@triedotdev/mcp 1.0.155 → 1.0.156

package/dist/{autonomy-config-RKLZW4XL.js → autonomy-config-FSERX3O3.js}

@@ -10,9 +10,9 @@ import {
   shouldAutoFix,
   shouldBlockPush,
   trackIssueOccurrence
-} from "./chunk-XD2HKZVB.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
+} from "./chunk-ME2OERF5.js";
+import "./chunk-VVITXIHN.js";
+import "./chunk-KDHN2ZQE.js";
 import "./chunk-DGUM43GV.js";
 export {
   clearConfigCache,
@@ -27,4 +27,4 @@ export {
   shouldBlockPush,
   trackIssueOccurrence
 };
-//# sourceMappingURL=autonomy-config-RKLZW4XL.js.map
+//# sourceMappingURL=autonomy-config-FSERX3O3.js.map

package/dist/{chat-store-O3IJ5PMN.js → chat-store-JNGNTDSN.js}

@@ -2,14 +2,14 @@ import {
   ChatStore,
   clearChatStores,
   getChatStore
-} from "./chunk-3CYMLM35.js";
+} from "./chunk-JVMBCWKS.js";
 import "./chunk-43X6JBEM.js";
-import "./chunk-7F2R2ITA.js";
-import "./chunk-JKEEQAG2.js";
+import "./chunk-VVITXIHN.js";
+import "./chunk-KDHN2ZQE.js";
 import "./chunk-DGUM43GV.js";
 export {
   ChatStore,
   clearChatStores,
   getChatStore
 };
-//# sourceMappingURL=chat-store-O3IJ5PMN.js.map
+//# sourceMappingURL=chat-store-JNGNTDSN.js.map

package/dist/{chunk-L4FODDDB.js → chunk-5BYSJ7XT.js}

@@ -7,7 +7,7 @@ import {
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory
-} from "./chunk-7F2R2ITA.js";
+} from "./chunk-VVITXIHN.js";
 
 // src/agent/project-state.ts
 import { mkdir, readFile } from "fs/promises";
@@ -686,4 +686,4 @@ function getProjectState(projectPath) {
 export {
   getProjectState
 };
-//# sourceMappingURL=chunk-L4FODDDB.js.map
+//# sourceMappingURL=chunk-5BYSJ7XT.js.map

package/dist/{chunk-LFNH3CSN.js → chunk-5TRCQAOE.js}

@@ -1,13 +1,13 @@
 import {
   getInsightStore
-} from "./chunk-T7UAH7GE.js";
+} from "./chunk-T63OHG4Q.js";
 import {
   getProjectState
-} from "./chunk-L4FODDDB.js";
+} from "./chunk-5BYSJ7XT.js";
 import {
   getMemoryStats,
   searchIssues
-} from "./chunk-4ZAFQEP6.js";
+} from "./chunk-IRZXBQVQ.js";
 
 // src/agent/goal-manager.ts
 import { basename } from "path";
@@ -648,4 +648,4 @@ export {
   getGoalManager,
   clearGoalManagers
 };
-//# sourceMappingURL=chunk-LFNH3CSN.js.map
+//# sourceMappingURL=chunk-5TRCQAOE.js.map

package/dist/{chunk-CBAMZERA.js → chunk-ACU2RJUJ.js}

@@ -1,6 +1,6 @@
 import {
   loadConfig
-} from "./chunk-FTOF3FHT.js";
+} from "./chunk-GDWA3CH3.js";
 
