dfda2d","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"8f90d548-cac6-445b-9a8e-0afbbfeb0322","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Tvh5U11MbFcHdKWzEU8r16","type":"tool_result","content":"Web search results for query: \"CodeClimate maintainability rating A B C D F thresholds technical debt ratio percentage calculation formula\"\n\nLinks: [{\"title\":\"Our 10-Point Technical Debt Assessment - Code Climate Blog\",\"url\":\"https://codeclimate.com/blog/10-point-technical-debt-assessment\"},{\"title\":\"Maintainability\",\"url\":\"https://docs.codeclimate.com/docs/maintainability\"},{\"title\":\"Default Analysis Configuration\",\"url\":\"https://docs.codeclimate.com/docs/default-analysis-configuration\"},{\"title\":\"Qlty - Code Quality and Coverage\",\"url\":\"https://codeclimate.com/quality/\"},{\"title\":\"What is Code Quality: Metrics & Practices | Ramotion Agency\",\"url\":\"https://www.ramotion.com/blog/what-is-code-quality/\"},{\"title\":\"How to quantifiably improve maintainability of your code using Code Climate for free on GitHub | by Dylan Souvage | Medium\",\"url\":\"https://dsouvage.medium.com/how-to-check-the-maintainability-of-your-code-using-code-climate-for-free-on-github-175e1a7a3f0c\"},{\"title\":\"How to Measure Code Quality That Actually Matters | Zest\",\"url\":\"https://meetzest.com/blog/how-to-measure-code-quality\"},{\"title\":\"Code Climate locally using VSCode + Remote-Containers\",\"url\":\"https://maddevs.io/blog/code-climate-code-analysis-locally-using-vscode-remote-containers/\"},{\"title\":\"Code Quality | GitLab Docs\",\"url\":\"https://docs.gitlab.com/ci/testing/code_quality/\"},{\"title\":\"How to Calculate Technical Debt: 5 Methods Compared | ScopeCone Blog | ScopeCone\",\"url\":\"https://scopecone.io/blog/how-to-calculate-technical-debt\"}]\n\nBased on the search results, here's what I found about CodeClimate's maintainability rating system:\n\n## Maintainability Score Formula\n\nMaintainability score is a computed technical debt ratio, which is the total estimated remediation time divided by a very high level total estimated implementation time, based on repository size.\n\n## Rating System\n\nCodeClimate assigns a simple letter grade (A-F) to files, though the specific thresholds for each letter grade (A, B, C, D, F) were not detailed in the search results.\n\n## Technical Debt Assessment Methodology\n\nCodeClimate uses ten technical debt checks to assess the maintainability of a file: Argument count, Complex boolean logic, File length, Identical blocks of code, Method count, Method length, Nested control flow, Return statements, and Similar blocks of code.\n\nMaintainability is an estimate of technical debt in the repo based on a standardized 10-point assessment of Duplication, Cyclomatic Complexity, Cognitive Complexity, and structural issues.\n\n## Default Thresholds\n\nThe default configuration includes: argument-count threshold of 4, complex-logic threshold of 4, file-lines threshold of 250, method-complexity threshold of 5, method-count threshold of 20, method-lines threshold of 25, nested-control-flow threshold of 4, and return-statements threshold of 4.\n\nThe search results indicate that the algorithms remain the same but the thresholds can be adjusted for customization.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"1b643fab-6b68-44e1-864a-0cbf83bf712f","timestamp":"2026-03-20T13:39:35.006Z","sourceToolAssistantUUID":"8f90d548-cac6-445b-9a8e-0afbbfeb0322","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"37265612-484a-4b86-ad60-18621a792e60","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01YTnmEQydATYcMd8MESZzbV","type":"tool_result","content":"Web search results for query: \"Sentry AI powered issue grouping semantic fingerprinting embedding model similarity threshold 2025 2026\"\n\nLinks: [{\"title\":\"Using a transformer–based text embeddings model to reduce Sentry alerts by 40% and cut through noise | Sentry\",\"url\":\"https://blog.sentry.io/how-sentry-decreased-issue-noise-with-ai/\"},{\"title\":\"Issue Grouping\",\"url\":\"https://docs.sentry.io/concepts/data-management/event-grouping/\"},{\"title\":\"AI-powered Issue Grouping now Generally Available | Sentry Changelog\",\"url\":\"https://sentry.io/changelog/ai-powered-issue-grouping-now-generally-available/\"},{\"title\":\"Fingerprint Rules\",\"url\":\"https://docs.sentry.io/product/data-management-settings/event-grouping/fingerprint-rules/\"},{\"title\":\"Sentry AI\",\"url\":\"https://docs.sentry.io/product/issues/issue-details/sentry-ai/\"},{\"title\":\"Sentry\",\"url\":\"https://docs.sentry.io/product/issues/grouping-and-fingerprints.md\"},{\"title\":\"3 Ways to Group Similar Issues | Sentry\",\"url\":\"https://sentry.io/resources/grouping-similar-issues/\"},{\"title\":\"Data