@vitessce/all 2.0.3 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{deflate.8ace1ac4.mjs → deflate-f57b3163.js} +2 -2
- package/dist/hglib-1422f224.js +138925 -0
- package/dist/{index.7dac8670.mjs → index-3f1c1764.js} +67100 -52955
- package/dist/index.js +12 -0
- package/dist/{jpeg.c8011e3a.mjs → jpeg-e740c9a5.js} +1 -1
- package/dist/{lerc.ccda5eb2.mjs → lerc-01e6c4d8.js} +76 -5
- package/dist/{lzw.39876143.mjs → lzw-865bd058.js} +1 -1
- package/dist/{packbits.9e95d117.mjs → packbits-d4191efd.js} +1 -1
- package/dist/{pako.esm.4b234125.mjs → pako.esm-68f84e2a.js} +97 -15
- package/dist/{raw.0279d74b.mjs → raw-3c693341.js} +1 -1
- package/dist/{webimage.5ac7ce95.mjs → webimage-83da2258.js} +1 -1
- package/dist-tsc/Vitessce.d.ts +2 -0
- package/dist-tsc/Vitessce.d.ts.map +1 -0
- package/dist-tsc/Vitessce.js +41 -0
- package/dist-tsc/base-plugins.d.ts +854 -0
- package/dist-tsc/base-plugins.d.ts.map +1 -0
- package/dist-tsc/base-plugins.js +191 -0
- package/dist-tsc/index.d.ts +4 -0
- package/dist-tsc/index.d.ts.map +1 -0
- package/dist-tsc/index.js +3 -2
- package/dist-tsc/joint-file-types-legacy.d.ts +226 -0
- package/dist-tsc/joint-file-types-legacy.d.ts.map +1 -0
- package/dist-tsc/joint-file-types-legacy.js +266 -0
- package/dist-tsc/joint-file-types-legacy.test.d.ts +2 -0
- package/dist-tsc/joint-file-types-legacy.test.d.ts.map +1 -0
- package/dist-tsc/joint-file-types-legacy.test.js +401 -0
- package/dist-tsc/joint-file-types.d.ts +4 -0
- package/dist-tsc/joint-file-types.d.ts.map +1 -0
- package/dist-tsc/joint-file-types.js +127 -0
- package/dist-tsc/joint-file-types.test.d.ts +2 -0
- package/dist-tsc/joint-file-types.test.d.ts.map +1 -0
- package/dist-tsc/joint-file-types.test.js +128 -0
- package/dist-tsc/latest-config-schema.test.d.ts +2 -0
- package/dist-tsc/latest-config-schema.test.d.ts.map +1 -0
- package/dist-tsc/latest-config-schema.test.js +19 -0
- package/package.json +37 -21
- package/src/Vitessce.tsx +74 -0
- package/src/base-plugins.ts +362 -0
- package/src/index.ts +8 -0
- package/src/joint-file-types-legacy.test.ts +413 -0
- package/src/joint-file-types-legacy.ts +284 -0
- package/src/joint-file-types.test.ts +132 -0
- package/src/joint-file-types.ts +142 -0
- package/src/latest-config-schema.test.ts +26 -0
- package/dist/hglib.1f1ea875.mjs +0 -130303
- package/dist/index.mjs +0 -11
- package/src/index.js +0 -7
- package/src/setup.js +0 -143
package/dist/index.mjs
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import { V } from "./index.7dac8670.mjs";
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import { registerPluginCoordinationType, registerPluginFileType, registerPluginJointFileType, registerPluginViewType } from "@vitessce/vit-s";
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import "react";
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import "react-dom";
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export {
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V as Vitessce,
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registerPluginCoordinationType,
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registerPluginFileType,
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registerPluginJointFileType,
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registerPluginViewType
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};
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package/src/index.js
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package/src/setup.js
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/* eslint-disable max-len */
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import { useState, useLayoutEffect } from 'react';
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import { VitS, registerPluginFileType } from '@vitessce/vit-s';
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// Register view type plugins
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import { register as registerDescription } from '@vitessce/description';
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import { register as registerObsSetsManager } from '@vitessce/obs-sets-manager';
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import { register as registerScatterplotEmbedding } from '@vitessce/scatterplot-embedding';
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import { register as registerScatterplotGating } from '@vitessce/scatterplot-gating';
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import { register as registerSpatial } from '@vitessce/spatial';
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import { register as registerHeatmap } from '@vitessce/heatmap';
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import { register as registerFeatureList } from '@vitessce/feature-list';
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import { register as registerLayerController } from '@vitessce/layer-controller';
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import { register as registerStatus } from '@vitessce/status';
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import { registerCellSetExpression, registerCellSetSizes, registerExpressionHistogram } from '@vitessce/statistical-plots';
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import { registerHiglass, registerGenomicProfiles } from '@vitessce/genomic-profiles';
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// Register file type plugins
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import {
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// CSV
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CsvSource,
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ObsSetsCsvLoader,
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ObsEmbeddingCsvLoader,
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ObsLocationsCsvLoader,
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ObsLabelsCsvLoader,
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ObsFeatureMatrixCsvLoader,
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FeatureLabelsCsvLoader,
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} from '@vitessce/csv';
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import {
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// JSON
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JsonSource,
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JsonLoader,
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ObsSegmentationsJsonLoader,
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ObsSetsJsonLoader,
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// Legacy
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RasterJsonAsImageLoader,
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RasterJsonAsObsSegmentationsLoader,
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ClustersJsonAsObsFeatureMatrixLoader,
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GenesJsonAsObsFeatureMatrixLoader,
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CellsJsonAsObsLabelsLoader,
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CellsJsonAsObsEmbeddingLoader,
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CellsJsonAsObsLocationsLoader,
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CellsJsonAsObsSegmentationsLoader,
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MoleculesJsonAsObsLocationsLoader,
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MoleculesJsonAsObsLabelsLoader,
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} from '@vitessce/json';
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import {
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// AnnData
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AnnDataSource,
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ObsFeatureMatrixAnndataLoader,
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ObsEmbeddingAnndataLoader,
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ObsLocationsAnndataLoader,
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ObsSegmentationsAnndataLoader,
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ObsSetsAnndataLoader,
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ObsLabelsAnndataLoader,
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FeatureLabelsAnndataLoader,
