@unbrained/pm-cli 2026.5.6 → 2026.5.11

package/dist/core/store/item-store.js.map

@@ -1 +1 @@
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fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport {\n  getActiveExtensionRegistrations,\n  runActiveOnReadHooks,\n  runActiveOnWriteHooks,\n  runActiveServiceOverride,\n} from \"../extensions/index.js\";\nimport { EMPTY_CANONICAL_DOCUMENT, EXIT_CODE, TYPE_TO_FOLDER } from \"../shared/constants.js\";\nimport { PmCliError } from \"../shared/errors.js\";\nimport { appendHistoryEntry, createHistoryEntry } from \"../history/history.js\";\nimport { enforceHistoryStreamPolicyForItem } from \"../history/history-stream-policy.js\";\nimport { canonicalDocument, parseItemDocument, serializeItemDocument } from \"../item/item-format.js\";\nimport { resolveItemTypeRegistry } from \"../item/type-registry.js\";\nimport { acquireLock } from \"../lock/lock.js\";\nimport { writeFileAtomic } from \"../fs/fs-utils.js\";\nimport { normalizeItemId, normalizeRawItemId } from \"../item/id.js\";\nimport { listAllDocumentsCached } from \"./front-matter-cache.js\";\nimport { getHistoryPath, getItemFormatFromPath, getItemPath, ITEM_FILE_EXTENSIONS } from \"./paths.js\";\nimport { resolveGovernanceKnobs } from \"./settings.js\";\nimport { nowIso } from \"../shared/time.js\";\nimport type { ItemDocument, ItemFormat, ItemFrontMatter, ItemType, PmSettings, RuntimeSchemaSettings } from \"../../types/index.js\";\n\nexport interface LocatedItem {\n  id: string;\n  type: ItemType;\n  itemPath: string;\n  item_format: ItemFormat;\n}\n\nasync function fileExists(targetPath: string): Promise<boolean> {\n  try {\n    await fs.access(targetPath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nfunction isErrno(error: unknown, code: string): boolean {\n  return typeof error === \"object\" && error !== null && \"code\" in error && (error as { code?: string }).code === code;\n}\n\nfunction appendWarning(warnings: string[] | undefined, warning: string): void {\n  if (!warnings) {\n    return;\n  }\n  if (!warnings.includes(warning)) {\n    warnings.push(warning);\n  }\n}\n\nfunction resolveItemFormatSearchOrder(preferredFormat?: ItemFormat): ItemFormat[] {\n  if (preferredFormat === \"toon\") {\n    return [\"toon\", \"json_markdown\"];\n  }\n  if (preferredFormat === \"json_markdown\") {\n    return [\"json_markdown\", \"toon\"];\n  }\n  return [\"toon\", \"json_markdown\"];\n}\n\nexport async function locateItem(\n  pmRoot: string,\n  rawId: string,\n  idPrefix: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n): Promise<LocatedItem | null> {\n  const normalizedId = normalizeItemId(rawId, idPrefix);\n  const rawNormalizedId = normalizeRawItemId(rawId);\n  const candidateIds = normalizedId === rawNormalizedId ? [normalizedId] : [normalizedId, rawNormalizedId];\n  const entries = Object.entries(typeToFolder) as Array<[ItemType, string]>;\n  const searchOrder = resolveItemFormatSearchOrder(preferredFormat);\n  for (const candidateId of candidateIds) {\n    for (const [type] of entries) {\n      for (const itemFormat of searchOrder) {\n        const itemPath = getItemPath(pmRoot, type, candidateId, itemFormat, typeToFolder);\n        if (await fileExists(itemPath)) {\n          return {\n            id: candidateId,\n            type,\n            itemPath,\n            item_format: itemFormat,\n          };\n        }\n      }\n    }\n  }\n  return null;\n}\n\nexport async function readLocatedItem(\n  item: LocatedItem,\n  options: { schema?: RuntimeSchemaSettings; warnings?: string[] } = {},\n): Promise<{ raw: string; document: ItemDocument }> {\n  const raw = await fs.readFile(item.itemPath, \"utf8\");\n  await runActiveOnReadHooks({\n    path: item.itemPath,\n    scope: \"project\",\n  });\n  const document = parseItemDocument(raw, {\n    format: item.item_format,\n    schema: options.schema,\n    onWarning: (warning) => appendWarning(options.warnings, warning),\n  });\n  return { raw, document };\n}\n\nexport async function listAllFrontMatter(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<ItemFrontMatter[]> {\n  const documents = await listAllDocumentsCached(pmRoot, preferredFormat, typeToFolder, warnings, schema);\n  return documents.map((document) => document.front_matter);\n}\n\nexport async function listAllFrontMatterWithBody(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<Array<ItemFrontMatter & { body: string }>> {\n  const documents = await listAllDocuments(pmRoot, preferredFormat, typeToFolder, warnings, schema);\n  return documents.map((document) => ({\n    ...document.front_matter,\n    body: document.body,\n  }));\n}\n\nasync function listAllDocuments(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<ItemDocument[]> {\n  const entries = Object.entries(typeToFolder) as Array<[ItemType, string]>;\n  const documentsById = new Map<string, { document: ItemDocument; itemFormat: ItemFormat }>();\n\n  const dirResults = await Promise.all(\n    entries.map(async ([, folder]) => {\n      const dirPath = path.join(pmRoot, folder);\n      try {\n        return { folder, files: await fs.readdir(dirPath) };\n      } catch (error: unknown) {\n        if (!isErrno(error, \"ENOENT\")) {\n          appendWarning(warnings, `item_list_directory_read_failed:${folder}`);\n        }\n        return { folder, files: [] as string[] };\n      }\n    }),\n  );\n\n  const readTasks: Array<Promise<{ folder: string; file: string; document: ItemDocument; itemFormat: ItemFormat } | null>> = [];\n  for (const { folder, files } of dirResults) {\n    const dirPath = path.join(pmRoot, folder);\n    for (const file of files.filter((entry) => ITEM_FILE_EXTENSIONS.some((ext) => entry.toLowerCase().endsWith(ext)))) {\n      readTasks.push(\n        (async () => {\n          try {\n            const itemPath = path.join(dirPath, file);\n            const itemFormat = getItemFormatFromPath(itemPath) as ItemFormat;\n            const raw = await fs.readFile(itemPath, \"utf8\");\n            await runActiveOnReadHooks({ path: itemPath, scope: \"project\" });\n            const parsed = parseItemDocument(raw, {\n              format: itemFormat,\n              schema,\n              onWarning: (warning) => appendWarning(warnings, warning),\n            });\n            return { folder, file, document: parsed, itemFormat };\n          } catch {\n            appendWarning(warnings, `item_list_item_read_failed:${folder}/${file}`);\n            return null;\n          }\n        })(),\n      );\n    }\n  }\n\n  const results = await Promise.all(readTasks);\n  for (const result of results) {\n    if (!result) continue;\n    const existing = documentsById.get(result.document.front_matter.id);\n    if (!existing) {\n      documentsById.set(result.document.front_matter.id, {\n        document: result.document,\n        itemFormat: result.itemFormat,\n      });\n      continue;\n    }\n    const shouldReplace = preferredFormat\n      ? result.itemFormat === preferredFormat && existing.itemFormat !