Management\",\"url\":\"https://docs.sentry.io/data-management/event-grouping/sdk-fingerprinting/\"},{\"title\":\"Generative AI in Sentry\",\"url\":\"https://docs.sentry.io/product/issues/issue-details/sentry-seer\"},{\"title\":\"How to use fingerprint in order to avoid issues grouping? - #sentry\",\"url\":\"https://forum.sentry.io/t/how-to-use-fingerprint-in-order-to-avoid-issues-grouping/2723\"}]\n\nBased on the web search results, here's what I found about Sentry's AI-powered issue grouping with semantic fingerprinting:\n\n## Overview\n\nSentry layers on \"semantic\" fingerprinting to detect duplicate issues on top of existing, rule-based grouping. These types of issues are grouped together, reducing the number of issues created by 40%.\n\n## Technical Implementation\n\nAt its core is a fine-tuned, transformer-based, text embeddings model that encodes stack traces into vectors capturing the semantic essence of each error. This approach outperforms simplistic edit-distance measures because the transformer's attention mechanism helps tune out noisy variations—like shifting line numbers—and concentrate on meaningful signals that indicate genuine error similarity.\n\n## System Architecture\n\nWhen the existing fingerprinting algorithm detects a new hash, it sends the error data to Seer, Sentry's AI/ML service, which generates the vector embedding and checks it against existing embeddings in the database. Sentry uses the pgvector extension for vector search with a HNSW index for storage.\n\n## Similarity Threshold\n\nSentry settled on a very conservative threshold to apply to similarity scoring, one that overwhelmingly corresponded to human evaluators deciding that the two stack traces were indeed semantically identical. If a semantically similar error is found within the configured threshold, Sentry merges the new error into the existing issue.\n\n## Availability\n\nAI Issue Grouping is automatically enabled on all Sentry projects at no additional cost. The feature was announced as generally available in early 2025.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"9fd687c5-9baa-4a7b-aa03-4ebf112f0b3e","timestamp":"2026-03-20T13:39:37.311Z","sourceToolAssistantUUID":"37265612-484a-4b86-ad60-18621a792e60","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"cf5887a6-ef79-4bac-88d8-e851de266342","isSidechain":true,"promptId":"67fcde4a-7483-4526-a2da-9ae9514890c8","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01M2QH74cUnVMxVgpbtFbGNC","type":"tool_result","content":"Web search results for query: \"SonarQube new code definition clean as you code metrics history measures/search_history API\"\n\nLinks: [{\"title\":\"Understanding measures and metrics | SonarQube Server 10.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.8/user-guide/code-metrics/metrics-definition\"},{\"title\":\"Defining new code | SonarQube Server 10.1 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.1/project-administration/clean-as-you-code-settings/defining-new-code\"},{\"title\":\"Metric definitions | SonarQube Server 10.7 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.7/user-guide/code-metrics/metrics-definition\"},{\"title\":\"Defining new code | SonarQube Server 10.6 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.6/project-administration/clean-as-you-code-settings/defining-new-code/\"},{\"title\":\"Metric definitions | SonarQube Server 10.6 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.6/user-guide/code-metrics/metrics-definition\"},{\"title\":\"Defining new code\",\"url\":\"https://docs.sonarsource.com/sonarqube/10.1/project-administration/clean-as-you-code-settings/defining-new-code/\"},{\"title\":\"Clean as You Code | SonarQube Server 9.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.8/user-guide/clean-as-you-code\"},{\"title\":\"Defining New Code | SonarQube Server 9.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.8/project-administration/defining-new-code\"},{\"title\":\"Defining new code | SonarQube Server 10.4 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.4/project-administration/clean-as-you-code-settings/defining-new-code\"},{\"title\":\"Clean as You Code | SonarQube Server 9.9 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.9/user-guide/clean-as-you-code\"}]\n\nI've completed the web search for information about SonarQube's new code definition, Clean as You Code metrics, and related features. Here's what I found:\n\n## Key Information Found\n\n**New Code Definition:**\nEach SonarQube project has a new code definition (NCD), that is, a setting that tells SonarQube which part of the code is considered new code. When you run an analysis, SonarQube uses the new code definition to identify new code, then highlights issues in the new code. This helps you focus attention on the most recent changes to your codebase, helping you follow the Clean as You Code methodology.