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// MuData
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MuDataSource,
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// OME
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OmeZarrLoader,
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// Legacy
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ZarrDataSource,
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MatrixZarrAsObsFeatureMatrixLoader,
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GenomicProfilesZarrLoader,
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} from '@vitessce/zarr';
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import { FileType, DataType } from '@vitessce/constants-internal';
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function setup() {
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// View types
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registerDescription();
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registerObsSetsManager();
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registerScatterplotEmbedding();
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registerScatterplotGating();
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registerSpatial();
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registerHeatmap();
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registerFeatureList();
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registerLayerController();
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registerStatus();
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// Statistical plots
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registerCellSetExpression();
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registerCellSetSizes();
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registerExpressionHistogram();
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// Higlass
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registerHiglass();
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registerGenomicProfiles();
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// File types
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// All CSV file types
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registerPluginFileType(FileType.OBS_SETS_CSV, DataType.OBS_SETS, ObsSetsCsvLoader, CsvSource);
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registerPluginFileType(FileType.OBS_EMBEDDING_CSV, DataType.OBS_EMBEDDING, ObsEmbeddingCsvLoader, CsvSource);
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registerPluginFileType(FileType.OBS_LOCATIONS_CSV, DataType.OBS_LOCATIONS, ObsLocationsCsvLoader, CsvSource);
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registerPluginFileType(FileType.OBS_LABELS_CSV, DataType.OBS_LABELS, ObsLabelsCsvLoader, CsvSource);
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CSV, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixCsvLoader, CsvSource);
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registerPluginFileType(FileType.FEATURE_LABELS_CSV, DataType.FEATURE_LABELS, FeatureLabelsCsvLoader, CsvSource);
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// All JSON file types
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registerPluginFileType(FileType.OBS_SEGMENTATIONS_JSON, DataType.OBS_SEGMENTATIONS, ObsSegmentationsJsonLoader, JsonSource);
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registerPluginFileType(FileType.OBS_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
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// All AnnData file types
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registerPluginFileType(FileType.OBS_SETS_ANNDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.OBS_EMBEDDING_ANNDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.OBS_LOCATIONS_ANNDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.OBS_LABELS_ANNDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, AnnDataSource);
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registerPluginFileType(FileType.FEATURE_LABELS_ANNDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, AnnDataSource);
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// All MuData file types
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registerPluginFileType(FileType.OBS_SETS_MUDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.OBS_EMBEDDING_MUDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.OBS_LOCATIONS_MUDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.OBS_LABELS_MUDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.OBS_SEGMENTATIONS_MUDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, MuDataSource);
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registerPluginFileType(FileType.FEATURE_LABELS_MUDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, MuDataSource);
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// All OME file types
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registerPluginFileType(FileType.IMAGE_OME_ZARR, DataType.IMAGE, OmeZarrLoader, ZarrDataSource);
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// All legacy file types
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR, DataType.OBS_FEATURE_MATRIX, MatrixZarrAsObsFeatureMatrixLoader, ZarrDataSource);
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registerPluginFileType(FileType.IMAGE_RASTER_JSON, DataType.IMAGE, RasterJsonAsImageLoader, JsonSource);
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registerPluginFileType(FileType.OBS_SEGMENTATIONS_RASTER_JSON, DataType.OBS_SEGMENTATIONS, RasterJsonAsObsSegmentationsLoader, JsonSource);
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registerPluginFileType(FileType.OBS_SETS_CELL_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON, DataType.OBS_FEATURE_MATRIX, ClustersJsonAsObsFeatureMatrixLoader, JsonSource);
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registerPluginFileType(FileType.OBS_FEATURE_MATRIX_GENES_JSON, DataType.OBS_FEATURE_MATRIX, GenesJsonAsObsFeatureMatrixLoader, JsonSource);
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registerPluginFileType(FileType.OBS_LABELS_CELLS_JSON, DataType.OBS_LABELS, CellsJsonAsObsLabelsLoader, JsonSource);
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registerPluginFileType(FileType.OBS_EMBEDDING_CELLS_JSON, DataType.OBS_EMBEDDING, CellsJsonAsObsEmbeddingLoader, JsonSource);
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registerPluginFileType(FileType.OBS_LOCATIONS_CELLS_JSON, DataType.OBS_LOCATIONS, CellsJsonAsObsLocationsLoader, JsonSource);
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registerPluginFileType(FileType.OBS_SEGMENTATIONS_CELLS_JSON, DataType.OBS_SEGMENTATIONS, CellsJsonAsObsSegmentationsLoader, JsonSource);
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registerPluginFileType(FileType.OBS_LOCATIONS_MOLECULES_JSON, DataType.OBS_LOCATIONS, MoleculesJsonAsObsLocationsLoader, JsonSource);
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registerPluginFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource);
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registerPluginFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource);
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registerPluginFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource);
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}
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export function Vitessce(props) {
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const [ready, setReady] = useState(false);
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useLayoutEffect(() => {
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setup();
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setReady(true);
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}, []);
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return (ready ? (
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<VitS {...props} />
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) : null);
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}
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