 // src/ingest/github-ingester.ts
 import path from "path";
@@ -213,4 +213,4 @@ var GitHubIngester = class {
 export {
   GitHubIngester
 };
-//# sourceMappingURL=chunk-CBAMZERA.js.map
+//# sourceMappingURL=chunk-ACU2RJUJ.js.map

package/dist/{chunk-X64XFVAY.js → chunk-CYKJIQNG.js}

@@ -1,38 +1,38 @@
 import {
   getGoalManager
-} from "./chunk-LFNH3CSN.js";
+} from "./chunk-5TRCQAOE.js";
 import {
   getHypothesisEngine
-} from "./chunk-NVZZUUEU.js";
+} from "./chunk-LR46VMIE.js";
 import {
   getInsightStore
-} from "./chunk-T7UAH7GE.js";
+} from "./chunk-T63OHG4Q.js";
 import {
   GotchaPredictor,
   SlackIntegration,
   findCrossProjectPatterns,
   recordToGlobalMemory
-} from "./chunk-RY57G46E.js";
+} from "./chunk-OMZSQAQ2.js";
 import {
   ContextGraph
-} from "./chunk-JYWGYUKX.js";
+} from "./chunk-VUL52BQL.js";
 import {
   isAIAvailable,
   runAIAnalysis
-} from "./chunk-UL337UDQ.js";
+} from "./chunk-FQ45QP5A.js";
 import {
   getProjectState
-} from "./chunk-L4FODDDB.js";
+} from "./chunk-5BYSJ7XT.js";
 import {
   getStorage
-} from "./chunk-XUGUKSKO.js";
+} from "./chunk-FNZPMR62.js";
 import {
   autoResolveIssues,
   getHistoricalInsights,
   getIssueHash,
   searchIssues,
   storeIssues
-} from "./chunk-4ZAFQEP6.js";
+} from "./chunk-IRZXBQVQ.js";
 
 // src/agent/trie-agent.ts
 import { basename as basename2 } from "path";
@@ -1322,9 +1322,9 @@ var TrieAgent = class {
     }
     if (issues.length >= 5 && this.canCreateInsight("pattern-discovery")) {
       try {
-        const { IncidentIndex } = await import("./incident-index-7CAXUNTL.js");
+        const { IncidentIndex } = await import("./incident-index-EFNUSGWL.js");
         const { TriePatternDiscovery } = await import("./pattern-discovery-F7LU5K6E.js");
-        const { ContextGraph: ContextGraph2 } = await import("./graph-JO7GG65P.js");
+        const { ContextGraph: ContextGraph2 } = await import("./graph-B3NA4S7I.js");
         const graph = new ContextGraph2(this.projectPath);
         const incidentIndex = await IncidentIndex.build(graph, this.projectPath);
         const discovery = new TriePatternDiscovery(graph, incidentIndex);
@@ -1581,7 +1581,7 @@ var TrieAgent = class {
     await this.projectState.recordScan();
     try {
       const riskLevel = issues.filter((i) => i.severity === "critical").length > 0 ? "critical" : issues.filter((i) => i.severity === "serious").length >= 3 ? "high" : issues.length > 10 ? "medium" : "low";
-      const { calculateAdaptiveScanFrequency } = await import("./goal-manager-5QDITJKE.js");
+      const { calculateAdaptiveScanFrequency } = await import("./goal-manager-D6XKE3FY.js");
       const result = await calculateAdaptiveScanFrequency(riskLevel);
       await this.projectState.setScanFrequency(result.frequencyMs);
     } catch {
@@ -1810,4 +1810,4 @@ export {
   TrieAgent,
   getTrieAgent
 };
-//# sourceMappingURL=chunk-X64XFVAY.js.map
+//# sourceMappingURL=chunk-CYKJIQNG.js.map

