@vitessce/all 4.0.10 → 4.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{GeometryAndMeshXR-BovcVfOy.js → GeometryAndMeshXR-BSJ2rBtK.js} +1 -1
- package/dist/{ReactNeuroglancer-Ch1xO_u5.js → ReactNeuroglancer-Db7O0CnI.js} +33 -12
- package/dist/{XREnterButton-Dz4r7Jjx.js → XREnterButton-D-MyjNiM.js} +1 -1
- package/dist/{XRSceneComponents-CGcz34cr.js → XRSceneComponents-KvBqtraG.js} +1 -1
- package/dist/{XRWrapper-C1AfBFtW.js → XRWrapper-BNdj_qnt.js} +2 -2
- package/dist/{deflate-BKJk_mLF.js → deflate-B9RQRiyy.js} +1 -1
- package/dist/{higlass-BzshVp46.js → higlass-CJExboBo.js} +1 -1
- package/dist/{index-CNXTPnLt.js → index-CZ9S9EsT.js} +1 -1
- package/dist/{index-CfweEgJW.js → index-Vg2it-xm.js} +5 -5
- package/dist/{index-EoA5CfO8.js → index-uF7T9QQ9.js} +38170 -26277
- package/dist/index.js +6 -4
- package/dist/{jpeg-DXSq15HV.js → jpeg-D1J1ZLjO.js} +1 -1
- package/dist/{lerc-uTsWAc7Y.js → lerc-BYUvdCVc.js} +1 -1
- package/dist/{lzw-CIpLYaya.js → lzw-BnX_a9ES.js} +1 -1
- package/dist/{packbits-Cf0TB9M_.js → packbits-DxNVm_vW.js} +1 -1
- package/dist/{raw-CR3kVxsB.js → raw-D529ykG0.js} +1 -1
- package/dist/{webimage-Dp3HLfwF.js → webimage-D6fsjgI6.js} +1 -1
- package/dist/{xrStore-B2qW6VGJ.js → xrStore-2FzrFs3o.js} +1 -1
- package/dist-tsc/base-plugins.d.ts +20 -2
- package/dist-tsc/base-plugins.d.ts.map +1 -1
- package/dist-tsc/base-plugins.js +15 -1
- package/dist-tsc/base-plugins.js.map +1 -1
- package/dist-tsc/index.d.ts +1 -1
- package/dist-tsc/index.d.ts.map +1 -1
- package/dist-tsc/index.js +1 -1
- package/dist-tsc/index.js.map +1 -1
- package/package.json +34 -34
- package/src/base-plugins.ts +19 -1
- package/src/index.ts +2 -0
package/dist/index.js
CHANGED
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@@ -1,4 +1,4 @@
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1
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-
import { a6, a4, a2, a5, a3, a1, a9,
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1
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+
import { a6, a4, a2, a5, a3, a1, a9, ae, ad, a8, ab, ac, aa, a7 } from "./index-uF7T9QQ9.js";
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import "react/jsx-runtime";
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import "react";
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4
4
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import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
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@@ -10,10 +10,12 @@ export {
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10
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a3 as PluginViewType,
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a1 as Vitessce,
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a9 as addAnnotationControllerView,
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13
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-
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14
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-
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13
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ae as disableAnnotationEditing,
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ad as enableAnnotationEditing,
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a8 as hasAnnotationControllerView,
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-
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ab as hasAnyAnnotationStory,
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ac as isAnyAnnotationEditing,
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aa as removeAnnotationControllerView,
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useComplexCoordination,
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useComplexCoordinationSecondary,
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useCoordination,
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@@ -1,5 +1,5 @@
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1
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import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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2
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-
import {
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2
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+
import { g as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, a as LercAddCompression } from "./index-uF7T9QQ9.js";
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var LercDecode = { exports: {} };
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var hasRequiredLercDecode;
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function requireLercDecode() {
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@@ -830,7 +830,22 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
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obsLabelsTypes?: string[] | undefined;
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embeddingTypes?: string[] | undefined;
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}>>>)[];
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833
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-
export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullable<z.ZodRecord<z.ZodString, z.ZodAny>>> | PluginCoordinationType<z.ZodNullable<z.ZodString>> | PluginCoordinationType<z.ZodString> | PluginCoordinationType<z.ZodNullable<z.ZodNumber>> | PluginCoordinationType<z.ZodBoolean> | PluginCoordinationType<z.ZodNumber> | PluginCoordinationType<z.ZodEnum<["manual", "auto"]>> | PluginCoordinationType<z.ZodNullable<z.ZodBoolean>> | PluginCoordinationType<z.ZodNullable<z.
