@triedotdev/mcp 1.0.155 → 1.0.156

package/dist/chunk-EMJ7RVWB.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/cli/checkpoint.ts","../src/utils/trie-init.ts","../src/context/sync.ts","../src/utils/errors.ts","../src/agent/confidence.ts","../src/agent/learning.ts","../src/agent/learning-engine.ts","../src/agent/perceive.ts","../src/agent/diff-analyzer.ts","../src/agent/risk-scorer.ts","../src/agent/pattern-matcher.ts","../src/orchestrator/triager.ts","../src/utils/parallel-executor.ts","../src/utils/cache-manager.ts","../src/orchestrator/executor.ts","../src/agent/reason.ts"],"sourcesContent":["/**\n * Checkpoint CLI\n * \n * Save your work context to .trie/ without running a full scan.\n * Think of it as a quick save - captures what you're working on.\n */\n\nimport { existsSync } from 'fs';\nimport { mkdir, writeFile, readFile } from 'fs/promises';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from '../utils/workspace.js';\n\nexport interface Checkpoint {\n  id: string;\n  timestamp: string;\n  message?: string;\n  files: string[];\n  notes?: string;\n  createdBy: 'cli' | 'mcp';\n}\n\nexport interface CheckpointLog {\n  checkpoints: Checkpoint[];\n  lastCheckpoint?: string;\n}\n\n/**\n * Save a checkpoint\n */\nexport async function saveCheckpoint(options: {\n  message?: string;\n  files?: string[];\n  notes?: string;\n  workDir?: string;\n  createdBy?: 'cli' | 'mcp';\n}): Promise<Checkpoint> {\n  const workDir = options.workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(workDir);\n  const checkpointPath = join(trieDir, 'checkpoints.json');\n  \n  await mkdir(trieDir, { recursive: true });\n  \n  // Load existing checkpoints\n  let log: CheckpointLog = { checkpoints: [] };\n  try {\n    if (existsSync(checkpointPath)) {\n      log = JSON.parse(await readFile(checkpointPath, 'utf-8'));\n    }\n  } catch {\n    log = { checkpoints: [] };\n  }\n  \n  // Create new checkpoint\n  const checkpoint: Checkpoint = {\n    id: `cp-${Date.now().toString(36)}`,\n    timestamp: new Date().toISOString(),\n    files: options.files || [],\n    createdBy: options.createdBy || 'cli',\n  };\n  if (options.message) checkpoint.message = options.message;\n  if (options.notes) checkpoint.notes = options.notes;\n  \n  // Add to log\n  log.checkpoints.push(checkpoint);\n  log.lastCheckpoint = checkpoint.id;\n  \n  // Keep last 50 checkpoints\n  if (log.checkpoints.length > 50) {\n    log.checkpoints = log.checkpoints.slice(-50);\n  }\n  \n  // Save\n  await writeFile(checkpointPath, JSON.stringify(log, null, 2));\n  \n  // Also update AGENTS.md with checkpoint note\n  await updateAgentsMdWithCheckpoint(checkpoint, workDir);\n  \n  return checkpoint;\n}\n\n/**\n * List checkpoints\n */\nexport async function listCheckpoints(workDir?: string): Promise<Checkpoint[]> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const checkpointPath = join(getTrieDirectory(dir), 'checkpoints.json');\n  \n  try {\n    if (existsSync(checkpointPath)) {\n      const log: CheckpointLog = JSON.parse(await readFile(checkpointPath, 'utf-8'));\n      return log.checkpoints;\n    }\n  } catch {\n    // File doesn't exist or is corrupted\n  }\n  \n  return [];\n}\n\n/**\n * Get the last checkpoint\n */\nexport async function getLastCheckpoint(workDir?: string): Promise<Checkpoint | null> {\n  const checkpoints = await listCheckpoints(workDir);\n  const last = checkpoints[checkpoints.length - 1];\n  return last ?? null;\n}\n\n/**\n * Update AGENTS.md with checkpoint info\n */\nasync function updateAgentsMdWithCheckpoint(checkpoint: Checkpoint, workDir: string): Promise<void> {\n  const agentsPath = join(getTrieDirectory(workDir), 'AGENTS.md');\n  \n  let content = '';\n  try {\n    if (existsSync(agentsPath)) {\n      content = await readFile(agentsPath, 'utf-8');\n    }\n  } catch {\n    content = '';\n  }\n  \n  // Find or create checkpoint section\n  const checkpointSection = `\n## Last Checkpoint\n\n- **ID:** ${checkpoint.id}\n- **Time:** ${checkpoint.timestamp}\n${checkpoint.message ? `- **Message:** ${checkpoint.message}` : ''}\n${checkpoint.files.length > 0 ? `- **Files:** ${checkpoint.files.length} files` : ''}\n${checkpoint.notes ? `- **Notes:** ${checkpoint.notes}` : ''}\n`;\n  \n  // Replace existing checkpoint section or append\n  const checkpointRegex = /## Last Checkpoint[\\s\\S]*?(?=\\n## |\\n---|\\Z)/;\n  if (checkpointRegex.test(content)) {\n    content = content.replace(checkpointRegex, checkpointSection.trim());\n  } else {\n    content = content.trim() + '\\n\\n' + checkpointSection.trim() + '\\n';\n  }\n  \n  await writeFile(agentsPath, content);\n}\n\n/**\n * CLI handler for checkpoint command\n */\nexport async function handleCheckpointCommand(args: string[]): Promise<void> {\n  const subcommand = args[0] || 'save';\n  \n  switch (subcommand) {\n    case 'save': {\n      // Parse options\n      let message: string | undefined;\n      let notes: string | undefined;\n      const files: string[] = [];\n      \n      for (let i = 1; i < args.length; i++) {\n        const arg = args[i];\n        if (arg === '-m' || arg === '--message') {\n          message = args[++i] ?? '';\n        } else if (arg === '-n' || arg === '--notes') {\n          notes = args[++i] ?? '';\n        } else if (arg === '-f' || arg === '--file') {\n          const file = args[++i];\n          if (file) files.push(file);\n        } else if (arg && !arg.startsWith('-')) {\n          // Treat as message if no flag\n          message = arg;\n        }\n      }\n      \n      const opts: { message?: string; files?: string[]; notes?: string } = { files };\n      if (message) opts.message = message;\n      if (notes) opts.notes = notes;\n      const checkpoint = await saveCheckpoint(opts);\n      \n      console.log('\\n  Checkpoint saved\\n');\n      console.log(`  ID: ${checkpoint.id}`);\n      console.log(`  Time: ${checkpoint.timestamp}`);\n      if (checkpoint.message) {\n        console.log(`  Message: ${checkpoint.message}`);\n      }\n      if (checkpoint.files.length > 0) {\n        console.log(`  Files: ${checkpoint.files.join(', ')}`);\n      }\n      console.log('\\n  Context saved to .trie/\\n');\n      break;\n    }\n    \n    case 'list': {\n      const checkpoints = await listCheckpoints();\n      \n      if (checkpoints.length === 0) {\n        console.log('\\n  No checkpoints yet. Run `trie checkpoint` to save one.\\n');\n        return;\n      }\n      \n      console.log('\\n  Checkpoints:\\n');\n      for (const cp of checkpoints.slice(-10).reverse()) {\n        const date = new Date(cp.timestamp).toLocaleString();\n        console.log(`  ${cp.id}  ${date}  ${cp.message || '(no message)'}`);\n      }\n      console.log('');\n      break;\n    }\n    \n    case 'last': {\n      const checkpoint = await getLastCheckpoint();\n      \n      if (!checkpoint) {\n        console.log('\\n  No checkpoints yet. Run `trie checkpoint` to save one.\\n');\n        return;\n      }\n      \n      console.log('\\n  Last Checkpoint:\\n');\n      console.log(`  ID: ${checkpoint.id}`);\n      console.log(`  Time: ${new Date(checkpoint.timestamp).toLocaleString()}`);\n      if (checkpoint.message) {\n        console.log(`  Message: ${checkpoint.message}`);\n      }\n      if (checkpoint.notes) {\n        console.log(`  Notes: ${checkpoint.notes}`);\n      }\n      if (checkpoint.files.length > 0) {\n        console.log(`  Files: ${checkpoint.files.join(', ')}`);\n      }\n      console.log('');\n      break;\n    }\n    \n    default:\n      console.log(`\n  Usage: trie checkpoint [command] [options]\n\n  Commands:\n    save [message]     Save a checkpoint (default)\n    list               List recent checkpoints\n    last               Show the last checkpoint\n\n  Options:\n    -m, --message      Checkpoint message\n    -n, --notes        Additional notes\n    -f, --file         File to include (can be repeated)\n\n  Examples:\n    trie checkpoint \"finished auth flow\"\n    trie checkpoint save -m \"WIP: payment integration\" -n \"needs testing\"\n    trie checkpoint list\n`);\n  }\n}\n","import { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from './workspace.js';\n\nconst INIT_MARKERS = [\n  'PROJECT.md',\n  'RULES.md',\n  'TEAM.md',\n  'BOOTSTRAP.md',\n  'AGENTS.md',\n  'config.json',\n];\n\nexport function isTrieInitialized(workDir?: string): boolean {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(dir);\n  return INIT_MARKERS.some((marker) => existsSync(join(trieDir, marker)));\n}\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { getTrieDirectory } from '../utils/workspace.js';\n\nimport { ContextGraph } from './graph.js';\nimport type { ContextSnapshot } from './types.js';\n\nconst DEFAULT_JSON_NAME = 'context.json';\n\nexport async function exportToJson(graph: ContextGraph, targetPath?: string): Promise<string> {\n  const snapshot = await graph.getSnapshot();\n  const json = JSON.stringify(snapshot, null, 2);\n\n  const outputPath = targetPath ?? path.join(getTrieDirectory(graph.projectRoot), DEFAULT_JSON_NAME);\n  await fs.mkdir(path.dirname(outputPath), { recursive: true });\n  await fs.writeFile(outputPath, json, 'utf8');\n\n  return json;\n}\n\nexport async function importFromJson(\n  graph: ContextGraph,\n  json: string,\n  sourcePath?: string\n): Promise<void> {\n  const payload =\n    json.trim().length > 0\n      ? json\n      : await fs.readFile(sourcePath ?? path.join(getTrieDirectory(graph.projectRoot), DEFAULT_JSON_NAME), 'utf8');\n\n  const snapshot = JSON.parse(payload) as ContextSnapshot;\n  await graph.applySnapshot(snapshot);\n}\n","export class TrieError extends Error {\n  code: string;\n  recoverable: boolean;\n  userMessage: string;\n\n  constructor(message: string, code: string, userMessage: string, recoverable = true) {\n    super(message);\n    this.code = code;\n    this.recoverable = recoverable;\n    this.userMessage = userMessage;\n  }\n}\n\nexport class GraphError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'GRAPH_ERROR',\n      'Trie had trouble accessing its memory. Try again or re-run trie reconcile.',\n      true\n    );\n  }\n}\n\nexport class GitError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'GIT_ERROR',\n      'Git info is unavailable. Is this a git repo? Commit once, or pass --files to trie check.',\n      true\n    );\n  }\n}\n\nexport class NetworkError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'NETWORK_ERROR',\n      'Network unavailable. Running in offline mode; AI calls skipped.',\n      true\n    );\n  }\n}\n\nexport class MissingAPIKeyError extends TrieError {\n  constructor(message = 'Missing ANTHROPIC_API_KEY') {\n    super(\n      message,\n      'MISSING_API_KEY',\n      'No API key detected. Set ANTHROPIC_API_KEY for AI-powered analysis (deeper issue detection, smarter fixes). Running in pattern-only mode.',\n      true\n    );\n  }\n}\n\nexport function formatFriendlyError(error: unknown): { userMessage: string; code: string } {\n  if (error instanceof TrieError) {\n    return { userMessage: error.userMessage, code: error.code };\n  }\n  return {\n    userMessage: 'Something went wrong. Try again or run with --offline.',\n    code: 'UNKNOWN'\n  };\n}\n","/**\n * Lightweight Bayesian-style confidence updater.\n * Treats confidence as probability in [0,1].\n */\n\nexport function bayesianUpdate(prior: number, evidence: number, weight = 1): number {\n  const p = clamp(prior);\n  const e = clamp(evidence);\n  const w = Math.max(0, weight);\n  // Blend prior with evidence weighted by w\n  const posterior = (p * (1 - w)) + (e * w);\n  return clamp(posterior);\n}\n\nexport function adjustConfidence(current: number, outcome: 'positive' | 'negative', step = 0.1): number {\n  const delta = outcome === 'positive' ? step : -step;\n  return clamp(current + delta);\n}\n\nfunction clamp(value: number): number {\n  if (Number.isNaN(value)) return 0.5;\n  return Math.min(1, Math.max(0, value));\n}\n","import { ContextGraph } from '../context/graph.js';\nimport type { IncidentNode, PatternNode } from '../context/nodes.js';\nimport { IncidentIndex } from '../context/incident-index.js';\nimport { adjustConfidence } from './confidence.js';\nimport { TriePatternDiscovery } from './pattern-discovery.js';\n\nexport class LearningSystem {\n  private incidentIndex: IncidentIndex;\n  private discovery: TriePatternDiscovery;\n\n  constructor(private graph: ContextGraph, projectPath: string) {\n    this.incidentIndex = new IncidentIndex(graph, projectPath);\n    this.discovery = new TriePatternDiscovery(graph, this.incidentIndex);\n  }\n\n  async onWarningHeeded(files: string[]): Promise<void> {\n    await this.adjustPatterns(files, 'positive');\n  }\n\n  async onWarningIgnored(files: string[]): Promise<void> {\n    await this.adjustPatterns(files, 'negative');\n  }\n\n  async onIncidentReported(incidentId: string, files: string[]): Promise<void> {\n    const incident = await this.graph.getNode('incident', incidentId);\n    if (incident && incident.type === 'incident') {\n      this.incidentIndex.addIncidentToTrie(incident as IncidentNode, files);\n    }\n    await this.discoverAndStorePatterns();\n  }\n\n  async onFeedback(helpful: boolean, files: string[] = []): Promise<void> {\n    await this.adjustPatterns(files, helpful ? 'positive' : 'negative');\n  }\n\n  private async adjustPatterns(files: string[], outcome: 'positive' | 'negative'): Promise<void> {\n    if (!files.length) return;\n    for (const file of files) {\n      const patterns = await this.graph.getPatternsForFile(file);\n      await Promise.all(patterns.map((p) => this.updatePatternConfidence(p, outcome)));\n    }\n  }\n\n  private async updatePatternConfidence(pattern: PatternNode, outcome: 'positive' | 'negative'): Promise<void> {\n    const current = pattern.data.confidence ?? 0.5;\n    const updated = adjustConfidence(current, outcome, 0.05);\n    await this.graph.updateNode('pattern', pattern.id, { confidence: updated, lastSeen: new Date().toISOString() });\n  }\n\n  private async discoverAndStorePatterns(): Promise<void> {\n    const hotPatterns = this.discovery.discoverHotPatterns();\n    for (const hot of hotPatterns) {\n      await this.graph.addNode('pattern', {\n        description: `${hot.type === 'directory' ? 