package/dist/{chunk-EMJ7RVWB.js → chunk-EJKVKVWM.js}

@@ -1,35 +1,35 @@
 import {
   IncidentIndex
-} from "./chunk-KYKADM7P.js";
+} from "./chunk-TN5WEKWI.js";
 import {
   TriePatternDiscovery
 } from "./chunk-ZV2K6M7T.js";
 import {
   ContextGraph
-} from "./chunk-JYWGYUKX.js";
+} from "./chunk-VUL52BQL.js";
 import {
   scanForVulnerabilities
-} from "./chunk-WO7CC5FH.js";
+} from "./chunk-SY6KQG44.js";
 import {
   scanForVibeCodeIssues
-} from "./chunk-2LAJKFWU.js";
+} from "./chunk-OMR4YCBS.js";
 import {
   storeIssues
-} from "./chunk-4ZAFQEP6.js";
+} from "./chunk-IRZXBQVQ.js";
 import {
   getDiff,
   getRecentCommits,
   getStagedChanges,
   getUncommittedChanges,
   getWorkingTreeDiff
-} from "./chunk-HD5H7YSW.js";
+} from "./chunk-Y4B3VEL7.js";
 import {
   getTrieDirectory,
   getWorkingDirectory
-} from "./chunk-7F2R2ITA.js";
+} from "./chunk-VVITXIHN.js";
 import {
   isInteractiveMode
-} from "./chunk-JKEEQAG2.js";
+} from "./chunk-KDHN2ZQE.js";
 
 // src/cli/checkpoint.ts
 import { existsSync } from "fs";
@@ -596,7 +596,7 @@ async function ensureFileNode(graph, filePath, projectPath) {
 }
 
 // src/agent/risk-scorer.ts
-import path4 from "path";
+import * as path4 from "path";
 var BASE_RISK = {
   low: 10,
   medium: 35,
@@ -794,7 +794,7 @@ var ParallelExecutor = class {
     const parallelResults = await this.executeTasksParallel(uncachedTasks);
     await this.cacheResults(parallelResults);
     const allResults = /* @__PURE__ */ new Map();
-    for (const [agent, result] of cacheResults) {
+    for (const [agent, result] of Array.from(cacheResults.entries())) {
       allResults.set(agent, result);
     }
     for (const result of parallelResults) {
@@ -910,7 +910,7 @@ var ParallelExecutor = class {
   }
   async executeTaskInWorker(task) {
     const workerUrl = this.getWorkerUrl();
-    return new Promise((resolve, reject) => {
+    return new Promise((resolve2, reject) => {
       const worker = new Worker(workerUrl, {
         workerData: {
           agentName: task.agent.name,
@@ -926,7 +926,7 @@ var ParallelExecutor = class {
       worker.on("message", (message) => {
         if (message?.type === "result") {
           clearTimeout(timeout);
-          resolve(message.result);
+          resolve2(message.result);
         } else if (message?.type === "error") {
           clearTimeout(timeout);
           reject(new Error(message.error));
@@ -1167,7 +1167,7 @@ var CacheManager = class {
       const entries = Object.values(index.entries);
       const totalSizeKB = entries.reduce((acc, entry) => acc + entry.fileSize, 0) / 1024;
       const timestamps = entries.map((e) => e.timestamp);
-      const agents = [...new Set(entries.map((e) => e.agent))];
+      const agents = Array.from(new Set(entries.map((e) => e.agent)));
       return {
         totalEntries: entries.length,
         totalSizeKB: Math.round(totalSizeKB),
@@ -1211,7 +1211,7 @@ var CacheManager = class {
             if (!currentHash) {
               continue;
             }
-            for (const agent of agents) {
+            for (const agent of Array.from(agents)) {
               for (const [key, entry] of Object.entries(index.entries)) {
                 if (entry.agent !== agent) continue;
                 if (entry.fileHash !== currentHash) {
@@ -1228,7 +1228,7 @@ var CacheManager = class {
           }
         }
       }
-      const uniqueKeys = [...new Set(keysToRemove)];
+      const uniqueKeys = Array.from(new Set(keysToRemove));
       for (const key of uniqueKeys) {
         delete index.entries[key];
       }
@@ -1325,14 +1325,14 @@ var Executor = class {
     }
   }
   async executeAgentWithTimeout(agent, files, context, timeoutMs = 3e4) {
-    return new Promise(async (resolve, reject) => {
+    return new Promise(async (resolve2, reject) => {
       const timeout = setTimeout(() => {
         reject(new Error(`Agent ${agent.name} timed out after ${timeoutMs}ms`));
       }, timeoutMs);
       try {
         const result = await agent.scan(files, context);
         clearTimeout(timeout);
-        resolve(result);
+        resolve2(result);
       } catch (error) {
         clearTimeout(timeout);
         reject(error);
@@ -1481,4 +1481,4 @@ export {
   handleCheckpointCommand,
   isTrieInitialized
 };
-//# sourceMappingURL=chunk-EMJ7RVWB.js.map
+//# sourceMappingURL=chunk-EJKVKVWM.js.map

