@vitessce/constants-internal 2.0.2 → 2.0.3

package/dist/index.mjs

@@ -0,0 +1,540 @@
+const ViewType = {
+  DESCRIPTION: "description",
+  STATUS: "status",
+  SCATTERPLOT: "scatterplot",
+  SPATIAL: "spatial",
+  HEATMAP: "heatmap",
+  LAYER_CONTROLLER: "layerController",
+  GENOMIC_PROFILES: "genomicProfiles",
+  GATING: "gating",
+  FEATURE_LIST: "featureList",
+  OBS_SETS: "obsSets",
+  OBS_SET_SIZES: "obsSetSizes",
+  OBS_SET_FEATURE_VALUE_DISTRIBUTION: "obsSetFeatureValueDistribution",
+  FEATURE_VALUE_HISTOGRAM: "featureValueHistogram"
+};
+const DataType = {
+  OBS_LABELS: "obsLabels",
+  OBS_EMBEDDING: "obsEmbedding",
+  OBS_LOCATIONS: "obsLocations",
+  OBS_FEATURE_MATRIX: "obsFeatureMatrix",
+  OBS_SETS: "obsSets",
+  FEATURE_LABELS: "featureLabels",
+  IMAGE: "image",
+  OBS_SEGMENTATIONS: "obsSegmentations",
+  NEIGHBORHOODS: "neighborhoods",
+  GENOMIC_PROFILES: "genomic-profiles"
+};
+const FileType = {
+  ANNDATA_ZARR: "anndata.zarr",
+  OBS_EMBEDDING_CSV: "obsEmbedding.csv",
+  OBS_LOCATIONS_CSV: "obsLocations.csv",
+  OBS_LABELS_CSV: "obsLabels.csv",
+  FEATURE_LABELS_CSV: "featureLabels.csv",
+  OBS_FEATURE_MATRIX_CSV: "obsFeatureMatrix.csv",
+  OBS_SEGMENTATIONS_JSON: "obsSegmentations.json",
+  OBS_SETS_CSV: "obsSets.csv",
+  OBS_SETS_JSON: "obsSets.json",
+  IMAGE_OME_ZARR: "image.ome-zarr",
+  OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
+  OBS_SETS_ANNDATA_ZARR: "obsSets.anndata.zarr",
+  OBS_EMBEDDING_ANNDATA_ZARR: "obsEmbedding.anndata.zarr",
+  OBS_LOCATIONS_ANNDATA_ZARR: "obsLocations.anndata.zarr",
+  OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
+  OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
+  FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
+  OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
+  OBS_EMBEDDING_MUDATA_ZARR: "obsEmbedding.mudata.zarr",
+  OBS_LOCATIONS_MUDATA_ZARR: "obsLocations.mudata.zarr",
+  OBS_SEGMENTATIONS_MUDATA_ZARR: "obsSegmentations.mudata.zarr",
+  OBS_LABELS_MUDATA_ZARR: "obsLabels.mudata.zarr",
+  FEATURE_LABELS_MUDATA_ZARR: "featureLabels.mudata.zarr",
+  GENOMIC_PROFILES_ZARR: "genomic-profiles.zarr",
+  NEIGHBORHOODS_JSON: "neighborhoods.json",
+  OBS_EMBEDDING_CELLS_JSON: "obsEmbedding.cells.json",
+  OBS_SEGMENTATIONS_CELLS_JSON: "obsSegmentations.cells.json",
+  OBS_LOCATIONS_CELLS_JSON: "obsLocations.cells.json",
+  OBS_LABELS_CELLS_JSON: "obsLabels.cells.json",
+  OBS_SETS_CELL_SETS_JSON: "obsSets.cell-sets.json",
+  OBS_FEATURE_MATRIX_GENES_JSON: "obsFeatureMatrix.genes.json",
+  OBS_FEATURE_MATRIX_CLUSTERS_JSON: "obsFeatureMatrix.clusters.json",
+  OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: "obsFeatureMatrix.expression-matrix.zarr",
+  IMAGE_RASTER_JSON: "image.raster.json",
+  OBS_SEGMENTATIONS_RASTER_JSON: "obsSegmentations.raster.json",
+  OBS_LOCATIONS_MOLECULES_JSON: "obsLocations.molecules.json",
+  OBS_LABELS_MOLECULES_JSON: "obsLabels.molecules.json",
+  CELLS_JSON: "cells.json",
+  CELL_SETS_JSON: "cell-sets.json",
+  ANNDATA_CELL_SETS_ZARR: "anndata-cell-sets.zarr",