'Directory' : 'File'} hot zone: ${hot.path}`,\n        appliesTo: [hot.path],\n        confidence: hot.confidence,\n        occurrences: hot.incidentCount,\n        firstSeen: new Date().toISOString(),\n        lastSeen: new Date().toISOString(),\n        isAntiPattern: true,\n        source: 'local'\n      });\n    }\n  }\n}\n","import { getRecentCommits, getDiff } from '../agent/git.js';\nimport { storeIssues } from '../memory/issue-store.js';\nimport { scanForVulnerabilities } from '../trie/vulnerability-signatures.js';\nimport { scanForVibeCodeIssues } from '../trie/vibe-code-signatures.js';\nimport type { Issue } from '../types/index.js';\nimport { ContextGraph } from '../context/graph.js';\nimport type { DecisionNodeData } from '../context/nodes.js';\nimport { LearningSystem } from '../agent/learning.js';\nimport path from 'node:path';\n\nexport interface LearningResult {\n  learned: number;\n  source: 'git-history' | 'manual-feedback';\n}\n\nexport class LearningEngine {\n  private readonly projectPath: string;\n  private readonly graph: ContextGraph;\n  private readonly learningSystem: LearningSystem;\n\n  constructor(projectPath: string, graph?: ContextGraph) {\n    this.projectPath = projectPath;\n    this.graph = graph || new ContextGraph(projectPath);\n    this.learningSystem = new LearningSystem(this.graph, projectPath);\n  }\n\n  /**\n   * Unified learning method: Scans history AND processes manual feedback\n   */\n  async learn(options: { \n    limit?: number; \n    manualFeedback?: { helpful: boolean; files: string[]; note?: string } \n  } = {}): Promise<LearningResult[]> {\n    const results: LearningResult[] = [];\n\n    // 1. Implicit Learning from Git History\n    if (!options.manualFeedback) {\n      const implicitCount = await this.learnFromHistory(options.limit || 20);\n      results.push({ learned: implicitCount, source: 'git-history' });\n    }\n\n    // 2. Manual Feedback Learning\n    if (options.manualFeedback) {\n      await this.recordManualFeedback(\n        options.manualFeedback.helpful, \n        options.manualFeedback.files, \n        options.manualFeedback.note\n      );\n      results.push({ learned: options.manualFeedback.files.length || 1, source: 'manual-feedback' });\n    }\n\n    return results;\n  }\n\n  /**\n   * Scan recent commits for implicit failure signals (reverts, fixes)\n   */\n  private async learnFromHistory(limit: number = 20): Promise<number> {\n    const commits = await getRecentCommits(this.projectPath, limit);\n    const issuesToStore: Issue[] = [];\n\n    for (const commit of commits) {\n      const isRevert = commit.message.toLowerCase().includes('revert') || commit.message.startsWith('Revert \"');\n      const isFix = /fix(es|ed)?\\s+#\\d+/i.test(commit.message) || commit.message.toLowerCase().includes('bugfix');\n\n      if (isRevert || isFix) {\n        const type = isRevert ? 'revert' : 'fix';\n        const diff = await getDiff(this.projectPath, commit.hash);\n        const files = this.extractFilesFromDiff(diff);\n        \n        for (const file of files) {\n          const learnedIssues = await this.extractIssuesFromDiff(diff, file, type, commit.message);\n          issuesToStore.push(...learnedIssues);\n        }\n      }\n    }\n\n    if (issuesToStore.length > 0) {\n      const result = await storeIssues(issuesToStore, path.basename(this.projectPath), this.projectPath);\n      return result.stored;\n    }\n\n    return 0;\n  }\n\n  /**\n   * Record manual feedback (trie ok/bad) and adjust pattern confidence\n   */\n  private async recordManualFeedback(helpful: boolean, files: string[], note?: string): Promise<void> {\n    const context = files[0] ?? 'unspecified';\n    const decision = await this.graph.addNode('decision', {\n      context,\n      decision: helpful ? 'helpful' : 'not helpful',\n      reasoning: note ?? null,\n      outcome: helpful ? 'good' : 'bad',\n      timestamp: new Date().toISOString(),\n    } satisfies DecisionNodeData);\n\n    if (files.length > 0) {\n      for (const file of files) {\n        const fileNode = await this.graph.getNode('file', file);\n        if (fileNode) {\n          await this.graph.addEdge(decision.id, fileNode.id, 'affects');\n        }\n      }\n      await this.learningSystem.onFeedback(helpful, files);\n    }\n  }\n\n  private extractFilesFromDiff(diff: string): string[] {\n    const files = new Set<string>();\n    const lines = diff.split('\\n');\n    for (const line of lines) {\n      if (line.startsWith('+++ b/')) {\n        files.add(line.slice(6));\n      }\n    }\n    return Array.from(files);\n  }\n\n  private async extractIssuesFromDiff(diff: string, file: string, type: 'revert' | 'fix', message: string): Promise<Issue[]> {\n    const issues: Issue[] = [];\n    const badLines = this.getBadLinesFromDiff(diff, file, type);\n    const content = badLines.join('\\n');\n\n    if (!content) return [];\n\n    const vulnerabilities = await scanForVulnerabilities(content, file);\n    const vibeIssues = await scanForVibeCodeIssues(content, file);\n\n    const allMatches = [...vulnerabilities, ...vibeIssues];\n\n    for (const match of allMatches) {\n      issues.push({\n        id: `implicit-${type}-${Date.now()}-${Math.random().toString(36).slice(2, 7)}`,\n        severity: 'serious',\n        issue: `Implicit failure detected via ${type}: ${message}. Linked to pattern: ${match.category}`,\n        fix: `Review the ${type} commit and avoid this pattern in ${file}.`,\n        file: file,\n        confidence: 0.7,\n        autoFixable: false,\n        agent: 'implicit-learning',\n        category: match.category\n      });\n    }\n\n    if (issues.length === 0) {\n      issues.push({\n        id: `implicit-${type}-${Date.now()}`,\n        severity: 'moderate',\n        issue: `Historical ${type} detected: ${message}`,\n        fix: `Review the changes in ${file} from this commit to avoid regression.`,\n        file: file,\n        confidence: 0.5,\n        autoFixable: false,\n        agent: 'implicit-learning'\n      });\n    }\n\n    return issues;\n  }\n\n  private getBadLinesFromDiff(diff: string, file: string, type: 'revert' | 'fix'): string[] {\n    const badLines: string[] = [];\n    const lines = diff.split('\\n');\n    let inTargetFile = false;\n\n    for (const line of lines) {\n      if (line.startsWith('+++ b/') || line.startsWith('--- a/')) {\n        inTargetFile = line.includes(file);\n        continue;\n      }\n\n      if (!inTargetFile) continue;\n\n      if (type === 'fix' && line.startsWith('-') && !line.startsWith('---')) {\n        badLines.push(line.slice(1));\n      } else if (type === 'revert' && line.startsWith('+') && !line.startsWith('+++')) {\n        badLines.push(line.slice(1));\n      }\n    }\n\n    return badLines;\n  }\n}\n","import path from 'node:path';\n\nimport { analyzeDiff, type DiffSummary } from './diff-analyzer.js';\nimport {\n  getStagedChanges,\n  getUncommittedChanges,\n  getWorkingTreeDiff,\n  type Change\n} from './git.js';\nimport { ContextGraph } from '../context/graph.js';\nimport type { FileNode, FileNodeData } from '../context/nodes.js';\n\nexport interface PerceptionResult {\n  staged: Change[];\n  unstaged: Change[];\n  diffSummary: DiffSummary;\n  changeNodeId?: string;\n}\n\nexport async function perceiveCurrentChanges(\n  projectPath: string,\n  graph?: ContextGraph\n): Promise<PerceptionResult> {\n  const ctxGraph = graph ?? new ContextGraph(projectPath);\n\n  const [staged, unstaged] = await Promise.all([\n    getStagedChanges(projectPath),\n    getUncommittedChanges(projectPath)\n  ]);\n\n  const stagedDiff = await getWorkingTreeDiff(projectPath, true);\n  const unstagedDiff = await getWorkingTreeDiff(projectPath, false);\n  const combinedDiff = [stagedDiff, unstagedDiff].filter(Boolean).join('\\n');\n  const diffSummary = analyzeDiff(combinedDiff);\n\n  const filesTouched = new Set<string>();\n  staged.forEach((c) => filesTouched.add(c.path));\n  unstaged.forEach((c) => filesTouched.add(c.path));\n  diffSummary.files.forEach((f) => filesTouched.add(f.filePath));\n\n  const changeId = await upsertWorkingChange(ctxGraph, Array.from(filesTouched), projectPath);\n\n  const result: PerceptionResult = {\n    staged,\n    unstaged,\n    diffSummary\n  };\n  if (changeId) result.changeNodeId = changeId;\n  return result;\n}\n\nasync function upsertWorkingChange(\n  graph: ContextGraph,\n  files: string[],\n  projectPath: string\n): Promise<string | undefined> {\n  if (files.length === 0) return undefined;\n\n  const now = new Date().toISOString();\n  const change = await graph.addNode('change', {\n    commitHash: null,\n    files,\n    message: 'workspace changes',\n    diff: null,\n    author: null,\n    timestamp: now,\n    outcome: 'unknown'\n  });\n\n  for (const filePath of files) {\n    const fileNode = await ensureFileNode(graph, filePath, projectPath);\n    await graph.addEdge(change.id, fileNode.id, 'affects');\n  }\n\n  return change.id;\n}\n\nasync function ensureFileNode(\n  graph: ContextGraph,\n  filePath: string,\n  projectPath: string\n): Promise<FileNode> {\n  const normalized = path.resolve(projectPath, filePath);\n  const existing = await graph.getNode('file', normalized);\n\n  const now = new Date().toISOString();\n  if (existing) {\n    const data = existing.data as FileNodeData;\n    await graph.updateNode('file', existing.id, {\n      changeCount: (data.changeCount ?? 0) + 1,\n      lastChanged: now\n    });\n    return (await graph.getNode('file', existing.id)) as FileNode;\n  }\n\n  const data: FileNodeData = {\n    path: filePath,\n    extension: path.extname(filePath),\n    purpose: '',\n    riskLevel: 'medium',\n    whyRisky: null,\n    changeCount: 1,\n    lastChanged: now,\n    incidentCount: 0,\n    createdAt: now\n  };\n\n  return (await graph.addNode('file', data)) as FileNode;\n}\n","export interface DiffFileSummary {\n  filePath: string;\n  added: number;\n  removed: number;\n  functionsModified: string[];\n  riskyPatterns: string[];\n}\n\nexport interface DiffSummary {\n  files: DiffFileSummary[];\n  totalAdded: number;\n  totalRemoved: number;\n  riskyFiles: string[];\n}\n\nconst RISKY_PATTERNS = [/auth/i, /token/i, /password/i, /secret/i, /validate/i, /sanitize/i];\n\nexport function analyzeDiff(diff: string): DiffSummary {\n  const files: DiffFileSummary[] = [];\n  let current: DiffFileSummary | null = null;\n\n  const lines = diff.split('\\n');\n\n  for (const line of lines) {\n    if (line.startsWith('+++ b/')) {\n      const filePath = line.replace('+++ b/', '').trim();\n      current = {\n        filePath,\n        added: 0,\n        removed: 0,\n        functionsModified: [],\n        riskyPatterns: []\n      };\n      files.push(current);\n      continue;\n    }\n\n    if (!current) {\n      continue;\n    }\n\n    if (line.startsWith('@@')) {\n      // Capture function names or signatures in hunk headers\n      const match = line.match(/@@.*?(function\\s+([\\w$]+)|class\\s+([\\w$]+)|([\\w$]+\\s*\\())/i);\n      const fnName = match?.[2] || match?.[3] || match?.[4];\n      if (fnName) {\n        current.functionsModified.push(fnName.replace('(', '').trim());\n      }\n      continue;\n    }\n\n    if (line.startsWith('+') && !line.startsWith('+++')) {\n      current.added += 1;\n      markRisk(line, current);\n    } else if (line.startsWith('-') && !line.startsWith('---')) {\n      current.removed += 1;\n      markRisk(line, current);\n    }\n  }\n\n  const totalAdded = files.reduce((acc, f) => acc + f.added, 0);\n  const totalRemoved = files.reduce((acc, f) => acc + f.removed, 0);\n  const riskyFiles = files.filter((f) => f.riskyPatterns.length > 0).map((f) => f.filePath);\n\n  return {\n    files,\n    totalAdded,\n    totalRemoved,\n    riskyFiles\n  };\n}\n\nfunction markRisk(line: string, file: DiffFileSummary): void {\n  for (const pattern of RISKY_PATTERNS) {\n    if (pattern.test(line)) {\n      const label = pattern.toString();\n      if (!file.riskyPatterns.includes(label)) {\n        file.riskyPatterns.push(label);\n      }\n    }\n  }\n}\n","import path from 'node:path';\n\nimport type { RiskLevel } from '../types/index.js';\nimport type { PatternNode } from '../context/types.js';\nimport type { ContextGraph } from '../context/graph.js';\nimport type { FileNodeData, IncidentNode } from '../context/nodes.js';\n\nexport interface FileRiskResult {\n  file: string;\n  score: number;\n  level: RiskLevel;\n  reasons: string[];\n  incidents: IncidentNode[];\n  matchedPatterns: PatternNode[];\n}\n\nexport interface ChangeRiskResult {\n  files: FileRiskResult[];\n  overall: RiskLevel;\n  score: number;\n  shouldEscalate: boolean;\n}\n\nconst BASE_RISK: Record<RiskLevel, number> = {\n  low: 10,\n  medium: 35,\n  high: 65,\n  critical: 85\n};\n\nconst SENSITIVE_PATHS: { pattern: RegExp; weight: number; reason: string }[] = [\n  { pattern: /auth|login|token|session/i, weight: 20, reason: 'touches authentication' },\n  { pattern: /payment|billing|stripe|paypal|checkout/i, weight: 25, reason: 'touches payments' },\n  { pattern: /secret|credential|env|config\\/security/i, weight: 15, reason: 'touches secrets/security config' },\n];\n\nfunction levelFromScore(score: number): RiskLevel {\n  if (score >= 90) return 'critical';\n  if (score >= 65) return 'high';\n  if (score >= 40) return 'medium';\n  return 'low';\n}\n\nexport async function scoreFile(\n  graph: ContextGraph,\n  filePath: string,\n  matchedPatterns: PatternNode[] = []\n): Promise<FileRiskResult> {\n  const reasons: string[] = [];\n  const normalized = path.resolve(graph.projectRoot, filePath);\n  const node = await graph.getNode('file', normalized);\n  const incidents = await graph.getIncidentsForFile(filePath);\n\n  let score = 10;\n  const data = node?.data as FileNodeData | undefined;\n\n  if (data) {\n    score = BASE_RISK[data.riskLevel] ?? score;\n    reasons.push(`baseline ${data.riskLevel}`);\n\n    if (data.incidentCount > 0) {\n      const incBoost = Math.min(data.incidentCount * 12, 36);\n      score += incBoost;\n      reasons.push(`historical incidents (+${incBoost})`);\n    }\n\n    if (data.changeCount > 5) {\n      const changeBoost = Math.min((data.changeCount - 5) * 2, 12);\n      score += changeBoost;\n      reasons.push(`frequent changes (+${changeBoost})`);\n    }\n\n    if (data.lastChanged) {\n      const lastChanged = new Date(data.lastChanged).getTime();\n      const days = (Date.now() - lastChanged) / (1000 * 60 * 60 * 24);\n      if (days > 60 && data.incidentCount === 0) {\n        score -= 5;\n        reasons.push('stable for 60d (-5)');\n      }\n    }\n  }\n\n  for (const { pattern, weight, reason } of SENSITIVE_PATHS) {\n    if (pattern.test(filePath)) {\n      score += weight;\n      reasons.push(reason);\n    }\n  }\n\n  if (matchedPatterns.length > 0) {\n    const patternBoost = Math.min(\n      matchedPatterns.reduce((acc, p) => acc + (p.data.confidence ?? 