package/dist/chunk-EJKVKVWM.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/checkpoint.ts","../src/utils/trie-init.ts","../src/context/sync.ts","../src/utils/errors.ts","../src/agent/confidence.ts","../src/agent/learning.ts","../src/agent/learning-engine.ts","../src/agent/perceive.ts","../src/agent/diff-analyzer.ts","../src/agent/risk-scorer.ts","../src/agent/pattern-matcher.ts","../src/orchestrator/triager.ts","../src/utils/parallel-executor.ts","../src/utils/cache-manager.ts","../src/orchestrator/executor.ts","../src/agent/reason.ts"],"sourcesContent":["/**\n * Checkpoint CLI\n * \n * Save your work context to .trie/ without running a full scan.\n * Think of it as a quick save - captures what you're working on.\n */\n\nimport { existsSync } from 'fs';\nimport { mkdir, writeFile, readFile } from 'fs/promises';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from '../utils/workspace.js';\n\nexport interface Checkpoint {\n  id: string;\n  timestamp: string;\n  message?: string;\n  files: string[];\n  notes?: string;\n  createdBy: 'cli' | 'mcp';\n}\n\nexport interface CheckpointLog {\n  checkpoints: Checkpoint[];\n  lastCheckpoint?: string;\n}\n\n/**\n * Save a checkpoint\n */\nexport async function saveCheckpoint(options: {\n  message?: string;\n  files?: string[];\n  notes?: string;\n  workDir?: string;\n  createdBy?: 'cli' | 'mcp';\n}): Promise<Checkpoint> {\n  const workDir = options.workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(workDir);\n  const checkpointPath = join(trieDir, 'checkpoints.json');\n  \n  await mkdir(trieDir, { recursive: true });\n  \n  // Load existing checkpoints\n  let log: CheckpointLog = { checkpoints: [] };\n  try {\n    if (existsSync(checkpointPath)) {\n      log = JSON.parse(await readFile(checkpointPath, 'utf-8'));\n    }\n  } catch {\n    log = { checkpoints: [] };\n  }\n  \n  // Create new checkpoint\n  const checkpoint: Checkpoint = {\n    id: `cp-${Date.now().toString(36)}`,\n    timestamp: new Date().toISOString(),\n    files: options.files || [],\n    createdBy: options.createdBy || 'cli',\n  };\n  if (options.message) checkpoint.message = options.message;\n  if (options.notes) checkpoint.notes = options.notes;\n  \n  // Add to log\n  log.checkpoints.push(checkpoint);\n  log.lastCheckpoint = checkpoint.id;\n  \n  // Keep last 50 checkpoints\n  if (log.checkpoints.length > 50) {\n    log.checkpoints = log.checkpoints.slice(-50);\n  }\n  \n  // Save\n  await writeFile(checkpointPath, JSON.stringify(log, null, 2));\n  \n  // Also update AGENTS.md with checkpoint note\n  await updateAgentsMdWithCheckpoint(checkpoint, workDir);\n  \n  return checkpoint;\n}\n\n/**\n * List checkpoints\n */\nexport async function listCheckpoints(workDir?: string): Promise<Checkpoint[]> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const checkpointPath = join(getTrieDirectory(dir), 'checkpoints.json');\n  \n  try {\n    if (existsSync(checkpointPath)) {\n      const log: CheckpointLog = JSON.parse(await readFile(checkpointPath, 'utf-8'));\n      return log.checkpoints;\n    }\n  } catch {\n    // File doesn't exist or is corrupted\n  }\n  \n  return [];\n}\n\n/**\n * Get the last checkpoint\n */\nexport async function getLastCheckpoint(workDir?: string): Promise<Checkpoint | null> {\n  const checkpoints = await listCheckpoints(workDir);\n  const last = checkpoints[checkpoints.length - 1];\n  return last ?? null;\n}\n\n/**\n * Update AGENTS.md with checkpoint info\n */\nasync function updateAgentsMdWithCheckpoint(checkpoint: Checkpoint, workDir: string): Promise<void> {\n  