\n\n**Configuration Options:**\nYou can define new code at the global, project, or branch level. Global level: Set a global new code definition at Administration > Configuration > General Settings > New Code. Project level: Set a new code definition for your project at Project Settings > New Code.\n\n**New Code Definition Types:**\nDefines new code as any code that has changed in the last X days (max 90). For example, setting the Number of Days to 30 creates a new code period beginning 30 days before the current date.\n\n**Clean Code Metrics:**\nClean Code benefits: the software qualities metrics used in the Sonar solution. The documentation covers metrics related to reliability, security, and maintainability both for overall code and new code.\n\n**Measures and History:**\nNew code metrics are separated from overall code metrics in the main branch overview and the overviews of the other branches. The Measures panel separates new code data vs overall code data.\n\n**API Information:**\nIf you are looking for SonarQube API endpoints, you will find them in the SonarQube Server's help menu.\n\nThe search results provided comprehensive documentation about SonarQube's new code definition settings and Clean as You Code approach, though specific API endpoint details for measures/search_history would need to be accessed directly from SonarQube's API documentation portal.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"01068df6-8fcb-4b96-b24c-cdfd62ed943a","timestamp":"2026-03-20T13:39:38.728Z","sourceToolAssistantUUID":"cf5887a6-ef79-4bac-88d8-e851de266342","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"01068df6-8fcb-4b96-b24c-cdfd62ed943a","isSidechain":true,"agentId":"a4984db0b6a8eee07","message":{"model":"claude-opus-4-6","id":"msg_01DiHgNVJe8ZtVKrPEE8NBqH","type":"message","role":"assistant","content":[{"type":"text","text":"Now I have comprehensive research on all four systems. Let me also check one more specific aspect -- how SonarQube tracks the same issue across analyses (issue tracking lifecycle)."}],"stop_reason":null,"stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":3060,"cache_read_input_tokens":41913,"cache_creation":{"ephemeral_5m_input_tokens":3060,"ephemeral_1h_input_tokens":0},"output_tokens":1,"service_tier":"standard","inference_geo":"not_available"}},"requestId":"req_011CZERfj1ommizumvmHr6Vo","type":"assistant","uuid":"79f0a09a-5345-450c-9a08-910d644131f4","timestamp":"2026-03-20T13:39:58.423Z","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"14b28596-fb77-4434-8664-73667b51b17d","isSidechain":true,"agentId":"a4984db0b6a8eee07","type":"progress","data":{"type":"query_update","query":"SonarQube issue lifecycle tracking same issue across analyses"},"toolUseID":"search-progress-1","parentToolUseID":"toolu_01QugRB9iB4SvKYK9AkTQtT1","uuid":"f01e8017-5013-4702-bbe8-26632ec4bb6d","timestamp":"2026-03-20T13:40:00.209Z","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"f01e8017-5013-4702-bbe8-26632ec4bb6d","isSidechain":true,"agentId":"a4984db0b6a8eee07","type":"progress","data":{"type":"search_results_received","resultCount":10,"query":"SonarQube issue lifecycle tracking same issue across analyses"},"toolUseID":"srvtoolu_012c1eUb1nN6Eu4SmjzEmJcZ","parentToolUseID":"toolu_01QugRB9iB4SvKYK9AkTQtT1","uuid":"a5c15a0b-7299-45b0-b448-95c255ecb6e7","timestamp":"2026-03-20T13:40:01.805Z","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"14b28596-fb77-4434-8664-73667b51b17d","isSidechain":true,"promptId":"993bfee3-85a0-4b7f-b82a-ba53f3d6daa1","agentId":"a4984db0b6a8eee07","type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01QugRB9iB4SvKYK9AkTQtT1","type":"tool_result","content":"Web search results for query: \"SonarQube issue lifecycle tracking same issue across analyses \"issue tracking\" closed reopened confirmed\"\n\nLinks: [{\"title\":\"Issue management solution | SonarQube Server | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/user-guide/issues/solution-overview\"},{\"title\":\"Issue management solution | SonarQube Server 10.