@unbrained/pm-cli 2026.5.6 → 2026.5.11

package/dist/cli/commands/files.js

@@ -23,13 +23,20 @@ function ensureScope(raw) {
     }
     return value;
 }
+function looksLikeStructuredPathEntry(raw) {
+    if (raw.startsWith("```") || raw.includes("\n")) {
+        return true;
+    }
+    return /^(?:[-*+]\s+)?(?:path|scope|note)\s*[:=]/i.test(raw);
+}
 function parseAddEntries(raw) {
     if (!raw)
         return [];
     return raw.map((entry) => {
-        const kv = parseCsvKv(entry, "--add");
+        const trimmed = entry.trim();
+        const kv = looksLikeStructuredPathEntry(trimmed) ? parseCsvKv(entry, "--add") : { path: trimmed };
         if (!kv.path) {
-            throw new PmCliError("--add requires path=<value>", EXIT_CODE.USAGE);
+            throw new PmCliError("--add requires path=<value> or a bare file path", EXIT_CODE.USAGE);
         }
         return {
             path: kv.path,
@@ -239,7 +246,7 @@ function collectTextReferences(value, fieldPath, references) {
 }
 function collectItemTextReferences(document) {
     const references = [];
-    collectTextReferences(document.front_matter, "front_matter", references);
+    collectTextReferences(document.metadata, "metadata", references);
     collectTextReferences(document.body, "body", references);
     return references;
 }
@@ -304,7 +311,7 @@ async function resolveDiscoveredFile(rawPath, projectRoot) {
     };
 }
 async function discoverReferencedFiles(document, projectRoot) {
-    const existingResolvedKeys = new Set((document.front_matter.files ?? []).map((entry) => linkedFileResolvedKey(entry, projectRoot)));
+    const existingResolvedKeys = new Set((document.metadata.files ?? []).map((entry) => linkedFileResolvedKey(entry, projectRoot)));
     const grouped = new Map();
     const rawReferences = extractRawPathReferences(collectItemTextReferences(document));
     for (const reference of rawReferences) {
@@ -369,7 +376,7 @@ export async function runFiles(id, options, global) {
             throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);
         }
         const loaded = await readLocatedItem(located, { schema: settings.schema });
-        const files = loaded.document.front_matter.files ?? [];
+        const files = loaded.document.metadata.files ?? [];
         return {
             id: located.id,
             files,
@@ -394,7 +401,7 @@ export async function runFiles(id, options, global) {
         message: options.message,
         force: options.force,
         mutate(document) {
-            const next = [...(document.front_matter.files ?? [])];
+            const next = [...(document.metadata.files ?? [])];
             let migrationCount = 0;
             if (migrations.length > 0) {
                 for (let index = 0; index < next.length; index += 1) {
@@ -432,10 +439,10 @@ export async function runFiles(id, options, global) {
             const deduped = dedupeLinkedFiles(next);
             const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);
             if (normalized.length > 0) {
-                document.front_matter.files = normalized;
+                document.metadata.files = normalized;
             }
             else {
-                delete document.front_matter.files;
+                delete document.metadata.files;
             }
             return { changedFields: ["files"], warnings: migrationCount > 0 ? [`path_migrations_applied:${migrationCount}`] : [] };
         },
@@ -477,7 +484,7 @@ export async function runFilesDiscover(id, options, global) {
     const requestedApply = options.apply === true;
     const note = options.note?.trim() || "discovered from item text";
     if (!requestedApply || addableCandidates.length === 0) {
-        const files = loaded.document.front_matter.files ?? [];
+        const files = loaded.document.metadata.files ?? [];
         return {
             id: located.id,
             files,
@@ -508,7 +515,7 @@ export async function runFilesDiscover(id, options, global) {
         message: options.message ?? "Discover referenced file links",
         force: options.force,
         mutate(document) {
-            const next = [...(document.front_matter.files ?? [])];
+            const next = [...(document.metadata.files ?? [])];
             const existingResolvedKeys = new Set(next.map((entry) => linkedFileResolvedKey(entry, process.cwd())));
             const appliedAdds = [];
             for (const add of discoveredAdds) {
@@ -523,10 +530,10 @@ export async function runFilesDiscover(id, options, global) {
             const deduped = dedupeLinkedFiles(next);
             const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);
             if (normalized.length > 0) {
-                document.front_matter.files = normalized;
+                document.metadata.files = normalized;
             }
             else {
-                delete document.front_matter.files;
+                delete document.metadata.files;
             }
             return {
                 changedFields: appliedAdds.length > 0 ? ["files"] : [],

package/dist/cli/commands/files.js.map

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fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport fg from \"fast-glob\";\nimport { pathExists } from \"../../core/fs/fs-utils.js\";\nimport { getActiveExtensionRegistrations } from \"../../core/extensions/index.js\";\nimport { createStdinTokenResolver, parseCsvKv } from \"../../core/item/parse.js\";\nimport { resolveItemTypeRegistry } from \"../../core/item/type-registry.js\";\nimport { EXIT_CODE } from \"../../core/shared/constants.js\";\nimport type { GlobalOptions } from \"../../core/shared/command-types.js\";\nimport { PmCliError } from \"../../core/shared/errors.js\";\nimport { listAllFrontMatter, locateItem, mutateItem, readLocatedItem } from \"../../core/store/item-store.js\";\nimport { getSettingsPath, resolvePmRoot } from \"../../core/store/paths.js\";\nimport { readSettings } from \"../../core/store/settings.js\";\nimport { SCOPE_VALUES } from \"../../types/index.js\";\nimport type { ItemDocument, LinkedFile, LinkScope } from 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\"addable\" | \"already_linked\";\n  source_count: number;\n  source_fields: string[];\n  original_paths: string[];\n}\n\nexport interface FilesResult {\n  id: string;\n  files: LinkedFile[];\n  changed: boolean;\n  count: number;\n  migrations_applied?: number;\n  validation?: LinkedPathValidation;\n  audit?: LinkedPathAuditEntry[];\n}\n\nexport interface FilesDiscoverResult {\n  id: string;\n  files: LinkedFile[];\n  changed: boolean;\n  apply: boolean;\n  count: number;\n  candidate_count: number;\n  addable_count: number;\n  added_count: number;\n  skipped_existing_count: number;\n  candidates: FilesDiscoveryCandidate[];\n  added: LinkedFile[];\n  skipped_existing: FilesDiscoveryCandidate[];\n}\n\ninterface TextReference {\n  field: string;\n  value: string;\n}\n\ninterface RawPathReference {\n  field: string;\n  value: string;\n}\n\nfunction resolveAuthor(candidate: string | undefined, fallback: string): string {\n  const resolved = candidate ?? process.env.PM_AUTHOR ?? fallback;\n  const trimmed = resolved.trim();\n  return trimmed || \"unknown\";\n}\n\nfunction ensureScope(raw: string | undefined): LinkScope {\n  const value = (raw ?? \"project\") as LinkScope;\n  if (!SCOPE_VALUES.includes(value)) {\n    throw new PmCliError(`Invalid scope \"${raw}\"`, EXIT_CODE.USAGE);\n  }\n  return value;\n}\n\nfunction parseAddEntries(raw: string[] | undefined): LinkedFile[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const kv = parseCsvKv(entry, \"--add\");\n    if (!kv.path) {\n      throw new PmCliError(\"--add requires path=<value>\", EXIT_CODE.USAGE);\n    }\n    return {\n      path: kv.path,\n      scope: ensureScope(kv.scope),\n      note: kv.note?.trim() || undefined,\n    };\n  });\n}\n\nfunction parseAddGlobEntries(raw: string[] | undefined): AddGlobEntry[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const trimmed = entry.trim();\n    if (!trimmed) {\n      throw new PmCliError(\"--add-glob requires a glob pattern value\", EXIT_CODE.USAGE);\n    }\n    if (trimmed.includes(\"=\") || /^(?:[-*+]\\s+)?