const agentsPath = join(getTrieDirectory(workDir), 'AGENTS.md');\n  \n  let content = '';\n  try {\n    if (existsSync(agentsPath)) {\n      content = await readFile(agentsPath, 'utf-8');\n    }\n  } catch {\n    content = '';\n  }\n  \n  // Find or create checkpoint section\n  const checkpointSection = `\n## Last Checkpoint\n\n- **ID:** ${checkpoint.id}\n- **Time:** ${checkpoint.timestamp}\n${checkpoint.message ? `- **Message:** ${checkpoint.message}` : ''}\n${checkpoint.files.length > 0 ? `- **Files:** ${checkpoint.files.length} files` : ''}\n${checkpoint.notes ? `- **Notes:** ${checkpoint.notes}` : ''}\n`;\n  \n  // Replace existing checkpoint section or append\n  const checkpointRegex = /## Last Checkpoint[\\s\\S]*?(?=\\n## |\\n---|\\Z)/;\n  if (checkpointRegex.test(content)) {\n    content = content.replace(checkpointRegex, checkpointSection.trim());\n  } else {\n    content = content.trim() + '\\n\\n' + checkpointSection.trim() + '\\n';\n  }\n  \n  await writeFile(agentsPath, content);\n}\n\n/**\n * CLI handler for checkpoint command\n */\nexport async function handleCheckpointCommand(args: string[]): Promise<void> {\n  const subcommand = args[0] || 'save';\n  \n  switch (subcommand) {\n    case 'save': {\n      // Parse options\n      let message: string | undefined;\n      let notes: string | undefined;\n      const files: string[] = [];\n      \n      for (let i = 1; i < args.length; i++) {\n        const arg = args[i];\n        if (arg === '-m' || arg === '--message') {\n          message = args[++i] ?? '';\n        } else if (arg === '-n' || arg === '--notes') {\n          notes = args[++i] ?? '';\n        } else if (arg === '-f' || arg === '--file') {\n          const file = args[++i];\n          if (file) files.push(file);\n        } else if (arg && !arg.startsWith('-')) {\n          // Treat as message if no flag\n          message = arg;\n        }\n      }\n      \n      const opts: { message?: string; files?: string[]; notes?: string } = { files };\n      if (message) opts.message = message;\n      if (notes) opts.notes = notes;\n      const checkpoint = await saveCheckpoint(opts);\n      \n      console.log('\\n  Checkpoint saved\\n');\n      console.log(`  ID: ${checkpoint.id}`);\n      console.log(`  Time: ${checkpoint.timestamp}`);\n      if (checkpoint.message) {\n        console.log(`  Message: ${checkpoint.message}`);\n      }\n      if (checkpoint.files.length > 0) {\n        console.log(`  Files: ${checkpoint.files.join(', ')}`);\n      }\n      console.log('\\n  Context saved to .trie/\\n');\n      break;\n    }\n    \n    case 'list': {\n      const checkpoints = await listCheckpoints();\n      \n      if (checkpoints.length === 0) {\n        console.log('\\n  No checkpoints yet. Run `trie checkpoint` to save one.\\n');\n        return;\n      }\n      \n      console.log('\\n  Checkpoints:\\n');\n      for (const cp of checkpoints.slice(-10).reverse()) {\n        const date = new Date(cp.timestamp).toLocaleString();\n        console.log(`  ${cp.id}  ${date}  ${cp.message || '(no message)'}`);\n      }\n      console.log('');\n      break;\n    }\n    \n    case 'last': {\n      const checkpoint = await getLastCheckpoint();\n      \n      if (!checkpoint) {\n        console.log('\\n  No checkpoints yet. Run `trie checkpoint` to save one.