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.8/user-guide/issues/solution-overview\"},{\"title\":\"Issue management solution | SonarQube Cloud | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-cloud/managing-your-projects/issues/solution-overview\"},{\"title\":\"Issues | SonarQube Server 9.8 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.8/user-guide/issues/\"},{\"title\":\"Issues | SonarQube Server 9.9 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/9.9/user-guide/issues\"},{\"title\":\"Issue management solution overview | SonarQube Server 10.6 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.6/user-guide/issues/solution-overview/\"},{\"title\":\"Issues | SonarQube Server 10.4 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.4/user-guide/issues\"},{\"title\":\"Issue management solution overview & SonarQube\",\"url\":\"https://docs.sonarsource.com/sonarqube/latest/user-guide/issues/solution-overview/\"},{\"title\":\"Managing issues | SonarQube Server | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube/latest/user-guide/issues/\"},{\"title\":\"Issues | SonarQube Server 10.1 | Sonar Documentation\",\"url\":\"https://docs.sonarsource.com/sonarqube-server/10.1/user-guide/issues\"}]\n\nBased on the search results, here's what I found about SonarQube's issue lifecycle tracking across analyses:\n\n## Issue Tracking Across Analyses\n\nSonarQube uses an algorithm to determine whether an issue is new or existed previously by comparing issues found in the file from the previous analysis to each issue found in the current analysis.\n\n## Issue Lifecycle Statuses\n\nIssues flow through the following statuses: Open (initial value after the first analysis), Confirmed (set manually to indicate the issue is valid), Accepted (set by an authorized user to indicate the issue won't be fixed now), False positive (set by an authorized user if the analysis is mistaken), and Fixed (set by SonarQube after a subsequent analysis if the previously open issue has been corrected).\n\nAdditionally, a user can reopen an Accepted or False positive issue.\n\n## Automatic Issue Reopening\n\nSonarQube automatically reopens issues marked as fixed and not labeled as false positives when a subsequent analysis shows that they still exist.\n\n## Issue Matching Across Analyses\n\nIf the issue is on the same rule but the detected block moved inside the file, then if the issue is on the same line within the moved block and has the same message, it matches.\n\nThis matching algorithm allows SonarQube to track the same issue across multiple analyses and manage its lifecycle appropriately.\n\n\nREMINDER: You MUST include the sources above in your response to the user using markdown hyperlinks."}]},"uuid":"8191890e-244f-4b3c-bd71-53697e98b3d7","timestamp":"2026-03-20T13:40:05.799Z","sourceToolAssistantUUID":"14b28596-fb77-4434-8664-73667b51b17d","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}
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+ {"parentUuid":"8191890e-244f-4b3c-bd71-53697e98b3d7","isSidechain":true,"agentId":"a4984db0b6a8eee07","message":{"model":"claude-opus-4-6","id":"msg_013TDuA7pnkRcZ6TqSoEdGEZ","type":"message","role":"assistant","content":[{"type":"text","text":"Now I have everything I need. Let me synthesize all the research into the comprehensive output.\n\n---\n\n## Research Report: Cross-Run Findings Tracking and Pattern Detection\n\n### 1. SonarQube Quality Gate History\n\n**How it trends across builds:**\n\n- SonarQube stores analysis results per-build and evaluates quality gate conditions against metrics (coverage, duplications, security issues, complexity) at each analysis.\n- The \"New Code Period\" (formerly \"Leak Period\") is the core concept: it defines a sliding window (last N days, previous version, or reference branch) and applies quality gate conditions only to code changed within that window. This implements the \"Clean as You Code\" philosophy -- don't require fixing all legacy debt, just ensure new code meets standards.\n- The `api/measures/search_history` endpoint returns time-series data for any metric (e.g., `reliability_rating`, `sqale_debt_ratio`) across all analyses, enabling trend visualization.\n- Notifications fire only on **status transitions** (PASS->FAIL or FAIL->PASS), not on every build. This is a critical dedup insight: alert on state change, not on repeated state.\n\n**Issue tracking across analyses:**\n- SonarQube matches issues across successive analyses using a multi-signal algorithm: same rule + same file + same line within a moved block + same message = same issue.\n- Issues have a lifecycle: Open -> Confirmed -> Accepted/False Positive/Fixed. If an issue marked \"Fixed\" reappears in a later analysis, SonarQube automatically **reopens** it. This is exactly the recurrence detection pattern Wazir needs.\n\n**Key takeaway for Wazir:** Track quality gate status (PASS/FAIL) per run and alert only on transitions. Use issue-matching heuristics (rule + location + message) to detect the same finding across runs. Auto-reopen findings that were marked resolved but reappear.\n\n---\n\n### 2. CodeClimate GPA\n\n**How the grade is computed:**\n\n- Each file gets a letter grade (A-F) based on its **technical debt ratio**: total estimated remediation time divided by estimated implementation time (derived from LOC).\n- The project GPA is computed by aggregating per-file ratings, **weighted by lines of code**, into a 0.0-4.0 scale (A=4.0, F=0.0).