50) / 10, 0),\n      20\n    );\n    score += patternBoost;\n    reasons.push(`pattern match (+${Math.round(patternBoost)})`);\n  }\n\n  if (incidents.length > 0) {\n    const timestamps = incidents\n      .map((i) => new Date(i.data.timestamp).getTime())\n      .sort((a, b) => b - a);\n    const recent = timestamps[0]!;\n    const daysSince = (Date.now() - recent) / (1000 * 60 * 60 * 24);\n    if (daysSince > 90) {\n      score -= 5;\n      reasons.push('no incidents in 90d (-5)');\n    } else {\n      score += 8;\n      reasons.push('recent incident (+8)');\n    }\n  }\n\n  const level = levelFromScore(score);\n  return {\n    file: filePath,\n    score,\n    level,\n    reasons,\n    incidents,\n    matchedPatterns\n  };\n}\n\nexport async function scoreChangeSet(\n  graph: ContextGraph,\n  files: string[],\n  patternMatches: Record<string, PatternNode[]> = {}\n): Promise<ChangeRiskResult> {\n  const fileResults: FileRiskResult[] = [];\n\n  for (const file of files) {\n    const patterns = patternMatches[file] ?? [];\n    fileResults.push(await scoreFile(graph, file, patterns));\n  }\n\n  // Aggregate: use max file score, but boost if many files touched\n  const maxScore = Math.max(...fileResults.map((f) => f.score), 10);\n  const spreadBoost = files.length > 5 ? Math.min((files.length - 5) * 2, 10) : 0;\n  const overallScore = maxScore + spreadBoost;\n  const overall = levelFromScore(overallScore);\n\n  const shouldEscalate = overall === 'critical' || overall === 'high';\n\n  return {\n    files: fileResults,\n    overall,\n    score: overallScore,\n    shouldEscalate\n  };\n}\n","import { ContextGraph } from '../context/graph.js';\nimport type { PatternNode } from '../context/nodes.js';\n\nexport interface PatternMatch {\n  file: string;\n  pattern: PatternNode;\n  confidence: number;\n  isAntiPattern: boolean;\n}\n\nexport async function matchPatternsForFiles(\n  graph: ContextGraph,\n  files: string[]\n): Promise<{ matches: PatternMatch[]; byFile: Record<string, PatternNode[]> }> {\n  const matches: PatternMatch[] = [];\n  const byFile: Record<string, PatternNode[]> = {};\n\n  for (const file of files) {\n    const patterns = await graph.getPatternsForFile(file);\n    if (patterns.length === 0) continue;\n\n    byFile[file] = patterns;\n\n    for (const pattern of patterns) {\n      matches.push({\n        file,\n        pattern,\n        confidence: pattern.data.confidence,\n        isAntiPattern: pattern.data.isAntiPattern\n      });\n    }\n  }\n\n  return { matches, byFile };\n}\n","import type { CodeContext, Agent, TriagingConfig } from '../types/index.js';\n\nexport class Triager {\n  constructor(_config?: Partial<TriagingConfig>) {\n    // Config no longer used - Trie is now purely a decision ledger\n  }\n\n  /**\n   * Triage a change to select appropriate agents\n   * Note: Skills/agents have been removed - Trie is now purely a decision ledger\n   */\n  async triage(\n    _context: CodeContext,\n    _forceAgents?: string[]\n  ): Promise<Agent[]> {\n    // No skills to triage - return empty array\n    // Trie now focuses on decision ledger and learning from incidents\n    return [];\n  }\n\n  /**\n   * Get all available agent names (deprecated - returns empty array)\n   */\n  getAvailableAgents(): string[] {\n    return [];\n  }\n}\n","import { Worker } from 'worker_threads';\nimport { cpus } from 'os';\nimport { existsSync } from 'fs';\nimport { fileURLToPath } from 'url';\nimport type { Agent, AgentResult, ScanContext } from '../types/index.js';\nimport { StreamingManager } from './streaming.js';\nimport { CacheManager } from './cache-manager.js';\nimport { isInteractiveMode } from './progress.js';\n\ninterface ParallelTask {\n  agent: Agent;\n  files: string[];\n  context: ScanContext;\n  priority: number;\n  timeoutMs: number;\n}\n\ninterface ParallelResult {\n  agent: string;\n  result: AgentResult;\n  fromCache: boolean;\n  executionTime: number;\n}\n\n/**\n * Parallel execution engine for Trie agents\n *\n * Features:\n * - True parallel execution using worker threads\n * - Intelligent scheduling based on agent priority\n * - Result caching and cache-aware scheduling\n * - Real-time progress streaming\n * - Dynamic resource management\n */\nexport class ParallelExecutor {\n  private maxWorkers: number;\n  private cache: CacheManager | null;\n  private streaming?: StreamingManager;\n  private activeWorkers: Set<Worker> = new Set();\n  private cacheEnabled: boolean = true;\n  private useWorkerThreads: boolean = false;\n  private workerAvailable: boolean | null = null;\n  private warnedWorkerFallback: boolean = false;\n\n  constructor(\n    cacheManager: CacheManager | null,\n    maxWorkers: number = Math.max(2, Math.min(cpus().length - 1, 8)),\n    options?: { cacheEnabled?: boolean; useWorkerThreads?: boolean }\n  ) {\n    this.maxWorkers = maxWorkers;\n    this.cache = cacheManager;\n    this.cacheEnabled = options?.cacheEnabled ?? true;\n    this.useWorkerThreads = options?.useWorkerThreads ?? false;\n  }\n\n  /**\n   * Set streaming manager for real-time updates\n   */\n  setStreaming(streaming: StreamingManager): void {\n    this.streaming = streaming;\n  }\n\n  /**\n   * Execute agents in parallel with intelligent scheduling\n   */\n  async executeAgents(\n    agents: Agent[],\n    files: string[],\n    context: ScanContext\n  ): Promise<Map<string, AgentResult>> {\n    if (agents.length === 0) {\n      return new Map();\n    }\n\n    // Initialize streaming\n    if (this.streaming && this.streaming.getProgress().totalFiles === 0) {\n      this.streaming.startScan(files.length);\n    }\n\n    // Check cache for existing results\n    const cacheResults = new Map<string, AgentResult>();\n    const uncachedTasks: ParallelTask[] = [];\n\n    for (const agent of agents) {\n      const cached = await this.checkAgentCache(agent, files);\n      if (cached) {\n        cacheResults.set(agent.name, cached);\n        this.streaming?.completeAgent(agent.name, cached.issues);\n      } else {\n        uncachedTasks.push({\n          agent,\n          files,\n          context,\n          priority: agent.priority?.tier || 2,\n          timeoutMs: context?.config?.timeoutMs || 120000\n        });\n      }\n    }\n\n    // Sort tasks by priority (tier 1 = highest priority)\n    uncachedTasks.sort((a, b) => a.priority - b.priority);\n\n    // Execute uncached tasks in parallel\n    const parallelResults = await this.executeTasksParallel(uncachedTasks);\n\n    // Cache new results\n    await this.cacheResults(parallelResults);\n\n    // Combine cached and new results\n    const allResults = new Map<string, AgentResult>();\n\n    // Add cached results\n    for (const [agent, result] of cacheResults) {\n      allResults.set(agent, result);\n    }\n\n    // Add new results\n    for (const result of parallelResults) {\n      allResults.set(result.agent, result.result);\n    }\n\n    // Complete streaming\n    const allIssues = Array.from(allResults.values()).flatMap(r => r.issues);\n    this.streaming?.completeScan(allIssues);\n\n    return allResults;\n  }\n\n  /**\n   * Check if agent has cached results for given files\n   */\n  private async checkAgentCache(agent: Agent, files: string[]): Promise<AgentResult | null> {\n    if (!this.cacheEnabled || !this.cache) {\n      return null;\n    }\n\n    const cachedIssues = await this.cache.getCachedBatch(files, agent.name);\n\n    // Only use cache if we have results for ALL files\n    if (cachedIssues.size === files.length) {\n      const allIssues = Array.from(cachedIssues.values()).flat();\n      return {\n        agent: agent.name,\n        issues: allIssues,\n        executionTime: 0, // Cached\n        success: true,\n        metadata: {\n          filesAnalyzed: files.length,\n          linesAnalyzed: 0\n        }\n      };\n    }\n\n    return null;\n  }\n\n  /**\n   * Execute tasks in parallel batches\n   */\n  private async executeTasksParallel(tasks: ParallelTask[]): Promise<ParallelResult[]> {\n    if (tasks.length === 0) {\n      return [];\n    }\n\n    const results: ParallelResult[] = [];\n    const batches = this.createBatches(tasks, this.maxWorkers);\n\n    for (const batch of batches) {\n      const batchResults = await Promise.all(\n        batch.map(task => this.executeTask(task))\n      );\n      results.push(...batchResults);\n    }\n\n    return results;\n  }\n\n  /**\n   * Create batches for parallel execution\n   */\n  private createBatches(tasks: ParallelTask[], batchSize: number): ParallelTask[][] {\n    const batches: ParallelTask[][] = [];\n\n    for (let i = 0; i < tasks.length; i += batchSize) {\n      batches.push(tasks.slice(i, i + batchSize));\n    }\n\n    return batches;\n  }\n\n  /**\n   * Execute a single task\n   */\n  private async executeTask(task: ParallelTask): Promise<ParallelResult> {\n    const startTime = Date.now();\n\n    this.streaming?.startAgent(task.agent.name);\n\n    try {\n      const result = this.canUseWorkers()\n        ? await this.executeTaskInWorker(task)\n        : await task.agent.scan(task.files, task.context);\n      const executionTime = Date.now() - startTime;\n\n      this.streaming?.completeAgent(task.agent.name, result.issues);\n\n      return {\n        agent: task.agent.name,\n        result,\n        fromCache: false,\n        executionTime\n      };\n    } catch (error) {\n      const executionTime = Date.now() - startTime;\n      const errorMessage = error instanceof Error ? error.message : String(error);\n\n      this.streaming?.reportError(new Error(errorMessage), `Agent: ${task.agent.name}`);\n\n      return {\n        agent: task.agent.name,\n        result: {\n          agent: task.agent.name,\n          issues: [],\n          executionTime,\n          success: false,\n          error: errorMessage\n        },\n        fromCache: false,\n        executionTime\n      };\n    }\n  }\n\n  private canUseWorkers(): boolean {\n    if (!this.useWorkerThreads) {\n      return false;\n    }\n    if (this.workerAvailable !== null) {\n      return this.workerAvailable;\n    }\n    const workerUrl = this.getWorkerUrl();\n    this.workerAvailable = existsSync(fileURLToPath(workerUrl));\n    if (!this.workerAvailable && !this.warnedWorkerFallback && !isInteractiveMode()) {\n      console.error('Worker threads unavailable; falling back to in-process agents.');\n      this.warnedWorkerFallback = true;\n    }\n    return this.workerAvailable;\n  }\n\n  private getWorkerUrl(): URL {\n    const distDir = new URL('.', import.meta.url);\n    return new URL('workers/agent-worker.js', distDir);\n  }\n\n  private async executeTaskInWorker(task: ParallelTask): Promise<AgentResult> {\n    // Use dirname to get the dist folder, then resolve to workers subfolder\n    // This works whether the code is bundled into chunks or in utils/ folder\n    const workerUrl = this.getWorkerUrl();\n\n    return new Promise((resolve, reject) => {\n      const worker = new Worker(workerUrl, {\n        workerData: {\n          agentName: task.agent.name,\n          files: task.files,\n          context: task.context\n        }\n      } as ConstructorParameters<typeof Worker>[1]);\n\n      this.activeWorkers.add(worker);\n\n      const timeout = setTimeout(() => {\n        worker.terminate().catch(() => undefined);\n        reject(new Error(`Agent ${task.agent.name} timed out after ${task.timeoutMs}ms`));\n      }, task.timeoutMs);\n\n      worker.on('message', (message) => {\n        if (message?.type === 'result') {\n          clearTimeout(timeout);\n          resolve(message.result as AgentResult);\n        } else if (message?.type === 'error') {\n          clearTimeout(timeout);\n          reject(new Error(message.error));\n        }\n      });\n\n      worker.on('error', (error) => {\n        clearTimeout(timeout);\n        reject(error);\n      });\n\n      worker.on('exit', (code) => {\n        this.activeWorkers.delete(worker);\n        if (code !== 0) {\n          clearTimeout(timeout);\n          reject(new Error(`Worker stopped with exit code ${code}`));\n        }\n      });\n    });\n  }\n\n  /**\n   * Cache results for future use\n   */\n  private async cacheResults(results: ParallelResult[]): Promise<void> {\n    if (!this.cacheEnabled || !this.cache) {\n      return;\n    }\n\n    const cachePromises = results\n      .filter(r => r.result.success && !r.fromCache)\n      .map(r => {\n        const issuesByFile = this.groupIssuesByFile(r.result.issues);\n        const perFilePromises = Object.entries(issuesByFile).map(([file, issues]) =>\n          this.cache!.setCached(file, r.agent, issues, r.executionTime)\n        );\n        return Promise.all(perFilePromises);\n      });\n\n    await Promise.allSettled(cachePromises);\n  }\n\n  /**\n   * Cleanup resources\n   */\n  async cleanup(): Promise<void> {\n    // Terminate any active workers\n    const terminationPromises = Array.from(this.activeWorkers).map(worker =>\n      worker.terminate()\n    );\n\n    await Promise.allSettled(terminationPromises);\n    this.activeWorkers.clear();\n  }\n\n  private groupIssuesByFile(issues: AgentResult['issues']): Record<string, AgentResult['issues']> {\n    const grouped: Record<string, AgentResult['issues']> = {};\n\n    for (const issue of issues) {\n      if (!grouped[issue.file]) {\n        grouped[issue.file] = [];\n      }\n      grouped[issue.file]!.push(issue);\n    }\n\n    return grouped;\n  }\n}\n\n/**\n * Smart agent prioritization based on dependencies and execution characteristics\n */\nexport function prioritizeAgents(agents: Agent[]): Agent[] {\n  const prioritized = [...agents];\n\n  // Sort by priority tier, then by estimated execution time\n  prioritized.sort((a, b) => {\n    const aTier = a.priority?.tier || 2;\n    const bTier = b.priority?.tier || 2;\n\n    if (aTier !== bTier) {\n      return aTier - bTier; // Lower tier = higher priority\n    }\n\n    // Within same tier, prioritize faster agents\n    const aTime = a.priority?.estimatedTimeMs || 1000;\n    const bTime = b.priority?.estimatedTimeMs || 1000;\n\n    return aTime - bTime;\n  });\n\n  return prioritized;\n}\n\n/**\n * Calculate optimal concurrency based on system resources and agent characteristics\n */\nexport function calculateOptimalConcurrency(): number {\n  const numCPUs = cpus().length;\n  const availableMemoryGB = process.memoryUsage().rss / 1024 / 1024 / 1024;\n\n  // Conservative concurrency for stability\n  let optimal = Math.max(2, Math.min(numCPUs - 1, 8));\n\n  // Reduce concurrency if low memory\n  if (availableMemoryGB < 2) {\n    optimal = Math.max(2, Math.floor(optimal / 2));\n  }\n\n  // Increase slightly for systems with lots of CPU cores\n  if (numCPUs > 8) {\n    optimal = Math.min(optimal + 2, 12);\n  }\n\n  return optimal;\n}","import { readFile, writeFile, mkdir, stat } from 'fs/promises';\nimport { join } from 'path';\nimport { createHash } from 'crypto';\nimport type { Issue } from '../types/index.js';\nimport { isInteractiveMode } from './progress.js';\nimport { getTrieDirectory } from './workspace.js';\n\ninterface CacheEntry {\n  version: string;\n  timestamp: number;\n  fileHash: string;\n  fileSize: number;\n  agent: string;\n  issues: Issue[];\n  executionTime: number;\n}\n\ninterface CacheIndex {\n  version: string;\n  created: number;\n  entries: Record<string, CacheEntry>;\n}\n\nexport class CacheManager {\n  private cacheDir: string;\n  private indexPath: string;\n  private readonly VERSION = '1.0.0';\n  private readonly MAX_AGE_MS = 24 * 60 * 60 * 1000; // 24 hours\n  private readonly MAX_ENTRIES = 1000;\n\n  constructor(baseDir: string) {\n    this.cacheDir = join(getTrieDirectory(baseDir), 'cache');\n    this.indexPath = join(this.cacheDir, 'index.json');\n  }\n\n  /**\n   * Generate cache key for a file and agent combination\n   */\n  private generateCacheKey(filePath: string, agent: string, fileHash: string): string {\n    const key = `${filePath}:${agent}:${fileHash}`;\n    return createHash('sha256').update(key).digest('hex').slice(0, 16);\n  }\n\n  /**\n   * Get file hash for cache validation\n   */\n  private async getFileHash(filePath: string): Promise<{ hash: string; size: number; mtime: number }> {\n    try {\n      const content = await readFile(filePath, 'utf-8');\n      const stats = await stat(filePath);\n      const hash = createHash('sha256').update(content).digest('hex').slice(0, 16);\n      return {\n        hash,\n        size: stats.size,\n        mtime: stats.mtime.getTime()\n      };\n    } catch {\n      return { hash: '', size: 0, mtime: 0 };\n    }\n  }\n\n  /**\n   * Load cache index\n   */\n  private async loadIndex(): Promise<CacheIndex> {\n    try {\n      const content = await readFile(this.indexPath, 'utf-8');\n      return JSON.parse(content);\n    } catch {\n      return {\n        version: this.VERSION,\n        created: Date.now(),\n        entries: {}\n      };\n    }\n  }\n\n  /**\n   * Save cache index\n   */\n  private async saveIndex(index: CacheIndex): Promise<void> {\n    try {\n      await mkdir(this.cacheDir, { recursive: true });\n      await writeFile(this.indexPath, JSON.stringify(index, null, 2));\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to save cache index:', error);\n      }\n    }\n  }\n\n  /**\n   * Clean up expired entries\n   */\n  private cleanupExpired(index: CacheIndex): CacheIndex {\n    const now = Date.now();\n    const validEntries: Record<string, CacheEntry> = {};\n\n    for (const [key, entry] of Object.entries(index.entries)) {\n      if (now - entry.timestamp < this.MAX_AGE_MS) {\n        validEntries[key] = entry;\n      }\n    }\n\n    // If still too many, keep the most recent ones\n    const entries = Object.entries(validEntries);\n    if (entries.length > this.MAX_ENTRIES) {\n      entries.sort((a, b) => b[1].timestamp - a[1].timestamp);\n      const limited = entries.slice(0, this.MAX_ENTRIES);\n      return {\n        ...index,\n        entries: Object.fromEntries(limited)\n      };\n    }\n\n    return {\n      ...index,\n      entries: validEntries\n    };\n  }\n\n  /**\n   * Get cached result for a file and agent\n   * \n   * Cache automatically invalidates when files change:\n   * - Cache key includes file hash: hash(filePath:agent:fileHash)\n   * - When file changes, hash changes, so cache key changes\n   * - Old cache entry won't be found (different key)\n   * - File is automatically rescanned\n   * \n   * This means cache auto-updates when Claude fixes code - no manual invalidation needed!