== preferredFormat\n      : result.itemFormat === \"toon\" && existing.itemFormat !== \"toon\";\n    if (shouldReplace) {\n      documentsById.set(result.document.front_matter.id, {\n        document: result.document,\n        itemFormat: result.itemFormat,\n      });\n    }\n  }\n  return [...documentsById.values()]\n    .sort((left, right) => left.document.front_matter.id.localeCompare(right.document.front_matter.id))\n    .map((entry) => entry.document);\n}\n\nexport async function mutateItem(params: {\n  pmRoot: string;\n  settings: PmSettings;\n  id: string;\n  op: string;\n  author: string;\n  message?: string;\n  force?: boolean;\n  bypassAssigneeConflict?: boolean;\n  typeToFolder?: Record<string, string>;\n  mutate: (document: ItemDocument) => { changedFields: string[]; warnings?: string[] };\n}): Promise<{ item: ItemFrontMatter; body: string; changedFields: string[]; warnings: string[] }> {\n  const typeToFolder =\n    params.typeToFolder ?? resolveItemTypeRegistry(params.settings, getActiveExtensionRegistrations()).type_to_folder;\n  const located = await locateItem(params.pmRoot, params.id, params.settings.id_prefix, params.settings.item_format, typeToFolder);\n  if (!located) {\n    throw new PmCliError(`Item ${params.id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const releaseLock = await acquireLock(\n    params.pmRoot,\n    located.id,\n    params.settings.locks.ttl_seconds,\n    params.author,\n    Boolean(params.force),\n    params.settings.governance.force_required_for_stale_lock,\n  );\n\n  try {\n    const parseWarnings: string[] = [];\n    const { raw: originalRaw, document } = await readLocatedItem(located, {\n      schema: params.settings.schema,\n      warnings: parseWarnings,\n    });\n\n    const assigned = document.front_matter.assignee?.trim();\n    const governance = resolveGovernanceKnobs(params.settings);\n    const bypassAssigneeConflict =\n      params.op === \"claim\" ||\n      ((\n        params.op === \"comment_add\" ||\n        params.op === \"note_add\" ||\n        params.op === \"learning_add\" ||\n        params.op === \"release\" ||\n        params.op === \"update\" ||\n        params.op === \"update_audit\"\n      ) &&\n        params.bypassAssigneeConflict === true);\n    const hasOwnershipConflict = assigned && assigned !== params.author && !params.force && !bypassAssigneeConflict;\n    if (hasOwnershipConflict) {\n      if (governance.ownership_enforcement === \"strict\") {\n        throw new PmCliError(\n          `Item ${located.id} is assigned to ${assigned}. Use --force to override.`,\n          EXIT_CODE.CONFLICT,\n        );\n      }\n      if (governance.ownership_enforcement === \"warn\") {\n        parseWarnings.push(`ownership_warning:assignee_conflict:${located.id}:${assigned}`);\n      }\n    }\n    const historyPolicy = await enforceHistoryStreamPolicyForItem({\n      pmRoot: params.pmRoot,\n      settings: params.settings,\n      itemId: located.id,\n      commandLabel: params.op,\n    });\n\n    const beforeDocument = canonicalDocument(document, { schema: params.settings.schema });\n    const mutableDocument = canonicalDocument(structuredClone(document), { schema: params.settings.schema });\n    const mutation = params.mutate(mutableDocument);\n    mutableDocument.front_matter.updated_at = nowIso();\n    const afterDocument = canonicalDocument(mutableDocument, { schema: params.settings.schema });\n    const serializedAfter = serializeItemDocument(afterDocument, {\n      format: located.item_format,\n      schema: params.settings.schema,\n    });\n    const targetItemPath = getItemPath(\n      params.pmRoot,\n      afterDocument.front_matter.type,\n      located.id,\n      located.item_format,\n      typeToFolder,\n    );\n    const historyPath = getHistoryPath(params.pmRoot, located.id);\n    const serviceWriteOverride = await runActiveServiceOverride(\"item_store_write\", {\n      op: params.op,\n      pm_root: params.pmRoot,\n      item_id: located.id,\n      source_item_path: located.itemPath,\n      target_item_path: targetItemPath,\n      history_path: historyPath,\n      item_format: located.item_format,\n      before: beforeDocument,\n      after: afterDocument,\n      contents: serializedAfter,\n    });\n    let effectiveTargetItemPath = targetItemPath;\n    let effectiveSerializedAfter = serializedAfter;\n    let skipItemWrite = false;\n    if (serviceWriteOverride.handled && typeof serviceWriteOverride.result === \"object\" && serviceWriteOverride.result !== null) {\n      const overrideRecord = serviceWriteOverride.result as {\n        target_item_path?: unknown;\n        contents?: unknown;\n        skip_write?: unknown;\n      };\n      if (typeof overrideRecord.target_item_path === \"string\" && overrideRecord.target_item_path.trim().length > 0) {\n        effectiveTargetItemPath = overrideRecord.target_item_path;\n      }\n      if (typeof overrideRecord.contents === \"string\") {\n        effectiveSerializedAfter = overrideRecord.contents;\n      }\n      if (overrideRecord.skip_write === true) {\n        skipItemWrite = true;\n      }\n    }\n\n    if (!skipItemWrite) {\n      await writeFileAtomic(effectiveTargetItemPath, effectiveSerializedAfter);\n    }\n    if (!skipItemWrite && effectiveTargetItemPath !== located.itemPath) {\n      await fs.rm(located.itemPath);\n    }\n    const entry = createHistoryEntry({\n      nowIso: afterDocument.front_matter.updated_at,\n      author: params.author,\n      op: params.op,\n      before: beforeDocument,\n      after: afterDocument,\n      message: params.message,\n    });\n\n    try {\n      await appendHistoryEntry(historyPath, entry);\n    } catch (error: unknown) {\n      if (!skipItemWrite && effectiveTargetItemPath !== located.itemPath) {\n        await writeFileAtomic(located.itemPath, originalRaw);\n        await fs.rm(effectiveTargetItemPath, { force: true });\n      } else if (!skipItemWrite) {\n        await writeFileAtomic(located.itemPath, originalRaw);\n      }\n      throw error;\n    }\n    const hookWarnings = [\n      ...(await runActiveOnWriteHooks({\n        path: effectiveTargetItemPath,\n        scope: \"project\",\n        op: params.op,\n      })),\n      ...(await runActiveOnWriteHooks({\n        path: historyPath,\n        scope: \"project\",\n        op: `${params.op}:history`,\n      })),\n    ];\n\n    return {\n      item: afterDocument.front_matter,\n      body: afterDocument.body,\n      changedFields: mutation.changedFields,\n      warnings: [\n        ...parseWarnings,\n        ...