+  ANNDATA_CELLS_ZARR: "anndata-cells.zarr",
+  EXPRESSION_MATRIX_ZARR: "expression-matrix.zarr",
+  MOLECULES_JSON: "molecules.json",
+  RASTER_JSON: "raster.json",
+  RASTER_OME_ZARR: "raster.ome-zarr",
+  CLUSTERS_JSON: "clusters.json",
+  GENES_JSON: "genes.json",
+  ANNDATA_EXPRESSION_MATRIX_ZARR: "anndata-expression-matrix.zarr"
+};
+const CoordinationType = {
+  DATASET: "dataset",
+  OBS_TYPE: "obsType",
+  FEATURE_TYPE: "featureType",
+  FEATURE_VALUE_TYPE: "featureValueType",
+  OBS_LABELS_TYPE: "obsLabelsType",
+  EMBEDDING_TYPE: "embeddingType",
+  EMBEDDING_ZOOM: "embeddingZoom",
+  EMBEDDING_ROTATION: "embeddingRotation",
+  EMBEDDING_TARGET_X: "embeddingTargetX",
+  EMBEDDING_TARGET_Y: "embeddingTargetY",
+  EMBEDDING_TARGET_Z: "embeddingTargetZ",
+  EMBEDDING_OBS_SET_POLYGONS_VISIBLE: "embeddingObsSetPolygonsVisible",
+  EMBEDDING_OBS_SET_LABELS_VISIBLE: "embeddingObsSetLabelsVisible",
+  EMBEDDING_OBS_SET_LABEL_SIZE: "embeddingObsSetLabelSize",
+  EMBEDDING_OBS_RADIUS: "embeddingObsRadius",
+  EMBEDDING_OBS_RADIUS_MODE: "embeddingObsRadiusMode",
+  EMBEDDING_OBS_OPACITY: "embeddingObsOpacity",
+  EMBEDDING_OBS_OPACITY_MODE: "embeddingObsOpacityMode",
+  SPATIAL_ZOOM: "spatialZoom",
+  SPATIAL_ROTATION: "spatialRotation",
+  SPATIAL_TARGET_X: "spatialTargetX",
+  SPATIAL_TARGET_Y: "spatialTargetY",
+  SPATIAL_TARGET_Z: "spatialTargetZ",
+  SPATIAL_ROTATION_X: "spatialRotationX",
+  SPATIAL_ROTATION_Y: "spatialRotationY",
+  SPATIAL_ROTATION_Z: "spatialRotationZ",
+  SPATIAL_ROTATION_ORBIT: "spatialRotationOrbit",
+  SPATIAL_ORBIT_AXIS: "spatialOrbitAxis",
+  SPATIAL_AXIS_FIXED: "spatialAxisFixed",
+  HEATMAP_ZOOM_X: "heatmapZoomX",
+  HEATMAP_ZOOM_Y: "heatmapZoomY",
+  HEATMAP_TARGET_X: "heatmapTargetX",
+  HEATMAP_TARGET_Y: "heatmapTargetY",
+  OBS_FILTER: "obsFilter",
+  OBS_HIGHLIGHT: "obsHighlight",
+  OBS_SET_SELECTION: "obsSetSelection",
+  OBS_SET_HIGHLIGHT: "obsSetHighlight",
+  OBS_SET_COLOR: "obsSetColor",
+  FEATURE_FILTER: "featureFilter",
+  FEATURE_HIGHLIGHT: "featureHighlight",
+  FEATURE_SELECTION: "featureSelection",
+  FEATURE_VALUE_COLORMAP: "featureValueColormap",
+  FEATURE_VALUE_TRANSFORM: "featureValueTransform",
+  FEATURE_VALUE_COLORMAP_RANGE: "featureValueColormapRange",
+  OBS_COLOR_ENCODING: "obsColorEncoding",
+  SPATIAL_IMAGE_LAYER: "spatialImageLayer",
+  SPATIAL_SEGMENTATION_LAYER: "spatialSegmentationLayer",
+  SPATIAL_POINT_LAYER: "spatialPointLayer",
+  SPATIAL_NEIGHBORHOOD_LAYER: "spatialNeighborhoodLayer",
+  GENOMIC_ZOOM_X: "genomicZoomX",
+  GENOMIC_ZOOM_Y: "genomicZoomY",
+  GENOMIC_TARGET_X: "genomicTargetX",
+  GENOMIC_TARGET_Y: "genomicTargetY",
+  ADDITIONAL_OBS_SETS: "additionalObsSets",
+  MOLECULE_HIGHLIGHT: "moleculeHighlight",
+  GATING_FEATURE_SELECTION_X: "gatingFeatureSelectionX",
+  GATING_FEATURE_SELECTION_Y: "gatingFeatureSelectionY",
+  FEATURE_VALUE_TRANSFORM_COEFFICIENT: "featureValueTransformCoefficient"
+};
+const STATUS = {
+  LOADING: "loading",
+  SUCCESS: "success",
+  ERROR: "error"
+};
+const FILE_TYPE_DATA_TYPE_MAPPING = {
