@vitessce/all 4.0.10 → 4.1.1

package/dist/{GeometryAndMeshXR-BovcVfOy.js → GeometryAndMeshXR-BSJ2rBtK.js}

@@ -3,7 +3,7 @@ import { useRef, useEffect, useState } from "react";
 import { useThree, useFrame } from "@react-three/fiber";
 import { Bvh } from "@react-three/drei";
 import { Matrix4, Vector3, Box3, FrontSide } from "three";
-import { g as getXRModule, i as isValidGeometrySize, M as MeasureLine, s as stringifyLineData } from "./index-CfweEgJW.js";
+import { g as getXRModule, i as isValidGeometrySize, M as MeasureLine, s as stringifyLineData } from "./index-Vg2it-xm.js";
 function getHandJoint(hand, jointName) {
   return hand.get(jointName);
 }

package/dist/{ReactNeuroglancer-Ch1xO_u5.js → ReactNeuroglancer-Db7O0CnI.js}

@@ -1,6 +1,6 @@
 import { jsx, jsxs } from "react/jsx-runtime";
 import React__default from "react";
-import { a as getDefaultExportFromCjs, d as requireAssign, f as require_export, h as require_core, j as require_fails, k as require_toObject, m as require_objectKeys, n as require_cof, o as require_wks, p as require_iterators, q as requireWeb_dom_iterable, s as requireEs6_string_iterator, t as require_anObject, v as require_hide, w as require_ctx, x as require_toLength, y as require_global, z as require_objectDp, A as require_descriptors, D as require_isObject, E as require_objectCreate, F as require_iterDefine, G as require_iterStep, H as require_meta, I as require_isArray, J as require_iobject, K as require_setToStringTag, M as require_aFunction, N as requireIterator, O as require_propertyDesc, c as commonjsGlobal, P as requireEs6_symbol, Q as requireDefineProperty, R as require_toIobject, S as require_objectGopd, T as require_html, U as require_domCreate, V as require_library, W as requireSymbol, X as require_objectPie, Y as require_has, Z as require_redefine, _ as require_objectAssign, $ as GREY_HEX, a0 as diffCameraState } from "./index-EoA5CfO8.js";
+import { g as getDefaultExportFromCjs, d as requireAssign, f as require_export, h as require_core, j as require_fails, k as require_toObject, m as require_objectKeys, n as require_cof, o as require_wks, p as require_iterators, q as requireWeb_dom_iterable, s as requireEs6_string_iterator, t as require_anObject, v as require_hide, w as require_ctx, x as require_toLength, y as require_global, z as require_objectDp, A as require_descriptors, D as require_isObject, E as require_objectCreate, F as require_iterDefine, G as require_iterStep, H as require_meta, I as require_isArray, J as require_iobject, K as require_setToStringTag, M as require_aFunction, N as requireIterator, O as require_propertyDesc, c as commonjsGlobal, P as requireEs6_symbol, Q as requireDefineProperty, R as require_toIobject, S as require_objectGopd, T as require_html, U as require_domCreate, V as require_library, W as requireSymbol, X as require_objectPie, Y as require_has, Z as require_redefine, _ as require_objectAssign, $ as GREY_HEX, a0 as diffCameraState } from "./index-uF7T9QQ9.js";
 var assignExports = requireAssign();
 const _Object$assign = /* @__PURE__ */ getDefaultExportFromCjs(assignExports);
 var es6_object_keys = {};
@@ -65461,6 +65461,7 @@ class Neuroglancer extends React__default.Component {
     this.prevColorOverrides = /* @__PURE__ */ new Set();
     this.overrideColorsById = /* @__PURE__ */ Object.create(null);
     this.allKnownIdsByLayer = {};
+    this.lastAppliedCameraState = null;
   }
   minimalPoseSnapshot = () => {
     const v = this.viewer;
@@ -65638,7 +65639,7 @@ class Neuroglancer extends React__default.Component {
     const { visibleChunksChanged } = this.viewer.chunkQueueManager;
     let firstChunkLoaded = false;
     const checkAndMarkLoaded = () => {
-      if (firstChunkLoaded)
+      if (firstChunkLoaded || !this.viewer)