\n   */\n  async getCached(filePath: string, agent: string): Promise<Issue[] | null> {\n    try {\n      const { hash, size: _size, mtime: _mtime } = await this.getFileHash(filePath);\n      if (!hash) return null;\n\n      const index = await this.loadIndex();\n      const cacheKey = this.generateCacheKey(filePath, agent, hash);\n      const entry = index.entries[cacheKey];\n\n      if (!entry) return null;\n\n      // Validate entry is still fresh\n      // Double-check hash matches (defense in depth)\n      const isValid = entry.fileHash === hash &&\n                     entry.version === this.VERSION &&\n                     (Date.now() - entry.timestamp) < this.MAX_AGE_MS;\n\n      if (!isValid) {\n        delete index.entries[cacheKey];\n        await this.saveIndex(index);\n        return null;\n      }\n\n      return entry.issues;\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Cache result for a file and agent\n   */\n  async setCached(\n    filePath: string,\n    agent: string,\n    issues: Issue[],\n    executionTime: number\n  ): Promise<void> {\n    try {\n      const { hash, size } = await this.getFileHash(filePath);\n      if (!hash) return;\n\n      const index = await this.loadIndex();\n      const cacheKey = this.generateCacheKey(filePath, agent, hash);\n\n      index.entries[cacheKey] = {\n        version: this.VERSION,\n        timestamp: Date.now(),\n        fileHash: hash,\n        fileSize: size,\n        agent,\n        issues,\n        executionTime\n      };\n\n      // Clean up old entries\n      const cleanedIndex = this.cleanupExpired(index);\n      await this.saveIndex(cleanedIndex);\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to cache result:', error);\n      }\n    }\n  }\n\n  /**\n   * Check if multiple files have cached results\n   */\n  async getCachedBatch(files: string[], agent: string): Promise<Map<string, Issue[]>> {\n    const results = new Map<string, Issue[]>();\n\n    await Promise.all(\n      files.map(async (file) => {\n        const cached = await this.getCached(file, agent);\n        if (cached) {\n          results.set(file, cached);\n        }\n      })\n    );\n\n    return results;\n  }\n\n  /**\n   * Get cache statistics\n   */\n  async getStats(): Promise<{\n    totalEntries: number;\n    totalSizeKB: number;\n    oldestEntry: number | null;\n    newestEntry: number | null;\n    agents: string[];\n    hitRate?: number;\n  }> {\n    try {\n      const index = await this.loadIndex();\n      const entries = Object.values(index.entries);\n\n      const totalSizeKB = entries.reduce((acc, entry) => acc + entry.fileSize, 0) / 1024;\n      const timestamps = entries.map(e => e.timestamp);\n      const agents = [...new Set(entries.map(e => e.agent))];\n\n      return {\n        totalEntries: entries.length,\n        totalSizeKB: Math.round(totalSizeKB),\n        oldestEntry: timestamps.length > 0 ? Math.min(...timestamps) : null,\n        newestEntry: timestamps.length > 0 ? Math.max(...timestamps) : null,\n        agents\n      };\n    } catch {\n      return {\n        totalEntries: 0,\n        totalSizeKB: 0,\n        oldestEntry: null,\n        newestEntry: null,\n        agents: []\n      };\n    }\n  }\n\n  /**\n   * Clean up stale cache entries by verifying file hashes\n   * This removes entries where files have changed or no longer exist\n   * Called periodically to keep cache clean\n   * \n   * Note: Since cache keys are hashed, we can't easily reverse-engineer file paths.\n   * However, when getCached() is called, it naturally invalidates stale entries\n   * by checking if the current file hash matches the cached hash. This method\n   * proactively cleans up entries for known changed files.\n   */\n  async cleanupStaleEntries(filePaths?: string[]): Promise<number> {\n    try {\n      const index = await this.loadIndex();\n      let removedCount = 0;\n      const keysToRemove: string[] = [];\n\n      // If specific files provided, check those files against all cache entries\n      // We can't perfectly match entries to files without storing paths, but we can\n      // try to identify likely matches by checking if regenerating keys matches\n      if (filePaths && filePaths.length > 0) {\n        // Get all unique agents from cache entries\n        const agents = new Set<string>();\n        for (const entry of Object.values(index.entries)) {\n          agents.add(entry.agent);\n        }\n\n        // For each file+agent combination, check if cache entry is stale\n        for (const filePath of filePaths) {\n          try {\n            const { hash: currentHash } = await this.getFileHash(filePath);\n            if (!currentHash) {\n              // File doesn't exist - can't clean up without knowing which entries are for it\n              continue;\n            }\n\n            // Check each agent's potential cache entries for this file\n            for (const agent of agents) {\n              // Check all entries to find ones that might be for this file\n              for (const [key, entry] of Object.entries(index.entries)) {\n                if (entry.agent !== agent) continue;\n                \n                // If entry hash doesn't match current hash, it might be stale\n                if (entry.fileHash !== currentHash) {\n                  // Check if this key was generated with the old hash for this file\n                  const oldKey = this.generateCacheKey(filePath, agent, entry.fileHash);\n                  if (oldKey === key) {\n                    // This entry is for this file but hash doesn't match - stale!\n                    keysToRemove.push(key);\n                    removedCount++;\n                  }\n                }\n              }\n            }\n          } catch {\n            // File doesn't exist or can't be read - skip\n            continue;\n          }\n        }\n      }\n\n      // Remove stale entries (avoid duplicates)\n      const uniqueKeys = [...new Set(keysToRemove)];\n      for (const key of uniqueKeys) {\n        delete index.entries[key];\n      }\n\n      if (removedCount > 0) {\n        await this.saveIndex(index);\n      }\n\n      return removedCount;\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to cleanup stale cache entries:', error);\n      }\n      return 0;\n    }\n  }\n\n  /**\n   * Clear all cache\n   */\n  async clear(): Promise<void> {\n    try {\n      const emptyIndex: CacheIndex = {\n        version: this.VERSION,\n        created: Date.now(),\n        entries: {}\n      };\n      await this.saveIndex(emptyIndex);\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to clear cache:', error);\n      }\n    }\n  }\n}","import type { Agent, AgentResult, ScanContext } from '../types/index.js';\nimport { ParallelExecutor, calculateOptimalConcurrency } from '../utils/parallel-executor.js';\nimport { CacheManager } from '../utils/cache-manager.js';\nimport type { StreamingManager } from '../utils/streaming.js';\nimport { isInteractiveMode } from '../utils/progress.js';\n\nexport class Executor {\n  async executeAgents(\n    agents: Agent[],\n    files: string[],\n    context: ScanContext,\n    options?: {\n      streaming?: StreamingManager;\n      parallel?: boolean;\n      cacheEnabled?: boolean;\n      maxConcurrency?: number;\n      useWorkerThreads?: boolean;\n      timeoutMs?: number;\n    }\n  ): Promise<AgentResult[]> {\n    const parallel = options?.parallel ?? true;\n    const cacheEnabled = options?.cacheEnabled ?? true;\n    const maxConcurrency = options?.maxConcurrency ?? calculateOptimalConcurrency();\n    const useWorkerThreads = options?.useWorkerThreads ?? false;\n\n    if (!isInteractiveMode()) {\n      console.error(`Executing ${agents.length} scouts ${parallel ? 'in parallel' : 'sequentially'}...`);\n    }\n\n    if (parallel) {\n      const cacheManager = cacheEnabled ? new CacheManager(context.workingDir) : null;\n      const executor = new ParallelExecutor(cacheManager, maxConcurrency, {\n        cacheEnabled,\n        useWorkerThreads\n      });\n\n      if (options?.streaming) {\n        executor.setStreaming(options.streaming);\n      }\n\n      const results = await executor.executeAgents(agents, files, {\n        ...context,\n        config: { timeoutMs: options?.timeoutMs ?? 120000 }\n      });\n\n      return agents.map(agent => results.get(agent.name)!).filter(Boolean);\n    }\n\n    // Execute scouts in parallel with timeout\n    const promises = agents.map(agent =>\n      this.executeAgentWithTimeout(agent, files, context, options?.timeoutMs ?? 30000)\n    );\n\n    try {\n      const results = await Promise.allSettled(promises);\n      return results.map((result, index) => {\n        if (result.status === 'fulfilled') {\n          if (!isInteractiveMode()) {\n            console.error(`${agents[index]!.name} completed in ${result.value.executionTime}ms`);\n          }\n          return result.value;\n        } else {\n          if (!isInteractiveMode()) {\n            console.error(`${agents[index]!.name} failed:`, result.reason);\n          }\n          return {\n            agent: agents[index]!.name,\n            issues: [],\n            executionTime: 0,\n            success: false,\n            error: result.reason instanceof Error ? result.reason.message : String(result.reason)\n          };\n        }\n      });\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.error('Executor error:', error);\n      }\n      return agents.map(agent => ({\n        agent: agent.name,\n        issues: [],\n        executionTime: 0,\n        success: false,\n        error: 'Execution failed'\n      }));\n    }\n  }\n\n  private async executeAgentWithTimeout(\n    agent: Agent,\n    files: string[],\n    context: ScanContext,\n    timeoutMs: number = 30000 // 30 second timeout\n  ): Promise<AgentResult> {\n    return new Promise(async (resolve, reject) => {\n      const timeout = setTimeout(() => {\n        reject(new Error(`Agent ${agent.name} timed out after ${timeoutMs}ms`));\n      }, timeoutMs);\n\n      try {\n        const result = await agent.scan(files, context);\n        clearTimeout(timeout);\n        resolve(result);\n      } catch (error) {\n        clearTimeout(timeout);\n        reject(error);\n      }\n    });\n  }\n}","import { ContextGraph } from '../context/graph.js';\nimport type { IncidentNode, PatternNode } from '../context/nodes.js';\nimport type { RiskLevel, AgentResult, CodeContext, ScanContext } from '../types/index.js';\nimport { scoreChangeSet, type ChangeRiskResult, type FileRiskResult } from './risk-scorer.js';\nimport { matchPatternsForFiles } from './pattern-matcher.js';\nimport { Triager } from '../orchestrator/triager.js';\nimport { Executor } from '../orchestrator/executor.js';\n\nexport interface Reasoning {\n  riskLevel: RiskLevel;\n  shouldBlock: boolean;\n  explanation: string;\n  relevantIncidents: IncidentNode[];\n  matchedPatterns: PatternNode[];\n  recommendation: string;\n  files: FileRiskResult[];\n  agentResults?: AgentResult[];\n}\n\nexport interface HumanReadableReasoning {\n  summary: string;\n  whatIFound: string;\n  howBad: string;\n  whatToDo: string;\n  original: Reasoning;\n}\n\nexport interface ReasonOptions {\n  runAgents?: boolean;\n  codeContext?: CodeContext;\n  scanContext?: Partial<ScanContext>;\n}\n\nfunction buildDefaultCodeContext(): CodeContext {\n  return {\n    changeType: 'general',\n    isNewFeature: false,\n    touchesUserData: false,\n    touchesAuth: false,\n    touchesPayments: false,\n    touchesDatabase: false,\n    touchesAPI: false,\n    touchesUI: false,\n    touchesHealthData: false,\n    touchesSecurityConfig: false,\n    linesChanged: 50,\n    filePatterns: [],\n    framework: 'unknown',\n    language: 'typescript',\n    touchesCrypto: false,\n    touchesFileSystem: false,\n    touchesThirdPartyAPI: false,\n    touchesLogging: false,\n    touchesErrorHandling: false,\n    hasTests: false,\n    complexity: 'medium',\n    patterns: {\n      hasAsyncCode: false,\n      hasFormHandling: false,\n      hasFileUploads: false,\n      hasEmailHandling: false,\n      hasRateLimiting: false,\n      hasWebSockets: false,\n      hasCaching: false,\n      hasQueue: false\n    }\n  };\n}\n\nfunction buildExplanation(result: ChangeRiskResult): string {\n  const top = [...result.files].sort((a, b) => b.score - a.score)[0];\n  if (!top) return `Risk level ${result.overall} (no files provided)`;\n  return `Risk level ${result.overall} because ${top.file} ${top.reasons.join(', ')}`;\n}\n\nfunction buildRecommendation(risk: RiskLevel, hasAntiPattern: boolean): string {\n  if (hasAntiPattern || risk === 'critical') {\n    return 'Block until reviewed: address anti-patterns and rerun targeted tests.';\n  }\n  if (risk === 'high') {\n    return 'Require senior review and run full test suite before merge.';\n  }\n  if (risk === 'medium') {\n    return 'Proceed with caution; run impacted tests and sanity checks.';\n  }\n  return 'Low risk; proceed but keep an eye on recent changes.';\n}\n\nexport async function reasonAboutChanges(\n  projectPath: string,\n  files: string[],\n  options: ReasonOptions = {}\n): Promise<Reasoning> {\n  const graph = new ContextGraph(projectPath);\n  const { matches, byFile } = await matchPatternsForFiles(graph, files);\n  const changeRisk = await scoreChangeSet(graph, files, byFile);\n\n  const incidents: IncidentNode[] = [];\n  for (const file of files) {\n    const fileIncidents = await graph.getIncidentsForFile(file);\n    incidents.push(...fileIncidents);\n  }\n\n  const hasAntiPattern = matches.some((m) => m.isAntiPattern);\n  const riskLevel: RiskLevel = hasAntiPattern ? 