(?:pattern|glob|path)\\s*[:=]/i.test(trimmed) || trimmed.startsWith(\"```\")) {\n      const kv = parseCsvKv(trimmed, \"--add-glob\");\n      const pattern = kv.pattern?.trim() || kv.glob?.trim() || kv.path?.trim();\n      if (!pattern) {\n        throw new PmCliError(\"--add-glob key/value form requires pattern=<glob>\", EXIT_CODE.USAGE);\n      }\n      return {\n        pattern,\n        scope: ensureScope(kv.scope),\n        note: kv.note?.trim() || undefined,\n      };\n    }\n    return {\n      pattern: trimmed,\n      scope: \"project\",\n    };\n  });\n}\n\nfunction parseRemoveEntries(raw: string[] | undefined): string[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const trimmed = entry.trim();\n    if (!trimmed) {\n      throw new PmCliError(\"--remove requires a path value\", EXIT_CODE.USAGE);\n    }\n    if (trimmed.includes(\"=\") || /^(?:[-*+]\\s+)?path\\s*[:=]/i.test(trimmed) || trimmed.startsWith(\"```\")) {\n      const kv = parseCsvKv(trimmed, \"--remove\");\n      if (!kv.path) {\n        throw new PmCliError(\"--remove key/value form requires path=<value>\", EXIT_CODE.USAGE);\n      }\n      return kv.path;\n    }\n    return trimmed;\n  });\n}\n\nfunction parseMigrateEntries(raw: string[] | undefined): PathMigration[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const kv = parseCsvKv(entry, \"--migrate\");\n    const from = kv.from?.trim();\n    const to = kv.to?.trim();\n    if (!from || !to) {\n      throw new PmCliError(\"--migrate requires from=<value> and to=<value>\", EXIT_CODE.USAGE);\n    }\n    return { from, to };\n  });\n}\n\nfunction applyPathMigrations(filePath: string, migrations: PathMigration[]): string {\n  let next = filePath;\n  for (const migration of migrations) {\n    if (next.startsWith(migration.from)) {\n      next = `${migration.to}${next.slice(migration.from.length)}`;\n    }\n  }\n  return next;\n}\n\nfunction normalizeLinkedPath(value: string): string {\n  return value.split(path.sep).join(\"/\");\n}\n\nfunction normalizeCandidatePathForOutput(value: string): string {\n  return normalizeLinkedPath(path.normalize(value));\n}\n\nfunction isPathInside(parentPath: string, childPath: string): boolean {\n  const relative = path.relative(parentPath, childPath);\n  return relative === \"\" || (!relative.startsWith(\"..\") && !path.isAbsolute(relative));\n}\n\nasync function realpathForContainment(inputPath: string): Promise<string> {\n  try {\n    return await fs.realpath(inputPath);\n  } catch {\n    return path.resolve(inputPath);\n  }\n}\n\nfunction linkedFileResolvedKey(linkedFile: Pick<LinkedFile, \"path\" | \"scope\">, projectRoot: string): string {\n  const resolvedPath = path.isAbsolute(linkedFile.path)\n    ? path.resolve(linkedFile.path)\n    : path.resolve(projectRoot, linkedFile.path);\n  return `${normalizeCandidatePathForOutput(resolvedPath)}::${linkedFile.scope}`;\n}\n\nasync function expandAddGlobEntries(entries: AddGlobEntry[]): Promise<LinkedFile[]> {\n  const expanded: LinkedFile[] = [];\n  for (const entry of entries) {\n    const absolutePattern = path.isAbsolute(entry.pattern);\n    const matches = await fg(entry.pattern, {\n      cwd: process.cwd(),\n      absolute: absolutePattern,\n      onlyFiles: true,\n      dot: true,\n      unique: true,\n      followSymbolicLinks: true,\n    });\n    const sortedMatches = [...new Set(matches.map((match) => normalizeLinkedPath(path.normalize(match))))].sort((left, right) =>\n      left.localeCompare(right),\n    );\n    for (const matchedPath of sortedMatches) {\n      expanded.push({\n        path: matchedPath,\n        scope: entry.scope,\n        note: entry.note,\n      });\n    }\n  }\n  return expanded;\n}\n\nfunction fileKey(value: Pick<LinkedFile, \"path\" | \"scope\">): string {\n  return `${value.path}::${value.scope}`;\n}\n\nfunction sortLinkedFiles(files: LinkedFile[]): LinkedFile[] {\n  return [...files].sort((left, right) => {\n    const byPath = left.path.localeCompare(right.path);\n    if (byPath !== 0) return byPath;\n    return left.scope.localeCompare(right.scope);\n  });\n}\n\nfunction dedupeLinkedFiles(files: LinkedFile[]): LinkedFile[] {\n  return [...new Map(files.map((entry) => [fileKey(entry), entry])).values()].map((entry) => ({\n    ...entry,\n    note: entry.note?.trim() || undefined,\n  }));\n}\n\nasync function validateLinkedFilePaths(paths: string[]): Promise<LinkedPathValidation> {\n  const uniquePaths = [...new Set(paths)].sort((left, right) => left.localeCompare(right));\n  const existingFiles: string[] = [];\n  const missingPaths: string[] = [];\n  const nonFilePaths: string[] = [];\n  for (const relativePath of uniquePaths) {\n    const resolvedPath = path.isAbsolute(relativePath) ? relativePath : path.resolve(process.cwd(), relativePath);\n    try {\n      const stats = await fs.stat(resolvedPath);\n      if (stats.isFile()) {\n        existingFiles.push(relativePath);\n      } else {\n        nonFilePaths.push(relativePath);\n      }\n    } catch (error: unknown) {\n      if (typeof error === \"object\" && error !== null && \"code\" in error && (error as { code?: string }).code === \"ENOENT\") {\n        missingPaths.push(relativePath);\n        continue;\n      }\n      nonFilePaths.push(relativePath);\n    }\n  }\n  return {\n    checked: uniquePaths.length,\n    existing_files: existingFiles,\n    missing_paths: missingPaths,\n    non_file_paths: nonFilePaths,\n  };\n}\n\nfunction buildLinkedFileAudit(paths: string[], allItems: Array<{ id: string; files?: LinkedFile[] }>): LinkedPathAuditEntry[] {\n  const index = new Map<string, Set<string>>();\n  for (const item of allItems) {\n    for (const linkedFile of item.files ?? []) {\n      const seen = index.get(linkedFile.path) ?? new Set<string>();\n      seen.add(item.id);\n      index.set(linkedFile.path, seen);\n    }\n  }\n  return [...new Set(paths)]\n    .sort((left, right) => left.localeCompare(right))\n    .map((linkedPath) => {\n      const linkedIds = [...(index.get(linkedPath) ?? new Set<string>())].sort((left, right) => left.localeCompare(right));\n      return {\n        path: linkedPath,\n        linked_by_count: linkedIds.length,\n        linked_item_ids: linkedIds,\n      };\n    });\n}\n\nfunction collectTextReferences(value: unknown, fieldPath: string, references: TextReference[]): void {\n  if (typeof value === \"string\") {\n    const trimmed = value.trim();\n    if (trimmed.length > 0) {\n      references.push({ field: fieldPath, value: trimmed });\n    }\n    return;\n  }\n  if (Array.isArray(value)) {\n    value.forEach((entry, index) => collectTextReferences(entry, `${fieldPath}[${index}]`, references));\n    return;\n  }\n  if (typeof value === \"object\" && value !