         return false;
       for (const layer of this.viewer.layerManager.managedLayers) {
         if (layer.layer instanceof SegmentationUserLayer) {
@@ -65687,17 +65688,16 @@ class Neuroglancer extends React__default.Component {
       return false;
     };
     this.disposers.push(visibleChunksChanged.add(checkAndMarkLoaded));
-    setTimeout(() => {
+    const timeoutId1 = setTimeout(() => {
       if (!firstChunkLoaded)
         checkAndMarkLoaded();
     }, 100);
-    setTimeout(() => {
+    const timeoutId2 = setTimeout(() => {
       if (!firstChunkLoaded)
         checkAndMarkLoaded();
     }, 1e3);
-    this.disposers.push(() => {
-      firstChunkLoaded = false;
-    });
+    this.disposers.push(() => clearTimeout(timeoutId1));
+    this.disposers.push(() => clearTimeout(timeoutId2));
     document.addEventListener("wheel", (e) => {
       if (e.ctrlKey)
         e.preventDefault();
@@ -65755,7 +65755,7 @@ class Neuroglancer extends React__default.Component {
     const prevVS = prevProps.viewerState;
     const prevLayers = prevProps.viewerState?.layers;
     const nextLayers = viewerState?.layers;
-    const camState = diffCameraState(prevVS, viewerState);
+    const camState = diffCameraState(this.lastAppliedCameraState ?? prevVS, viewerState);
     if (camState.changed) {
       const patch = {};
       if (camState.scale) {
@@ -65768,6 +65768,11 @@ class Neuroglancer extends React__default.Component {
       if (camState.rot)
         patch.projectionOrientation = viewerState.projectionOrientation;
       this.withoutEmitting(() => this.viewer.state.restoreState(patch));
+      this.lastAppliedCameraState = {
+        position: viewerState.position,
+        projectionOrientation: viewerState.projectionOrientation,
+        projectionScale: viewerState.projectionScale
+      };
     }
     if (this.didLayersChange(prevVS, viewerState)) {
       this.withoutEmitting(() => {
@@ -65791,10 +65796,22 @@ class Neuroglancer extends React__default.Component {
         this.applyColorsAndVisibility(cellColorMappingByLayer);
       });
     }
-    const prevSegIds = prevLayers?.[0]?.segments ?? [];
-    const nextSegIds = nextLayers?.[0]?.segments ?? [];
-    const segmentsChanged = prevSegIds.length !== nextSegIds.length || prevSegIds[0] !== nextSegIds[0] || prevSegIds[prevSegIds.length - 1] !== nextSegIds[nextSegIds.length - 1];
-    if (segmentsChanged && nextSegIds.length > 0) {
+    const prevSegLayers = (prevLayers ?? []).filter((l) => l.type === "segmentation");
+    const nextSegLayers = (nextLayers ?? []).filter((l) => l.type === "segmentation");
+    const segIdsChangedForLayer = (name2) => {
+      const prevIds = prevSegLayers.find((l) => l.name === name2)?.segments ?? [];
+      const nextIds = nextSegLayers.find((l) => l.name === name2)?.segments ?? [];
+      if (prevIds.length !== nextIds.length)
+        return true;
+      return prevIds.some((id, i) => String(id) !== String(nextIds[i]));
+    };
+    const allSegLayerNames = /* @__PURE__ */ new Set([
+      ...prevSegLayers.map((l) => l.name),
+      ...nextSegLayers.map((l) => l.name)
+    ]);
+    const segmentsChanged = [...allSegLayerNames].some(segIdsChangedForLayer);
+    const nextSegIds = nextSegLayers.flatMap((l) => l.segments ?? []);
+    if (segmentsChanged && (nextSegIds.length > 0 || this.props.allowEmptySegments)) {
       this.preserveDimensions(() => {
         this.viewer.state.restoreState({ layers: nextLayers });
       });
@@ -65809,6 +65826,10 @@ class Neuroglancer extends React__default.Component {
       }
     });
     this.disposers = [];
+    if (this.viewer) {
+      this.viewer.dispose();
+      this.viewer = null;
+    }
     const { key } = this.props;
     if (key) {
       delete viewersKeyed[key];