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833
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+
export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullable<z.ZodRecord<z.ZodString, z.ZodAny>>> | PluginCoordinationType<z.ZodNullable<z.ZodString>> | PluginCoordinationType<z.ZodString> | PluginCoordinationType<z.ZodNullable<z.ZodNumber>> | PluginCoordinationType<z.ZodBoolean> | PluginCoordinationType<z.ZodNumber> | PluginCoordinationType<z.ZodEnum<["manual", "auto"]>> | PluginCoordinationType<z.ZodNullable<z.ZodBoolean>> | PluginCoordinationType<z.ZodNullable<z.ZodObject<{
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position: z.ZodArray<z.ZodNumber, "many">;
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quaternion: z.ZodArray<z.ZodNumber, "many">;
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projectionScale: z.ZodNumber;
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fovDegrees: z.ZodNumber;
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}, "strip", z.ZodTypeAny, {
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position: number[];
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quaternion: number[];
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projectionScale: number;
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842
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fovDegrees: number;
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}, {
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position: number[];
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quaternion: number[];
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projectionScale: number;
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fovDegrees: number;
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}>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodObject<{
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channels: z.ZodArray<z.ZodObject<{
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color: z.ZodOptional<z.ZodArray<z.ZodNumber, "many">>;
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selection: z.ZodRecord<z.ZodString, z.ZodAny>;
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@@ -1009,12 +1024,15 @@ export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullabl
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}>, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodObject<{
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name: z.ZodString;
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color: z.ZodArray<z.ZodNumber, "many">;
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opacity: z.ZodOptional<z.ZodNumber>;
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}, "strip", z.ZodTypeAny, {
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color: number[];
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name: string;
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opacity?: number | undefined;
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}, {
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color: number[];
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name: string;
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opacity?: number | undefined;
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}>, "many">>> | PluginCoordinationType<z.ZodEnum<["geneSelection", "cellSetSelection", "spatialChannelColor", "spatialLayerColor", "obsLabels", "obsColors", "random", "randomByFeature"]>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodEnum<["first", "last", "mean", "sum", "difference"]>, z.ZodNumber]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureSelection", "featureSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureFilter", "featureSetFilter", "featureSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["log1p", "arcsinh"]>>> | PluginCoordinationType<z.ZodArray<z.ZodNumber, "many">> | PluginCoordinationType<z.ZodNullable<z.ZodEffects<z.ZodUnion<[z.ZodObject<{