\\n');\n        return;\n      }\n      \n      console.log('\\n  Last Checkpoint:\\n');\n      console.log(`  ID: ${checkpoint.id}`);\n      console.log(`  Time: ${new Date(checkpoint.timestamp).toLocaleString()}`);\n      if (checkpoint.message) {\n        console.log(`  Message: ${checkpoint.message}`);\n      }\n      if (checkpoint.notes) {\n        console.log(`  Notes: ${checkpoint.notes}`);\n      }\n      if (checkpoint.files.length > 0) {\n        console.log(`  Files: ${checkpoint.files.join(', ')}`);\n      }\n      console.log('');\n      break;\n    }\n    \n    default:\n      console.log(`\n  Usage: trie checkpoint [command] [options]\n\n  Commands:\n    save [message]     Save a checkpoint (default)\n    list               List recent checkpoints\n    last               Show the last checkpoint\n\n  Options:\n    -m, --message      Checkpoint message\n    -n, --notes        Additional notes\n    -f, --file         File to include (can be repeated)\n\n  Examples:\n    trie checkpoint \"finished auth flow\"\n    trie checkpoint save -m \"WIP: payment integration\" -n \"needs testing\"\n    trie checkpoint list\n`);\n  }\n}\n","import { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from './workspace.js';\n\nconst INIT_MARKERS = [\n  'PROJECT.md',\n  'RULES.md',\n  'TEAM.md',\n  'BOOTSTRAP.md',\n  'AGENTS.md',\n  'config.json',\n];\n\nexport function isTrieInitialized(workDir?: string): boolean {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(dir);\n  return INIT_MARKERS.some((marker) => existsSync(join(trieDir, marker)));\n}\n","import fs from 'node:fs/promises';\nimport path from 'node:path';\nimport { getTrieDirectory } from '../utils/workspace.js';\n\nimport { ContextGraph } from './graph.js';\nimport type { ContextSnapshot } from './types.js';\n\nconst DEFAULT_JSON_NAME = 'context.json';\n\nexport async function exportToJson(graph: ContextGraph, targetPath?: string): Promise<string> {\n  const snapshot = await graph.getSnapshot();\n  const json = JSON.stringify(snapshot, null, 2);\n\n  const outputPath = targetPath ?? path.join(getTrieDirectory(graph.projectRoot), DEFAULT_JSON_NAME);\n  await fs.mkdir(path.dirname(outputPath), { recursive: true });\n  await fs.writeFile(outputPath, json, 'utf8');\n\n  return json;\n}\n\nexport async function importFromJson(\n  graph: ContextGraph,\n  json: string,\n  sourcePath?: string\n): Promise<void> {\n  const payload =\n    json.trim().length > 0\n      ? json\n      : await fs.readFile(sourcePath ?? path.join(getTrieDirectory(graph.projectRoot), DEFAULT_JSON_NAME), 'utf8');\n\n  const snapshot = JSON.parse(payload) as ContextSnapshot;\n  await graph.applySnapshot(snapshot);\n}\n","export class TrieError extends Error {\n  code: string;\n  recoverable: boolean;\n  userMessage: string;\n\n  constructor(message: string, code: string, userMessage: string, recoverable = true) {\n    super(message);\n    this.code = code;\n    this.recoverable = recoverable;\n    this.userMessage = userMessage;\n  }\n}\n\nexport class GraphError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'GRAPH_ERROR',\n      'Trie had trouble accessing its memory. Try again or re-run trie reconcile.',\n      true\n    );\n  }\n}\n\nexport class GitError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'GIT_ERROR',\n      'Git info is unavailable. Is this a git repo? Commit once, or pass --files to trie check.',\n      true\n    );\n  }\n}\n\nexport class NetworkError extends TrieError {\n  constructor(message: string) {\n    super(\n      message,\n      'NETWORK_ERROR',\n      'Network unavailable. Running in offline mode; AI calls skipped.',\n      true\n    );\n  }\n}\n\nexport class MissingAPIKeyError extends TrieError {\n  constructor(message = 'Missing ANTHROPIC_API_KEY') {\n    super(\n      message,\n      