== null) {\n    for (const [key, nested] of Object.entries(value)) {\n      collectTextReferences(nested, fieldPath ? `${fieldPath}.${key}` : key, references);\n    }\n  }\n}\n\nfunction collectItemTextReferences(document: ItemDocument): TextReference[] {\n  const references: TextReference[] = [];\n  collectTextReferences(document.front_matter, \"front_matter\", references);\n  collectTextReferences(document.body, \"body\", references);\n  return references;\n}\n\nfunction cleanupPathToken(value: string): string {\n  let next = value.trim();\n  next = next.replace(/^[`\"'<([{]+/u, \"\");\n  next = next.replace(/[`\"'>)\\]},;!?]+$/u, \"\");\n  next = next.replace(/[.]+$/u, \"\");\n  next = next.replace(/:(?:\\d+)(?::\\d+)?$/u, \"\");\n  next = next.replace(/[.]+$/u, \"\");\n  return next;\n}\n\nfunction extractRawPathReferences(references: TextReference[]): RawPathReference[] {\n  const rawReferences: RawPathReference[] = [];\n  const absolutePattern = /(?:[A-Za-z]:[\\\\/]|\\/)[^\\s\"'`<>()\\[\\]{},;]+/gu;\n  const relativePattern =\n    /(?:\\.{1,2}[\\\\/])?(?:(?:[A-Za-z0-9_.@-]+[\\\\/])+[A-Za-z0-9_.@-]+|[A-Za-z0-9_.@-]+\\.[A-Za-z0-9][A-Za-z0-9._-]*)/gu;\n  for (const reference of references) {\n    const seenInField = new Set<string>();\n    for (const pattern of [absolutePattern, relativePattern]) {\n      pattern.lastIndex = 0;\n      for (const match of reference.value.matchAll(pattern)) {\n        const token = cleanupPathToken(match[0] ?? \"\");\n        if (!token || seenInField.has(token)) {\n          continue;\n        }\n        seenInField.add(token);\n        rawReferences.push({ field: reference.field, value: token });\n      }\n    }\n  }\n  return rawReferences;\n}\n\nasync function resolveDiscoveredFile(\n  rawPath: string,\n  projectRoot: string,\n): Promise<Pick<LinkedFile, \"path\" | \"scope\"> | undefined> {\n  const absolutePath = path.isAbsolute(rawPath) ? path.resolve(rawPath) : path.resolve(projectRoot, rawPath);\n  let stats;\n  try {\n    stats = await fs.stat(absolutePath);\n  } catch {\n    return undefined;\n  }\n  if (!stats.isFile()) {\n    return undefined;\n  }\n  const [canonicalProjectRoot, canonicalAbsolutePath] = await Promise.all([\n    realpathForContainment(projectRoot),\n    realpathForContainment(absolutePath),\n  ]);\n  if (isPathInside(canonicalProjectRoot, canonicalAbsolutePath)) {\n    const relativePath = path.relative(canonicalProjectRoot, canonicalAbsolutePath);\n    if (!relativePath || relativePath.startsWith(\"..\") || path.isAbsolute(relativePath)) {\n      return undefined;\n    }\n    return {\n      path: normalizeCandidatePathForOutput(relativePath),\n      scope: \"project\",\n    };\n  }\n  return {\n    path: normalizeCandidatePathForOutput(absolutePath),\n    scope: \"global\",\n  };\n}\n\nasync function discoverReferencedFiles(document: ItemDocument, projectRoot: string): Promise<FilesDiscoveryCandidate[]> {\n  const existingResolvedKeys = new Set((document.front_matter.files ?? []).map((entry) => linkedFileResolvedKey(entry, projectRoot)));\n  const grouped = new Map<\n    string,\n    {\n      path: string;\n      scope: LinkScope;\n      sourceFields: Set<string>;\n      originalPaths: Set<string>;\n      sourceCount: number;\n    }\n  >();\n  const rawReferences = extractRawPathReferences(collectItemTextReferences(document));\n  for (const reference of rawReferences) {\n    const resolved = await resolveDiscoveredFile(reference.value, projectRoot);\n    if (!resolved) {\n      continue;\n    }\n    const key = linkedFileResolvedKey(resolved, projectRoot);\n    const existing = grouped.get(key) ?? {\n      path: resolved.path,\n      scope: resolved.scope,\n      sourceFields: new Set<string>(),\n      originalPaths: new Set<string>(),\n      sourceCount: 0,\n    };\n    existing.sourceFields.add(reference.field);\n    existing.originalPaths.add(reference.value);\n    existing.sourceCount += 1;\n    grouped.set(key, existing);\n  }\n  return [...grouped.entries()]\n    .map(([key, entry]) => ({\n      path: entry.path,\n      scope: entry.scope,\n      status: existingResolvedKeys.has(key) ? (\"already_linked\" as const) : (\"addable\" as const),\n      source_count: entry.sourceCount,\n      source_fields: [...entry.sourceFields].sort((left, right) => left.localeCompare(right)),\n      original_paths: [...entry.originalPaths].sort((left, right) => left.localeCompare(right)),\n    }))\n    .sort((left, right) => {\n      const byStatus = left.status.localeCompare(right.status);\n      if (byStatus !== 0) return byStatus;\n      const byPath = left.path.localeCompare(right.path);\n      if (byPath !== 0) return byPath;\n      return left.scope.localeCompare(right.scope);\n    });\n}\n\nexport async function runFiles(id: string, options: FilesCommandOptions, global: GlobalOptions): Promise<FilesResult> {\n  const stdinResolver = createStdinTokenResolver();\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const resolvedAdds = await stdinResolver.resolveList(options.add, \"--add\");\n  const resolvedAddGlobs = await stdinResolver.resolveList(options.addGlob, \"--add-glob\");\n  const resolvedRemoves = await stdinResolver.resolveList(options.remove, \"--remove\");\n  const resolvedMigrations = await stdinResolver.resolveList(options.migrate, \"--migrate\");\n  const parsedAdds = parseAddEntries(resolvedAdds);\n  const addGlobs = parseAddGlobEntries(resolvedAddGlobs);\n  const expandedGlobAdds = await expandAddGlobEntries(addGlobs);\n  const adds = [...parsedAdds, ...expandedGlobAdds];\n  const removes = parseRemoveEntries(resolvedRemoves);\n  const migrations = parseMigrateEntries(resolvedMigrations);\n  const shouldMutate = adds.length > 0 || removes.length > 0 || migrations.length > 0;\n\n  if (!shouldMutate) {\n    const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n    if (!located) {\n      throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n    }\n    const loaded = await readLocatedItem(located, { schema: settings.schema });\n    const files = loaded.document.front_matter.files ?? [];\n    return {\n      id: located.id,\n      files,\n      changed: false,\n      count: files.length,\n      validation: options.validatePaths ? await validateLinkedFilePaths(files.map((entry) => entry.path)) : undefined,\n      audit: options.audit\n        ? buildLinkedFileAudit(\n            files.map((entry) => entry.path),\n            (await listAllFrontMatter(pmRoot, settings.item_format, typeRegistry.type_to_folder, undefined, settings.schema)).map((entry) => ({\n              id: entry.id,\n              files: entry.files,\n            })),\n          )\n        : undefined,\n    };\n  }\n\n  const author = resolveAuthor(options.author, settings.author_default);\n  const result = await mutateItem({\n    pmRoot,\n    settings,\n    id,\n    op: \"files_add\",\n    author,\n    message: options.message,\n    force: options.force,\n    mutate(document) {\n      const next = [...