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version: z.ZodLiteral<"0.1.3">;
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tree: z.ZodArray<z.ZodType<{
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@@ -1174,7 +1192,7 @@ export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullabl
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color?: number[] | undefined;
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}>;
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})[];
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-
}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>> | PluginCoordinationType<z.ZodEnum<["original", "alphabetical"]>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleSelection", "sampleSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleFilter", "sampleSetFilter"]>>> | PluginCoordinationType<z.ZodEnum<["cellSetSelection", "sampleSetSelection", "contourColor"]>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodEnum<["sampleSet", "obsSet"]>, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodObject<{
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}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["all", "selected"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>> | PluginCoordinationType<z.ZodEnum<["original", "alphabetical"]>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleSelection", "sampleSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleFilter", "sampleSetFilter"]>>> | PluginCoordinationType<z.ZodEnum<["cellSetSelection", "sampleSetSelection", "contourColor"]>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodEnum<["sampleSet", "obsSet"]>, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodObject<{
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uid: z.ZodString;
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title: z.ZodOptional<z.ZodString>;
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description: z.ZodOptional<z.ZodString>;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAyDF,MAAM,mBAAmB,CAAC;AAyL3B,eAAO,MAAM,aAAa,kBAiCzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAgFzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
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{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAyDF,MAAM,mBAAmB,CAAC;AAyL3B,eAAO,MAAM,aAAa,kBAiCzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAgFzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAmH3B,CAAC;gCAGG,CAAC;;;yBAA8E,CAAC;gCAClE,CAAC;;;;;;;;;;;;;;;;iBAqBnB,CAAF;;;;iBAMM,CAAC;;;;;;;YAIiB,CAAC;;;YAGmB,CAAC;;;;;;;YAK3C,CAAD;;;YAE0B,CAAC;;;;;;;YAOlB,CAAC;;;YAEP,CAAC;;;;;;;;;;;;;;YASuG,CAAC;;;YACrF,CAAC;;;;;;;;YAWH,CAAC;;;;YAKjB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAwBL,CAAC;gCAAsD,CAAC;;;;;;;;iBAGb,CAAC;;;;YACG,CAAC;;;;YACL,CAAC;;;;YACE,CAAC;;;;;;;YAEX,CAAC;;;;YACQ,CAAC;;;;;;;;;;;;;;;;;;;;yBAIuC,CAAC;gCACxC,CAAC;;;;;;;;iBAGpC,CAAC;;;;YAA8F,CAAC;;;;YAClB,CAAC;;;;YAClC,CAAC;;;;;;;YACoC,CAAC;;;;YACzB,CAAC;;;;;;;;;;;wBA4E2Y,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;iBAA+X,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;;;;;;;;;;;;;;;;;wBAAmoB,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;wBAA6R,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAjmBxpQ,CAAC;;;;;qBAGiB,CAAC;qBACX,CAAC;;;;;;;;;qBAG4B,CAAC;6BAClB,CAAC;;sBACzB,CAAC;;;;;qBAEyD,CAAC;qBAG9D,CAAF;;;;;;;;;qBAQiB,CAAC;6BACW,CAAC;;;;;;;;;;;;;kBA4BG,CAAC;mBACC,CAAC;gBAEhB,CAAC;gBACK,CAAC;uBAEzB,CAAC;iBACE,CAAC;oBACQ,CAAC;oBAGL,CAAC;qBAEP,CAAC;;kBACmB,CAAC;mBAEb,CAAC;gBAEJ,CAAC;gBACK,CAAC;uBAEL,CAAC;iBACS,CAAC;oBAEb,CAAC;oBACO,CAAC;qBAEhB,CAAD;;;;;;gBAMwB,CAAC;sBACH,CAAC;;;;;qBAWlB,CAAC;qBACiB,CAAC;;;;;;;;;qBAShB,CAAC;6BAGV,CAAC;;mBAGG,CAAC;kBACK,CAAC;mBAGT,CAAA;gBAGa,CAAC;gBAES,CAAC;uBAEhB,CAAC;iBACO,CAAC;oBAEf,CAAC;oBAED,CAAC;qBACyB,CAAC;;;;;;gBAO3B,CAAC;sBACA,CAAC;;;;;qBAQS,CAAC;qBACqB,CAAC;;;;;;;;;qBAM0C,CAAC;6BAGlD,CAAC;;mBAAgE,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAC5H,CAAC;gBAAsC,CAAC;uBAE/D,CAAC;iBAAuC,CAAC;oBAC1C,CAAC;oBACf,CAAC;qBAA2C,CAAC;;;;;;;;;gBAGzC,CAAH;sBAA0B,CAAC;;;;;qBAIH,CAAC;qBACnB,CAAC;;;;;;;;;qBAG+G,CAAC;6BAMrH,CAAC;;mBACG,CAAC;kBAAsB,CAAC;mBACpB,CAAC;gBAAmD,CAAC;gBAChC,CAAC;uBAC/B,CAAF;iBAAuC,CAAC;oBACT,CAAC;oBACX,CAAC;qBACnB,CAAC;;;;;;;;;;;gBAIS,CAAC;sBAA0B,CAAC;;;;;qBAGZ,CAAC;qBAA4C,CAAC;;;;;;;;;qBAKzE,CAAD;6BAAoD,CAAC;;mBACE,CAAC;kBACrD,CAAC;mBAAyC,CAAC;gBAChC,CAAC;gBAAsC,CAAC;uBACzB,CAAC;iBAAuC,CAAC;oBACnC,CAAC;oBAC1B,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OA6GvD,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;aAhYtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEN,CAAC;eACa,CAAC;;;;;;;;;;;;;;;;;;;aAgCR,CAAC;cACS,CAAC;eAEnB,CAAC;;;;;;;;;;;;;;;;;;;aAsBiC,CAAC;cAC3B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAtEvC,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEN,CAAC;eACa,CAAC;;;;;;;;;;;;;;;;;;;aAgCR,CAAC;cACS,CAAC;eAEnB,CAAC;;;;;;;;;;;;;;;;;;;aAsBiC,CAAC;cAC3B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;8BAgQmC,CAAA;;;8BACJ,CAAC;;;;aAC9C,CAAC;mBAA0C,CAAA;uBAA6C,CAAC;cAC/G,CAAC;;8BAC+B,CAAC;;;;aAClC,CAAC;mBAA0C,CAAA;uBAA6C,CAAC;cAAiD,CAAC;;8BACvG,CAAC;;;;;;;aACX,CAAC;mBAAyC,CAAC;uBAA6C,CAAC;cAC/G,CAAC;;8BAA2D,CAAC;;;;;;;;;;aACoG,CAAC;mBACpJ,CAAC;uBAA6C,CAAC;cAAiD,CAAC;;8BAChG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBA6UjC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}
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package/dist-tsc/base-plugins.js
CHANGED
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@@ -238,6 +238,17 @@ export const baseCoordinationTypes = [
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new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_ORBIT, 0, z.number().nullable()),
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new PluginCoordinationType(CoordinationType.SPATIAL_ORBIT_AXIS, 'Y', z.string().nullable()),
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new PluginCoordinationType(CoordinationType.SPATIAL_AXIS_FIXED, false, z.boolean().nullable()),
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// A raw 3D camera state, shared between spatialBeta and neuroglancer views.
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// A non-null value indicates that both views are present and should be synchronized.
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new PluginCoordinationType(CoordinationType.SPATIAL_CAMERA_SNAPSHOT, null, z.object({
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// Orbit target / pivot point.
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position: z.array(z.number()).length(3),
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// Camera orientation [x, y, z, w], in the Y-up frame used by spatialBeta.
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quaternion: z.array(z.number()).length(4),
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// Height of the visible region at the pivot (Neuroglancer's projectionScale).
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projectionScale: z.number(),
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fovDegrees: z.number(),
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}).nullable()),
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new PluginCoordinationType(CoordinationType.SPATIAL_IMAGE_LAYER, null, imageLayerObj.nullable()),
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new PluginCoordinationType(CoordinationType.SPATIAL_SEGMENTATION_LAYER, null, z.union([
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cellsLayerObj, imageLayerObj,