(mutation.warnings ?? []),\n        ...historyPolicy.warnings,\n        ...serviceWriteOverride.warnings,\n        ...hookWarnings,\n      ],\n    };\n  } finally {\n    await releaseLock();\n  }\n}\n\nexport async function deleteItem(params: {\n  pmRoot: string;\n  settings: PmSettings;\n  id: string;\n  author: string;\n  message?: string;\n  force?: boolean;\n}): Promise<{ item: ItemFrontMatter; changedFields: string[]; warnings: string[] }> {\n  const typeToFolder = resolveItemTypeRegistry(params.settings, getActiveExtensionRegistrations()).type_to_folder;\n  const located = await locateItem(params.pmRoot, params.id, params.settings.id_prefix, params.settings.item_format, typeToFolder);\n  if (!located) {\n    throw new PmCliError(`Item ${params.id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const releaseLock = await acquireLock(\n    params.pmRoot,\n    located.id,\n    params.settings.locks.ttl_seconds,\n    params.author,\n    Boolean(params.force),\n    params.settings.governance.force_required_for_stale_lock,\n  );\n\n  try {\n    const parseWarnings: string[] = [];\n    const { raw: originalRaw, document } = await readLocatedItem(located, {\n      schema: params.settings.schema,\n      warnings: parseWarnings,\n    });\n\n    const assigned = document.front_matter.assignee?.trim();\n    const governance = resolveGovernanceKnobs(params.settings);\n    const hasOwnershipConflict = assigned && assigned !== params.author && !params.force;\n    if (hasOwnershipConflict) {\n      if (governance.ownership_enforcement === \"strict\") {\n        throw new PmCliError(\n          `Item ${located.id} is assigned to ${assigned}. Use --force to override.`,\n          EXIT_CODE.CONFLICT,\n        );\n      }\n      if (governance.ownership_enforcement === \"warn\") {\n        parseWarnings.push(`ownership_warning:assignee_conflict:${located.id}:${assigned}`);\n      }\n    }\n    const historyPolicy = await enforceHistoryStreamPolicyForItem({\n      pmRoot: params.pmRoot,\n      settings: params.settings,\n      itemId: located.id,\n      commandLabel: \"delete\",\n    });\n\n    const beforeDocument = canonicalDocument(document, { schema: params.settings.schema });\n    const deletionTimestamp = nowIso();\n    const tombstoneDocument = EMPTY_CANONICAL_DOCUMENT as unknown as ItemDocument;\n    const historyEntry = createHistoryEntry({\n      nowIso: deletionTimestamp,\n      author: params.author,\n      op: \"delete\",\n      before: beforeDocument,\n      after: tombstoneDocument,\n      message: params.message,\n    });\n    const historyPath = getHistoryPath(params.pmRoot, located.id);\n    const serviceDeleteOverride = await runActiveServiceOverride(\"item_store_delete\", {\n      op: \"delete\",\n      pm_root: params.pmRoot,\n      item_id: located.id,\n      item_path: located.itemPath,\n      history_path: historyPath,\n      before: beforeDocument,\n    });\n    let effectiveItemPath = located.itemPath;\n    let skipDelete = false;\n    if (\n      serviceDeleteOverride.handled &&\n      typeof serviceDeleteOverride.result === \"object\" &&\n      serviceDeleteOverride.result !== null\n    ) {\n      const overrideRecord = serviceDeleteOverride.result as {\n        item_path?: unknown;\n        skip_delete?: unknown;\n      };\n      if (typeof overrideRecord.item_path === \"string\" && overrideRecord.item_path.trim().length > 0) {\n        effectiveItemPath = overrideRecord.item_path;\n      }\n      if (overrideRecord.skip_delete === true) {\n        skipDelete = true;\n      }\n    }\n\n    if (!skipDelete) {\n      await fs.rm(effectiveItemPath);\n    }\n    try {\n      await appendHistoryEntry(historyPath, historyEntry);\n    } catch (error: unknown) {\n      if (!skipDelete) {\n        await writeFileAtomic(effectiveItemPath, originalRaw);\n      }\n      throw error;\n    }\n\n    const hookWarnings = [\n      ...(await runActiveOnWriteHooks({\n        path: effectiveItemPath,\n        scope: \"project\",\n        op: \"delete\",\n      })),\n      ...(await runActiveOnWriteHooks({\n        path: historyPath,\n        scope: \"project\",\n        op: \"delete:history\",\n      })),\n    ];\n\n    return {\n      item: beforeDocument.front_matter,\n      changedFields: [\"deleted\"],\n      warnings: [...parseWarnings, ...historyPolicy.warnings, ...serviceDeleteOverride.warnings, ...hookWarnings],\n    };\n  } finally {\n    await releaseLock();\n  }\n}\n"]}
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fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport {\n  getActiveExtensionRegistrations,\n  runActiveOnReadHooks,\n  runActiveOnWriteHooks,\n  runActiveServiceOverride,\n} from \"../extensions/index.js\";\nimport { EMPTY_CANONICAL_DOCUMENT, EXIT_CODE, TYPE_TO_FOLDER } from \"../shared/constants.js\";\nimport { PmCliError } from \"../shared/errors.js\";\nimport { appendHistoryEntry, createHistoryEntry } from \"../history/history.js\";\nimport { enforceHistoryStreamPolicyForItem } from \"../history/history-stream-policy.js\";\nimport { canonicalDocument, parseItemDocument, serializeItemDocument } from \"../item/item-format.js\";\nimport { resolveItemTypeRegistry } from \"../item/type-registry.js\";\nimport { acquireLock } from \"../lock/lock.js\";\nimport { writeFileAtomic } from \"../fs/fs-utils.js\";\nimport { normalizeItemId, normalizeRawItemId } from \"../item/id.js\";\nimport { listAllDocumentsCached } from \"./front-matter-cache.js\";\nimport { getHistoryPath, getItemFormatFromPath, getItemPath, ITEM_FILE_EXTENSIONS } from \"./paths.js\";\nimport { resolveGovernanceKnobs } from \"./settings.js\";\nimport { nowIso } from \"../shared/time.js\";\nimport type { ItemDocument, ItemFormat, ItemFrontMatter, ItemType, PmSettings, RuntimeSchemaSettings } from \"../../types/index.js\";\n\nexport interface LocatedItem {\n  id: string;\n  type: ItemType;\n  itemPath: string;\n  item_format: ItemFormat;\n}\n\nasync function fileExists(targetPath: string): Promise<boolean> {\n  try {\n    await fs.access(targetPath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nfunction isErrno(error: unknown, code: string): boolean {\n  return typeof error === \"object\" && error !== null && \"code\" in error && (error as { code?: string }).code === code;\n}\n\nfunction appendWarning(warnings: string[] | undefined, warning: string): void {\n  if (!warnings) {\n    return;\n  }\n  if (!warnings.includes(warning)) {\n    warnings.push(warning);\n  }\n}\n\nfunction resolveItemFormatSearchOrder(preferredFormat?: ItemFormat): ItemFormat[] {\n  if (preferredFormat === \"toon\") {\n    return [\"toon\", \"json_markdown\"];\n  }\n  if (preferredFormat === \"json_markdown\") {\n    return [\"json_markdown\", \"toon\"];\n  }\n  return [\"toon\", \"json_markdown\"];\n}\n\nexport async function locateItem(\n  pmRoot: string,\n  rawId: string,\n  idPrefix: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n): Promise<LocatedItem | null> {\n  const normalizedId = normalizeItemId(rawId, idPrefix);\n  const rawNormalizedId = normalizeRawItemId(rawId);\n  const candidateIds = normalizedId === rawNormalizedId ? [normalizedId] : [normalizedId, rawNormalizedId];\n  const entries = Object.entries(typeToFolder) as Array<[ItemType, string]>;\n  const searchOrder = resolveItemFormatSearchOrder(preferredFormat);\n  for (const candidateId of candidateIds) {\n    for (const [type] of entries) {\n      for (const itemFormat of searchOrder) {\n        