+  [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
+  [FileType.OBS_FEATURE_MATRIX_CSV]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SEGMENTATIONS_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
+  [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
+  [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
+  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
+  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
+  [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_CELLS_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_CELLS_JSON]: DataType.OBS_LABELS,
+  [FileType.OBS_SETS_CELL_SETS_JSON]: DataType.OBS_SETS,
+  [FileType.OBS_FEATURE_MATRIX_GENES_JSON]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.IMAGE_RASTER_JSON]: DataType.IMAGE,
+  [FileType.OBS_SEGMENTATIONS_RASTER_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LOCATIONS_MOLECULES_JSON]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_LABELS_MOLECULES_JSON]: DataType.OBS_LABELS,
+  [FileType.GENOMIC_PROFILES_ZARR]: DataType.GENOMIC_PROFILES,
+  [FileType.NEIGHBORHOODS_JSON]: DataType.NEIGHBORHOODS
+};
+const DATA_TYPE_COORDINATION_VALUE_USAGE = {
+  [DataType.OBS_SEGMENTATIONS]: [
+    CoordinationType.OBS_TYPE
+  ],
+  [DataType.OBS_EMBEDDING]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.EMBEDDING_TYPE
+  ],
+  [DataType.OBS_LOCATIONS]: [
+    CoordinationType.OBS_TYPE
+  ],
+  [DataType.OBS_LABELS]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_LABELS_TYPE
+  ],
+  [DataType.FEATURE_LABELS]: [
+    CoordinationType.FEATURE_TYPE
+  ],
+  [DataType.OBS_SETS]: [
+    CoordinationType.OBS_TYPE
+  ],
+  [DataType.OBS_FEATURE_MATRIX]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE
+  ],
+  [DataType.GENOMIC_PROFILES]: [],
+  [DataType.IMAGE]: [],
+  [DataType.NEIGHBORHOODS]: []
+};
+const DEFAULT_COORDINATION_VALUES = {
+  [CoordinationType.OBS_TYPE]: "cell",
+  [CoordinationType.FEATURE_TYPE]: "gene",
+  [CoordinationType.FEATURE_VALUE_TYPE]: "expression",
+  [CoordinationType.OBS_LABELS_TYPE]: null,
+  [CoordinationType.EMBEDDING_ZOOM]: null,
+  [CoordinationType.EMBEDDING_ROTATION]: 0,
+  [CoordinationType.EMBEDDING_TARGET_X]: null,
+  [CoordinationType.EMBEDDING_TARGET_Y]: null,
+  [CoordinationType.EMBEDDING_TARGET_Z]: 0,
+  [CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE]: false,
+  [CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE]: false,
+  [CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE]: 14,
+  [CoordinationType.EMBEDDING_OBS_RADIUS]: 1,
+  [CoordinationType.EMBEDDING_OBS_RADIUS_MODE]: "auto",
+  [CoordinationType.EMBEDDING_OBS_OPACITY]: 1,
+  [CoordinationType.EMBEDDING_OBS_OPACITY_MODE]: "auto",
+  [CoordinationType.SPATIAL_ZOOM]: null,
+  [CoordinationType.SPATIAL_ROTATION]: 0,
+  [CoordinationType.SPATIAL_TARGET_X]: null,
+  [CoordinationType.SPATIAL_TARGET_Y]: null,
+  [CoordinationType.SPATIAL_TARGET_Z]: null,
+  [CoordinationType.SPATIAL_ROTATION_X]: null,
+  [CoordinationType.SPATIAL_ROTATION_Y]: null,
+  [CoordinationType.SPATIAL_ROTATION_Z]: null,