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@@ -264,6 +275,7 @@ export const baseCoordinationTypes = [
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new PluginCoordinationType(CoordinationType.FEATURE_COLOR, null, z.array(z.object({
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name: z.string(),
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color: rgbArray,
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opacity: z.number().min(0).max(1).optional(),
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})).nullable()),
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new PluginCoordinationType(CoordinationType.OBS_COLOR_ENCODING, 'cellSetSelection', z.enum([
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281
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'geneSelection', 'cellSetSelection', 'spatialChannelColor', 'spatialLayerColor', 'obsLabels',
|
|
@@ -311,6 +323,7 @@ export const baseCoordinationTypes = [
|
|
|
311
323
|
new PluginCoordinationType(CoordinationType.SPATIAL_TARGET_T, null, z.number().nullable()),
|
|
312
324
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_VISIBLE, true, z.boolean()),
|
|
313
325
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_OPACITY, 1.0, z.number()),
|
|
326
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_OPACITY_UNSELECTED, 0.25, z.number().min(0).max(1)),
|
|
314
327
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_COLORMAP, null, z.string().nullable()), // TODO: enum to be more strict
|
|
315
328
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR, null, z.array(z.number()).length(3).nullable()),
|
|
316
329
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_MODEL_MATRIX, null, z.array(z.number()).length(16).nullable()),
|
|
@@ -339,6 +352,7 @@ export const baseCoordinationTypes = [
|
|
|
339
352
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_COLOR, null, z.array(z.number()).length(3).nullable()),
|
|
340
353
|
new PluginCoordinationType(CoordinationType.PIXEL_HIGHLIGHT, null, z.array(z.number()).length(3).nullable()),
|
|
341
354
|
new PluginCoordinationType(CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE, true, z.boolean()),
|
|
355
|
+
new PluginCoordinationType(CoordinationType.TOOLTIP_OBS_SETS_MODE, 'all', z.enum(['all', 'selected'])),
|
|
342
356
|
new PluginCoordinationType(CoordinationType.LEGEND_VISIBLE, true, z.boolean()),
|
|
343
357
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
|
|
344
358
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
|
|
@@ -374,7 +388,7 @@ export const baseCoordinationTypes = [
|
|
|
374
388
|
new PluginCoordinationType(CoordinationType.ANNOTATION_SHAPES, null, annotationShapesArray.nullable()),
|
|
375
389
|
new PluginCoordinationType(CoordinationType.ANNOTATION_FRAME_INDEX, null, z.number().nullable()),
|
|
376
390
|
new PluginCoordinationType(CoordinationType.ANNOTATION_OVERLAY_VISIBLE, true, z.boolean()),
|
|
377
|
-
new PluginCoordinationType(CoordinationType.ANNOTATION_TRANSITION_DURATION,
|
|
391
|
+
new PluginCoordinationType(CoordinationType.ANNOTATION_TRANSITION_DURATION, 500, z.number()), // TODO: make this non-zero by default?
|
|
378
392
|
new PluginCoordinationType(CoordinationType.ANNOTATION_SEMANTIC_ZOOM, true, z.boolean()),
|
|
379
393
|
new PluginCoordinationType(CoordinationType.ANNOTATION_EDITABLE, false, z.boolean()),
|
|
380
394
|
];
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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|
package/dist-tsc/index.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
export { Vitessce } from './Vitessce.js';
|
|
2
2
|
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, PluginAsyncFunction, } from '@vitessce/plugins';
|
|
3
3
|
export { z } from '@vitessce/schemas';
|
|
4
|
-