const itemPath = getItemPath(pmRoot, type, candidateId, itemFormat, typeToFolder);\n        if (await fileExists(itemPath)) {\n          return {\n            id: candidateId,\n            type,\n            itemPath,\n            item_format: itemFormat,\n          };\n        }\n      }\n    }\n  }\n  return null;\n}\n\nexport async function readLocatedItem(\n  item: LocatedItem,\n  options: { schema?: RuntimeSchemaSettings; warnings?: string[] } = {},\n): Promise<{ raw: string; document: ItemDocument }> {\n  const raw = await fs.readFile(item.itemPath, \"utf8\");\n  await runActiveOnReadHooks({\n    path: item.itemPath,\n    scope: \"project\",\n  });\n  const document = parseItemDocument(raw, {\n    format: item.item_format,\n    schema: options.schema,\n    onWarning: (warning) => appendWarning(options.warnings, warning),\n  });\n  return { raw, document };\n}\n\nexport async function listAllFrontMatter(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<ItemFrontMatter[]> {\n  const documents = await listAllDocumentsCached(pmRoot, preferredFormat, typeToFolder, warnings, schema);\n  return documents.map((document) => document.metadata);\n}\n\nexport async function listAllFrontMatterWithBody(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<Array<ItemFrontMatter & { body: string }>> {\n  const documents = await listAllDocuments(pmRoot, preferredFormat, typeToFolder, warnings, schema);\n  return documents.map((document) => ({\n    ...document.metadata,\n    body: document.body,\n  }));\n}\n\nasync function listAllDocuments(\n  pmRoot: string,\n  preferredFormat?: ItemFormat,\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n  warnings?: string[],\n  schema?: RuntimeSchemaSettings,\n): Promise<ItemDocument[]> {\n  const entries = Object.entries(typeToFolder) as Array<[ItemType, string]>;\n  const documentsById = new Map<string, { document: ItemDocument; itemFormat: ItemFormat }>();\n\n  const dirResults = await Promise.all(\n    entries.map(async ([, folder]) => {\n      const dirPath = path.join(pmRoot, folder);\n      try {\n        return { folder, files: await fs.readdir(dirPath) };\n      } catch (error: unknown) {\n        if (!isErrno(error, \"ENOENT\")) {\n          appendWarning(warnings, `item_list_directory_read_failed:${folder}`);\n        }\n        return { folder, files: [] as string[] };\n      }\n    }),\n  );\n\n  const readTasks: Array<Promise<{ folder: string; file: string; document: ItemDocument; itemFormat: ItemFormat } | null>> = [];\n  for (const { folder, files } of dirResults) {\n    const dirPath = path.join(pmRoot, folder);\n    for (const file of files.filter((entry) => ITEM_FILE_EXTENSIONS.some((ext) => entry.toLowerCase().endsWith(ext)))) {\n      readTasks.push(\n        (async () => {\n          try {\n            const itemPath = path.join(dirPath, file);\n            const itemFormat = getItemFormatFromPath(itemPath) as ItemFormat;\n            const raw = await fs.readFile(itemPath, \"utf8\");\n            await runActiveOnReadHooks({ path: itemPath, scope: \"project\" });\n            const parsed = parseItemDocument(raw, {\n              format: itemFormat,\n              schema,\n              onWarning: (warning) => appendWarning(warnings, warning),\n            });\n            return { folder, file, document: parsed, itemFormat };\n          } catch {\n            appendWarning(warnings, `item_list_item_read_failed:${folder}/${file}`);\n            return null;\n          }\n        })(),\n      );\n    }\n  }\n\n  const results = await Promise.all(readTasks);\n  for (const result of results) {\n    if (!result) continue;\n    const existing = documentsById.get(result.document.metadata.id);\n    if (!existing) {\n      documentsById.set(result.document.metadata.id, {\n        document: result.document,\n        itemFormat: result.itemFormat,\n      });\n      continue;\n    }\n    const shouldReplace = preferredFormat\n      ? result.itemFormat === preferredFormat && existing.itemFormat !== preferredFormat\n      : result.itemFormat === \"toon\" && existing.itemFormat !== \"toon\";\n    if (shouldReplace) {\n      documentsById.set(result.document.metadata.id, {\n        document: result.document,\n        itemFormat: result.itemFormat,\n      });\n    }\n  }\n  return [...documentsById.values()]\n    .sort((left, right) => left.document.metadata.id.localeCompare(right.document.metadata.id))\n    .map((entry) => entry.document);\n}\n\nexport async function mutateItem(params: {\n  pmRoot: string;\n  settings: PmSettings;\n  id: string;\n  op: string;\n  author: string;\n  message?: string;\n  force?: boolean;\n  bypassAssigneeConflict?: boolean;\n  typeToFolder?: Record<string, string>;\n  mutate: (document: ItemDocument) => { changedFields: string[]; warnings?: string[] };\n}): Promise<{ item: ItemFrontMatter; body: string; changedFields: string[]; warnings: string[] }> {\n  const typeToFolder =\n    params.typeToFolder ?? resolveItemTypeRegistry(params.settings, getActiveExtensionRegistrations()).type_to_folder;\n  const located = await locateItem(params.pmRoot, params.id, params.settings.id_prefix, params.settings.item_format, typeToFolder);\n  if (!located) {\n    throw new PmCliError(`Item ${params.id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const releaseLock = await acquireLock(\n    params.pmRoot,\n    located.id,\n    params.settings.locks.ttl_seconds,\n    params.author,\n    Boolean(params.force),\n    params.settings.governance.force_required_for_stale_lock,\n  );\n\n  try {\n    const parseWarnings: string[] = [];\n    const { raw: originalRaw, document } = await readLocatedItem(located, {\n      schema: params.settings.schema,\n      warnings: parseWarnings,\n    });\n\n    const assigned = document.metadata.assignee?.trim();\n    const governance = resolveGovernanceKnobs(params.settings);\n    const bypassAssigneeConflict =\n      params.op === \"claim\" ||\n      ((\n        params.op === \"comment_add\" ||\n        params.op === \"note_add\" ||\n        params.op === \"learning_add\" ||\n        params.op === \"release\" ||\n        params.op === \"update\" ||\n        params.op === \"update_audit\"\n      ) &&\n        params.bypassAssigneeConflict === true);\n    const hasOwnershipConflict = assigned && assigned !== params.author && !params.force && !bypassAssigneeConflict;\n    if (hasOwnershipConflict) {\n      if (governance.ownership_enforcement === \"strict\") {\n        throw new PmCliError(\n          `Item ${located.id} is assigned to ${assigned}. Use --force to override.