'MISSING_API_KEY',\n      'No API key detected. Set ANTHROPIC_API_KEY for AI-powered analysis (deeper issue detection, smarter fixes). Running in pattern-only mode.',\n      true\n    );\n  }\n}\n\nexport function formatFriendlyError(error: unknown): { userMessage: string; code: string } {\n  if (error instanceof TrieError) {\n    return { userMessage: error.userMessage, code: error.code };\n  }\n  return {\n    userMessage: 'Something went wrong. Try again or run with --offline.',\n    code: 'UNKNOWN'\n  };\n}\n","/**\n * Lightweight Bayesian-style confidence updater.\n * Treats confidence as probability in [0,1].\n */\n\nexport function bayesianUpdate(prior: number, evidence: number, weight = 1): number {\n  const p = clamp(prior);\n  const e = clamp(evidence);\n  const w = Math.max(0, weight);\n  // Blend prior with evidence weighted by w\n  const posterior = (p * (1 - w)) + (e * w);\n  return clamp(posterior);\n}\n\nexport function adjustConfidence(current: number, outcome: 'positive' | 'negative', step = 0.1): number {\n  const delta = outcome === 'positive' ? step : -step;\n  return clamp(current + delta);\n}\n\nfunction clamp(value: number): number {\n  if (Number.isNaN(value)) return 0.5;\n  return Math.min(1, Math.max(0, value));\n}\n","import { ContextGraph } from '../context/graph.js';\nimport type { IncidentNode, PatternNode } from '../context/nodes.js';\nimport { IncidentIndex } from '../context/incident-index.js';\nimport { adjustConfidence } from './confidence.js';\nimport { TriePatternDiscovery } from './pattern-discovery.js';\n\nexport class LearningSystem {\n  private incidentIndex: IncidentIndex;\n  private discovery: TriePatternDiscovery;\n\n  constructor(private graph: ContextGraph, projectPath: string) {\n    this.incidentIndex = new IncidentIndex(graph, projectPath);\n    this.discovery = new TriePatternDiscovery(graph, this.incidentIndex);\n  }\n\n  async onWarningHeeded(files: string[]): Promise<void> {\n    await this.adjustPatterns(files, 'positive');\n  }\n\n  async onWarningIgnored(files: string[]): Promise<void> {\n    await this.adjustPatterns(files, 'negative');\n  }\n\n  async onIncidentReported(incidentId: string, files: string[]): Promise<void> {\n    const incident = await this.graph.getNode('incident', incidentId);\n    if (incident && incident.type === 'incident') {\n      this.incidentIndex.addIncidentToTrie(incident as IncidentNode, files);\n    }\n    await this.discoverAndStorePatterns();\n  }\n\n  async onFeedback(helpful: boolean, files: string[] = []): Promise<void> {\n    await this.adjustPatterns(files, helpful ? 'positive' : 'negative');\n  }\n\n  private async adjustPatterns(files: string[], outcome: 'positive' | 'negative'): Promise<void> {\n    if (!files.length) return;\n    for (const file of files) {\n      const patterns = await this.graph.getPatternsForFile(file);\n      await Promise.all(patterns.map((p) => this.updatePatternConfidence(p, outcome)));\n    }\n  }\n\n  private async updatePatternConfidence(pattern: PatternNode, outcome: 'positive' | 'negative'): Promise<void> {\n    const current = pattern.data.confidence ?? 0.5;\n    const updated = adjustConfidence(current, outcome, 0.05);\n    await this.graph.updateNode('pattern', pattern.id, { confidence: updated, lastSeen: new Date().toISOString() });\n  }\n\n  private async discoverAndStorePatterns(): Promise<void> {\n    const hotPatterns = this.discovery.discoverHotPatterns();\n    for (const hot of hotPatterns) {\n      await this.graph.addNode('pattern', {\n        description: `${hot.type === 'directory' ? 