\n- Ten standardized checks drive remediation time: argument count, complex boolean logic, file length, identical code blocks, method count, method length, nested control flow, return statements, similar code blocks, and cyclomatic/cognitive complexity.\n- Default thresholds: argument-count=4, complex-logic=4, file-lines=250, method-complexity=5, method-count=20, method-lines=25, nested-control-flow=4, return-statements=4.\n\n**How it tracks over time:**\n- The Trends tab shows GPA and issue count over time, with the concept of \"churn\" -- files that are both frequently modified AND low-grade are flagged as high-risk refactoring targets.\n- The \"Progress\" view tracks net issue changes (opened vs. closed) per time period.\n\n**Key takeaway for Wazir:** A single numeric score per run (quality GPA equivalent) enables trend comparison. Weight findings by scope/impact. Track \"churn\" -- findings in frequently-changed areas are higher priority than findings in stable code. The concept of \"net change\" (new findings minus resolved findings) per run is a clean metric.\n\n---\n\n### 3. PagerDuty Alert Dedup\n\n**How it detects \"this is the same issue recurring\":**\n\nPagerDuty uses three layers of deduplication and grouping:\n\n**Layer 1: dedup_key (exact match)**\n- Every alert event has a `dedup_key` -- a string that uniquely identifies the alert.\n- While an incident is **unresolved**, subsequent events with the same `dedup_key` are merged into the existing alert (no new notification).\n- Once the incident is **resolved**, a new event with the same `dedup_key` creates a **new** incident. This is the recurrence signal: same `dedup_key` appearing in a new incident means the issue recurred.\n\n**Layer 2: Content-Based Alert Grouping**\n- Groups alerts when all selected fields have an **exact match** (e.g., same hostname + same service + same check name).\n- This is configurable -- you pick which fields define \"sameness.\"\n\n**Layer 3: Intelligent Alert Grouping (ML)**\n- Uses machine learning to detect textual similarities between alerts.\n- Learns from operator actions: manually merging incidents teaches the model what \"same\" means; manually splitting teaches what \"different\" means.\n- This is a feedback loop -- the system improves over time based on human corrections.\n\n**Key takeaway for Wazir:** The `dedup_key` is the foundation -- in Wazir's case, the `finding_hash`. The three-layer model (exact hash -> field-based matching -> semantic similarity) is directly applicable. Critical insight: recurrence is detected by the same `dedup_key` appearing across separate resolved incidents. Track how many times a `dedup_key` has created new incidents to get recurrence count.\n\n---\n\n### 4. Sentry Issue Grouping\n\n**How errors are grouped:**\n\nSentry uses a hierarchical fingerprinting pipeline:\n\n1. **SDK fingerprint** (highest priority): If the client SDK sets a fingerprint, it overrides everything.\n2. **Server-side fingerprint rules**: Pattern-matching rules (e.g., \"if exception type is DatabaseError and message matches `*timeout*`, use fingerprint `db-timeout`\").\n3. **Stack trace rules**: Mark frames as `+app` or `-app`, `+group` or `-group` to control which frames contribute to the fingerprint.\n4. **Default algorithm**: Hashes the in-app stack frames. Falls back to exception type, then message.\n\n**The AI/semantic layer (Seer):**\n- When the default algorithm produces a new hash (potential new issue), it sends the error to Seer, an ML service.\n- Seer uses a **fine-tuned transformer-based text embedding model** to encode the error's message and stack frames into a vector.\n- The vector is compared against existing issue embeddings using **pgvector with HNSW index** (approximate nearest neighbor search).\n- If similarity exceeds a **conservative threshold** (calibrated against human evaluator agreement), the event is merged into the existing issue.\n- This reduced issue noise by **40%** -- meaning 40% of what looked like \"new\" issues were actually duplicates of existing ones.\n\n**Key takeaway for Wazir:** The hierarchical approach is powerful: exact hash first, then rule-based matching, then semantic similarity. The `{{ default }}` token in fingerprint rules allows *refining* rather than *replacing* the default grouping -- e.g., `{{ default }} + {{ transaction }}` groups by both the default fingerprint AND the transaction name. For Wazir, this means: hash the finding description for exact dedup, but also support rule-based grouping (e.g., all \"missing frontmatter\" findings group together regardless of which file) and similarity-based grouping for fuzzy matches.