`,\n          EXIT_CODE.CONFLICT,\n        );\n      }\n      if (governance.ownership_enforcement === \"warn\") {\n        parseWarnings.push(`ownership_warning:assignee_conflict:${located.id}:${assigned}`);\n      }\n    }\n    const historyPolicy = await enforceHistoryStreamPolicyForItem({\n      pmRoot: params.pmRoot,\n      settings: params.settings,\n      itemId: located.id,\n      commandLabel: params.op,\n    });\n\n    const beforeDocument = canonicalDocument(document, { schema: params.settings.schema });\n    const mutableDocument = canonicalDocument(structuredClone(document), { schema: params.settings.schema });\n    const mutation = params.mutate(mutableDocument);\n    mutableDocument.metadata.updated_at = nowIso();\n    const afterDocument = canonicalDocument(mutableDocument, { schema: params.settings.schema });\n    const targetItemFormat: ItemFormat = \"toon\";\n    const serializedAfter = serializeItemDocument(afterDocument, {\n      format: targetItemFormat,\n      schema: params.settings.schema,\n    });\n    const targetItemPath = getItemPath(\n      params.pmRoot,\n      afterDocument.metadata.type,\n      located.id,\n      targetItemFormat,\n      typeToFolder,\n    );\n    const historyPath = getHistoryPath(params.pmRoot, located.id);\n    const serviceWriteOverride = await runActiveServiceOverride(\"item_store_write\", {\n      op: params.op,\n      pm_root: params.pmRoot,\n      item_id: located.id,\n      source_item_path: located.itemPath,\n      target_item_path: targetItemPath,\n      history_path: historyPath,\n      item_format: targetItemFormat,\n      before: beforeDocument,\n      after: afterDocument,\n      contents: serializedAfter,\n    });\n    let effectiveTargetItemPath = targetItemPath;\n    let effectiveSerializedAfter = serializedAfter;\n    let skipItemWrite = false;\n    if (serviceWriteOverride.handled && typeof serviceWriteOverride.result === \"object\" && serviceWriteOverride.result !== null) {\n      const overrideRecord = serviceWriteOverride.result as {\n        target_item_path?: unknown;\n        contents?: unknown;\n        skip_write?: unknown;\n      };\n      if (typeof overrideRecord.target_item_path === \"string\" && overrideRecord.target_item_path.trim().length > 0) {\n        effectiveTargetItemPath = overrideRecord.target_item_path;\n      }\n      if (typeof overrideRecord.contents === \"string\") {\n        effectiveSerializedAfter = overrideRecord.contents;\n      }\n      if (overrideRecord.skip_write === true) {\n        skipItemWrite = true;\n      }\n    }\n\n    if (!skipItemWrite) {\n      await writeFileAtomic(effectiveTargetItemPath, effectiveSerializedAfter);\n    }\n    if (!skipItemWrite && effectiveTargetItemPath !== located.itemPath) {\n      await fs.rm(located.itemPath);\n    }\n    const entry = createHistoryEntry({\n      nowIso: afterDocument.metadata.updated_at,\n      author: params.author,\n      op: params.op,\n      before: beforeDocument,\n      after: afterDocument,\n      message: params.message,\n    });\n\n    try {\n      await appendHistoryEntry(historyPath, entry);\n    } catch (error: unknown) {\n      if (!skipItemWrite && effectiveTargetItemPath !== located.itemPath) {\n        await writeFileAtomic(located.itemPath, originalRaw);\n        await fs.rm(effectiveTargetItemPath, { force: true });\n      } else if (!skipItemWrite) {\n        await writeFileAtomic(located.itemPath, originalRaw);\n      }\n      throw error;\n    }\n    const hookWarnings = [\n      ...(await runActiveOnWriteHooks({\n        path: effectiveTargetItemPath,\n        scope: \"project\",\n        op: params.op,\n      })),\n      ...(await runActiveOnWriteHooks({\n        path: historyPath,\n        scope: \"project\",\n        op: `${params.op}:history`,\n      })),\n    ];\n\n    return {\n      item: afterDocument.metadata,\n      body: afterDocument.body,\n      changedFields: mutation.changedFields,\n      warnings: [\n        ...parseWarnings,\n        ...(mutation.warnings ?? []),\n        ...historyPolicy.warnings,\n        ...serviceWriteOverride.warnings,\n        ...hookWarnings,\n      ],\n    };\n  } finally {\n    await releaseLock();\n  }\n}\n\nexport async function deleteItem(params: {\n  pmRoot: string;\n  settings: PmSettings;\n  id: string;\n  author: string;\n  message?: string;\n  force?: boolean;\n}): Promise<{ item: ItemFrontMatter; changedFields: string[]; warnings: string[] }> {\n  const typeToFolder = resolveItemTypeRegistry(params.settings, getActiveExtensionRegistrations()).type_to_folder;\n  const located = await locateItem(params.pmRoot, params.id, params.settings.id_prefix, params.settings.item_format, typeToFolder);\n  if (!located) {\n    throw new PmCliError(`Item ${params.id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const releaseLock = await acquireLock(\n    params.pmRoot,\n    located.id,\n    params.settings.locks.ttl_seconds,\n    params.author,\n    Boolean(params.force),\n    params.settings.governance.force_required_for_stale_lock,\n  );\n\n  try {\n    const parseWarnings: string[] = [];\n    const { raw: originalRaw, document } = await readLocatedItem(located, {\n      schema: params.settings.schema,\n      warnings: parseWarnings,\n    });\n\n    const assigned = document.metadata.assignee?.trim();\n    const governance = resolveGovernanceKnobs(params.settings);\n    const hasOwnershipConflict = assigned && assigned !== params.author && !params.force;\n    if (hasOwnershipConflict) {\n      if (governance.ownership_enforcement === \"strict\") {\n        throw new PmCliError(\n          `Item ${located.id} is assigned to ${assigned}. Use --force to override.`,\n          EXIT_CODE.CONFLICT,\n        );\n      }\n      if (governance.ownership_enforcement === \"warn\") {\n        parseWarnings.push(`ownership_warning:assignee_conflict:${located.id}:${assigned}`);\n      }\n    }\n    const historyPolicy = await enforceHistoryStreamPolicyForItem({\n      pmRoot: params.pmRoot,\n      settings: params.settings,\n      itemId: located.id,\n      commandLabel: \"delete\",\n    });\n\n    const beforeDocument = canonicalDocument(document, { schema: params.settings.schema });\n    const deletionTimestamp = nowIso();\n    const tombstoneDocument = EMPTY_CANONICAL_DOCUMENT as unknown as ItemDocument;\n    const historyEntry = createHistoryEntry({\n      nowIso: deletionTimestamp,\n      author: params.author,\n      op: \"delete\",\n      before: beforeDocument,\n      after: tombstoneDocument,\n      message: params.message,\n    });\n    const historyPath = getHistoryPath(params.pmRoot, located.id);\n    const serviceDeleteOverride = await runActiveServiceOverride(\"item_store_delete\", {\n      op: \"delete\",\n      pm_root: params.pmRoot,\n      item_id: located.id,\n      item_path: located.itemPath,\n      history_path: historyPath,\n      before: beforeDocument,\n    });\n    let effectiveItemPath = located.itemPath;\n    let skipDelete = false;\n    if (\n      serviceDeleteOverride.handled &&\n      typeof serviceDeleteOverride.result === \"object\" &&\n      serviceDeleteOverride.result !== null\n    ) {\n      const overrideRecord = serviceDeleteOverride.result as {\n        item_path?: unknown;\n        skip_delete?: unknown;\n      };\n      if (typeof overrideRecord.item_path === \"string\" && overrideRecord.item_path.trim().length > 0) {\n        effectiveItemPath = overrideRecord.item_path;\n      }\n      if (overrideRecord.skip_delete === true) {\n        skipDelete = true;\n      }\n    }\n\n    if (!skipDelete) {\n      await fs.rm(effectiveItemPath);\n    }\n    try {\n      await appendHistoryEntry(historyPath, historyEntry);\n    } catch (error: unknown) {\n      if (!skipDelete) {\n        await writeFileAtomic(effectiveItemPath, originalRaw);\n      }\n      throw error;\n    }\n\n    const hookWarnings = [\n      ...(await runActiveOnWriteHooks({\n        path: effectiveItemPath,\n        scope: \"project\",\n        op: \"delete\",\n      })),\n      ...(await runActiveOnWriteHooks({\n        path: historyPath,\n        scope: \"project\",\n        op: \"delete:history\",\n      })),\n    ];\n\n    return {\n      item: beforeDocument.metadata,\n      changedFields: [\"deleted\"],\n      warnings: [...parseWarnings, ...historyPolicy.warnings, ...serviceDeleteOverride.warnings, ...hookWarnings],\n    };\n  } finally {\n    await releaseLock();\n  }\n}\n"]}