+  [CoordinationType.SPATIAL_AXIS_FIXED]: false,
+  [CoordinationType.SPATIAL_ROTATION_ORBIT]: 0,
+  [CoordinationType.SPATIAL_ORBIT_AXIS]: "Y",
+  [CoordinationType.SPATIAL_IMAGE_LAYER]: null,
+  [CoordinationType.SPATIAL_SEGMENTATION_LAYER]: null,
+  [CoordinationType.SPATIAL_POINT_LAYER]: null,
+  [CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER]: null,
+  [CoordinationType.HEATMAP_ZOOM_X]: 0,
+  [CoordinationType.HEATMAP_ZOOM_Y]: 0,
+  [CoordinationType.HEATMAP_TARGET_X]: 0,
+  [CoordinationType.HEATMAP_TARGET_Y]: 0,
+  [CoordinationType.FEATURE_VALUE_COLORMAP]: "plasma",
+  [CoordinationType.FEATURE_VALUE_COLORMAP_RANGE]: [0, 1],
+  [CoordinationType.FEATURE_VALUE_TRANSFORM]: null,
+  [CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT]: 1,
+  [CoordinationType.FEATURE_FILTER]: null,
+  [CoordinationType.FEATURE_HIGHLIGHT]: null,
+  [CoordinationType.FEATURE_SELECTION]: null,
+  [CoordinationType.OBS_FILTER]: null,
+  [CoordinationType.OBS_HIGHLIGHT]: null,
+  [CoordinationType.OBS_SET_SELECTION]: null,
+  [CoordinationType.OBS_SET_HIGHLIGHT]: null,
+  [CoordinationType.OBS_SET_COLOR]: null,
+  [CoordinationType.OBS_COLOR_ENCODING]: "cellSetSelection",
+  [CoordinationType.GENOMIC_ZOOM_X]: 0,
+  [CoordinationType.GENOMIC_ZOOM_Y]: 0,
+  [CoordinationType.GENOMIC_TARGET_X]: 15499999995e-1,
+  [CoordinationType.GENOMIC_TARGET_Y]: 15499999995e-1,
+  [CoordinationType.ADDITIONAL_OBS_SETS]: null,
+  [CoordinationType.MOLECULE_HIGHLIGHT]: null,
+  [CoordinationType.GATING_FEATURE_SELECTION_X]: null,
+  [CoordinationType.GATING_FEATURE_SELECTION_Y]: null
+};
+const AUTO_INDEPENDENT_COORDINATION_TYPES = [
+  CoordinationType.HEATMAP_ZOOM_X,
+  CoordinationType.HEATMAP_ZOOM_Y,
+  CoordinationType.HEATMAP_TARGET_X,
+  CoordinationType.HEATMAP_TARGET_Y,
+  CoordinationType.EMBEDDING_ZOOM,
+  CoordinationType.EMBEDDING_TARGET_X,
+  CoordinationType.EMBEDDING_TARGET_Y,
+  CoordinationType.EMBEDDING_TARGET_Z,
+  CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+  CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+  CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+  CoordinationType.EMBEDDING_OBS_RADIUS,
+  CoordinationType.EMBEDDING_OBS_OPACITY
+];
+const COMPONENT_COORDINATION_TYPES = {
+  [ViewType.SCATTERPLOT]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.OBS_LABELS_TYPE,
+    CoordinationType.EMBEDDING_TYPE,
+    CoordinationType.EMBEDDING_ZOOM,
+    CoordinationType.EMBEDDING_ROTATION,
+    CoordinationType.EMBEDDING_TARGET_X,
+    CoordinationType.EMBEDDING_TARGET_Y,
+    CoordinationType.EMBEDDING_TARGET_Z,
+    CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+    CoordinationType.EMBEDDING_OBS_RADIUS,
+    CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+    CoordinationType.EMBEDDING_OBS_OPACITY,
+    CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+    CoordinationType.OBS_FILTER,
+    CoordinationType.OBS_HIGHLIGHT,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.FEATURE_VALUE_COLORMAP,
+    CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.ADDITIONAL_OBS_SETS