(document.front_matter.files ?? [])];\n      let migrationCount = 0;\n      if (migrations.length > 0) {\n        for (let index = 0; index < next.length; index += 1) {\n          const migratedPath = applyPathMigrations(next[index].path, migrations);\n          if (migratedPath !== next[index].path) {\n            next[index] = { ...next[index], path: migratedPath };\n            migrationCount += 1;\n          }\n        }\n      }\n      const migratedAdds = adds.map((entry) => {\n        const migratedPath = applyPathMigrations(entry.path, migrations);\n        if (migratedPath !== entry.path) {\n          migrationCount += 1;\n        }\n        return {\n          ...entry,\n          path: migratedPath,\n        };\n      });\n      const migratedRemoves = removes.map((entry) => applyPathMigrations(entry, migrations));\n      for (const add of migratedAdds) {\n        const exists = next.some((entry) => entry.path === add.path && entry.scope === add.scope);\n        if (!exists) {\n          next.push(add);\n        }\n      }\n      if (migratedRemoves.length > 0) {\n        for (let i = next.length - 1; i >= 0; i -= 1) {\n          if (migratedRemoves.includes(next[i].path)) {\n            next.splice(i, 1);\n          }\n        }\n      }\n      const deduped = dedupeLinkedFiles(next);\n      const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);\n      if (normalized.length > 0) {\n        document.front_matter.files = normalized;\n      } else {\n        delete document.front_matter.files;\n      }\n      return { changedFields: [\"files\"], warnings: migrationCount > 0 ? [`path_migrations_applied:${migrationCount}`] : [] };\n    },\n  });\n\n  const files = result.item.files ?? [];\n  const migrationWarning = result.warnings.find((warning) => warning.startsWith(\"path_migrations_applied:\"));\n  const migrationCount = migrationWarning ? Number(migrationWarning.split(\":\")[1] ?? \"0\") : 0;\n  const allItems = options.audit\n    ? (await listAllFrontMatter(pmRoot, settings.item_format, typeRegistry.type_to_folder, undefined, settings.schema)).map((entry) => ({\n        id: entry.id,\n        files: entry.files,\n      }))\n    : [];\n  return {\n    id: result.item.id,\n    files,\n    changed: true,\n    count: files.length,\n    migrations_applied: migrationCount > 0 ? migrationCount : undefined,\n    validation: options.validatePaths ? await validateLinkedFilePaths(files.map((entry) => entry.path)) : undefined,\n    audit: options.audit ? buildLinkedFileAudit(files.map((entry) => entry.path), allItems) : undefined,\n  };\n}\n\nexport async function runFilesDiscover(\n  id: string,\n  options: FilesDiscoverOptions,\n  global: GlobalOptions,\n): Promise<FilesDiscoverResult> {\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n  if (!located) {\n    throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n  const loaded = await readLocatedItem(located, { schema: settings.schema });\n  const candidates = await discoverReferencedFiles(loaded.document, process.cwd());\n  const addableCandidates = candidates.filter((candidate) => candidate.status === \"addable\");\n  const skippedExisting = candidates.filter((candidate) => candidate.status === \"already_linked\");\n  const requestedApply = options.apply === true;\n  const note = options.note?.trim() || \"discovered from item text\";\n\n  if (!requestedApply || addableCandidates.length === 0) {\n    const files = loaded.document.front_matter.files ?? [];\n    return {\n      id: located.id,\n      files,\n      changed: false,\n      apply: requestedApply,\n      count: files.length,\n      candidate_count: candidates.length,\n      addable_count: addableCandidates.length,\n      added_count: 0,\n      skipped_existing_count: skippedExisting.length,\n      candidates,\n      added: [],\n      skipped_existing: skippedExisting,\n    };\n  }\n\n  const author = resolveAuthor(options.author, settings.author_default);\n  const discoveredAdds: LinkedFile[] = addableCandidates.map((candidate) => ({\n    path: candidate.path,\n    scope: candidate.scope,\n    note,\n  }));\n  const result = await mutateItem({\n    pmRoot,\n    settings,\n    id,\n    op: \"files_discover\",\n    author,\n    message: options.message ?? \"Discover referenced file links\",\n    force: options.force,\n    mutate(document) {\n      const next = [...(document.front_matter.files ?? [])];\n      const existingResolvedKeys = new Set(next.map((entry) => linkedFileResolvedKey(entry, process.cwd())));\n      const appliedAdds: LinkedFile[] = [];\n      for (const add of discoveredAdds) {\n        const resolvedKey = linkedFileResolvedKey(add, process.cwd());\n        if (existingResolvedKeys.has(resolvedKey)) {\n          continue;\n        }\n        next.push(add);\n        existingResolvedKeys.add(resolvedKey);\n        appliedAdds.push(add);\n      }\n      const deduped = dedupeLinkedFiles(next);\n      const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);\n      if (normalized.length > 0) {\n        document.front_matter.files = normalized;\n      } else {\n        delete document.front_matter.files;\n      }\n      return {\n        changedFields: appliedAdds.length > 0 ? [\"files\"] : [],\n        warnings: appliedAdds.length !== discoveredAdds.length ? [`files_discover_skipped_existing:${discoveredAdds.length - appliedAdds.length}`] : [],\n      };\n    },\n  });\n\n  const files = result.item.files ?? [];\n  const addedResolvedKeys = new Set(discoveredAdds.map((entry) => linkedFileResolvedKey(entry, process.cwd())));\n  const added = files.filter((entry) => addedResolvedKeys.has(linkedFileResolvedKey(entry, process.cwd())));\n  return {\n    id: result.item.id,\n    files,\n    changed: added.length > 0,\n    apply: true,\n    count: files.length,\n    candidate_count: candidates.length,\n    addable_count: addableCandidates.length,\n    added_count: added.length,\n    skipped_existing_count: skippedExisting.length,\n    candidates,\n    added,\n    skipped_existing: skippedExisting,\n  };\n}\n"]}
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fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport fg from \"fast-glob\";\nimport { pathExists } from \"../../core/fs/fs-utils.js\";\nimport { getActiveExtensionRegistrations } from \"../../core/extensions/index.js\";\nimport { createStdinTokenResolver, parseCsvKv } from \"../../core/item/parse.js\";\nimport { resolveItemTypeRegistry } from \"../../core/item/type-registry.js\";\nimport { EXIT_CODE } from \"../../core/shared/constants.js\";\nimport type { GlobalOptions } from \"../../core/shared/command-types.js\";\nimport { PmCliError } from \"../../core/shared/errors.js\";\nimport { listAllFrontMatter, locateItem, mutateItem, readLocatedItem } from \"../../core/store/item-store.js\";\nimport { getSettingsPath, resolvePmRoot } from \"../../core/store/paths.js\";\nimport { readSettings } from \"../../core/store/settings.js\";\nimport { SCOPE_VALUES } from \"../../types/index.js\";\nimport type { ItemDocument, LinkedFile, LinkScope } from \"../../types/index.js\";\n\nexport interface FilesCommandOptions {\n  add?: string[];\n  addGlob?: string[];\n  remove?: string[];\n  migrate?: string[];\n  list?: boolean;\n  appendStable?: boolean;\n  validatePaths?: boolean;\n  audit?: boolean;\n  author?: string;\n  message?: string;\n  force?: boolean;\n}\n\nexport interface FilesDiscoverOptions {\n  apply?: boolean;\n  appendStable?: boolean;\n  note?: string;\n  author?: string;\n  message?: string;\n  force?: boolean;\n}\n\ninterface PathMigration {\n  from: string;\n  to: string;\n}\n\ninterface AddGlobEntry {\n  pattern: string;\n  scope: LinkScope;\n  note?: string;\n}\n\ninterface LinkedPathValidation {\n  checked: number;\n  existing_files: string[];\n  missing_paths: string[];\n  non_file_paths: string[];\n}\n\ninterface LinkedPathAuditEntry {\n  path: string;\n  linked_by_count: number;\n  linked_item_ids: string[];\n}\n\nexport interface FilesDiscoveryCandidate {\n  path: string;\n  scope: LinkScope;\n  status: \"addable\" | \"already_linked\";\n  source_count: number;\n  source_fields: string[];\n  original_paths: string[];\n}\n\nexport interface FilesResult {\n  id: string;\n  files: LinkedFile[];\n  changed: boolean;\n  count: number;\n  migrations_applied?: number;\n  validation?: LinkedPathValidation;\n  audit?: LinkedPathAuditEntry[];\n}\n\nexport interface FilesDiscoverResult {\n  id: string;\n  files: LinkedFile[];\n  changed: boolean;\n  apply: boolean;\n  count: number;\n  candidate_count: number;\n  addable_count: number;\n  added_count: number;\n  skipped_existing_count: number;\n  candidates: FilesDiscoveryCandidate[];\n  added: LinkedFile[];\n  skipped_existing: FilesDiscoveryCandidate[];\n}\n\ninterface TextReference {\n  field: string;\n  value: string;\n}\n\ninterface RawPathReference {\n  field: string;\n  value: string;\n}\n\nfunction resolveAuthor(candidate: string | undefined, fallback: string): string {\n  const resolved = candidate ?? process.env.PM_AUTHOR ?? fallback;\n  const trimmed = resolved.trim();\n  return trimmed || \"unknown\";\n}\n\nfunction ensureScope(raw: string | undefined): LinkScope {\n  const value = (raw ?? \"project\") as LinkScope;\n  if (!SCOPE_VALUES.includes(value)) {\n    throw new PmCliError(`Invalid scope \"${raw}\"`, EXIT_CODE.USAGE);\n  }\n  return value;\n}\n\nfunction looksLikeStructuredPathEntry(raw: string): boolean {\n  if (raw.startsWith(\"```\") || raw.includes(\"\\n\")) {\n    return true;\n  }\n  return /^(?:[-*+]\\s+)?(?:path|scope|note)\\s*[:=]/i.test(raw);\n}\n\nfunction parseAddEntries(raw: string[] | undefined): LinkedFile[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const trimmed = entry.trim();\n    const kv = looksLikeStructuredPathEntry(trimmed) ? parseCsvKv(entry, \"--add\") : { path: trimmed };\n    if (!kv.path) {\n      throw new PmCliError(\"--add requires path=<value> or a bare file path\", EXIT_CODE.USAGE);\n    }\n    return {\n      path: kv.path,\n      scope: ensureScope(kv.scope),\n      note: kv.note?.trim() || undefined,\n    };\n  });\n}\n\nfunction parseAddGlobEntries(raw: string[] | undefined): AddGlobEntry[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const trimmed = entry.trim();\n    if (!trimmed) {\n      throw new PmCliError(\"--add-glob requires a glob pattern value\", EXIT_CODE.USAGE);\n    }\n    if (trimmed.includes(\"=\") || /^(?:[-*+]\\s+)?(?:pattern|glob|path)\\s*[:=]/i.test(trimmed) || trimmed.startsWith(\"```\")) {\n      const kv = parseCsvKv(trimmed, \"--add-glob\");\n      const pattern = kv.pattern?.trim() || kv.glob?.trim() || kv.path?.trim();\n      if (!pattern) {\n        throw new PmCliError(\"--add-glob key/value form requires pattern=<glob>\", EXIT_CODE.USAGE);\n      }\n      return {\n        pattern,\n        scope: ensureScope(kv.scope),\n        note: kv.note?.trim() || undefined,\n      };\n    }\n    return {\n      pattern: trimmed,\n      scope: \"project\",\n    };\n  });\n}\n\nfunction parseRemoveEntries(raw: string[] | undefined): string[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const trimmed = entry.trim();\n    if (!trimmed) {\n      throw new PmCliError(\"--remove requires a path value\", EXIT_CODE.USAGE);\n    }\n    if (trimmed.includes(\"=\") || /^(?:[-*+]\\s+)?path\\s*[:=]/i.test(trimmed) || trimmed.startsWith(\"```\")) {\n      const kv = parseCsvKv(trimmed, \"--remove\");\n      if (!kv.path) {\n        throw new PmCliError(\"--remove key/value form requires path=<value>\", EXIT_CODE.USAGE);\n      }\n      return kv.path;\n    }\n    return trimmed;\n  });\n}\n\nfunction parseMigrateEntries(raw: string[] | undefined): PathMigration[] {\n  if (!raw) return [];\n  return raw.map((entry) => {\n    const kv = parseCsvKv(entry, \"--migrate\");\n    const from = kv.from?.trim();\n    const to = kv.to?.trim();\n    if (!from || !to) {\n      throw new PmCliError(\"--migrate requires from=<value> and to=<value>\", EXIT_CODE.USAGE);\n    }\n    return { from, to };\n  });\n}\n\nfunction applyPathMigrations(filePath: string, migrations: PathMigration[]): string {\n  let next = filePath;\n  for (const migration of migrations) {\n    if (next.startsWith(migration.from)) {\n      next = `${migration.to}${next.slice(migration.from.length)}`;\n    }\n  }\n  return next;\n}\n\nfunction normalizeLinkedPath(value: string): string {\n  return value.split(path.sep).join(\"/\");\n}\n\nfunction normalizeCandidatePathForOutput(value: string): string {\n  return normalizeLinkedPath(path.normalize(value));\n}\n\nfunction isPathInside(parentPath: string, childPath: string): boolean {\n  const relative = path.relative(parentPath, childPath);\n  return relative === \"\" || (!relative.startsWith(\"..\") && !path.isAbsolute(relative));\n}\n\nasync function realpathForContainment(inputPath: string): Promise<string> {\n  try {\n    return await fs.realpath(inputPath);\n  } catch {\n    return path.resolve(inputPath);\n  }\n}\n\nfunction linkedFileResolvedKey(linkedFile: Pick<LinkedFile, \"path\" | \"scope\">, projectRoot: string): string {\n  const resolvedPath = path.isAbsolute(linkedFile.path)\n    ? path.resolve(linkedFile.path)\n    : path.resolve(projectRoot, linkedFile.path);\n  return `${normalizeCandidatePathForOutput(resolvedPath)}::${linkedFile.scope}`;\n}\n\nasync function expandAddGlobEntries(entries: AddGlobEntry[]): Promise<LinkedFile[]> {\n  const expanded: LinkedFile[] = [];\n  for (const entry of entries) {\n    const absolutePattern = path.isAbsolute(entry.pattern);\n    const matches = await fg(entry.pattern, {\n      cwd: process.cwd(),\n      absolute: absolutePattern,\n      onlyFiles: true,\n      dot: true,\n      unique: true,\n      followSymbolicLinks: true,\n    });\n    const sortedMatches = [...new Set(matches.map((match) => normalizeLinkedPath(path.normalize(match))))].sort((left, right) =>\n      left.localeCompare(right),\n    );\n    for (const matchedPath of sortedMatches) {\n      expanded.push({\n        path: matchedPath,\n        scope: entry.scope,\n        note: entry.note,\n      });\n    }\n  }\n  return expanded;\n}\n\nfunction fileKey(value: Pick<LinkedFile, \"path\" | \"scope\">): string {\n  return `${value.path}::${value.scope}`;\n}\n\nfunction sortLinkedFiles(files: LinkedFile[]): LinkedFile[] {\n  return [...files].sort((left, right) => {\n    const byPath = left.path.localeCompare(right.path);\n    if (byPath !