'critical' : changeRisk.overall;\n  const shouldBlock = hasAntiPattern || riskLevel === 'critical' || riskLevel === 'high';\n\n  const reasoning: Reasoning = {\n    riskLevel,\n    shouldBlock,\n    explanation: buildExplanation(changeRisk),\n    relevantIncidents: incidents,\n    matchedPatterns: matches.map((m) => m.pattern),\n    recommendation: buildRecommendation(riskLevel, hasAntiPattern),\n    files: changeRisk.files\n  };\n\n  if (options.runAgents) {\n    const codeContext = options.codeContext ?? buildDefaultCodeContext();\n    const triager = new Triager();\n    // Skills removed - decision ledger now handles risk analysis\n    const agents = await triager.triage(codeContext);\n\n    if (agents.length > 0) {\n      const executor = new Executor();\n      const scanContext: ScanContext = {\n        workingDir: projectPath,\n        ...options.scanContext\n      };\n      if (codeContext.framework) scanContext.framework = codeContext.framework;\n      if (codeContext.language) scanContext.language = codeContext.language;\n\n      reasoning.agentResults = await executor.executeAgents(agents, files, scanContext, {\n        parallel: true,\n        timeoutMs: options.scanContext?.config?.timeoutMs ?? 60000\n      });\n    } else {\n      reasoning.agentResults = [];\n    }\n  }\n\n  return reasoning;\n}\n\n// Convenience wrapper to keep future CLI/MCP integration simple\nexport async function reasonAboutChangesHumanReadable(\n  projectPath: string,\n  files: string[],\n  options: ReasonOptions = {}\n): Promise<HumanReadableReasoning> {\n  const reasoning = await reasonAboutChanges(projectPath, files, options);\n\n  const topFile = [...reasoning.files].sort((a, b) => b.score - a.score)[0];\n  const topReasons = topFile?.reasons?.slice(0, 3) ?? [];\n\n  const summaryParts: string[] = [];\n  summaryParts.push(`Risk ${reasoning.riskLevel.toUpperCase()} (${reasoning.shouldBlock ? 'block' : 'allow'})`);\n  if (topFile) summaryParts.push(`Most sensitive file: ${topFile.file}`);\n  if (topReasons.length) summaryParts.push(`Top reasons: ${topReasons.join('; ')}`);\n\n  const patterns = reasoning.matchedPatterns;\n  const incidents = reasoning.relevantIncidents;\n\n  const firstPattern = patterns[0];\n  const patternLine = firstPattern\n    ? `Pattern match: ${firstPattern.data.description}`\n    : 'No known risky patterns matched.';\n\n  const incidentLine = incidents[0]\n    ? `Relevant prior incident: ${incidents[0].data.description} (${incidents[0].data.severity})`\n    : 'No prior incidents linked to these files.';\n\n  const howBad = [\n    `Overall risk is ${reasoning.riskLevel}.`,\n    reasoning.shouldBlock ? 'This is likely to break things or violate policy if pushed without review.' : 'This is unlikely to cause major issues if you follow normal review/testing.',\n    incidentLine,\n  ].join(' ');\n\n  const whatToDo = [\n    reasoning.recommendation,\n    patterns.length ? `Double-check the pattern(s): ${patterns.slice(0, 2).map((p) => p.data.description).join(' | ')}.` : '',\n  ].filter(Boolean).join(' ');\n\n  return {\n    summary: summaryParts.join(' — '),\n    whatIFound: [patternLine, `Incidents considered: ${incidents.length}. Patterns considered: ${patterns.length}.`].join(' '),\n    howBad,\n    whatToDo,\n    original: reasoning,\n  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package/dist/chunk-JKEEQAG2.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/utils/progress.ts"],"sourcesContent":["/**\n * Progress Reporter for Trie Agent\n * \n * Provides real-time feedback to users as the agent works.\n * Uses console.error because MCP clients display stderr to users.\n */\n\n/**\n * Global interactive mode flag\n * When enabled, suppresses all console output (handled by InteractiveDashboard instead)\n */\nlet _interactiveMode = false;\n\n/**\n * Enable or disable interactive mode\n * When enabled, all console output from ProgressReporter and AgentProgressReporter is suppressed\n * \n * NOTE: This only sets the flag. 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string, line?: number): void {\n    this.issueCount++;\n    \n    // Track by severity\n    const current = this.issuesBySeverity.get(severity) || 0;\n    this.issuesBySeverity.set(severity, current + 1);\n\n    // Store critical and serious issues for detailed output\n    if (severity === 'critical') {\n      this.criticalIssues.push({\n        severity,\n        issue,\n        ...(file !== undefined ? { file } : {}),\n        ...(line !== undefined ? { line } : {}),\n      });\n      // Flush critical issues immediately\n      if (this.verbose && !_interactiveMode) {\n        this.flushCriticalAndSerious();\n      }\n    } else if (severity === 'serious') {\n      this.seriousIssues.push({\n        severity,\n        issue,\n        ...(file !== undefined ? { file } : {}),\n        ...(line !== undefined ? { line } : {}),\n      });\n    }\n\n    // Batch similar issues together for cleaner output\n    if (!this.verbose || _interactiveMode) return;\n\n    // Normalize issue 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package/dist/chunk-JYWGYUKX.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/context/graph.ts","../src/context/store.ts"],"sourcesContent":["import crypto from 'node:crypto';\nimport path from 'node:path';\n\nimport type { RiskLevel } from '../types/index.js';\nimport { ContextStore } from './store.js';\nimport type {\n  ChangeNode,\n  ChangeNodeData,\n  ContextSnapshot,\n  DecisionNode,\n  DecisionNodeData,\n  Edge,\n  EdgeDirection,\n  EdgeType,\n  FileNode,\n  FileNodeData,\n  FixNode,\n  FixNodeData,\n  GitHubIssueNode,\n  GitHubIssueNodeData,\n  IncidentNode,\n  IncidentNodeData,\n  IssueNode,\n  IssueNodeData,\n  LinearTicketNode,\n  LinearTicketNodeData,\n  Node,\n  NodeData,\n  NodeType,\n  PatternNode,\n  PatternNodeData,\n  PullRequestNode,\n  PullRequestNodeData\n} from './types.js';\n\nexport class ContextGraph {\n  private readonly store: ContextStore;\n  private readonly projectPath: string;\n\n  constructor(projectPath: string, dbPath?: string, store?: ContextStore) {\n    this.projectPath = projectPath;\n    this.store = store ?? new ContextStore(projectPath, dbPath);\n  }\n\n  get projectRoot(): string {\n    return this.projectPath;\n  }\n\n  async addNode(type: 'file', data: FileNodeData): Promise<FileNode>;\n  async addNode(type: 'change', data: ChangeNodeData): Promise<ChangeNode>;\n  async addNode(type: 'incident', data: IncidentNodeData): Promise<IncidentNode>;\n  async addNode(type: 'issue', data: IssueNodeData): Promise<IssueNode>;\n  async addNode(type: 'pattern', data: PatternNodeData): Promise<PatternNode>;\n  async addNode(type: 'fix', data: FixNodeData): Promise<FixNode>;\n  async addNode(type: 'decision', data: DecisionNodeData): Promise<DecisionNode>;\n  async addNode(type: 'linear-ticket', data: LinearTicketNodeData): Promise<LinearTicketNode>;\n  async addNode(type: 'pull-request', data: PullRequestNodeData): Promise<PullRequestNode>;\n  async addNode(type: 'github-issue', data: GitHubIssueNodeData): Promise<GitHubIssueNode>;\n  async addNode(type: NodeType, data: 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1\n  ): Promise<Edge> {\n    const edge: Edge = {\n      id: crypto.randomUUID(),\n      from_id: fromId,\n      to_id: toId,\n      type,\n      weight,\n      metadata,\n      created_at: new Date().toISOString()\n    };\n\n    this.store.addEdge(edge);\n    return edge;\n  }\n\n  async getEdges(nodeId: string, direction: EdgeDirection = 'both'): Promise<Edge[]> {\n    return this.store.getEdges(nodeId, direction);\n  }\n\n  async getIncidentsForFile(filePath: string): Promise<IncidentNode[]> {\n    const fileNode = this.findFileNode(filePath);\n    if (!fileNode) return [];\n\n    const incidents = new Map<string, IncidentNode>();\n\n    const affectEdges = this.store.getEdges(fileNode.id, 'in').filter((edge) => edge.type === 'affects');\n    for (const edge of affectEdges) {\n      const changeId = edge.from_id;\n      const leadEdges = this.store.getEdges(changeId, 'out').filter((e) => e.type === 'leadTo');\n      const causedByEdges = this.store.getEdges(changeId, 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ChangeNode[];\n    return nodes\n      .sort((a, b) => new Date(b.data.timestamp).getTime() - new Date(a.data.timestamp).getTime())\n      .slice(0, limit);\n  }\n\n  async calculateFileRisk(filePath: string): Promise<RiskLevel> {\n    const fileNode = this.findFileNode(filePath);\n    if (!fileNode) return 'low';\n\n    // Simple heuristic based on incidents and changes\n    const incidentScore = Math.min(fileNode.data.incidentCount * 2, 6);\n    const changeScore = Math.min(fileNode.data.changeCount, 4);\n    const baseScore = this.riskLevelToScore(fileNode.data.riskLevel);\n    const total = baseScore + incidentScore + changeScore;\n\n    if (total >= 10) return 'critical';\n    if (total >= 7) return 'high';\n    if (total >= 4) return 'medium';\n    return 'low';\n  }\n\n  async listNodes(): Promise<Node[]> {\n    return this.store.listNodes();\n  }\n\n  async listEdges(): Promise<Edge[]> {\n    return this.store.listEdges();\n  }\n\n  async deleteEdge(id: string): Promise<void> 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normalizePath(filePath: string): string {\n    return path.resolve(this.projectPath, filePath);\n  }\n\n  private riskLevelToScore(level: RiskLevel): number {\n    switch (level) {\n      case 'critical':\n        return 6;\n      case 'high':\n        return 4;\n      case 'medium':\n        return 2;\n      default:\n        return 0;\n    }\n  }\n\n  private isNewer(incoming: string, existing: string): boolean {\n    return new Date(incoming).getTime() >= new Date(existing).getTime();\n  }\n}\n","import Database, { type Database as DatabaseType } from 'better-sqlite3';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { getTrieDirectory } from '../utils/workspace.js';\n\nimport type { Edge, EdgeDirection, EdgeType, Node, NodeData, NodeType } from './types.js';\n\ntype NodeRow = {\n  id: string;\n  type: NodeType;\n  data: string;\n  created_at: string;\n  updated_at: string;\n};\n\ntype EdgeRow = {\n  id: string;\n  from_id: string;\n  to_id: string;\n  type: EdgeType;\n  weight: number;\n  metadata: string | null;\n  created_at: string;\n};\n\nexport class ContextStore {\n  private db: DatabaseType;\n  private readonly dbFilePath: string;\n\n  constructor(projectPath: string, dbFilePath?: string) {\n    this.dbFilePath = dbFilePath ?? path.join(getTrieDirectory(projectPath), 'context.db');\n    this.ensureDirectory();\n\n    this.db = new Database(this.dbFilePath);\n    this.configure();\n    this.prepareSchema();\n  }\n\n  get databasePath(): string {\n    return this.dbFilePath;\n  }\n\n  addNode(node: Node): Node {\n    const stmt = this.db.prepare(\n      `INSERT INTO nodes (id, type, data, created_at, updated_at)\n       VALUES (@id, @type, @data, @created_at, @updated_at)`\n    );\n\n    stmt.run({\n      id: node.id,\n      type: node.type,\n      data: JSON.stringify(node.data),\n      created_at: node.created_at,\n      updated_at: node.updated_at\n    });\n\n    return node;\n  }\n\n  upsertNode(node: Node): Node {\n    const stmt = this.db.prepare(\n      `INSERT INTO nodes (id, type, data, created_at, updated_at)\n       VALUES (@id, @type, @data, @created_at, @updated_at)\n       ON CONFLICT(id) DO UPDATE SET\n         type=excluded.type,\n         data=excluded.data,\n         updated_at=excluded.updated_at`\n    );\n\n    stmt.run({\n      id: node.id,\n      type: node.type,\n      data: JSON.stringify(node.data),\n      created_at: node.created_at,\n      updated_at: node.updated_at\n    });\n\n    return node;\n  }\n\n  getNode(id: string): Node | null {\n    const row = this.db.prepare('SELECT * FROM nodes WHERE id = ?').get(id) as NodeRow | undefined;\n    return row ? this.mapNodeRow(row) : null;\n  }\n\n  getNodeByType(type: NodeType, id: string): Node | null {\n    const row = this.db\n      .prepare('SELECT * FROM nodes WHERE id = ? AND type = ?')\n      .get(id, type) as NodeRow | undefined;\n    return row ? this.mapNodeRow(row) : null;\n  }\n\n  updateNode(id: string, updates: Partial<NodeData>, updatedAt: string): Node | null {\n    const existing = this.getNode(id);\n    if (!existing) {\n      return null;\n    }\n\n    const merged = {\n      ...existing,\n      data: { ...existing.data, ...updates },\n      updated_at: updatedAt\n    } as Node;\n\n    this.db\n      .prepare(\n        `UPDATE nodes SET data = @data, updated_at = @updated_at\n         WHERE id = @id`\n      )\n      .run({\n        id,\n        data: JSON.stringify(merged.data),\n        updated_at: merged.updated_at\n      });\n\n    return merged;\n  }\n\n  deleteNode(id: string): void {\n    const deleteEdges = this.db.prepare('DELETE FROM edges WHERE from_id = ? 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package/dist/chunk-KLMJKM63.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/utils/output-manager.ts"],"sourcesContent":["/**\n * OutputManager - Unified output abstraction for all UI modes\n * \n * Routes content to the appropriate renderer based on current mode:\n * - TUI: Routes to InteractiveDashboard\n * - Console: Routes to console.error with ANSI colors\n * - MCP: Accumulates for markdown response\n * - JSON: Accumulates for JSON response\n * - Silent: Discards output\n * \n * This solves the problem of skills suppressing content in interactive mode\n * by redirecting it to the dashboard instead.