+  ],
+  [ViewType.GATING]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.EMBEDDING_TYPE,
+    CoordinationType.EMBEDDING_ZOOM,
+    CoordinationType.EMBEDDING_ROTATION,
+    CoordinationType.EMBEDDING_TARGET_X,
+    CoordinationType.EMBEDDING_TARGET_Y,
+    CoordinationType.EMBEDDING_TARGET_Z,
+    CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+    CoordinationType.EMBEDDING_OBS_RADIUS,
+    CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+    CoordinationType.EMBEDDING_OBS_OPACITY,
+    CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+    CoordinationType.OBS_FILTER,
+    CoordinationType.OBS_HIGHLIGHT,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.FEATURE_VALUE_COLORMAP,
+    CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.FEATURE_VALUE_TRANSFORM,
+    CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+    CoordinationType.GATING_FEATURE_SELECTION_X,
+    CoordinationType.GATING_FEATURE_SELECTION_Y
+  ],
+  [ViewType.SPATIAL]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_LABELS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.SPATIAL_ZOOM,
+    CoordinationType.SPATIAL_ROTATION,
+    CoordinationType.SPATIAL_IMAGE_LAYER,
+    CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+    CoordinationType.SPATIAL_POINT_LAYER,
+    CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+    CoordinationType.SPATIAL_TARGET_X,
+    CoordinationType.SPATIAL_TARGET_Y,
+    CoordinationType.SPATIAL_TARGET_Z,
+    CoordinationType.SPATIAL_ROTATION_X,
+    CoordinationType.SPATIAL_ROTATION_Y,
+    CoordinationType.SPATIAL_ROTATION_Z,
+    CoordinationType.SPATIAL_ROTATION_ORBIT,
+    CoordinationType.SPATIAL_ORBIT_AXIS,
+    CoordinationType.SPATIAL_AXIS_FIXED,
+    CoordinationType.OBS_FILTER,
+    CoordinationType.OBS_HIGHLIGHT,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.FEATURE_VALUE_COLORMAP,
+    CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.MOLECULE_HIGHLIGHT
+  ],
+  [ViewType.HEATMAP]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_LABELS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.HEATMAP_ZOOM_X,
+    CoordinationType.HEATMAP_ZOOM_Y,
+    CoordinationType.HEATMAP_TARGET_X,
+    CoordinationType.HEATMAP_TARGET_Y,
+    CoordinationType.OBS_FILTER,
+    CoordinationType.OBS_HIGHLIGHT,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.FEATURE_FILTER,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.FEATURE_VALUE_COLORMAP,
+    CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.ADDITIONAL_OBS_SETS
+  ],
+  [ViewType.OBS_SETS]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.FEATURE_SELECTION
+  ],
+  [ViewType.OBS_SET_SIZES]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.ADDITIONAL_OBS_SETS
+  ],
+  [ViewType.STATUS]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_HIGHLIGHT,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.MOLECULE_HIGHLIGHT
+  ],
+  [ViewType.FEATURE_LIST]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.FEATURE_FILTER,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.OBS_SET_SELECTION