== 0) return byPath;\n    return left.scope.localeCompare(right.scope);\n  });\n}\n\nfunction dedupeLinkedFiles(files: LinkedFile[]): LinkedFile[] {\n  return [...new Map(files.map((entry) => [fileKey(entry), entry])).values()].map((entry) => ({\n    ...entry,\n    note: entry.note?.trim() || undefined,\n  }));\n}\n\nasync function validateLinkedFilePaths(paths: string[]): Promise<LinkedPathValidation> {\n  const uniquePaths = [...new Set(paths)].sort((left, right) => left.localeCompare(right));\n  const existingFiles: string[] = [];\n  const missingPaths: string[] = [];\n  const nonFilePaths: string[] = [];\n  for (const relativePath of uniquePaths) {\n    const resolvedPath = path.isAbsolute(relativePath) ? relativePath : path.resolve(process.cwd(), relativePath);\n    try {\n      const stats = await fs.stat(resolvedPath);\n      if (stats.isFile()) {\n        existingFiles.push(relativePath);\n      } else {\n        nonFilePaths.push(relativePath);\n      }\n    } catch (error: unknown) {\n      if (typeof error === \"object\" && error !== null && \"code\" in error && (error as { code?: string }).code === \"ENOENT\") {\n        missingPaths.push(relativePath);\n        continue;\n      }\n      nonFilePaths.push(relativePath);\n    }\n  }\n  return {\n    checked: uniquePaths.length,\n    existing_files: existingFiles,\n    missing_paths: missingPaths,\n    non_file_paths: nonFilePaths,\n  };\n}\n\nfunction buildLinkedFileAudit(paths: string[], allItems: Array<{ id: string; files?: LinkedFile[] }>): LinkedPathAuditEntry[] {\n  const index = new Map<string, Set<string>>();\n  for (const item of allItems) {\n    for (const linkedFile of item.files ?? []) {\n      const seen = index.get(linkedFile.path) ?? new Set<string>();\n      seen.add(item.id);\n      index.set(linkedFile.path, seen);\n    }\n  }\n  return [...new Set(paths)]\n    .sort((left, right) => left.localeCompare(right))\n    .map((linkedPath) => {\n      const linkedIds = [...(index.get(linkedPath) ?? new Set<string>())].sort((left, right) => left.localeCompare(right));\n      return {\n        path: linkedPath,\n        linked_by_count: linkedIds.length,\n        linked_item_ids: linkedIds,\n      };\n    });\n}\n\nfunction collectTextReferences(value: unknown, fieldPath: string, references: TextReference[]): void {\n  if (typeof value === \"string\") {\n    const trimmed = value.trim();\n    if (trimmed.length > 0) {\n      references.push({ field: fieldPath, value: trimmed });\n    }\n    return;\n  }\n  if (Array.isArray(value)) {\n    value.forEach((entry, index) => collectTextReferences(entry, `${fieldPath}[${index}]`, references));\n    return;\n  }\n  if (typeof value === \"object\" && value !== null) {\n    for (const [key, nested] of Object.entries(value)) {\n      collectTextReferences(nested, fieldPath ? `${fieldPath}.${key}` : key, references);\n    }\n  }\n}\n\nfunction collectItemTextReferences(document: ItemDocument): TextReference[] {\n  const references: TextReference[] = [];\n  collectTextReferences(document.metadata, \"metadata\", references);\n  collectTextReferences(document.body, \"body\", references);\n  return references;\n}\n\nfunction cleanupPathToken(value: string): string {\n  let next = value.trim();\n  next = next.replace(/^[`\"'<([{]+/u, \"\");\n  next = next.replace(/[`\"'>)\\]},;!?]+$/u, \"\");\n  next = next.replace(/[.]+$/u, \"\");\n  next = next.replace(/:(?:\\d+)(?::\\d+)?$/u, \"\");\n  next = next.replace(/[.]+$/u, \"\");\n  return next;\n}\n\nfunction extractRawPathReferences(references: TextReference[]): RawPathReference[] {\n  const rawReferences: RawPathReference[] = [];\n  const absolutePattern = /(?:[A-Za-z]:[\\\\/]|\\/)[^\\s\"'`<>()\\[\\]{},;]+/gu;\n  const relativePattern =\n    /(?:\\.{1,2}[\\\\/])?(?:(?:[A-Za-z0-9_.@-]+[\\\\/])+[A-Za-z0-9_.@-]+|[A-Za-z0-9_.@-]+\\.[A-Za-z0-9][A-Za-z0-9._-]*)/gu;\n  for (const reference of references) {\n    const seenInField = new Set<string>();\n    for (const pattern of [absolutePattern, relativePattern]) {\n      pattern.lastIndex = 0;\n      for (const match of reference.value.matchAll(pattern)) {\n        const token = cleanupPathToken(match[0] ?? \"\");\n        if (!token || seenInField.has(token)) {\n          continue;\n        }\n        seenInField.add(token);\n        rawReferences.push({ field: reference.field, value: token });\n      }\n    }\n  }\n  return rawReferences;\n}\n\nasync function resolveDiscoveredFile(\n  rawPath: string,\n  projectRoot: string,\n): Promise<Pick<LinkedFile, \"path\" | \"scope\"> | undefined> {\n  const absolutePath = path.isAbsolute(rawPath) ? path.resolve(rawPath) : path.resolve(projectRoot, rawPath);\n  let stats;\n  try {\n    stats = await fs.stat(absolutePath);\n  } catch {\n    return undefined;\n  }\n  if (!stats.isFile()) {\n    return undefined;\n  }\n  const [canonicalProjectRoot, canonicalAbsolutePath] = await Promise.all([\n    realpathForContainment(projectRoot),\n    realpathForContainment(absolutePath),\n  ]);\n  if (isPathInside(canonicalProjectRoot, canonicalAbsolutePath)) {\n    const relativePath = path.relative(canonicalProjectRoot, canonicalAbsolutePath);\n    if (!relativePath || relativePath.startsWith(\"..\") || path.isAbsolute(relativePath)) {\n      return undefined;\n    }\n    return {\n      path: normalizeCandidatePathForOutput(relativePath),\n      scope: \"project\",\n    };\n  }\n  return {\n    path: normalizeCandidatePathForOutput(absolutePath),\n    scope: \"global\",\n  };\n}\n\nasync function discoverReferencedFiles(document: ItemDocument, projectRoot: string): Promise<FilesDiscoveryCandidate[]> {\n  const existingResolvedKeys = new Set((document.metadata.files ?? []).map((entry) => linkedFileResolvedKey(entry, projectRoot)));\n  const grouped = new Map<\n    string,\n    {\n      path: string;\n      scope: LinkScope;\n      sourceFields: Set<string>;\n      originalPaths: Set<string>;\n      sourceCount: number;\n    }\n  >();\n  const rawReferences = extractRawPathReferences(collectItemTextReferences(document));\n  for (const reference of rawReferences) {\n    const resolved = await resolveDiscoveredFile(reference.value, projectRoot);\n    if (!resolved) {\n      continue;\n    }\n    const key = linkedFileResolvedKey(resolved, projectRoot);\n    const existing = grouped.get(key) ?? {\n      path: resolved.path,\n      scope: resolved.scope,\n      sourceFields: new Set<string>(),\n      originalPaths: new Set<string>(),\n      sourceCount: 0,\n    };\n    existing.sourceFields.add(reference.field);\n    existing.originalPaths.add(reference.value);\n    existing.sourceCount += 1;\n    grouped.set(key, existing);\n  }\n  return [...grouped.entries()]\n    .map(([key, entry]) => ({\n      path: entry.path,\n      scope: entry.scope,\n      status: existingResolvedKeys.has(key) ? (\"already_linked\" as const) : (\"addable\" as const),\n      source_count: entry.sourceCount,\n      source_fields: [...entry.sourceFields].sort((left, right) => left.localeCompare(right)),\n      original_paths: [...entry.originalPaths].sort((left, right) => left.localeCompare(right)),\n    }))\n    .sort((left, right) => {\n      const byStatus = left.status.localeCompare(right.status);\n      if (byStatus !== 0) return byStatus;\n      const byPath = left.path.localeCompare(right.path);\n      if (byPath !