package/dist/core/store/paths.js

@@ -1,3 +1,4 @@
+import { statSync } from "node:fs";
 import os from "node:os";
 import path from "node:path";
 import { PM_DIRNAME, SETTINGS_FILENAME, TYPE_TO_FOLDER } from "../shared/constants.js";
@@ -10,9 +11,41 @@ const ITEM_FORMAT_BY_EXTENSION = {
     ".toon": "toon",
 };
 export const ITEM_FILE_EXTENSIONS = [".md", ".toon"];
+function pathExists(pathValue) {
+    try {
+        statSync(pathValue);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function discoverPmRootFromAncestors(cwd) {
+    let current = path.resolve(cwd);
+    while (true) {
+        const candidateRoot = path.join(current, PM_DIRNAME);
+        const candidateSettingsPath = path.join(candidateRoot, SETTINGS_FILENAME);
+        if (pathExists(candidateSettingsPath)) {
+            return candidateRoot;
+        }
+        const parent = path.dirname(current);
+        if (parent === current) {
+            return undefined;
+        }
+        current = parent;
+    }
+}
 export function resolvePmRoot(cwd, cliPath) {
     const envPath = process.env.PM_PATH;
-    const selected = cliPath?.trim() || envPath?.trim() || PM_DIRNAME;
+    const explicitPath = cliPath?.trim() || envPath?.trim();
+    if (explicitPath) {
+        return path.resolve(cwd, explicitPath);
+    }
+    const discoveredRoot = discoverPmRootFromAncestors(cwd);
+    if (discoveredRoot) {
+        return discoveredRoot;
+    }
+    const selected = PM_DIRNAME;
     return path.resolve(cwd, selected);
 }
 export function resolveGlobalPmRoot(cwd) {
@@ -38,7 +71,7 @@ export function getTypeDirPath(pmRoot, type, typeToFolder = TYPE_TO_FOLDER) {
     const folder = typeToFolder[type] ?? deriveDefaultTypeFolder(type);
     return path.join(pmRoot, folder);
 }
-export function getItemPath(pmRoot, type, id, itemFormat = "json_markdown", typeToFolder = TYPE_TO_FOLDER) {
+export function getItemPath(pmRoot, type, id, itemFormat = "toon", typeToFolder = TYPE_TO_FOLDER) {
     return path.join(getTypeDirPath(pmRoot, type, typeToFolder), `${id}${ITEM_FILE_EXTENSION_BY_FORMAT[itemFormat]}`);
 }
 export function getItemFormatFromPath(itemPath) {

package/dist/core/store/paths.js.map

@@ -1 +1 @@
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candidateSettingsPath = path.join(candidateRoot, SETTINGS_FILENAME);\n    if (pathExists(candidateSettingsPath)) {\n      return candidateRoot;\n    }\n    const parent = path.dirname(current);\n    if (parent === current) {\n      return undefined;\n    }\n    current = parent;\n  }\n}\n\nexport function resolvePmRoot(cwd: string, cliPath?: string): string {\n  const envPath = process.env.PM_PATH;\n  const explicitPath = cliPath?.trim() || envPath?.trim();\n  if (explicitPath) {\n    return path.resolve(cwd, explicitPath);\n  }\n  const discoveredRoot = discoverPmRootFromAncestors(cwd);\n  if (discoveredRoot) {\n    return discoveredRoot;\n  }\n  const selected = PM_DIRNAME;\n  return path.resolve(cwd, selected);\n}\n\nexport function resolveGlobalPmRoot(cwd: string): string {\n  const envPath = process.env.PM_GLOBAL_PATH?.trim();\n  const selected = envPath && envPath.length > 0 ? envPath : path.join(os.homedir(), \".pm-cli\");\n  return path.resolve(cwd, selected);\n}\n\nexport function getSettingsPath(pmRoot: string): string {\n  return path.join(pmRoot, SETTINGS_FILENAME);\n}\n\nfunction deriveDefaultTypeFolder(type: string): string {\n  const normalized = type\n    .trim()\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, \"-\")\n    .replace(/^-+|-+$/g, \"\");\n  if (normalized.length === 0) {\n    return \"items\";\n  }\n  return normalized.endsWith(\"s\") ? normalized : `${normalized}s`;\n}\n\nexport function getTypeDirPath(pmRoot: string, type: ItemType, typeToFolder: Record<string, string> = TYPE_TO_FOLDER): string {\n  const folder = typeToFolder[type] ?? deriveDefaultTypeFolder(type);\n  return path.join(pmRoot, folder);\n}\n\nexport function getItemPath(\n  pmRoot: string,\n  type: ItemType,\n  id: string,\n  itemFormat: ItemFormat = \"toon\",\n  typeToFolder: Record<string, string> = TYPE_TO_FOLDER,\n): string {\n  return path.join(getTypeDirPath(pmRoot, type, typeToFolder), `${id}${ITEM_FILE_EXTENSION_BY_FORMAT[itemFormat]}`);\n}\n\nexport function getItemFormatFromPath(itemPath: string): ItemFormat | null {\n  const extension = path.extname(itemPath).toLowerCase() as keyof typeof ITEM_FORMAT_BY_EXTENSION;\n  return ITEM_FORMAT_BY_EXTENSION[extension] ?? null;\n}\n\nexport function getHistoryPath(pmRoot: string, id: string): string {\n  return path.join(pmRoot, \"history\", `${id}.jsonl`);\n}\n\nexport function getLockPath(pmRoot: string, id: string): string {\n  return path.join(pmRoot, \"locks\", `${id}.lock`);\n}\n\nexport function getRuntimePath(pmRoot: string): string {\n  return path.join(pmRoot, \"runtime\");\n}\n\nexport function getTestRunsPath(pmRoot: string): string {\n  return path.join(getRuntimePath(pmRoot), \"test-runs\");\n}\n\nexport function getTestRunsRecordsPath(pmRoot: string): string {\n  return path.join(getTestRunsPath(pmRoot), \"runs\");\n}\n\nexport function getTestRunRecordPath(pmRoot: string, runId: string): string {\n  return path.join(getTestRunsRecordsPath(pmRoot), `${runId}.json`);\n}\n\nexport function getTestRunsStdoutPath(pmRoot: string): string {\n  return path.join(getTestRunsPath(pmRoot), \"stdout\");\n}\n\nexport function getTestRunsStderrPath(pmRoot: string): string {\n  return path.join(getTestRunsPath(pmRoot), \"stderr\");\n}\n\nexport function getTestRunStdoutPath(pmRoot: string, runId: string): string {\n  return path.join(getTestRunsStdoutPath(pmRoot), `${runId}.log`);\n}\n\nexport function getTestRunStderrPath(pmRoot: string, runId: string): string {\n  return path.join(getTestRunsStderrPath(pmRoot), `${runId}.log`);\n}\n\nexport function getTestRunsResultsPath(pmRoot: string): string {\n  return path.join(getTestRunsPath(pmRoot), \"results\");\n}\n\nexport function getTestRunResultPath(pmRoot: string, runId: string): string {\n  return path.join(getTestRunsResultsPath(pmRoot), `${runId}.json`);\n}\n"]}