\n\n---\n\n## Synthesis: Cumulative Findings Schema for Wazir\n\n### Current State in Wazir\n\nThe existing `state/db.js` already has:\n- A `findings` table with `finding_hash`, `run_id`, `severity`, `resolved`\n- `getRecurringFindingHashes(db, minOccurrences)` -- groups by hash, counts\n- An `audit_history` table with `quality_score_before` / `quality_score_after`\n- A `learnings` table with `recurrence_count`\n\nThis is a solid foundation but lacks: lifecycle state transitions, trend scoring, improvement detection, and the multi-layer dedup/grouping model.\n\n### Proposed Schema: `cumulative_findings`\n\nHere is the complete schema design, drawing from all four systems:\n\n```sql\n-- ============================================================\n-- CUMULATIVE FINDINGS SCHEMA\n-- ============================================================\n\n-- 1. FINDING DEFINITIONS (canonical, deduplicated)\n-- One row per unique finding. The \"issue\" in Sentry/SonarQube terms.\n-- ============================================================\nCREATE TABLE IF NOT EXISTS finding_definitions (\n finding_hash TEXT PRIMARY KEY, -- SHA-256 of normalized description\n canonical_desc TEXT NOT NULL, -- first description that created this hash\n category TEXT NOT NULL, -- e.g. 'drift', 'missing-schema', 'lint', 'test-failure'\n severity_base TEXT NOT NULL -- initial severity: critical|high|medium|low\n CHECK(severity_base IN ('critical','high','medium','low')),\n first_seen_run TEXT NOT NULL, -- run_id where this finding first appeared\n first_seen_at TEXT NOT NULL, -- ISO timestamp\n last_seen_run TEXT, -- run_id where most recently observed\n last_seen_at TEXT, -- ISO timestamp\n resolved_run TEXT, -- run_id where it was resolved (NULL if open)\n resolved_at TEXT,\n lifecycle TEXT NOT NULL DEFAULT 'open' -- open|confirmed|resolved|wont_fix|false_positive\n CHECK(lifecycle IN ('open','confirmed','resolved','wont_fix','false_positive')),\n occurrence_count INTEGER DEFAULT 1, -- total times observed across all runs\n recurrence_count INTEGER DEFAULT 0, -- times it reappeared AFTER being resolved\n streak_open INTEGER DEFAULT 1, -- consecutive runs where it remained open\n streak_max INTEGER DEFAULT 1, -- longest consecutive open streak\n tags TEXT DEFAULT '' -- comma-separated tags for grouping rules\n);\n\nCREATE INDEX IF NOT EXISTS idx_fd_category ON finding_definitions(category);\nCREATE INDEX IF NOT EXISTS idx_fd_lifecycle ON finding_definitions(lifecycle);\nCREATE INDEX IF NOT EXISTS idx_fd_severity ON finding_definitions(severity_base);\n\n\n-- 2. FINDING OCCURRENCES (per-run observations)\n-- One row per finding per run. The \"event\" in Sentry terms.\n-- ============================================================\nCREATE TABLE IF NOT EXISTS finding_occurrences (\n id TEXT PRIMARY KEY, -- UUID\n finding_hash TEXT NOT NULL -- FK to finding_definitions\n REFERENCES finding_definitions(finding_hash),\n run_id TEXT NOT NULL,\n phase TEXT NOT NULL,\n source TEXT NOT NULL -- internal|codex|self-audit|gemini\n CHECK(source IN ('internal','codex','self-audit','gemini')),\n severity_run TEXT NOT NULL -- severity at time of this observation\n CHECK(severity_run IN ('critical','high','medium','low')),\n description TEXT NOT NULL, -- verbatim description from this run\n evidence TEXT, -- file path, line, snippet\n remediation TEXT, -- suggested fix\n auto_fixable INTEGER DEFAULT 0, -- 1 if machine-fixable\n was_fixed INTEGER DEFAULT 0, -- 1 if fixed during this run\n created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE INDEX IF NOT EXISTS idx_fo_finding_hash ON finding_occurrences(finding_hash);\nCREATE INDEX IF NOT EXISTS idx_fo_run_id ON finding_occurrences(run_id);\n\n\n-- 3. FINDING TRANSITIONS (lifecycle state changes)\n-- Inspired by SonarQube issue lifecycle. One row per state change.\n-- ============================================================\nCREATE TABLE IF NOT EXISTS finding_transitions (\n id INTEGER PRIMARY KEY AUTOINCREMENT,\n finding_hash TEXT NOT NULL\n REFERENCES finding_definitions(finding_hash),\n from_state TEXT NOT NULL,\n to_state TEXT NOT NULL,\n run_id TEXT NOT NULL, -- run that caused the transition\n reason TEXT, -- why the transition happened\n created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE INDEX IF NOT EXISTS idx_ft_finding_hash ON finding_transitions(finding_hash);\n\n\n-- 4. RUN QUALITY SNAPSHOTS (per-run aggregate scores)\n-- Inspired by SonarQube quality gate + CodeClimate GPA.