+  ],
+  [ViewType.OBS_SET_FEATURE_VALUE_DISTRIBUTION]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.FEATURE_VALUE_TRANSFORM,
+    CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.ADDITIONAL_OBS_SETS
+  ],
+  [ViewType.FEATURE_VALUE_HISTOGRAM]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.FEATURE_SELECTION
+  ],
+  [ViewType.LAYER_CONTROLLER]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.SPATIAL_IMAGE_LAYER,
+    CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+    CoordinationType.SPATIAL_POINT_LAYER,
+    CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+    CoordinationType.SPATIAL_ZOOM,
+    CoordinationType.SPATIAL_TARGET_X,
+    CoordinationType.SPATIAL_TARGET_Y,
+    CoordinationType.SPATIAL_TARGET_Z,
+    CoordinationType.SPATIAL_ROTATION_X,
+    CoordinationType.SPATIAL_ROTATION_Y,
+    CoordinationType.SPATIAL_ROTATION_Z,
+    CoordinationType.SPATIAL_ROTATION_ORBIT,
+    CoordinationType.SPATIAL_ORBIT_AXIS
+  ],
+  [ViewType.GENOMIC_PROFILES]: [
+    CoordinationType.DATASET,
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+    CoordinationType.GENOMIC_ZOOM_X,
+    CoordinationType.GENOMIC_ZOOM_Y,
+    CoordinationType.GENOMIC_TARGET_X,
+    CoordinationType.GENOMIC_TARGET_Y,
+    CoordinationType.FEATURE_FILTER,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_HIGHLIGHT,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.ADDITIONAL_OBS_SETS
+  ],
+  [ViewType.DESCRIPTION]: [
+    CoordinationType.DATASET,
+    CoordinationType.SPATIAL_IMAGE_LAYER
+  ],
+  higlass: [
+    CoordinationType.DATASET,
+    CoordinationType.GENOMIC_ZOOM_X,
+    CoordinationType.GENOMIC_ZOOM_Y,
+    CoordinationType.GENOMIC_TARGET_X,
+    CoordinationType.GENOMIC_TARGET_Y,
+    CoordinationType.FEATURE_FILTER,
+    CoordinationType.FEATURE_HIGHLIGHT,
+    CoordinationType.FEATURE_SELECTION
+  ]
+};
+const note = "This file is regenerated by push-demo.sh.";
+const version = "2.0.3";
+const branch = "release-v2.0.3";
+const date = "2023-02-07";
+const hash = "ca9494c3";
+const version$1 = {
+  note,
+  version,
+  branch,
+  date,
+  hash
+};
+export {
+  AUTO_INDEPENDENT_COORDINATION_TYPES,
+  COMPONENT_COORDINATION_TYPES,
+  CoordinationType,
+  DATA_TYPE_COORDINATION_VALUE_USAGE,
+  DEFAULT_COORDINATION_VALUES,
+  DataType,
+  FILE_TYPE_DATA_TYPE_MAPPING,
+  FileType,
+  version$1 as META_VERSION,
+  STATUS,
+  ViewType
+};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/constants-internal",
-  "version": "2.0.2",
+  "version": "2.0.3",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -8,17 +8,17 @@
     "url": "git+https://github.com/vitessce/vitessce.git"
   },
   "license": "MIT",
-  "main": "dist/index.js",
+  "main": "dist/index.mjs",
   "files": [
-    "dist"
+    "dist",
+    "src"
   ],
   "devDependencies": {
     "vite": "^3.0.0",
     "vitest": "^0.23.4"
   },
   "scripts": {
-    "start": "tsc --watch",
-    "build": "tsc",
+    "bundle": "pnpm exec vite build -c ../../scripts/vite.config.js",
     "test": "pnpm exec vitest --run -r ../../ --dir ."