package/dist/core/store/settings.js

@@ -49,6 +49,7 @@ const runtimeStatusDefinitionSchema = z.object({
 });
 const runtimeFieldDefinitionSchema = z.object({
     key: z.string(),
+    metadata_key: z.string().optional(),
     front_matter_key: z.string().optional(),
     cli_flag: z.string().optional(),
     cli_aliases: z.array(z.string()).optional(),
@@ -108,6 +109,45 @@ const governanceSettingsSchema = z
     force_required_for_stale_lock: z.boolean().optional(),
 })
     .optional();
+const extensionPolicyOverrideSchema = z.object({
+    name: z.string(),
+    disabled: z.boolean().optional(),
+    require_trusted: z.boolean().optional(),
+    require_provenance: z.boolean().optional(),
+    sandbox_profile: z.union([z.literal("none"), z.literal("restricted"), z.literal("strict")]).optional(),
+    allowed_capabilities: z.array(z.string()).optional(),
+    blocked_capabilities: z.array(z.string()).optional(),
+    allowed_surfaces: z.array(z.string()).optional(),
+    blocked_surfaces: z.array(z.string()).optional(),
+    allowed_commands: z.array(z.string()).optional(),
+    blocked_commands: z.array(z.string()).optional(),
+    allowed_actions: z.array(z.string()).optional(),
+    blocked_actions: z.array(z.string()).optional(),
+    allowed_services: z.array(z.string()).optional(),
+    blocked_services: z.array(z.string()).optional(),
+});
+const extensionPolicySchema = z
+    .object({
+    mode: z.union([z.literal("off"), z.literal("warn"), z.literal("enforce")]).optional(),
+    trust_mode: z.union([z.literal("off"), z.literal("warn"), z.literal("enforce")]).optional(),
+    require_provenance: z.boolean().optional(),
+    trusted_extensions: z.array(z.string()).optional(),
+    default_sandbox_profile: z.union([z.literal("none"), z.literal("restricted"), z.literal("strict")]).optional(),
+    allowed_extensions: z.array(z.string()).optional(),
+    blocked_extensions: z.array(z.string()).optional(),
+    allowed_capabilities: z.array(z.string()).optional(),
+    blocked_capabilities: z.array(z.string()).optional(),
+    allowed_surfaces: z.array(z.string()).optional(),
+    blocked_surfaces: z.array(z.string()).optional(),
+    allowed_commands: z.array(z.string()).optional(),
+    blocked_commands: z.array(z.string()).optional(),
+    allowed_actions: z.array(z.string()).optional(),
+    blocked_actions: z.array(z.string()).optional(),
+    allowed_services: z.array(z.string()).optional(),
+    blocked_services: z.array(z.string()).optional(),
+    extension_overrides: z.array(extensionPolicyOverrideSchema).optional(),
+})
+    .optional();
 const settingsSchema = z.object({
     version: z.number().int(),
     id_prefix: z.string(),
@@ -185,6 +225,7 @@ const settingsSchema = z.object({
     extensions: z.object({
         enabled: z.array(z.string()),
         disabled: z.array(z.string()),
+        policy: extensionPolicySchema,
     }),
     search: z.object({
         score_threshold: z.number(),
@@ -285,6 +326,123 @@ function hasExplicitItemFormat(raw) {
 function normalizeStringList(values) {
     return [...new Set((values ?? []).map((value) => value.trim()).filter((value) => value.length > 0))].sort((left, right) => left.localeCompare(right));
 }
+function normalizeLowerStringList(values) {
+    return [...new Set((values ?? []).map((value) => value.trim().toLowerCase()).filter((value) => value.length > 0))].sort((left, right) => left.localeCompare(right));
+}
+function normalizeExtensionPolicyMode(value) {
+    if (value === "off" || value === "warn" || value === "enforce") {
+        return value;
+    }
+    return SETTINGS_DEFAULTS.extensions.policy.mode;
+}
+function normalizeExtensionTrustMode(value) {
+    if (value === "off" || value === "warn" || value === "enforce") {
+        return value;
+    }
+    return SETTINGS_DEFAULTS.extensions.policy.trust_mode;
+}
+function normalizeExtensionSandboxProfile(value) {
+    if (value === "none" || value === "restricted" || value === "strict") {
+        return value;
+    }
+    return SETTINGS_DEFAULTS.extensions.policy.default_sandbox_profile;
+}
+function normalizeExtensionPolicyOverride(override) {
+    const name = override.name.trim().toLowerCase();
+    if (name.length === 0) {
+        return null;
+    }
+    const normalized = {
+        name,
+    };
+    if (override.disabled === true) {
+        normalized.disabled = true;
+    }
+    if (override.require_trusted === true) {
+        normalized.require_trusted = true;
+    }
+    if (override.require_provenance === true) {
+        normalized.require_provenance = true;
+    }
+    if (override.sandbox_profile !== undefined) {
+        normalized.sandbox_profile = normalizeExtensionSandboxProfile(override.sandbox_profile);
+    }
+    const allowedCapabilities = normalizeLowerStringList(override.allowed_capabilities);
+    const blockedCapabilities = normalizeLowerStringList(override.blocked_capabilities);
+    const allowedSurfaces = normalizeLowerStringList(override.allowed_surfaces);
+    const blockedSurfaces = normalizeLowerStringList(override.blocked_surfaces);
+    const allowedCommands = normalizeLowerStringList(override.allowed_commands);
+    const blockedCommands = normalizeLowerStringList(override.blocked_commands);
+    const allowedActions = normalizeLowerStringList(override.allowed_actions);
+    const blockedActions = normalizeLowerStringList(override.blocked_actions);
+    const allowedServices = normalizeLowerStringList(override.allowed_services);
+    const blockedServices = normalizeLowerStringList(override.blocked_services);
+    if (allowedCapabilities.length > 0) {
+        normalized.allowed_capabilities = allowedCapabilities;
+    }
+    if (blockedCapabilities.length > 0) {
+        normalized.blocked_capabilities = blockedCapabilities;
+    }
+    if (allowedSurfaces.length > 0) {
+        normalized.allowed_surfaces = allowedSurfaces;
+    }
+    if (blockedSurfaces.length > 0) {
+        normalized.blocked_surfaces = blockedSurfaces;
+    }
+    if (allowedCommands.length > 0) {
+        normalized.allowed_commands = allowedCommands;
+    }
+    if (blockedCommands.length > 0) {
+        normalized.blocked_commands = blockedCommands;
+    }
+    if (allowedActions.length > 0) {
+        normalized.allowed_actions = allowedActions;
+    }
+    if (blockedActions.length > 0) {
+        normalized.blocked_actions = blockedActions;
+    }
+    if (allowedServices.length > 0) {
+        normalized.allowed_services = allowedServices;
+    }
+    if (blockedServices.length > 0) {
+        normalized.blocked_services = blockedServices;
+    }
+    return normalized;
+}
+function normalizeExtensionPolicyOverrides(overrides) {
+    const dedupedByName = new Map();
+    for (const override of overrides ?? []) {
+        const normalized = normalizeExtensionPolicyOverride(override);
+        if (!normalized) {
+            continue;
+        }