\n */\n\nimport type { Issue } from '../types/index.js';\nimport type { StreamingManager } from './streaming.js';\nimport { isInteractiveMode } from './progress.js';\nimport pc from 'picocolors';\n\n// Output content types\nexport type OutputContentType = \n  | 'banner'      // ASCII art banner from skills\n  | 'progress'    // Progress update\n  | 'issue'       // Issue found\n  | 'snippet'     // Code snippet with context\n  | 'cost'        // Cost estimate from Moneybags\n  | 'readiness'   // Production readiness score\n  | 'semantic'    // Semantic analysis (data flow, race conditions)\n  | 'attack'      // Attack surface analysis\n  | 'activity'    // Activity log message\n  | 'report'      // Full markdown report section\n  | 'log'         // Raw log message\n  | 'nudge'; 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description: string; file: string; line?: number }>;\n}\n\nexport interface AttackSurfaceContent {\n  totalEndpoints: number;\n  unprotected: number;\n  riskScore: number;\n  endpoints?: Array<{ path: string; method: string; auth: boolean; sensitive: boolean }>;\n}\n\nexport interface OutputContent {\n  type: OutputContentType;\n  content: any;\n  timestamp?: number;\n  metadata?: {\n    severity?: 'critical' | 'serious' | 'moderate' | 'low';\n    agent?: string;\n    file?: string;\n  };\n}\n\nexport type OutputMode = 'tui' | 'console' | 'mcp' | 'json' | 'silent';\n\n/**\n * Central output manager - singleton\n */\nclass OutputManagerImpl {\n  private mode: OutputMode = 'console';\n  private streamingManager?: StreamingManager;\n  private markdownBuffer: string[] = [];\n  private jsonBuffer: OutputContent[] = [];\n  private rawLogBuffer: Array<{ time: string; level: string; message: string }> = [];\n  \n  // Callbacks for TUI integration (explicitly allow undefined for exactOptionalPropertyTypes)\n  private onBanner: ((content: BannerContent) => void) | undefined = undefined;\n  private onSnippet: ((content: SnippetContent) => void) | undefined = undefined;\n  private onCost: ((content: CostContent) => void) | undefined = undefined;\n  private onReadiness: ((content: ReadinessContent) => void) | undefined = undefined;\n  private onSemantic: ((content: SemanticContent) => void) | undefined = undefined;\n  private onAttack: ((content: AttackSurfaceContent) => void) | undefined = undefined;\n  private onActivity: ((message: string) => void) | undefined = undefined;\n  private onLog: ((level: string, message: string) => void) | undefined = undefined;\n  private onNudge: ((content: NudgeContent) => void) | undefined = undefined;\n\n  /**\n   * Set the output mode\n   */\n  setMode(mode: OutputMode): void {\n    this.mode = mode;\n  }\n\n  /**\n   * Get current output mode\n   */\n  getMode(): OutputMode {\n    return this.mode;\n  }\n\n  /**\n   * Set streaming manager for TUI updates\n   */\n  setStreamingManager(manager: StreamingManager): void {\n    this.streamingManager = manager;\n  }\n\n  /**\n   * Register TUI callbacks for rich content\n   */\n  registerTUICallbacks(callbacks: {\n    onBanner?: (content: BannerContent) => void;\n    onSnippet?: (content: SnippetContent) => void;\n    onCost?: (content: CostContent) => void;\n    onReadiness?: (content: ReadinessContent) => void;\n    onSemantic?: (content: SemanticContent) => void;\n    onAttack?: (content: AttackSurfaceContent) => void;\n    onActivity?: (message: string) => void;\n    onLog?: (level: string, message: string) => void;\n    onNudge?: (content: NudgeContent) => void;\n  }): void {\n    this.onBanner = callbacks.onBanner;\n    this.onSnippet = callbacks.onSnippet;\n    this.onCost = callbacks.onCost;\n    this.onReadiness = callbacks.onReadiness;\n    this.onSemantic = callbacks.onSemantic;\n    this.onAttack = callbacks.onAttack;\n    this.onActivity = callbacks.onActivity;\n    this.onLog = callbacks.onLog;\n    this.onNudge = callbacks.onNudge;\n  }\n\n  /**\n   * Clear TUI callbacks (when dashboard stops)\n   */\n  clearTUICallbacks(): void {\n    this.onBanner = undefined;\n    this.onSnippet = undefined;\n    this.onCost = undefined;\n    this.onReadiness = undefined;\n    this.onSemantic = undefined;\n    this.onAttack = undefined;\n    this.onActivity = undefined;\n    this.onLog = undefined;\n    this.onNudge = undefined;\n  }\n\n  /**\n   * Emit content - routes to appropriate handler based on mode\n   */\n  emit(content: OutputContent): void {\n    content.timestamp = content.timestamp ?? Date.now();\n    \n    switch (this.mode) {\n      case 'tui':\n        this.routeToTUI(content);\n        break;\n      case 'console':\n        this.routeToConsole(content);\n        break;\n      case 'mcp':\n        this.routeToMarkdown(content);\n        break;\n      case 'json':\n        this.routeToJson(content);\n        break;\n      case 'silent':\n        // Discard\n        break;\n    }\n    \n    // Always capture in raw log buffer\n    this.captureRawLog(content);\n  }\n\n  /**\n   * Route content to TUI (dashboard callbacks)\n   */\n  private routeToTUI(content: OutputContent): void {\n    switch (content.type) {\n      case 'banner':\n        this.onBanner?.(content.content as BannerContent);\n        break;\n      case 'snippet':\n        this.onSnippet?.(content.content as SnippetContent);\n        break;\n      case 'cost':\n        this.onCost?.(content.content as CostContent);\n        break;\n      case 'readiness':\n        this.onReadiness?.(content.content as ReadinessContent);\n        break;\n      case 'semantic':\n        this.onSemantic?.(content.content as SemanticContent);\n        break;\n      case 'attack':\n        this.onAttack?.(content.content as AttackSurfaceContent);\n        break;\n      case 'activity':\n        this.onActivity?.(content.content as string);\n        break;\n      case 'log':\n        const level = content.metadata?.severity ?? 'info';\n        this.onLog?.(level, content.content as string);\n        break;\n      case 'issue':\n        // Issues go through streaming manager\n        this.streamingManager?.reportIssue(content.content as Issue);\n        break;\n      case 'progress':\n        // Progress goes through streaming manager\n        break;\n      case 'report':\n        // Reports are captured but not directly displayed\n        break;\n      case 'nudge':\n        // Proactive notifications go to dashboard\n        this.onNudge?.(content.content as NudgeContent);\n        break;\n    }\n  }\n\n  /**\n   * Route content to console (ANSI formatted)\n   */\n  private routeToConsole(content: OutputContent): void {\n    switch (content.type) {\n      case 'banner':\n        const banner = content.content as BannerContent;\n        console.error('\\n' + '='.repeat(60));\n        console.error(banner.art);\n        if (banner.version) {\n          console.error(`        ${banner.skill} v${banner.version}`);\n        }\n        console.error('');\n        if (banner.quote) {\n          console.error(`   \"${banner.quote}\"`);\n        }\n        console.error('='.repeat(60) + '\\n');\n        break;\n        \n      case 'snippet':\n        const snippet = content.content as SnippetContent;\n        console.error(`\\n${pc.dim('File:')} ${snippet.file}`);\n        for (let i = 0; i < snippet.lines.length; i++) {\n          const lineNum = snippet.startLine + i;\n          const isHighlight = lineNum === snippet.highlightLine;\n          const prefix = isHighlight ? pc.red('→') : ' ';\n          const lineNumStr = pc.dim(lineNum.toString().padStart(4));\n          const line = isHighlight ? pc.yellow(snippet.lines[i]) : snippet.lines[i];\n          console.error(`${prefix} ${lineNumStr} | ${line}`);\n        }\n        console.error('');\n        break;\n        \n      case 'cost':\n        const cost = content.content as CostContent;\n        console.error('\\n' + pc.cyan('[$] Cost Estimate:'));\n        console.error(`   Fix now: ${pc.green(this.formatCurrency(cost.fixNowCost))}`);\n        console.error(`   If production: ${pc.red(this.formatCurrency(cost.productionCost))}`);\n        console.error(`   Savings: ${pc.yellow(this.formatCurrency(cost.savings))}`);\n        console.error('');\n        break;\n        \n      case 'readiness':\n        const readiness = content.content as ReadinessContent;\n        const statusColor = readiness.status === 'ready' ? pc.green : \n                           readiness.status === 'caution' ? pc.yellow : pc.red;\n        console.error('\\n' + pc.cyan('[%] Production Readiness:'));\n        console.error(`   Score: ${statusColor(readiness.score + '/100')}`);\n        console.error(`   Requirements: ${readiness.requirementsMet}/${readiness.total}`);\n        console.error(`   Status: ${statusColor(readiness.status.toUpperCase())}`);\n        console.error('');\n        break;\n        \n      case 'semantic':\n        const semantic = content.content as SemanticContent;\n        console.error('\\n' + pc.cyan('[?] Semantic Analysis:'));\n        if (semantic.dataFlowIssues > 0) {\n          console.error(`   ${pc.red('[!]')} ${semantic.dataFlowIssues} data flow vulnerabilities`);\n        }\n        if (semantic.raceConditions > 0) {\n          console.error(`   ${pc.yellow('[~]')} ${semantic.raceConditions} race conditions`);\n        }\n        if (semantic.authIssues > 0) {\n          console.error(`   ${pc.red('[!]')} ${semantic.authIssues} authentication issues`);\n        }\n        console.error('');\n        break;\n        \n      case 'attack':\n        const attack = content.content as AttackSurfaceContent;\n        console.error('\\n' + pc.cyan('[>] Attack Surface:'));\n        console.error(`   Endpoints: ${attack.totalEndpoints}`);\n        if (attack.unprotected > 0) {\n          console.error(`   ${pc.red('Unprotected:')} ${attack.unprotected}`);\n        }\n        console.error(`   Risk Score: ${attack.riskScore}/100`);\n        console.error('');\n        break;\n        \n      case 'activity':\n        console.error(pc.dim(`[${this.formatTime()}]`) + ` ${content.content}`);\n        break;\n        \n      case 'log':\n        // For log content, severity can be any string (info, warn, error, debug)\n        const logLevel = String(content.metadata?.severity ?? 'info');\n        const levelColor = logLevel === 'error' || logLevel === 'critical' ? pc.red :\n                          logLevel === 'warn' || logLevel === 'serious' ? pc.yellow :\n                          logLevel === 'info' || logLevel === 'moderate' ? pc.blue : pc.dim;\n        console.error(levelColor(`[${logLevel.toUpperCase()}]`) + ` ${content.content}`);\n        break;\n        \n      case 'issue':\n        const issue = content.content as Issue;\n        const sevColor = issue.severity === 'critical' ? pc.red :\n                        issue.severity === 'serious' ? pc.yellow :\n                        issue.severity === 'moderate' ? pc.blue : pc.dim;\n        console.error(`${sevColor(`[${issue.severity.toUpperCase()}]`)} ${issue.issue}`);\n        console.error(`   ${pc.dim('File:')} ${issue.file}:${issue.line ?? '?'}`);\n        break;\n        \n      case 'report':\n        // Reports are printed as-is (already formatted)\n        console.error(content.content);\n        break;\n        \n      case 'nudge':\n        // Proactive notifications in console mode\n        const nudge = content.content as NudgeContent;\n        const nudgeColor = nudge.severity === 'critical' ? pc.red :\n                          nudge.severity === 'warning' ? pc.yellow : pc.cyan;\n        const nudgeIcon = nudge.severity === 'critical' ? '[!!!]' :\n                         nudge.severity === 'warning' ? '[!]' : '[>]';\n        console.error('');\n        console.error(nudgeColor('━'.repeat(60)));\n        console.error(nudgeColor(`${nudgeIcon}  TRIE AGENT SAYS:`));\n        console.error(nudgeColor('━'.repeat(60)));\n        console.error('');\n        console.error(`   ${pc.bold(nudge.message)}`);\n        if (nudge.file) {\n          console.error(`   ${pc.dim('File:')} ${nudge.file}`);\n        }\n        console.error('');\n        console.error(nudgeColor('━'.repeat(60)));\n        console.error('');\n        break;\n    }\n  }\n\n  /**\n   * Route content to markdown buffer\n   */\n  private routeToMarkdown(content: OutputContent): void {\n    switch (content.type) {\n      case 'banner':\n        const banner = content.content as BannerContent;\n        this.markdownBuffer.push(`## ${banner.skill}\\n`);\n        if (banner.quote) {\n          this.markdownBuffer.push(`> ${banner.quote}\\n`);\n        }\n        break;\n        \n      case 'snippet':\n        const snippet = content.content as SnippetContent;\n        this.markdownBuffer.push(`\\n**File:** \\`${snippet.file}\\`\\n`);\n        this.markdownBuffer.push('```\\n');\n        for (let i = 0; i < snippet.lines.length; i++) {\n          const lineNum = snippet.startLine + i;\n          const prefix = lineNum === snippet.highlightLine ? '→' : ' ';\n          this.markdownBuffer.push(`${prefix} ${lineNum.toString().padStart(4)} | ${snippet.lines[i]}\\n`);\n        }\n        this.markdownBuffer.push('```\\n');\n        break;\n        \n      case 'cost':\n        const cost = content.content as CostContent;\n        this.markdownBuffer.push(`\\n### Cost Estimate\\n`);\n        this.markdownBuffer.push(`- Fix now: ${this.formatCurrency(cost.fixNowCost)}\\n`);\n        this.markdownBuffer.push(`- If production: ${this.formatCurrency(cost.productionCost)}\\n`);\n        this.markdownBuffer.push(`- Savings: ${this.formatCurrency(cost.savings)}\\n`);\n        break;\n        \n      case 'readiness':\n        const readiness = content.content as ReadinessContent;\n        this.markdownBuffer.push(`\\n### Production Readiness\\n`);\n        this.markdownBuffer.push(`- Score: ${readiness.score}/100\\n`);\n        this.markdownBuffer.push(`- Requirements: ${readiness.requirementsMet}/${readiness.total}\\n`);\n        this.markdownBuffer.push(`- Status: **${readiness.status.toUpperCase()}**\\n`);\n        break;\n        \n      case 'semantic':\n        const semantic = content.content as SemanticContent;\n        this.markdownBuffer.push(`\\n### Semantic Analysis\\n`);\n        if (semantic.dataFlowIssues > 0) {\n          this.markdownBuffer.push(`- [CRITICAL] ${semantic.dataFlowIssues} data flow vulnerabilities\\n`);\n        }\n        if (semantic.raceConditions > 0) {\n          this.markdownBuffer.push(`- [WARN] ${semantic.raceConditions} race conditions\\n`);\n        }\n        if (semantic.authIssues > 0) {\n          this.markdownBuffer.push(`- [CRITICAL] ${semantic.authIssues} authentication issues\\n`);\n        }\n        break;\n        \n      case 'attack':\n        const attack = content.content as AttackSurfaceContent;\n        this.markdownBuffer.push(`\\n### Attack Surface\\n`);\n        this.markdownBuffer.push(`- Endpoints: ${attack.totalEndpoints}\\n`);\n        this.markdownBuffer.push(`- Unprotected: ${attack.unprotected}\\n`);\n        this.markdownBuffer.push(`- Risk Score: ${attack.riskScore}/100\\n`);\n        break;\n        \n      case 'report':\n        this.markdownBuffer.push(content.content);\n        break;\n        \n      default:\n        // Other types are captured in JSON buffer\n        this.jsonBuffer.push(content);\n    }\n  }\n\n  /**\n   * Route content to JSON buffer\n   */\n  private routeToJson(content: OutputContent): void {\n    this.jsonBuffer.push(content);\n  }\n\n  /**\n   * Capture content in raw log buffer\n   */\n  private captureRawLog(content: OutputContent): void {\n    const time = this.formatTime(content.timestamp);\n    const level = content.metadata?.severity ?? content.type;\n    let message = '';\n    \n    switch (content.type) {\n      case 'banner':\n        message = `[BANNER] ${(content.content as BannerContent).skill}`;\n        break;\n      case 'activity':\n      case 'log':\n        message = content.content as string;\n        break;\n      case 'issue':\n        const issue = content.content as Issue;\n        message = `[${issue.severity.toUpperCase()}] ${issue.issue}`;\n        break;\n      default:\n        message = `[${content.type.toUpperCase()}] Content received`;\n    }\n    \n    this.rawLogBuffer.push({ time, level, message });\n    \n    // Keep buffer size reasonable\n    if (this.rawLogBuffer.length > 500) {\n      this.rawLogBuffer = this.rawLogBuffer.slice(-500);\n    }\n  }\n\n  /**\n   * Get raw log buffer for display\n   */\n  getRawLog(): Array<{ time: string; level: string; message: string }> {\n    return [...this.rawLogBuffer];\n  }\n\n  /**\n   * Get accumulated markdown output\n   */\n  getMarkdown(): string {\n    return this.markdownBuffer.join('\\n');\n  }\n\n  /**\n   * Get accumulated JSON output\n   */\n  getJson(): OutputContent[] {\n    return [...this.jsonBuffer];\n  }\n\n  /**\n   * Clear buffers\n   */\n  clearBuffers(): void {\n    this.markdownBuffer = [];\n    this.jsonBuffer = [];\n  }\n\n  // ============================================\n  // Convenience methods for common output types\n  // ============================================\n\n  /**\n   * Display a skill banner\n   */\n  banner(skill: string, art: string, options?: { quote?: string; version?: string }): void {\n    this.emit({\n      type: 'banner',\n      content: { skill, art, quote: options?.quote, version: options?.version } as BannerContent,\n      metadata: { agent: skill }\n    });\n  }\n\n  /**\n   * Display a code snippet\n   */\n  snippet(file: string, lines: string[], startLine: number, highlightLine?: number): void {\n    this.emit({\n      type: 'snippet',\n      content: { file, lines, startLine, highlightLine } as SnippetContent,\n      metadata: { file }\n    });\n  }\n\n  /**\n   * Display cost estimate\n   */\n  cost(fixNowCost: number, productionCost: number, savings: number, perIssue?: Array<{ issue: string; cost: number }>): void {\n    this.emit({\n      type: 'cost',\n      content: { fixNowCost, productionCost, savings, perIssue } as CostContent\n    });\n  }\n\n  /**\n   * Display production readiness\n   */\n  readiness(\n    score: number, \n    requirementsMet: number, \n    total: number, \n    status: 'ready' | 'caution' | 'not-ready',\n    requirements?: Array<{ name: string; met: boolean }>\n  ): void {\n    const content: ReadinessContent = { score, requirementsMet, total, status };\n    if (requirements) {\n      content.requirements = requirements;\n    }\n    this.emit({\n      type: 'readiness',\n      content\n    });\n  }\n\n  /**\n   * Display semantic analysis results\n   */\n  semantic(dataFlowIssues: number, raceConditions: number, authIssues: number): void {\n    this.emit({\n      type: 'semantic',\n      content: { dataFlowIssues, raceConditions, authIssues } as SemanticContent\n    });\n  }\n\n  /**\n   * Display attack surface analysis\n   */\n  attack(totalEndpoints: number, unprotected: number, riskScore: number): void {\n    this.emit({\n      type: 'attack',\n      content: { totalEndpoints, unprotected, riskScore } as AttackSurfaceContent\n    });\n  }\n\n  /**\n   * Log an activity message\n   */\n  activity(message: string): void {\n    this.emit({\n      type: 'activity',\n      content: message\n    });\n  }\n\n  /**\n   * Log a message at specified level\n   */\n  log(level: 'info' | 'warn' | 'error' | 'debug', message: string): void {\n    this.emit({\n      type: 'log',\n      content: message,\n      metadata: { severity: level as any }\n    });\n  }\n\n  /**\n   * Log info message\n   */\n  info(message: string): void {\n    this.log('info', message);\n  }\n\n  /**\n   * Log warning message\n   */\n  warn(message: string): void {\n    this.log('warn', message);\n  }\n\n  /**\n   * Log error message\n   */\n  error(message: string): void {\n    this.log('error', message);\n  }\n\n  /**\n   * Log debug message\n   */\n  debug(message: string): void {\n    this.log('debug', message);\n  }\n\n  /**\n   * Report an issue\n   */\n  issue(issue: Issue): void {\n    this.emit({\n      type: 'issue',\n      content: issue,\n      metadata: { severity: issue.severity, agent: issue.agent, file: issue.file }\n    });\n  }\n\n  /**\n   * Add a report section\n   */\n  report(content: string): void {\n    this.emit({\n      type: 'report',\n      content\n    });\n  }\n\n  /**\n   * Send a proactive notification/nudge to the user\n   * This creates a prominent popup in TUI mode or a boxed message in console mode\n   */\n  nudge(message: string, severity: 'critical' | 'warning' | 'info' = 'warning', file?: string, autoHideMs?: number): void {\n    const metadata: { severity?: 'critical' | 'serious' | 'moderate' | 'low'; agent?: string; file?: string } = {};\n    // Map nudge severity to issue severity\n    if (severity === 'critical') metadata.severity = 'critical';\n    else if (severity === 'warning') metadata.severity = 'moderate';\n    else metadata.severity = 'low';\n    if (file !== undefined) metadata.file = file;\n    this.emit({\n      type: 'nudge',\n      content: { message, severity, file, autoHideMs } as NudgeContent,\n      metadata,\n    });\n  }\n\n  // ============================================\n  // Helpers\n  // ============================================\n\n  private formatCurrency(amount: number): string {\n    if (amount >= 1000000) return `$${(amount / 1000000).toFixed(2)}M`;\n    if (amount >= 1000) return `$${(amount / 1000).toFixed(1)}k`;\n    return `$${amount}`;\n  }\n\n  private formatTime(timestamp?: number): string {\n    const date = timestamp ? new Date(timestamp) : new Date();\n    return date.toLocaleTimeString('en-US', { hour12: false, hour: '2-digit', minute: '2-digit', second: '2-digit' });\n  }\n}\n\n// Singleton instance\nlet instance: OutputManagerImpl | null = null;\n\n/**\n * Get the OutputManager instance\n */\nexport function getOutputManager(): OutputManagerImpl {\n  if (!instance) {\n    instance = new OutputManagerImpl();\n    \n    // Auto-detect mode based on interactive mode flag\n    if (isInteractiveMode()) {\n      instance.setMode('tui');\n    }\n  }\n  return instance;\n}\n\n/**\n * Convenience function - shorthand for getOutputManager()\n */\nexport function output(): OutputManagerImpl {\n  return getOutputManager();\n}\n\n/**\n * Reset the OutputManager (for testing)\n */\nexport function resetOutputManager(): void {\n  instance = 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package/dist/chunk-XUGUKSKO.js.map

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-{"version":3,"sources":["../src/storage/tiered-storage.ts"],"sourcesContent":["/**\n * Tiered Storage System\n * \n * Three-tier architecture for context management:\n * - HOT:  In-memory, current session data\n * - WARM: SQLite DB, queryable governance/facts/blockers\n * - COLD: Full history, indexed but not actively queried\n * \n * This prevents context pollution by keeping agents focused on\n * relevant signal rather than dumping everything into context.\n */\n\nimport { writeFile, mkdir } from 'fs/promises';\nimport { join } from 'path';\nimport { createHash } from 'node:crypto';\nimport Database from 'better-sqlite3';\nimport type {\n  Governance,\n  Blocker,\n  ExtractedSignal,\n  ContextQuery,\n  Nudge,\n  Gotcha,\n} from '../types/signal.js';\nimport { getTrieDirectory } from '../utils/workspace.js';\n\nexport class TieredStorage {\n  private workDir: string;\n  private hotCache: Map<string, any> = new Map();\n  private warmDb: Database.Database | null = null;\n\n  constructor(workDir: string) {\n    this.workDir = workDir;\n  }\n\n  /**\n   * Initialize storage directories and database\n   */\n  async initialize(): Promise<void> {\n    const trieDir = getTrieDirectory(this.workDir);\n    \n    // Create directories\n    await mkdir(join(trieDir, 'hot'), { recursive: true });\n    await mkdir(join(trieDir, 'warm'), { recursive: true });\n    await mkdir(join(trieDir, 'cold'), { recursive: true });\n\n    // Initialize warm database\n    const dbPath = join(trieDir, 'warm', 'governance.db');\n    this.warmDb = new Database(dbPath);\n    \n    // Create tables\n    this.warmDb.exec(`\n      CREATE TABLE IF NOT EXISTS governance (\n        id TEXT PRIMARY KEY,\n        decision TEXT NOT NULL,\n        context TEXT NOT NULL,\n        reasoning TEXT,\n        timestamp TEXT NOT NULL,\n        who TEXT,\n        files TEXT NOT NULL, -- JSON array\n        tags TEXT NOT NULL, -- JSON array\n        expandedTags TEXT, -- JSON array (with synonyms)\n        relatedTo TEXT, -- JSON array\n        tradeoffs TEXT, -- JSON array\n        status TEXT NOT NULL,\n        supersededBy TEXT,\n        hash TEXT, -- SHA-256 fingerprint (first 16 hex chars)\n        dependencies TEXT, -- JSON array (npm packages, services)\n        codebaseArea TEXT, -- JSON array (frontend, backend, auth, etc.)\n        domain TEXT, -- JSON array (payments, compliance, etc.)\n        lastAccessed TEXT NOT NULL,\n        accessCount INTEGER DEFAULT 0\n      );\n\n      CREATE TABLE IF NOT EXISTS facts (\n        id TEXT PRIMARY KEY,\n        fact TEXT NOT NULL,\n        source TEXT NOT NULL,\n        timestamp TEXT NOT NULL,\n        tags TEXT NOT NULL, -- JSON array\n        expandedTags TEXT, -- JSON array (with synonyms)\n        relatedGovernance TEXT, -- JSON array\n        confidence REAL NOT NULL,\n        lastAccessed TEXT NOT NULL,\n        accessCount INTEGER DEFAULT 0\n      );\n\n      CREATE TABLE IF NOT EXISTS blockers (\n        id TEXT PRIMARY KEY,\n        blocker TEXT NOT NULL,\n        impact TEXT NOT NULL,\n        affectedAreas TEXT NOT NULL, -- JSON array\n        timestamp TEXT NOT NULL,\n        resolvedAt TEXT,\n        resolution TEXT,\n        tags TEXT NOT NULL, -- JSON array\n        expandedTags TEXT, -- JSON array (with synonyms)\n        lastAccessed TEXT NOT NULL,\n        accessCount INTEGER DEFAULT 0\n      );\n\n      CREATE TABLE IF NOT EXISTS questions (\n        id TEXT PRIMARY KEY,\n        question TEXT NOT NULL,\n        context TEXT NOT NULL,\n        timestamp TEXT NOT NULL,\n        answeredAt TEXT,\n        answer TEXT,\n        relatedGovernance TEXT, -- JSON array\n        tags TEXT NOT NULL, -- JSON array\n        expandedTags TEXT, -- JSON array (with synonyms)\n        lastAccessed TEXT NOT NULL,\n        accessCount INTEGER DEFAULT 0\n      );\n\n      CREATE TABLE IF NOT EXISTS nudges (\n        id TEXT PRIMARY KEY,\n        message TEXT NOT NULL,\n        severity TEXT NOT NULL, -- 'critical', 'high', 'warning', 'info'\n        file TEXT,\n        category TEXT, -- 'quality', 'security', 'performance', etc.\n        goalId TEXT, -- Related goal ID if this is a goal violation\n        timestamp TEXT NOT NULL,\n        resolved BOOLEAN NOT NULL DEFAULT 0,\n        resolvedAt TEXT,\n        resolution TEXT, -- How it was resolved: 'dismissed', 'fixed', 'auto-fixed'\n        dismissed BOOLEAN NOT NULL DEFAULT 0,\n        priority INTEGER DEFAULT 5, -- 1-10 priority score\n        suggestedAction TEXT,\n        relatedIssues TEXT, -- JSON array\n        metadata TEXT -- JSON object for additional data\n      );\n\n      CREATE TABLE IF NOT EXISTS gotchas (\n        id TEXT PRIMARY KEY,\n        message TEXT NOT NULL,\n        confidence REAL NOT NULL, -- 0-1 confidence score\n        riskLevel TEXT NOT NULL, -- 'low', 'medium', 'high', 'critical'\n        recommendation TEXT NOT NULL,\n        file TEXT,\n        timestamp TEXT NOT NULL,\n        precedentId TEXT, -- ID of related historical incident/governance record\n        tags TEXT NOT NULL, -- JSON array\n        evidence TEXT NOT NULL, -- JSON object with pastIncidents, matchingPatterns, relatedTickets\n        resolved BOOLEAN NOT NULL DEFAULT 0,\n        resolvedAt TEXT,\n        resolution TEXT -- 'confirmed', 'false-positive', 'dismissed'\n      );\n\n      CREATE INDEX IF NOT EXISTS idx_governance_tags ON governance(tags);\n      CREATE INDEX IF NOT EXISTS idx_governance_expanded ON governance(expandedTags);\n      CREATE INDEX IF NOT EXISTS idx_governance_timestamp ON governance(timestamp);\n      CREATE INDEX IF NOT EXISTS idx_governance_status ON governance(status);\n      CREATE INDEX IF NOT EXISTS idx_governance_area ON governance(codebaseArea);\n      CREATE INDEX IF NOT EXISTS idx_governance_domain ON governance(domain);\n      CREATE INDEX IF NOT EXISTS idx_facts_tags ON facts(tags);\n      CREATE INDEX IF NOT EXISTS idx_facts_expanded ON facts(expandedTags);\n      CREATE INDEX IF NOT EXISTS idx_blockers_impact ON blockers(impact);\n      CREATE INDEX IF NOT EXISTS idx_blockers_resolved ON blockers(resolvedAt);\n      CREATE INDEX IF NOT EXISTS idx_nudges_timestamp ON nudges(timestamp);\n      CREATE INDEX IF NOT EXISTS idx_nudges_resolved ON nudges(resolved);\n      CREATE INDEX IF NOT EXISTS idx_nudges_severity ON nudges(severity);\n      CREATE INDEX IF NOT EXISTS idx_nudges_file ON nudges(file);\n      CREATE INDEX IF NOT EXISTS idx_gotchas_timestamp ON gotchas(timestamp);\n      CREATE INDEX IF NOT EXISTS idx_gotchas_resolved ON gotchas(resolved);\n      CREATE INDEX IF NOT EXISTS idx_gotchas_riskLevel ON gotchas(riskLevel);\n      CREATE INDEX IF NOT EXISTS idx_gotchas_file ON gotchas(file);\n      CREATE INDEX IF NOT EXISTS idx_gotchas_tags ON gotchas(tags);\n    `);\n  }\n\n  /**\n   * Store extracted signal with enriched metadata in warm storage\n   */\n  async storeSignal(signal: ExtractedSignal, metadata?: {\n    expandedTags?: string[];\n    dependencies?: string[];\n    codebaseArea?: string[];\n    domain?: string[];\n  }): Promise<void> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const now = new Date().toISOString();\n    \n    // Log what we're storing for debugging\n    const totalSignals = signal.governance.length + signal.facts.length + \n                         signal.blockers.length + signal.questions.length;\n    if (totalSignals > 0) {\n      console.debug(`[Storage] Storing ${totalSignals} signals: ${signal.governance.length}g, ${signal.facts.length}f, ${signal.blockers.length}b, ${signal.questions.length}q`);\n    }\n\n    // Store governance records\n    const governanceStmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO governance \n      (id, decision, context, reasoning, timestamp, who, files, tags, expandedTags, relatedTo, tradeoffs, status, supersededBy, hash, dependencies, codebaseArea, domain, lastAccessed, accessCount)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 0)\n    `);\n\n    const governanceRecords = signal.governance;\n    for (const gov of governanceRecords) {\n      const hash = gov.hash || createHash('sha256')\n        .update(`${gov.decision}|${gov.context}|${gov.when}`)\n        .digest('hex')\n        .slice(0, 16);\n      governanceStmt.run(\n        gov.id,\n        gov.decision,\n        gov.context,\n        gov.reasoning || null,\n        gov.when,\n        gov.who || null,\n        JSON.stringify(gov.files),\n        JSON.stringify(gov.tags),\n        JSON.stringify(metadata?.expandedTags || []),\n        JSON.stringify(gov.relatedTo || []),\n        JSON.stringify(gov.tradeoffs || []),\n        gov.status,\n        gov.supersededBy || null,\n        hash,\n        JSON.stringify(metadata?.dependencies || []),\n        JSON.stringify(metadata?.codebaseArea || []),\n        JSON.stringify(metadata?.domain || []),\n        now\n      );\n    }\n\n    // Store facts\n    const factStmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO facts\n      (id, fact, source, timestamp, tags, expandedTags, relatedGovernance, confidence, lastAccessed, accessCount)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, 0)\n    `);\n\n    for (const fact of signal.facts) {\n      factStmt.run(\n        fact.id,\n        fact.fact,\n        fact.source,\n        fact.when,\n        JSON.stringify(fact.tags),\n        JSON.stringify(metadata?.expandedTags || []),\n        JSON.stringify(fact.relatedGovernance || []),\n        fact.confidence,\n        now\n      );\n    }\n\n    // Store blockers\n    const blockerStmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO blockers\n      (id, blocker, impact, affectedAreas, timestamp, resolvedAt, resolution, tags, expandedTags, lastAccessed, accessCount)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 0)\n    `);\n\n    for (const blocker of signal.blockers) {\n      blockerStmt.run(\n        blocker.id,\n        blocker.blocker,\n        blocker.impact,\n        JSON.stringify(blocker.affectedAreas),\n        blocker.when,\n        blocker.resolvedAt || null,\n        blocker.resolution || null,\n        JSON.stringify(blocker.tags),\n        JSON.stringify(metadata?.expandedTags || []),\n        now\n      );\n    }\n\n    // Store questions\n    const questionStmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO questions\n      (id, question, context, timestamp, answeredAt, answer, relatedGovernance, tags, expandedTags, lastAccessed, accessCount)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 0)\n    `);\n\n    for (const q of signal.questions) {\n      questionStmt.run(\n        q.id,\n        q.question,\n        q.context,\n        q.when,\n        q.answeredAt || null,\n        q.answer || null,\n        JSON.stringify(q.relatedGovernance || []),\n        JSON.stringify(q.tags),\n        JSON.stringify(metadata?.expandedTags || []),\n        now\n      );\n    }\n\n    // Store gotchas if present\n    if (signal.gotchas && signal.gotchas.length > 0) {\n      const gotchaStmt = this.warmDb.prepare(`\n        INSERT OR REPLACE INTO gotchas\n        (id, message, confidence, riskLevel, recommendation, file, timestamp, precedentId, tags, evidence, resolved, resolvedAt, resolution)\n        VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n      `);\n      for (const g of signal.gotchas) {\n        gotchaStmt.run(\n          g.id,\n          g.message,\n          g.confidence,\n          g.riskLevel,\n          g.recommendation,\n          g.file || null,\n          g.timestamp,\n          g.precedentId || null,\n          JSON.stringify(g.tags || []),\n          JSON.stringify(g.evidence || { pastIncidents: [], matchingPatterns: [], relatedTickets: [] }),\n          g.resolved ? 