\n-- ============================================================\nCREATE TABLE IF NOT EXISTS run_quality_snapshots (\n run_id TEXT PRIMARY KEY,\n timestamp TEXT NOT NULL,\n -- Counts\n total_open INTEGER DEFAULT 0, -- findings open at end of this run\n total_resolved INTEGER DEFAULT 0, -- findings resolved during this run\n new_findings INTEGER DEFAULT 0, -- findings first seen in this run\n recurrences INTEGER DEFAULT 0, -- findings that reappeared in this run\n -- Scores\n quality_score REAL, -- 0.0-4.0 GPA (CodeClimate style)\n quality_gate TEXT DEFAULT 'unknown' -- pass|fail|unknown\n CHECK(quality_gate IN ('pass','fail','unknown')),\n -- Deltas (vs previous run)\n delta_open INTEGER DEFAULT 0, -- change in open count vs previous\n delta_score REAL DEFAULT 0.0, -- change in quality score vs previous\n -- Severity breakdown\n critical_count INTEGER DEFAULT 0,\n high_count INTEGER DEFAULT 0,\n medium_count INTEGER DEFAULT 0,\n low_count INTEGER DEFAULT 0\n);\n\n\n-- 5. FINDING GROUPS (rule-based grouping, Sentry fingerprint rules style)\n-- Allows grouping multiple finding_hashes under one logical group.\n-- ============================================================\nCREATE TABLE IF NOT EXISTS finding_groups (\n group_id TEXT PRIMARY KEY, -- e.g. 'missing-frontmatter'\n group_name TEXT NOT NULL,\n rule_pattern TEXT NOT NULL, -- regex or keyword match on description\n created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS finding_group_members (\n group_id TEXT NOT NULL\n REFERENCES finding_groups(group_id),\n finding_hash TEXT NOT NULL\n REFERENCES finding_definitions(finding_hash),\n PRIMARY KEY (group_id, finding_hash)\n);\n```\n\n### Algorithm: Dedup (`finding_hash`)\n\nInspired by PagerDuty `dedup_key` and Sentry fingerprint hierarchy:\n\n```\nFUNCTION compute_finding_hash(finding):\n -- Layer 1: Explicit hash (SDK fingerprint equivalent)\n IF finding.explicit_hash IS NOT NULL:\n RETURN finding.explicit_hash\n\n -- Layer 2: Rule-based normalization\n normalized = finding.description\n |> lowercase\n |> strip file paths -- \"skills/foo/SKILL.md\" -> \"{file}\"\n |> strip counts -- \"count was 8, actual is 9\" -> \"count mismatch\"\n |> strip run IDs -- \"run-20260320-...\" -> \"{run}\"\n |> strip timestamps -- ISO dates -> \"{date}\"\n\n -- Layer 3: Category-scoped hash\n RETURN SHA-256(finding.category + \"::\" + normalized)\n```\n\nThe normalization step is critical -- it strips volatile details (specific file paths, numbers, timestamps) so that \"skills/foo/SKILL.md missing frontmatter\" and \"skills/bar/SKILL.md missing frontmatter\" produce the same hash when they represent the same class of problem. When they should remain distinct (different files matter), the category-specific normalization rules control the granularity.\n\n### Algorithm: Recurrence Detection\n\nInspired by PagerDuty resolved-then-retriggered and SonarQube auto-reopen:\n\n```\nFUNCTION process_finding_for_run(db, finding, run_id):\n hash = compute_finding_hash(finding)\n existing = db.get(finding_definitions, hash)\n\n IF existing IS NULL:\n -- Brand new finding\n INSERT INTO finding_definitions (hash, ..., lifecycle='open', occurrence_count=1)\n INSERT INTO finding_occurrences (...)\n RETURN { status: 'new' }\n\n -- Existing finding\n UPDATE finding_definitions SET\n occurrence_count = occurrence_count + 1,\n last_seen_run = run_id,\n last_seen_at = NOW()\n\n IF existing.lifecycle == 'resolved':\n -- RECURRENCE: was resolved, now it's back\n UPDATE finding_definitions SET\n lifecycle = 'open',\n recurrence_count = recurrence_count + 1,\n streak_open = 1\n INSERT INTO finding_transitions (\n hash, from='resolved', to='open', run_id, reason='recurrence'\n )\n RETURN { status: 'recurred', recurrence_count: existing.recurrence_count + 1 }\n\n IF existing.lifecycle == 'open' OR existing.lifecycle == 'confirmed':\n -- PERSISTENT: still open, increment streak\n UPDATE finding_definitions SET\n streak_open = streak_open + 1,\n streak_max = MAX(streak_max, streak_open + 1)\n RETURN { status: 'persistent', streak: existing.streak_open + 1 }\n\n -- wont_fix or false_positive: log observation but don't reopen\n INSERT INTO finding_occurrences (...)\n RETURN { status: 'suppressed' }\n```\n\n### Algorithm: Severity Scoring (Escalation on Recurrence)\n\nInspired by CodeClimate's weighted GPA and SonarQube's quality gate thresholds:\n\n```\nFUNCTION compute_effective_severity(finding_def):\n base = severity_to_number(finding_def.severity_base)\n -- critical=4, high=3, medium=2, low=1\n\n -- Recurrence escalation: each recurrence adds 0.5 (capped at critical)\n recurrence_boost = MIN(finding_def.recurrence_count * 0.5, 2.0)\n\n -- Persistence escalation: long open streaks add 0.25 per run (capped)\n persistence_boost = MIN((finding_def.streak_open - 1) * 0.25, 1.0)\n\n effective = MIN(base + recurrence_boost + persistence_boost, 4.0)\n\n RETURN number_to_severity(ROUND(effective))\n -- 4=critical, 3=high, 2=medium, 1=low\n\n\n-- Quality GPA per run (CodeClimate style, inverted)\nFUNCTION compute_run_quality_score(db, run_id):\n open_findings = get_open_findings_at_run(db, run_id)\n\n IF len(open_findings) == 0:\n RETURN 4.0 -- perfect score, no findings\n\n -- Weighted penalty: critical=1.0, high=0.6, medium=0.3, low=0.1\n