== 0) return byPath;\n      return left.scope.localeCompare(right.scope);\n    });\n}\n\nexport async function runFiles(id: string, options: FilesCommandOptions, global: GlobalOptions): Promise<FilesResult> {\n  const stdinResolver = createStdinTokenResolver();\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const resolvedAdds = await stdinResolver.resolveList(options.add, \"--add\");\n  const resolvedAddGlobs = await stdinResolver.resolveList(options.addGlob, \"--add-glob\");\n  const resolvedRemoves = await stdinResolver.resolveList(options.remove, \"--remove\");\n  const resolvedMigrations = await stdinResolver.resolveList(options.migrate, \"--migrate\");\n  const parsedAdds = parseAddEntries(resolvedAdds);\n  const addGlobs = parseAddGlobEntries(resolvedAddGlobs);\n  const expandedGlobAdds = await expandAddGlobEntries(addGlobs);\n  const adds = [...parsedAdds, ...expandedGlobAdds];\n  const removes = parseRemoveEntries(resolvedRemoves);\n  const migrations = parseMigrateEntries(resolvedMigrations);\n  const shouldMutate = adds.length > 0 || removes.length > 0 || migrations.length > 0;\n\n  if (!shouldMutate) {\n    const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n    if (!located) {\n      throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n    }\n    const loaded = await readLocatedItem(located, { schema: settings.schema });\n    const files = loaded.document.metadata.files ?? [];\n    return {\n      id: located.id,\n      files,\n      changed: false,\n      count: files.length,\n      validation: options.validatePaths ? await validateLinkedFilePaths(files.map((entry) => entry.path)) : undefined,\n      audit: options.audit\n        ? buildLinkedFileAudit(\n            files.map((entry) => entry.path),\n            (await listAllFrontMatter(pmRoot, settings.item_format, typeRegistry.type_to_folder, undefined, settings.schema)).map((entry) => ({\n              id: entry.id,\n              files: entry.files,\n            })),\n          )\n        : undefined,\n    };\n  }\n\n  const author = resolveAuthor(options.author, settings.author_default);\n  const result = await mutateItem({\n    pmRoot,\n    settings,\n    id,\n    op: \"files_add\",\n    author,\n    message: options.message,\n    force: options.force,\n    mutate(document) {\n      const next = [...(document.metadata.files ?? [])];\n      let migrationCount = 0;\n      if (migrations.length > 0) {\n        for (let index = 0; index < next.length; index += 1) {\n          const migratedPath = applyPathMigrations(next[index].path, migrations);\n          if (migratedPath !== next[index].path) {\n            next[index] = { ...next[index], path: migratedPath };\n            migrationCount += 1;\n          }\n        }\n      }\n      const migratedAdds = adds.map((entry) => {\n        const migratedPath = applyPathMigrations(entry.path, migrations);\n        if (migratedPath !== entry.path) {\n          migrationCount += 1;\n        }\n        return {\n          ...entry,\n          path: migratedPath,\n        };\n      });\n      const migratedRemoves = removes.map((entry) => applyPathMigrations(entry, migrations));\n      for (const add of migratedAdds) {\n        const exists = next.some((entry) => entry.path === add.path && entry.scope === add.scope);\n        if (!exists) {\n          next.push(add);\n        }\n      }\n      if (migratedRemoves.length > 0) {\n        for (let i = next.length - 1; i >= 0; i -= 1) {\n          if (migratedRemoves.includes(next[i].path)) {\n            next.splice(i, 1);\n          }\n        }\n      }\n      const deduped = dedupeLinkedFiles(next);\n      const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);\n      if (normalized.length > 0) {\n        document.metadata.files = normalized;\n      } else {\n        delete document.metadata.files;\n      }\n      return { changedFields: [\"files\"], warnings: migrationCount > 0 ? [`path_migrations_applied:${migrationCount}`] : [] };\n    },\n  });\n\n  const files = result.item.files ?? [];\n  const migrationWarning = result.warnings.find((warning) => warning.startsWith(\"path_migrations_applied:\"));\n  const migrationCount = migrationWarning ? Number(migrationWarning.split(\":\")[1] ?? \"0\") : 0;\n  const allItems = options.audit\n    ? (await listAllFrontMatter(pmRoot, settings.item_format, typeRegistry.type_to_folder, undefined, settings.schema)).map((entry) => ({\n        id: entry.id,\n        files: entry.files,\n      }))\n    : [];\n  return {\n    id: result.item.id,\n    files,\n    changed: true,\n    count: files.length,\n    migrations_applied: migrationCount > 0 ? migrationCount : undefined,\n    validation: options.validatePaths ? await validateLinkedFilePaths(files.map((entry) => entry.path)) : undefined,\n    audit: options.audit ? buildLinkedFileAudit(files.map((entry) => entry.path), allItems) : undefined,\n  };\n}\n\nexport async function runFilesDiscover(\n  id: string,\n  options: FilesDiscoverOptions,\n  global: GlobalOptions,\n): Promise<FilesDiscoverResult> {\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n  if (!located) {\n    throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n  const loaded = await readLocatedItem(located, { schema: settings.schema });\n  const candidates = await discoverReferencedFiles(loaded.document, process.cwd());\n  const addableCandidates = candidates.filter((candidate) => candidate.status === \"addable\");\n  const skippedExisting = candidates.filter((candidate) => candidate.status === \"already_linked\");\n  const requestedApply = options.apply === true;\n  const note = options.note?.trim() || \"discovered from item text\";\n\n  if (!requestedApply || addableCandidates.length === 0) {\n    const files = loaded.document.metadata.files ?? [];\n    return {\n      id: located.id,\n      files,\n      changed: false,\n      apply: requestedApply,\n      count: files.length,\n      candidate_count: candidates.length,\n      addable_count: addableCandidates.length,\n      added_count: 0,\n      skipped_existing_count: skippedExisting.length,\n      candidates,\n      added: [],\n      skipped_existing: skippedExisting,\n    };\n  }\n\n  const author = resolveAuthor(options.author, settings.author_default);\n  const discoveredAdds: LinkedFile[] = addableCandidates.map((candidate) => ({\n    path: candidate.path,\n    scope: candidate.scope,\n    note,\n  }));\n  const result = await mutateItem({\n    pmRoot,\n    settings,\n    id,\n    op: \"files_discover\",\n    author,\n    message: options.message ?? \"Discover referenced file links\",\n    force: options.force,\n    mutate(document) {\n      const next = [...(document.metadata.files ?? [])];\n      const existingResolvedKeys = new Set(next.map((entry) => linkedFileResolvedKey(entry, process.cwd())));\n      const appliedAdds: LinkedFile[] = [];\n      for (const add of discoveredAdds) {\n        const resolvedKey = linkedFileResolvedKey(add, process.cwd());\n        if (existingResolvedKeys.has(resolvedKey)) {\n          continue;\n        }\n        next.push(add);\n        existingResolvedKeys.add(resolvedKey);\n        appliedAdds.push(add);\n      }\n      const deduped = dedupeLinkedFiles(next);\n      const normalized = options.appendStable ? deduped : sortLinkedFiles(deduped);\n      if (normalized.length > 0) {\n        document.metadata.files = normalized;\n      } else {\n        delete document.metadata.files;\n      }\n      return {\n        changedFields: appliedAdds.length > 0 ? [\"files\"] : [],\n        warnings: appliedAdds.length !== discoveredAdds.length ? [`files_discover_skipped_existing:${discoveredAdds.length - appliedAdds.length}`] : [],\n      };\n    },\n  });\n\n  const files = result.item.files ?? [];\n  const addedResolvedKeys = new Set(discoveredAdds.map((entry) => linkedFileResolvedKey(entry, process.cwd())));\n  const added = files.filter((entry) => addedResolvedKeys.has(linkedFileResolvedKey(entry, process.cwd())));\n  return {\n    id: result.item.id,\n    files,\n    changed: added.length > 0,\n    apply: true,\n    count: files.length,\n    candidate_count: candidates.length,\n    addable_count: addableCandidates.length,\n    added_count: added.length,\n    skipped_existing_count: skippedExisting.length,\n    candidates,\n    added,\n    skipped_existing: skippedExisting,\n  };\n}\n"]}