+        dedupedByName.set(normalized.name, normalized);
+    }
+    return [...dedupedByName.values()].sort((left, right) => left.name.localeCompare(right.name));
+}
+function normalizeExtensionPolicySettings(policy) {
+    const defaults = SETTINGS_DEFAULTS.extensions.policy;
+    return {
+        mode: normalizeExtensionPolicyMode(policy?.mode),
+        trust_mode: normalizeExtensionTrustMode(policy?.trust_mode),
+        require_provenance: policy?.require_provenance === true,
+        trusted_extensions: normalizeLowerStringList(policy?.trusted_extensions ?? defaults.trusted_extensions),
+        default_sandbox_profile: normalizeExtensionSandboxProfile(policy?.default_sandbox_profile),
+        allowed_extensions: normalizeLowerStringList(policy?.allowed_extensions ?? defaults.allowed_extensions),
+        blocked_extensions: normalizeLowerStringList(policy?.blocked_extensions ?? defaults.blocked_extensions),
+        allowed_capabilities: normalizeLowerStringList(policy?.allowed_capabilities ?? defaults.allowed_capabilities),
+        blocked_capabilities: normalizeLowerStringList(policy?.blocked_capabilities ?? defaults.blocked_capabilities),
+        allowed_surfaces: normalizeLowerStringList(policy?.allowed_surfaces ?? defaults.allowed_surfaces),
+        blocked_surfaces: normalizeLowerStringList(policy?.blocked_surfaces ?? defaults.blocked_surfaces),
+        allowed_commands: normalizeLowerStringList(policy?.allowed_commands ?? defaults.allowed_commands),
+        blocked_commands: normalizeLowerStringList(policy?.blocked_commands ?? defaults.blocked_commands),
+        allowed_actions: normalizeLowerStringList(policy?.allowed_actions ?? defaults.allowed_actions),
+        blocked_actions: normalizeLowerStringList(policy?.blocked_actions ?? defaults.blocked_actions),
+        allowed_services: normalizeLowerStringList(policy?.allowed_services ?? defaults.allowed_services),
+        blocked_services: normalizeLowerStringList(policy?.blocked_services ?? defaults.blocked_services),
+        extension_overrides: normalizeExtensionPolicyOverrides(policy?.extension_overrides ?? defaults.extension_overrides),
+    };
+}
 function normalizeValidationMetadataRequiredFields(values) {
     const normalized = [...new Set((values ?? []).map((value) => value.trim().toLowerCase().replaceAll("-", "_")))]
         .filter((value) => value.length > 0)
@@ -396,7 +554,7 @@ function mergeSettings(raw) {
     return {
         ...defaults,
         ...settings,
-        item_format: settings.item_format ?? defaults.item_format,
+        item_format: settings.item_format === "json_markdown" ? "toon" : (settings.item_format ?? defaults.item_format),
         locks: { ...defaults.locks, ...settings.locks },
         output: { ...defaults.output, ...settings.output },
         history: { ...defaults.history, ...(settings.history ?? {}) },
@@ -446,6 +604,7 @@ function mergeSettings(raw) {
         extensions: {
             enabled: [...settings.extensions.enabled],
             disabled: [...settings.extensions.disabled],
+            policy: normalizeExtensionPolicySettings(settings.extensions.policy ?? defaults.extensions.policy),
         },
         search: { ...defaults.search, ...settings.search },
         providers: {
@@ -463,6 +622,7 @@ export function serializeSettings(settings) {
     const governance = resolveGovernanceKnobs(settings);
     const normalizedSettings = {
         ...settings,
+        item_format: "toon",
         validation: {
             ...settings.validation,
             parent_reference: governance.parent_reference,
@@ -482,6 +642,20 @@ export function serializeSettings(settings) {
             definitions: normalizeItemTypeDefinitions(settings.item_types?.definitions),
         },
         schema: normalizeRuntimeSchemaSettings(settings.schema),
+        context: {
+            default_depth: settings.context?.default_depth ?? SETTINGS_DEFAULTS.context.default_depth,
+            activity_limit: settings.context?.activity_limit ?? SETTINGS_DEFAULTS.context.activity_limit,
+            stale_threshold_days: settings.context?.stale_threshold_days ?? SETTINGS_DEFAULTS.context.stale_threshold_days,
+            sections: {
+                ...SETTINGS_DEFAULTS.context.sections,
+                ...(settings.context?.sections ?? {}),
+            },
+        },
+        extensions: {
+            enabled: normalizeStringList(settings.extensions?.enabled),
+            disabled: normalizeStringList(settings.extensions?.disabled),
+            policy: normalizeExtensionPolicySettings(settings.extensions?.policy),
+        },
     };
     const ordered = orderObject({
         ...normalizedSettings,
@@ -557,7 +731,44 @@ export function serializeSettings(settings) {
         "sections",
     ]);
     ordered.context.sections = orderObject((ordered.context.sections ?? {}), ["hierarchy", "activity", "progress", "blockers", "files", "workload", "staleness", "tests"]);
-    ordered.extensions = orderObject(ordered.extensions, ["enabled", "disabled"]);
+    ordered.extensions = orderObject(ordered.extensions, ["enabled", "disabled", "policy"]);
+    ordered.extensions.policy = orderObject((ordered.extensions.policy ?? {}), [
+        "mode",
+        "trust_mode",
+        "require_provenance",
+        "trusted_extensions",
+        "default_sandbox_profile",
+        "allowed_extensions",
+        "blocked_extensions",
+        "allowed_capabilities",
+        "blocked_capabilities",
+        "allowed_surfaces",
+        "blocked_surfaces",
+        "allowed_commands",
+        "blocked_commands",
+        "allowed_actions",
+        "blocked_actions",
+        "allowed_services",
+        "blocked_services",
+        "extension_overrides",
+    ]);
+    ordered.extensions.policy.extension_overrides = (ordered.extensions.policy.extension_overrides ?? []).map((entry) => orderObject((entry ?? {}), [
+        "name",
+        "disabled",
+        "require_trusted",
+        "require_provenance",
+        "sandbox_profile",
+        "allowed_capabilities",
+        "blocked_capabilities",
+        "allowed_surfaces",
+        "blocked_surfaces",
+        "allowed_commands",
+        "blocked_commands",
+        "allowed_actions",
+        "blocked_actions",
+        "allowed_services",
+        "blocked_services",
+    ]));
     ordered.search = orderObject(ordered.search, [
         "score_threshold",
         "hybrid_semantic_weight",
@@ -616,6 +827,9 @@ export async function readSettingsWithMetadata(pmRoot) {
                 has_explicit_item_format: hasExplicitItemFormat(parsed),
             },
             warnings: [
+                ...(validated.data.item_format === "json_markdown"
+                    ? ["settings_item_format_legacy_json_markdown_coerced_to_toon"]
+                    : []),
                 ...schemaScaffold.created_paths.map((createdPath) => `runtime_schema_bootstrap_created:${createdPath}`),
                 ...loadedSchemaSections.warnings,
             ],