package/dist/{XREnterButton-Dz4r7Jjx.js → XREnterButton-D-MyjNiM.js}

@@ -1,6 +1,6 @@
 import { jsx } from "react/jsx-runtime";
 import { useState, useEffect } from "react";
-import { g as getXrStore } from "./xrStore-B2qW6VGJ.js";
+import { g as getXrStore } from "./xrStore-2FzrFs3o.js";
 function XREnterButton() {
   const [supported, setSupported] = useState(false);
   const [entered, setEntered] = useState(false);

package/dist/{XRSceneComponents-CGcz34cr.js → XRSceneComponents-KvBqtraG.js}

@@ -1,7 +1,7 @@
 import { jsxs, Fragment, jsx } from "react/jsx-runtime";
 import { useRef } from "react";
 import { useThree, useFrame } from "@react-three/fiber";
-import { g as getXRModule } from "./index-CfweEgJW.js";
+import { g as getXRModule } from "./index-Vg2it-xm.js";
 function getHandJoint(hand, jointName) {
   return hand.get(jointName);
 }

package/dist/{XRWrapper-C1AfBFtW.js → XRWrapper-BNdj_qnt.js}

@@ -1,6 +1,6 @@
 import { jsx } from "react/jsx-runtime";
-import { g as getXRModule } from "./index-CfweEgJW.js";
-import { g as getXrStore } from "./xrStore-B2qW6VGJ.js";
+import { g as getXRModule } from "./index-Vg2it-xm.js";
+import { g as getXrStore } from "./xrStore-2FzrFs3o.js";
 function XRWrapper({ children }) {
   const { XR } = getXRModule();
   return jsx(XR, { store: getXrStore(), children });

package/dist/{deflate-BKJk_mLF.js → deflate-B9RQRiyy.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-EoA5CfO8.js";
+import { B as BaseDecoder } from "./index-uF7T9QQ9.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{higlass-BzshVp46.js → higlass-CJExboBo.js}

@@ -1,6 +1,6 @@
 import * as React from "react";
 import React__default, { createContext, isValidElement, PureComponent, Component, useMemo, useState, useRef, useEffect, useCallback, memo, useContext, useReducer, useLayoutEffect } from "react";
-import { r as requireObjectAssign, a as getDefaultExportFromCjs$1, c as commonjsGlobal, e as earcut } from "./index-EoA5CfO8.js";
+import { r as requireObjectAssign, g as getDefaultExportFromCjs$1, c as commonjsGlobal, e as earcut } from "./index-uF7T9QQ9.js";
 import ReactDOM__default, { unstable_batchedUpdates, createPortal } from "react-dom";
 import { jsx, jsxs } from "react/jsx-runtime";
 function finallyConstructor(callback) {

package/dist/{index-CNXTPnLt.js → index-CZ9S9EsT.js}

@@ -4,7 +4,7 @@ import { useThree, useFrame, Canvas } from "@react-three/fiber";
 import { OrbitControls } from "@react-three/drei";
 import * as THREE from "three";
 import { Data3DTexture, RedFormat, UnsignedByteType, LinearFilter, RedIntegerFormat, UnsignedIntType, NearestFilter, Vector3, Vector2, Vector4, UniformsUtils } from "three";
-import { l as log, i as isEqual, C as CoordinationType, u as useEventCallback } from "./index-EoA5CfO8.js";
+import { l as log, i as isEqual, C as CoordinationType, u as useEventCallback } from "./index-uF7T9QQ9.js";
 const LogLevel = {
   INFO: "info",
   WARN: "warn",