   }
 }

package/src/constant-relationships.js

@@ -0,0 +1,85 @@
+import { FileType, DataType, CoordinationType } from './constants';
+
+/**
+ * Mapping from file types to data types. Each file type
+ * should correspond to one data type. Multiple file types
+ * can map onto the same data type.
+ */
+export const FILE_TYPE_DATA_TYPE_MAPPING = {
+  // For new file types
+  [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
+  [FileType.OBS_FEATURE_MATRIX_CSV]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SEGMENTATIONS_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
+  [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
+  [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
+  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
+  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
+  [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
+  [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+  // For new file types to support old file types
+  [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
+  [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_SEGMENTATIONS_CELLS_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LABELS_CELLS_JSON]: DataType.OBS_LABELS,
+  [FileType.OBS_SETS_CELL_SETS_JSON]: DataType.OBS_SETS,
+  [FileType.OBS_FEATURE_MATRIX_GENES_JSON]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.IMAGE_RASTER_JSON]: DataType.IMAGE,
+  [FileType.OBS_SEGMENTATIONS_RASTER_JSON]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_LOCATIONS_MOLECULES_JSON]: DataType.OBS_LOCATIONS,
+  [FileType.OBS_LABELS_MOLECULES_JSON]: DataType.OBS_LABELS,
+  // For old file types
+  [FileType.GENOMIC_PROFILES_ZARR]: DataType.GENOMIC_PROFILES,
+  [FileType.NEIGHBORHOODS_JSON]: DataType.NEIGHBORHOODS,
+};
+
+/**
+ * Store a mapping from data types to the coordination types used
+ * for matching using the coordinationValues field of file definitions.
+ * This enables inferring default values, simplifying view config writing.
+ */
+export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
+  [DataType.OBS_SEGMENTATIONS]: [
+    CoordinationType.OBS_TYPE,
+  ],
+  [DataType.OBS_EMBEDDING]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.EMBEDDING_TYPE,
+  ],
+  [DataType.OBS_LOCATIONS]: [
+    CoordinationType.OBS_TYPE,
+  ],
+  [DataType.OBS_LABELS]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.OBS_LABELS_TYPE,
+  ],
+  [DataType.FEATURE_LABELS]: [
+    CoordinationType.FEATURE_TYPE,
+  ],
+  [DataType.OBS_SETS]: [
+    CoordinationType.OBS_TYPE,
+  ],
+  [DataType.OBS_FEATURE_MATRIX]: [
+    CoordinationType.OBS_TYPE,
+    CoordinationType.FEATURE_TYPE,
+    CoordinationType.FEATURE_VALUE_TYPE,
+  ],
+  [DataType.GENOMIC_PROFILES]: [],
+  [DataType.IMAGE]: [],
+  [DataType.NEIGHBORHOODS]: [],
+};

package/src/constant-relationships.test.js

@@ -0,0 +1,14 @@
+import { DataType } from './constants';
+import {
+  DATA_TYPE_COORDINATION_VALUE_USAGE,
+} from './constant-relationships';
+
+describe('src/app/constant-relationships.js', () => {
+  describe('DataType-to-CoordinationType usage mapping', () => {
+    it('every data type is mapped to an array of coordination types', () => {
+      const dataTypes = Object.values(DataType).sort();
+      const mappedDataTypes = Object.keys(DATA_TYPE_COORDINATION_VALUE_USAGE).sort();
+      expect(dataTypes.length).toEqual(mappedDataTypes.length);
+    });
+  });
+});