total_penalty = SUM(severity_weight(f.effective_severity) for f in open_findings)\n -- Normalize against a baseline (e.g., max expected findings for project size)\n baseline = MAX(len(open_findings), 20) -- at least 20 to avoid oversensitivity\n raw_score = 4.0 - (total_penalty / baseline) * 4.0\n\n RETURN CLAMP(raw_score, 0.0, 4.0)\n```\n\n### Algorithm: Improvement Detection\n\nInspired by SonarQube quality gate transitions and CodeClimate progress tracking:\n\n```\nFUNCTION detect_improvements(db, run_id):\n current = get_run_quality_snapshot(db, run_id)\n previous = get_previous_run_quality_snapshot(db, run_id)\n\n improvements = []\n\n -- 1. Quality gate transition (SonarQube style)\n IF previous.quality_gate == 'fail' AND current.quality_gate == 'pass':\n improvements.push({ type: 'gate_recovered', message: 'Quality gate passed' })\n\n -- 2. Score improvement\n IF current.delta_score > 0:\n improvements.push({ type: 'score_improved', delta: current.delta_score })\n\n -- 3. Findings resolved (net reduction)\n IF current.delta_open < 0:\n improvements.push({\n type: 'findings_reduced',\n count: ABS(current.delta_open)\n })\n\n -- 4. Specific finding resolved after learning was applied\n resolved_this_run = SELECT fd.*\n FROM finding_definitions fd\n JOIN finding_transitions ft ON fd.finding_hash = ft.finding_hash\n WHERE ft.run_id = run_id\n AND ft.to_state = 'resolved'\n\n FOR EACH resolved IN resolved_this_run:\n -- Check if a learning was recorded that matches this finding's category\n related_learning = SELECT * FROM learnings\n WHERE category = resolved.category\n AND created_at > resolved.first_seen_at\n AND created_at <= current.timestamp\n LIMIT 1\n\n IF related_learning IS NOT NULL:\n improvements.push({\n type: 'learning_effective',\n finding_hash: resolved.finding_hash,\n learning_id: related_learning.id,\n message: 'Finding resolved after learning was applied'\n })\n\n -- 5. Recurrence rate declining\n recent_recurrences = count recurrences in last 5 runs\n older_recurrences = count recurrences in 5 runs before that\n IF recent_recurrences < older_recurrences:\n improvements.push({\n type: 'recurrence_declining',\n recent: recent_recurrences,\n older: older_recurrences\n })\n\n RETURN improvements\n```\n\n### Summary: What Each System Contributed\n\n| System | Concept Borrowed | Application in Wazir |\n|---|---|---|\n| **SonarQube** | Quality gate pass/fail transitions; issue lifecycle (open/confirmed/resolved/reopened); \"New Code Period\" focus on delta | `finding_transitions` table; `quality_gate` field in snapshots; `delta_open`/`delta_score` for net-change tracking |\n| **CodeClimate** | Weighted GPA (0-4.0); technical debt ratio; churn-weighted prioritization | `quality_score` computed as weighted inverse of open findings; `severity_weight` function; occurrence in frequently-changed areas escalates priority |\n| **PagerDuty** | `dedup_key` as foundation; three-layer grouping (exact/content/intelligent); recurrence = same key after resolution | `finding_hash` as `dedup_key`; `finding_groups` for rule-based grouping; recurrence detected when resolved finding reappears |\n| **Sentry** | Hierarchical fingerprinting (SDK -> rules -> default); semantic similarity via embeddings; `{{ default }}` refinement token | `compute_finding_hash` with explicit -> rule-based -> default layers; normalization strips volatile details; `finding_groups` for semantic grouping |\n\n### How This Extends the Existing Wazir State DB\n\nThe current `findings` table in `/Users/mohamedabdallah/Work/Wazir/tooling/src/state/db.js` becomes `finding_occurrences` (per-run events). The new `finding_definitions` table is the canonical deduplicated registry. The new `finding_transitions` and `run_quality_snapshots` tables add the lifecycle and trending dimensions that don't exist today. The existing `getRecurringFindingHashes()` function is the seed of the recurrence detection algorithm, but it only counts -- it doesn't track resolve/reopen transitions or escalate severity."}],"stop_reason":"end_turn","stop_sequence":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":1004,"cache_read_input_tokens":44973,"output_tokens":5682,"server_tool_use":{"web_search_requests":0,"web_fetch_requests":0},"service_tier":"standard","cache_creation":{"ephemeral_1h_input_tokens":0,"ephemeral_5m_input_tokens":1004},"inference_geo":"","iterations":[],"speed":"standard"}},"requestId":"req_011CZERgxu1LVwWSizE2iYFq","type":"assistant","uuid":"f9f320f9-0d22-48ac-8c6b-3e88a322ab43","timestamp":"2026-03-20T13:42:00.584Z","userType":"external","entrypoint":"cli","cwd":"/Users/mohamedabdallah/Work/Wazir","sessionId":"0c5a9bfa-6816-42b1-a97d-37ae7dad26c5","version":"2.1.80","gitBranch":"feat/remaining-6-fixes","slug":"mighty-wondering-giraffe"}