package/dist/cli/commands/get.js

@@ -47,14 +47,14 @@ export async function runGet(id, global) {
         history = [];
     }
     return {
-        item: loaded.document.front_matter,
+        item: loaded.document.metadata,
         body: loaded.document.body,
         linked: {
-            files: loaded.document.front_matter.files ?? [],
-            tests: loaded.document.front_matter.tests ?? [],
-            docs: loaded.document.front_matter.docs ?? [],
+            files: loaded.document.metadata.files ?? [],
+            tests: loaded.document.metadata.tests ?? [],
+            docs: loaded.document.metadata.docs ?? [],
         },
-        claim_state: resolveClaimStateContext(loaded.document.front_matter.assignee, history),
+        claim_state: resolveClaimStateContext(loaded.document.metadata.assignee, history),
     };
 }
 //# sourceMappingURL=get.js.map

package/dist/cli/commands/get.js.map

@@ -1 +1 @@
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null,\n  };\n}\n\nfunction resolveClaimStateContext(\n  assigneeValue: string | undefined,\n  history: ClaimHistoryEntry[],\n): ClaimStateContext {\n  const assignee = assigneeValue?.trim();\n  const normalizedAssignee = assignee && assignee.length > 0 ? assignee : null;\n  const lastClaim = [...history].reverse().find((entry) => entry.op === \"claim\");\n  const lastRelease = [...history].reverse().find((entry) => entry.op === \"release\");\n  return {\n    claimed: normalizedAssignee !== null,\n    assignee: normalizedAssignee,\n    last_claim: lastClaim ? toClaimHistoryContext(lastClaim) : null,\n    last_release: lastRelease ? toClaimHistoryContext(lastRelease) : null,\n  };\n}\n\nexport async function runGet(id: string, global: GlobalOptions): Promise<GetResult> {\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n  if (!located) {\n    throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n  const loaded = await readLocatedItem(located, { schema: settings.schema });\n  const historyPath = getHistoryPath(pmRoot, located.id);\n  let history: ClaimHistoryEntry[] = [];\n  try {\n    history = await readHistoryEntries(historyPath, located.id);\n  } catch {\n    history = [];\n  }\n  return {\n    item: loaded.document.front_matter,\n    body: loaded.document.body,\n    linked: {\n      files: loaded.document.front_matter.files ?? [],\n      tests: loaded.document.front_matter.tests ?? [],\n      docs: loaded.document.front_matter.docs ?? [],\n    },\n    claim_state: resolveClaimStateContext(loaded.document.front_matter.assignee, history),\n  };\n}\n"]}
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null,\n  };\n}\n\nfunction resolveClaimStateContext(\n  assigneeValue: string | undefined,\n  history: ClaimHistoryEntry[],\n): ClaimStateContext {\n  const assignee = assigneeValue?.trim();\n  const normalizedAssignee = assignee && assignee.length > 0 ? assignee : null;\n  const lastClaim = [...history].reverse().find((entry) => entry.op === \"claim\");\n  const lastRelease = [...history].reverse().find((entry) => entry.op === \"release\");\n  return {\n    claimed: normalizedAssignee !== null,\n    assignee: normalizedAssignee,\n    last_claim: lastClaim ? toClaimHistoryContext(lastClaim) : null,\n    last_release: lastRelease ? toClaimHistoryContext(lastRelease) : null,\n  };\n}\n\nexport async function runGet(id: string, global: GlobalOptions): Promise<GetResult> {\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n  const settings = await readSettings(pmRoot);\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const located = await locateItem(pmRoot, id, settings.id_prefix, settings.item_format, typeRegistry.type_to_folder);\n  if (!located) {\n    throw new PmCliError(`Item ${id} not found`, EXIT_CODE.NOT_FOUND);\n  }\n  const loaded = await readLocatedItem(located, { schema: settings.schema });\n  const historyPath = getHistoryPath(pmRoot, located.id);\n  let history: ClaimHistoryEntry[] = [];\n  try {\n    history = await readHistoryEntries(historyPath, located.id);\n  } catch {\n    history = [];\n  }\n  return {\n    item: loaded.document.metadata,\n    body: loaded.document.body,\n    linked: {\n      files: loaded.document.metadata.files ?? [],\n      tests: loaded.document.metadata.tests ?? [],\n      docs: loaded.document.metadata.docs ?? [],\n    },\n    claim_state: resolveClaimStateContext(loaded.document.metadata.assignee, history),\n  };\n}\n"]}

package/dist/cli/commands/guide.d.ts

@@ -0,0 +1,55 @@
+import type { GlobalOptions } from "../../core/shared/command-types.js";
+import { type GuideTopicDefinition } from "../guide-topics.js";
+export declare const GUIDE_OUTPUT_VALUES: readonly ["markdown", "toon", "json"];
+export type GuideOutputFormat = (typeof GUIDE_OUTPUT_VALUES)[number];
+export declare const GUIDE_DEPTH_VALUES: readonly ["brief", "standard", "deep"];
+export type GuideDepth = (typeof GUIDE_DEPTH_VALUES)[number];
+export interface GuideOptions {
+    topic?: string;
+    list?: boolean;
+    format?: string;
+    depth?: string;
+    [key: string]: unknown;
+}
+export interface GuideDocRender {
+    path: string;
+    purpose: string;
+    optional: boolean;
+    exists: boolean;
+    line_count: number | null;
+    content_mode: "none" | "excerpt" | "full";
+    content: string | null;
+    truncated: boolean;
+}
+export interface GuideIndexResult {
+    output_default: "toon";
+    mode: "index";
+    depth: GuideDepth;
+    topics: Array<{
+        id: string;
+        aliases: string[];
+        title: string;
+        summary: string;
+        intent: string;
+        quick_commands: string[];
+        docs: Array<{
+            path: string;
+            purpose: string;
+        }>;
+        related: string[];
+    }>;
+    suggested_next_steps: string[];
+}
+export interface GuideTopicResult {
+    output_default: "toon";
+    mode: "topic";
+    depth: GuideDepth;
+    requested_topic: string;
+    topic: GuideTopicDefinition;
+    docs: GuideDocRender[];
+    warnings: string[];
+}
+export type GuideResult = GuideIndexResult | GuideTopicResult;
+export declare function resolveGuideOutputFormat(options: GuideOptions, global: GlobalOptions): GuideOutputFormat;
+export declare function runGuide(options: GuideOptions, global: GlobalOptions): Promise<GuideResult>;
+export declare function renderGuideMarkdown(result: GuideResult): string;