export { hasAnnotationControllerView, addAnnotationControllerView, isAnyAnnotationEditing, enableAnnotationEditing, disableAnnotationEditing, } from '@vitessce/annotation-controller';
|
|
4
|
+
export { hasAnnotationControllerView, addAnnotationControllerView, removeAnnotationControllerView, hasAnyAnnotationStory, isAnyAnnotationEditing, enableAnnotationEditing, disableAnnotationEditing, } from '@vitessce/annotation-controller';
|
|
5
5
|
export { useCoordination, useGridItemSize, usePageModeView, useComplexCoordination, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, useComplexCoordinationSecondary, useCoordinationScopes, useCoordinationScopesBy, } from '@vitessce/vit-s';
|
|
6
6
|
//# sourceMappingURL=index.d.ts.map
|
package/dist-tsc/index.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,wBAAwB,GACzB,MAAM,iCAAiC,CAAC;AACzC,OAAO,EACL,eAAe,EACf,eAAe,EACf,eAAe,EAIf,sBAAsB,EACtB,iCAAiC,EACjC,0CAA0C,EAC1C,+BAA+B,EAC/B,qBAAqB,EACrB,uBAAuB,GACxB,MAAM,iBAAiB,CAAC"}
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,8BAA8B,EAC9B,qBAAqB,EACrB,sBAAsB,EACtB,uBAAuB,EACvB,wBAAwB,GACzB,MAAM,iCAAiC,CAAC;AACzC,OAAO,EACL,eAAe,EACf,eAAe,EACf,eAAe,EAIf,sBAAsB,EACtB,iCAAiC,EACjC,0CAA0C,EAC1C,+BAA+B,EAC/B,qBAAqB,EACrB,uBAAuB,GACxB,MAAM,iBAAiB,CAAC"}
|
package/dist-tsc/index.js
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
export { Vitessce } from './Vitessce.js';
|
|
2
2
|
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, PluginAsyncFunction, } from '@vitessce/plugins';
|
|
3
3
|
export { z } from '@vitessce/schemas';
|
|
4
|
-
export { hasAnnotationControllerView, addAnnotationControllerView, isAnyAnnotationEditing, enableAnnotationEditing, disableAnnotationEditing, } from '@vitessce/annotation-controller';
|
|
4
|
+
export { hasAnnotationControllerView, addAnnotationControllerView, removeAnnotationControllerView, hasAnyAnnotationStory, isAnyAnnotationEditing, enableAnnotationEditing, disableAnnotationEditing, } from '@vitessce/annotation-controller';
|
|
5
5
|
export { useCoordination, useGridItemSize, usePageModeView,
|
|
6
6
|
// TODO: names and function signatures are subject to change
|
|
7
7
|
// for the following functions
|
package/dist-tsc/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,sBAAsB,EACtB,uBAAuB,EACvB,wBAAwB,GACzB,MAAM,iCAAiC,CAAC;AACzC,OAAO,EACL,eAAe,EACf,eAAe,EACf,eAAe;AACf,4DAA4D;AAC5D,8BAA8B;AAC9B,+FAA+F;AAC/F,sBAAsB,EACtB,iCAAiC,EACjC,0CAA0C,EAC1C,+BAA+B,EAC/B,qBAAqB,EACrB,uBAAuB,GACxB,MAAM,iBAAiB,CAAC"}
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EACL,2BAA2B,EAC3B,2BAA2B,EAC3B,8BAA8B,EAC9B,qBAAqB,EACrB,sBAAsB,EACtB,uBAAuB,EACvB,wBAAwB,GACzB,MAAM,iCAAiC,CAAC;AACzC,OAAO,EACL,eAAe,EACf,eAAe,EACf,eAAe;AACf,4DAA4D;AAC5D,8BAA8B;AAC9B,+FAA+F;AAC/F,sBAAsB,EACtB,iCAAiC,EACjC,0CAA0C,EAC1C,+BAA+B,EAC/B,qBAAqB,EACrB,uBAAuB,GACxB,MAAM,iBAAiB,CAAC"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@vitessce/all",
|
|
3
|
-
"version": "4.
|
|
3
|
+
"version": "4.1.1",
|
|
4
4
|
"author": "HIDIVE Lab at HMS",
|
|
5
5
|
"homepage": "http://vitessce.io",
|
|
6
6
|
"repository": {
|
|
@@ -17,39 +17,39 @@
|
|
|
17
17
|
],
|
|
18
18
|
"dependencies": {
|
|
19
19
|
"zod": "^3.21.4",
|
|
20
|
-
"@vitessce/styles": "4.
|
|
21
|
-
"@vitessce/
|
|
22
|
-
"@vitessce/
|
|
23
|
-
"@vitessce/error": "4.
|
|
24
|
-
"@vitessce/
|
|
25
|
-
"@vitessce/
|
|
26
|
-
"@vitessce/
|
|
27
|
-
"@vitessce/
|
|
28
|
-
"@vitessce/
|
|
29
|
-
"@vitessce/
|
|
30
|
-
"@vitessce/
|
|
31
|
-
"@vitessce/layer-controller": "4.
|
|
32
|
-
"@vitessce/
|
|
33
|
-
"@vitessce/
|
|
34
|
-
"@vitessce/
|
|
35
|
-
"@vitessce/
|
|
36
|
-
"@vitessce/
|
|
37
|
-
"@vitessce/
|
|
38
|
-
"@vitessce/
|
|
39
|
-
"@vitessce/scatterplot-gating": "4.
|
|
40
|
-
"@vitessce/schemas": "4.
|
|
41
|
-
"@vitessce/spatial": "4.
|
|
42
|
-
"@vitessce/
|
|
43
|
-
"@vitessce/
|
|
44
|
-
"@vitessce/
|
|
45
|
-
"@vitessce/
|
|
46
|
-
"@vitessce/
|
|
47
|
-
"@vitessce/globals": "4.