package/dist/{index-CfweEgJW.js → index-Vg2it-xm.js}

@@ -3,7 +3,7 @@ import React__default, { useRef, useState, useEffect, Suspense, forwardRef } fro
 import { Canvas } from "@react-three/fiber";
 import { Center, Text, Line, Bvh, OrbitControls } from "@react-three/drei";
 import { Matrix3, Matrix4, Vector3, Vector2, UniformsUtils, Data3DTexture, RedFormat, FloatType, LinearFilter, FrontSide, Scene, Group, MeshPhysicalMaterial, MeshBasicMaterial, MeshStandardMaterial, BackSide } from "three";
-import { C as CoordinationType, g as getImageSize } from "./index-EoA5CfO8.js";
+import { C as CoordinationType, b as getImageSize } from "./index-uF7T9QQ9.js";
 function MeasureLine({ currentLine, scale }) {
   const textRef = useRef(null);
   return jsxs("group", { children: [jsx(Center, { bottom: true, right: true, position: [currentLine.midPoint.x, currentLine.midPoint.y, currentLine.midPoint.z], rotation: [0, 0, 0], children: jsx(Text, { color: "gray", scale: 0.05, ref: textRef, children: `${(currentLine.startPoint.distanceTo(currentLine.endPoint) * scale).toFixed(2)} µm` }) }), jsx(Line, {
@@ -945,8 +945,8 @@ function GeometryAndMesh(props) {
     setObsHighlight(e.object.name);
   }, onPointerOut: () => setObsHighlight(null) }) })] }) : null, renderingSettings.uniforms && renderingSettings.shader && renderingSettings.meshScale && renderingSettings.geometrySize ? jsx("group", { children: jsxs("mesh", { scale: renderingSettings.meshScale, ref: materialRef, children: [jsx("boxGeometry", { args: renderingSettings.geometrySize }), jsx("shaderMaterial", { customProgramCacheKey: () => "1", side: FrontSide, uniforms: renderingSettings.uniforms, needsUpdate: true, transparent: true, vertexShader: renderingSettings.shader.vertexShader, fragmentShader: renderingSettings.shader.fragmentShader })] }) }) : null] }), jsx("group", { name: "lines", children: lines.map((object) => jsx(MeasureLine, { currentLine: object, scale: 1 }, stringifyLineData(object))) })] });
 }
-const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-BovcVfOy.js").catch(() => ({ default: GeometryAndMesh })));
-const LazyXRSceneComponents = React__default.lazy(() => import("./XRSceneComponents-CGcz34cr.js").catch(() => ({ default: () => null })));
+const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-BSJ2rBtK.js").catch(() => ({ default: GeometryAndMesh })));
+const LazyXRSceneComponents = React__default.lazy(() => import("./XRSceneComponents-KvBqtraG.js").catch(() => ({ default: () => null })));
 function SpatialThree(props) {
   const materialRef = useRef(null);
   const orbitRef = useRef(null);
@@ -1303,13 +1303,13 @@ function getXRModule() {
 }
 const LazyXRWrapper = React__default.lazy(
   // eslint-disable-next-line implicit-arrow-linebreak, function-paren-newline
-  () => import("./XRWrapper-C1AfBFtW.js").catch(() => ({
+  () => import("./XRWrapper-BNdj_qnt.js").catch(() => ({
     default: ({ children }) => children
   }))
 );
 const LazyXREnterButton = React__default.lazy(
   // eslint-disable-next-line implicit-arrow-linebreak, function-paren-newline
-  () => import("./XREnterButton-Dz4r7Jjx.js").catch(() => ({
+  () => import("./XREnterButton-D-MyjNiM.js").catch(() => ({
     default: () => null
   }))
 );