1 : 0,\n          g.resolvedAt || null,\n          g.resolution || null\n        );\n      }\n    }\n    \n    // Log successful storage\n    const storedCount = signal.governance.length + signal.facts.length + \n                        signal.blockers.length + signal.questions.length +\n                        (signal.gotchas?.length || 0);\n    if (storedCount > 0) {\n      console.debug(`[Storage] ✓ Successfully stored ${storedCount} signals to governance.db`);\n    }\n  }\n\n  /**\n   * Query governance records from warm storage with expanded tag matching\n   */\n  async queryGovernance(query: ContextQuery): Promise<Governance[]> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    let sql = 'SELECT * FROM governance WHERE status = ?';\n    const params: any[] = ['active'];\n\n    // Add filters - search both tags and expandedTags for broader matching\n    if (query.tags && query.tags.length > 0) {\n      sql += ' AND (' + query.tags.map(() => '(tags LIKE ? OR expandedTags LIKE ?)').join(' OR ') + ')';\n      for (const tag of query.tags) {\n        params.push(`%\"${tag}\"%`, `%\"${tag}\"%`);\n      }\n    }\n\n    // Filter by codebase area if specified\n    if (query.filters?.codebaseArea) {\n      sql += ' AND codebaseArea LIKE ?';\n      params.push(`%\"${query.filters.codebaseArea}\"%`);\n    }\n\n    // Filter by domain if specified\n    if (query.filters?.domain) {\n      sql += ' AND domain LIKE ?';\n      params.push(`%\"${query.filters.domain}\"%`);\n    }\n\n    if (query.timeWindow) {\n      if (query.timeWindow.start) {\n        sql += ' AND timestamp >= ?';\n        params.push(query.timeWindow.start);\n      }\n      if (query.timeWindow.end) {\n        sql += ' AND timestamp <= ?';\n        params.push(query.timeWindow.end);\n      }\n    }\n\n    sql += ' ORDER BY timestamp DESC';\n\n    if (query.limit) {\n      sql += ' LIMIT ?';\n      params.push(query.limit);\n    }\n\n    const rows = this.warmDb.prepare(sql).all(...params) as any[];\n\n    return rows.map(row => ({\n      id: row.id,\n      decision: row.decision,\n      context: row.context,\n      reasoning: row.reasoning,\n      when: row.when,\n      who: row.who,\n      files: JSON.parse(row.files),\n      tags: JSON.parse(row.tags),\n      relatedTo: JSON.parse(row.relatedTo || '[]'),\n      tradeoffs: JSON.parse(row.tradeoffs || '[]'),\n      status: row.status,\n      supersededBy: row.supersededBy,\n      hash: row.hash || undefined,\n    }));\n  }\n\n  /**\n   * Query blockers from warm storage with expanded tag matching\n   */\n  async queryBlockers(query: ContextQuery): Promise<Blocker[]> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    let sql = 'SELECT * FROM blockers WHERE resolvedAt IS NULL';\n    const params: any[] = [];\n\n    if (query.tags && query.tags.length > 0) {\n      sql += ' AND (' + query.tags.map(() => '(tags LIKE ? OR expandedTags LIKE ?)').join(' OR ') + ')';\n      for (const tag of query.tags) {\n        params.push(`%\"${tag}\"%`, `%\"${tag}\"%`);\n      }\n    }\n\n    sql += \" ORDER BY CASE impact WHEN 'critical' THEN 1 WHEN 'high' THEN 2 WHEN 'medium' THEN 3 ELSE 4 END, timestamp DESC\";\n\n    if (query.limit) {\n      sql += ' LIMIT ?';\n      params.push(query.limit);\n    }\n\n    const rows = this.warmDb.prepare(sql).all(...params) as any[];\n\n    return rows.map(row => ({\n      id: row.id,\n      blocker: row.blocker,\n      impact: row.impact,\n      affectedAreas: JSON.parse(row.affectedAreas),\n      when: row.when,\n      resolvedAt: row.resolvedAt,\n      resolution: row.resolution,\n      tags: JSON.parse(row.tags)\n    }));\n  }\n\n  /**\n   * Get hot cache item\n   */\n  getHot<T>(key: string): T | undefined {\n    return this.hotCache.get(key);\n  }\n\n  /**\n   * Set hot cache item\n   */\n  setHot<T>(key: string, value: T): void {\n    this.hotCache.set(key, value);\n  }\n\n  /**\n   * Clear hot cache\n   */\n  clearHot(): void {\n    this.hotCache.clear();\n  }\n\n  /**\n   * Store a nudge in warm storage\n   */\n  async storeNudge(nudge: Nudge): Promise<void> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const stmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO nudges\n      (id, message, severity, file, category, goalId, timestamp, resolved, resolvedAt, resolution, dismissed, priority, suggestedAction, relatedIssues, metadata)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n\n    stmt.run(\n      nudge.id,\n      nudge.message,\n      nudge.severity,\n      nudge.file || null,\n      nudge.category || null,\n      nudge.goalId || null,\n      nudge.timestamp,\n      nudge.resolved ? 1 : 0,\n      nudge.resolvedAt || null,\n      nudge.resolution || null,\n      nudge.dismissed ? 1 : 0,\n      nudge.priority,\n      nudge.suggestedAction || null,\n      JSON.stringify(nudge.relatedIssues || []),\n      JSON.stringify(nudge.metadata || {})\n    );\n  }\n\n  /**\n   * Query nudges from warm storage\n   */\n  async queryNudges(filters?: {\n    resolved?: boolean;\n    severity?: string;\n    file?: string;\n    category?: string;\n    goalId?: string;\n    limit?: number;\n  }): Promise<Nudge[]> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    let sql = 'SELECT * FROM nudges WHERE 1=1';\n    const params: any[] = [];\n\n    if (filters?.resolved !== undefined) {\n      sql += ' AND resolved = ?';\n      params.push(filters.resolved ? 1 : 0);\n    }\n\n    if (filters?.severity) {\n      sql += ' AND severity = ?';\n      params.push(filters.severity);\n    }\n\n    if (filters?.file) {\n      sql += ' AND file = ?';\n      params.push(filters.file);\n    }\n\n    if (filters?.category) {\n      sql += ' AND category = ?';\n      params.push(filters.category);\n    }\n\n    if (filters?.goalId) {\n      sql += ' AND goalId = ?';\n      params.push(filters.goalId);\n    }\n\n    sql += ' ORDER BY timestamp DESC';\n\n    if (filters?.limit) {\n      sql += ' LIMIT ?';\n      params.push(filters.limit);\n    }\n\n    const rows = this.warmDb.prepare(sql).all(...params) as any[];\n\n    return rows.map(row => ({\n      id: row.id,\n      message: row.message,\n      severity: row.severity,\n      file: row.file || undefined,\n      category: row.category || undefined,\n      goalId: row.goalId || undefined,\n      timestamp: row.timestamp,\n      resolved: Boolean(row.resolved),\n      resolvedAt: row.resolvedAt || undefined,\n      resolution: row.resolution || undefined,\n      dismissed: Boolean(row.dismissed),\n      priority: row.priority,\n      suggestedAction: row.suggestedAction || undefined,\n      relatedIssues: JSON.parse(row.relatedIssues || '[]'),\n      metadata: JSON.parse(row.metadata || '{}'),\n    }));\n  }\n\n  /**\n   * Mark a nudge as resolved\n   */\n  async resolveNudge(nudgeId: string, resolution: 'dismissed' | 'fixed' | 'auto-fixed'): Promise<void> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const now = new Date().toISOString();\n    \n    this.warmDb.prepare(`\n      UPDATE nudges \n      SET resolved = 1, resolvedAt = ?, resolution = ?, dismissed = ?\n      WHERE id = ?\n    `).run(now, resolution, resolution === 'dismissed' ? 1 : 0, nudgeId);\n  }\n\n  /**\n   * Mark a nudge as dismissed\n   */\n  async dismissNudge(nudgeId: string): Promise<void> {\n    await this.resolveNudge(nudgeId, 'dismissed');\n  }\n\n  /**\n   * Store a gotcha in warm storage\n   */\n  async storeGotcha(gotcha: Gotcha): Promise<void> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const stmt = this.warmDb.prepare(`\n      INSERT OR REPLACE INTO gotchas\n      (id, message, confidence, riskLevel, recommendation, file, timestamp, precedentId, tags, evidence, resolved, resolvedAt, resolution)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n\n    stmt.run(\n      gotcha.id,\n      gotcha.message,\n      gotcha.confidence,\n      gotcha.riskLevel,\n      gotcha.recommendation,\n      gotcha.file || null,\n      gotcha.timestamp,\n      gotcha.precedentId || null,\n      JSON.stringify(gotcha.tags || []),\n      JSON.stringify(gotcha.evidence || { pastIncidents: [], matchingPatterns: [], relatedTickets: [] }),\n      gotcha.resolved ? 1 : 0,\n      gotcha.resolvedAt || null,\n      gotcha.resolution || null\n    );\n  }\n\n  /**\n   * Query gotchas from warm storage\n   */\n  async queryGotchas(filters?: {\n    resolved?: boolean;\n    riskLevel?: string;\n    file?: string;\n    limit?: number;\n  }): Promise<Gotcha[]> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    let sql = 'SELECT * FROM gotchas WHERE 1=1';\n    const params: any[] = [];\n\n    if (filters?.resolved !== undefined) {\n      sql += ' AND resolved = ?';\n      params.push(filters.resolved ? 1 : 0);\n    }\n\n    if (filters?.riskLevel) {\n      sql += ' AND riskLevel = ?';\n      params.push(filters.riskLevel);\n    }\n\n    if (filters?.file) {\n      sql += ' AND file = ?';\n      params.push(filters.file);\n    }\n\n    sql += ' ORDER BY timestamp DESC';\n\n    if (filters?.limit) {\n      sql += ' LIMIT ?';\n      params.push(filters.limit);\n    }\n\n    const rows = this.warmDb.prepare(sql).all(...params) as any[];\n\n    return rows.map(row => ({\n      id: row.id,\n      message: row.message,\n      confidence: row.confidence,\n      riskLevel: row.riskLevel,\n      recommendation: row.recommendation,\n      file: row.file || undefined,\n      timestamp: row.timestamp,\n      precedentId: row.precedentId || undefined,\n      tags: JSON.parse(row.tags || '[]'),\n      evidence: JSON.parse(row.evidence || '{\"pastIncidents\":[],\"matchingPatterns\":[],\"relatedTickets\":[]}'),\n      resolved: Boolean(row.resolved),\n      resolvedAt: row.resolvedAt || undefined,\n      resolution: row.resolution || undefined,\n    }));\n  }\n\n  /**\n   * Get unresolved nudges count\n   */\n  async getUnresolvedNudgesCount(): Promise<number> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const result = this.warmDb.prepare('SELECT COUNT(*) as count FROM nudges WHERE resolved = 0').get() as { count: number };\n    return result.count;\n  }\n\n  /**\n   * Archive old data to cold storage\n   */\n  async archiveToCold(olderThanDays: number = 90): Promise<void> {\n    if (!this.warmDb) await this.initialize();\n    if (!this.warmDb) throw new Error('Database not initialized');\n\n    const cutoffDate = new Date();\n    cutoffDate.setDate(cutoffDate.getDate() - olderThanDays);\n    const cutoff = cutoffDate.toISOString();\n\n    // Export to cold storage\n    const coldDir = join(getTrieDirectory(this.workDir), 'cold');\n    const archivePath = join(coldDir, `archive-${Date.now()}.json`);\n\n    const governance = this.warmDb.prepare('SELECT * FROM governance WHERE timestamp < ? AND accessCount < 3').all(cutoff);\n    const facts = this.warmDb.prepare('SELECT * FROM facts WHERE timestamp < ? AND accessCount < 3').all(cutoff);\n    const blockers = this.warmDb.prepare('SELECT * FROM blockers WHERE timestamp < ? AND resolvedAt IS NOT NULL').all(cutoff);\n    const questions = this.warmDb.prepare('SELECT * FROM questions WHERE timestamp < ? AND answeredAt IS NOT NULL').all(cutoff);\n    const nudges = this.warmDb.prepare('SELECT * FROM nudges WHERE timestamp < ? AND resolved = 1').all(cutoff);\n    const gotchas = this.warmDb.prepare('SELECT * FROM gotchas WHERE timestamp < ? AND resolved = 1').all(cutoff);\n\n    await writeFile(archivePath, JSON.stringify({ governance, facts, blockers, questions, nudges, gotchas }, null, 2));\n\n    // Delete from warm storage\n    this.warmDb.prepare('DELETE FROM governance WHERE timestamp < ? AND accessCount < 3').run(cutoff);\n    this.warmDb.prepare('DELETE FROM facts WHERE timestamp < ? AND accessCount < 3').run(cutoff);\n    this.warmDb.prepare('DELETE FROM blockers WHERE timestamp < ? AND resolvedAt IS NOT NULL').run(cutoff);\n    this.warmDb.prepare('DELETE FROM questions WHERE timestamp < ? AND answeredAt IS NOT NULL').run(cutoff);\n    this.warmDb.prepare('DELETE FROM nudges WHERE timestamp < ? AND resolved = 1').run(cutoff);\n    this.warmDb.prepare('DELETE FROM gotchas WHERE timestamp < ? AND resolved = 1').run(cutoff);\n  }\n\n  /**\n   * Close database connection\n   */\n  close(): void {\n    if (this.warmDb) {\n      this.warmDb.close();\n      this.warmDb = null;\n    }\n  }\n}\n\n/**\n * Get storage instance for working directory\n */\nconst storageInstances = new Map<string, TieredStorage>();\n\nexport function getStorage(workDir: string): TieredStorage {\n  if (!storageInstances.has(workDir)) {\n    storageInstances.set(workDir, new TieredStorage(workDir));\n  }\n  return 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package/dist/github-ingester-AR5A4RAC.js

@@ -1,11 +0,0 @@
-import {
-  GitHubIngester
-} from "./chunk-CBAMZERA.js";
-import "./chunk-FTOF3FHT.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
-import "./chunk-DGUM43GV.js";
-export {
-  GitHubIngester
-};
-//# sourceMappingURL=github-ingester-AR5A4RAC.js.map

package/dist/graph-JO7GG65P.js

@@ -1,10 +0,0 @@
-import {
-  ContextGraph
-} from "./chunk-JYWGYUKX.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
-import "./chunk-DGUM43GV.js";
-export {
-  ContextGraph
-};
-//# sourceMappingURL=graph-JO7GG65P.js.map

package/dist/incident-index-7CAXUNTL.js

@@ -1,11 +0,0 @@
-import {
-  IncidentIndex
-} from "./chunk-KYKADM7P.js";
-import "./chunk-6NLHFIYA.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
-import "./chunk-DGUM43GV.js";
-export {
-  IncidentIndex
-};
-//# sourceMappingURL=incident-index-7CAXUNTL.js.map

package/dist/linear-ingester-NHFMKJBZ.js

@@ -1,11 +0,0 @@
-import {
-  LinearIngester
-} from "./chunk-FXZAABXO.js";
-import "./chunk-FTOF3FHT.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
-import "./chunk-DGUM43GV.js";
-export {
-  LinearIngester
-};
-//# sourceMappingURL=linear-ingester-NHFMKJBZ.js.map

package/dist/tiered-storage-SQDVZM2M.js

@@ -1,12 +0,0 @@
-import {
-  TieredStorage,
-  getStorage
-} from "./chunk-XUGUKSKO.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
-import "./chunk-DGUM43GV.js";
-export {
-  TieredStorage,
-  getStorage
-};
-//# sourceMappingURL=tiered-storage-SQDVZM2M.js.map