|
|
48
|
-
"@vitessce/spatial-zarr": "4.
|
|
49
|
-
"@vitessce/spatial-three": "4.
|
|
50
|
-
"@vitessce/
|
|
51
|
-
"@vitessce/biomarker-select": "4.
|
|
52
|
-
"@vitessce/
|
|
20
|
+
"@vitessce/styles": "4.1.1",
|
|
21
|
+
"@vitessce/constants-internal": "4.1.1",
|
|
22
|
+
"@vitessce/abstract": "4.1.1",
|
|
23
|
+
"@vitessce/error": "4.1.1",
|
|
24
|
+
"@vitessce/description": "4.1.1",
|
|
25
|
+
"@vitessce/genomic-profiles": "4.1.1",
|
|
26
|
+
"@vitessce/csv": "4.1.1",
|
|
27
|
+
"@vitessce/heatmap": "4.1.1",
|
|
28
|
+
"@vitessce/glb": "4.1.1",
|
|
29
|
+
"@vitessce/feature-list": "4.1.1",
|
|
30
|
+
"@vitessce/annotation-controller": "4.1.1",
|
|
31
|
+
"@vitessce/layer-controller-beta": "4.1.1",
|
|
32
|
+
"@vitessce/json": "4.1.1",
|
|
33
|
+
"@vitessce/link-controller": "4.1.1",
|
|
34
|
+
"@vitessce/obs-sets-manager": "4.1.1",
|
|
35
|
+
"@vitessce/layer-controller": "4.1.1",
|
|
36
|
+
"@vitessce/plugins": "4.1.1",
|
|
37
|
+
"@vitessce/scatterplot-embedding": "4.1.1",
|
|
38
|
+
"@vitessce/ome-tiff": "4.1.1",
|
|
39
|
+
"@vitessce/scatterplot-gating": "4.1.1",
|
|
40
|
+
"@vitessce/schemas": "4.1.1",
|
|
41
|
+
"@vitessce/spatial": "4.1.1",
|
|
42
|
+
"@vitessce/spatial-beta": "4.1.1",
|
|
43
|
+
"@vitessce/statistical-plots": "4.1.1",
|
|
44
|
+
"@vitessce/vit-s": "4.1.1",
|
|
45
|
+
"@vitessce/status": "4.1.1",
|
|
46
|
+
"@vitessce/zarr": "4.1.1",
|
|
47
|
+
"@vitessce/globals": "4.1.1",
|
|
48
|
+
"@vitessce/spatial-zarr": "4.1.1",
|
|
49
|
+
"@vitessce/spatial-three": "4.1.1",
|
|
50
|
+
"@vitessce/spatial-accelerated": "4.1.1",
|
|
51
|
+
"@vitessce/biomarker-select": "4.1.1",
|
|
52
|
+
"@vitessce/neuroglancer": "4.1.1"
|
|
53
53
|
},
|
|
54
54
|
"devDependencies": {
|
|
55
55
|
"@types/react": "^19.0.0",
|
package/src/base-plugins.ts
CHANGED
|
@@ -447,6 +447,21 @@ export const baseCoordinationTypes = [
|
|
|
447
447
|
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_ORBIT, 0, z.number().nullable()),
|
|
448
448
|
new PluginCoordinationType(CoordinationType.SPATIAL_ORBIT_AXIS, 'Y', z.string().nullable()),
|
|
449
449
|
new PluginCoordinationType(CoordinationType.SPATIAL_AXIS_FIXED, false, z.boolean().nullable()),
|
|
450
|
+
// A raw 3D camera state, shared between spatialBeta and neuroglancer views.
|
|
451
|
+
// A non-null value indicates that both views are present and should be synchronized.
|
|
452
|
+
new PluginCoordinationType(
|
|
453
|
+
CoordinationType.SPATIAL_CAMERA_SNAPSHOT,
|
|
454
|
+
null,
|
|
455
|
+
z.object({
|
|
456
|
+
// Orbit target / pivot point.
|
|
457
|
+
position: z.array(z.number()).length(3),
|
|
458
|
+
// Camera orientation [x, y, z, w], in the Y-up frame used by spatialBeta.
|
|
459
|
+
quaternion: z.array(z.number()).length(4),
|
|
460
|
+
// Height of the visible region at the pivot (Neuroglancer's projectionScale).
|
|
461
|
+
projectionScale: z.number(),
|
|
462
|
+
fovDegrees: z.number(),
|
|
463
|
+
}).nullable(),
|
|
464
|
+
),
|
|
450
465
|
new PluginCoordinationType(CoordinationType.SPATIAL_IMAGE_LAYER, null, imageLayerObj.nullable()),
|
|
451
466
|
new PluginCoordinationType(
|
|
452
467
|
CoordinationType.SPATIAL_SEGMENTATION_LAYER,
|
|
@@ -504,6 +519,7 @@ export const baseCoordinationTypes = [
|
|
|
504
519
|
z.array(z.object({
|
|
505
520
|
name: z.string(),
|
|
506
521
|
color: rgbArray,
|
|
522
|
+
opacity: z.number().min(0).max(1).optional(),
|
|
507
523
|
})).nullable(),
|
|
508
524
|
),
|
|
509
525
|
new PluginCoordinationType(
|
|
@@ -600,6 +616,7 @@ export const baseCoordinationTypes = [
|
|
|
600
616
|
new PluginCoordinationType(CoordinationType.SPATIAL_TARGET_T, null, z.number().nullable()),
|
|
601
617
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_VISIBLE, true, z.boolean()),
|
|
602
618
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_OPACITY, 1.0, z.number()),
|
|
619
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_OPACITY_UNSELECTED, 0.25, z.number().min(0).max(1)),
|
|
603
620
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_COLORMAP, null, z.string().nullable()), // TODO: enum to be more strict
|
|
604
621
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR, null, z.array(z.number()).length(3).nullable()),
|
|
605
622
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_MODEL_MATRIX, null, z.array(z.number()).length(16).nullable()),
|
|
@@ -628,6 +645,7 @@ export const baseCoordinationTypes = [
|
|
|
628
645
|
new PluginCoordinationType(CoordinationType.SPATIAL_LAYER_COLOR, null, z.array(z.number()).length(3).nullable()),
|
|
629
646
|
new PluginCoordinationType(CoordinationType.PIXEL_HIGHLIGHT, null, z.array(z.number()).length(3).nullable()),
|
|
630
647
|
new PluginCoordinationType(CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE, true, z.boolean()),
|
|
648
|
+
new PluginCoordinationType(CoordinationType.TOOLTIP_OBS_SETS_MODE, 'all', z.enum(['all', 'selected'])),
|
|
631
649
|
new PluginCoordinationType(CoordinationType.LEGEND_VISIBLE, true, z.boolean()),
|
|
632
650
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
|
|
633
651
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
|
|
@@ -667,7 +685,7 @@ export const baseCoordinationTypes = [
|
|
|
667
685
|
new PluginCoordinationType(CoordinationType.ANNOTATION_SHAPES, null, annotationShapesArray.nullable()),
|
|
668
686
|
new PluginCoordinationType(CoordinationType.ANNOTATION_FRAME_INDEX, null, z.number().nullable()),
|
|
669
687
|
new PluginCoordinationType(CoordinationType.ANNOTATION_OVERLAY_VISIBLE, true, z.boolean()),
|
|
670
|
-
new PluginCoordinationType(CoordinationType.ANNOTATION_TRANSITION_DURATION,
|
|
688
|
+
new PluginCoordinationType(CoordinationType.ANNOTATION_TRANSITION_DURATION, 500, z.number()), // TODO: make this non-zero by default?
|
|
671
689
|
new PluginCoordinationType(CoordinationType.ANNOTATION_SEMANTIC_ZOOM, true, z.boolean()),
|
|
672
690
|
new PluginCoordinationType(CoordinationType.ANNOTATION_EDITABLE, false, z.boolean()),
|
|
673
691
|
];
|
package/src/index.ts
CHANGED