'Directory' : 'File'} hot zone: ${hot.path}`,\n        appliesTo: [hot.path],\n        confidence: hot.confidence,\n        occurrences: hot.incidentCount,\n        firstSeen: new Date().toISOString(),\n        lastSeen: new Date().toISOString(),\n        isAntiPattern: true,\n        source: 'local'\n      });\n    }\n  }\n}\n","import { getRecentCommits, getDiff } from '../agent/git.js';\nimport { storeIssues } from '../memory/issue-store.js';\nimport { scanForVulnerabilities } from '../trie/vulnerability-signatures.js';\nimport { scanForVibeCodeIssues } from '../trie/vibe-code-signatures.js';\nimport type { Issue } from '../types/index.js';\nimport { ContextGraph } from '../context/graph.js';\nimport type { DecisionNodeData } from '../context/nodes.js';\nimport { LearningSystem } from '../agent/learning.js';\nimport path from 'node:path';\n\nexport interface LearningResult {\n  learned: number;\n  source: 'git-history' | 'manual-feedback';\n}\n\nexport class LearningEngine {\n  private readonly projectPath: string;\n  private readonly graph: ContextGraph;\n  private readonly learningSystem: LearningSystem;\n\n  constructor(projectPath: string, graph?: ContextGraph) {\n    this.projectPath = projectPath;\n    this.graph = graph || new ContextGraph(projectPath);\n    this.learningSystem = new LearningSystem(this.graph, projectPath);\n  }\n\n  /**\n   * Unified learning method: Scans history AND processes manual feedback\n   */\n  async learn(options: { \n    limit?: number; \n    manualFeedback?: { helpful: boolean; files: string[]; note?: string } \n  } = {}): Promise<LearningResult[]> {\n    const results: LearningResult[] = [];\n\n    // 1. Implicit Learning from Git History\n    if (!options.manualFeedback) {\n      const implicitCount = await this.learnFromHistory(options.limit || 20);\n      results.push({ learned: implicitCount, source: 'git-history' });\n    }\n\n    // 2. Manual Feedback Learning\n    if (options.manualFeedback) {\n      await this.recordManualFeedback(\n        options.manualFeedback.helpful, \n        options.manualFeedback.files, \n        options.manualFeedback.note\n      );\n      results.push({ learned: options.manualFeedback.files.length || 1, source: 'manual-feedback' });\n    }\n\n    return results;\n  }\n\n  /**\n   * Scan recent commits for implicit failure signals (reverts, fixes)\n   */\n  private async learnFromHistory(limit: number = 20): Promise<number> {\n    const commits = await getRecentCommits(this.projectPath, limit);\n    const issuesToStore: Issue[] = [];\n\n    for (const commit of commits) {\n      const isRevert = commit.message.toLowerCase().includes('revert') || commit.message.startsWith('Revert \"');\n      const isFix = /fix(es|ed)?\\s+#\\d+/i.test(commit.message) || commit.message.toLowerCase().includes('bugfix');\n\n      if (isRevert || isFix) {\n        const type = isRevert ? 'revert' : 'fix';\n        const diff = await getDiff(this.projectPath, commit.hash);\n        const files = this.extractFilesFromDiff(diff);\n        \n        for (const file of files) {\n          const learnedIssues = await this.extractIssuesFromDiff(diff, file, type, commit.message);\n          issuesToStore.push(...learnedIssues);\n        }\n      }\n    }\n\n    if (issuesToStore.length > 0) {\n      const result = await storeIssues(issuesToStore, path.basename(this.projectPath), this.projectPath);\n      return result.stored;\n    }\n\n    return 0;\n  }\n\n  /**\n   * Record manual feedback (trie ok/bad) and adjust pattern confidence\n   */\n  private async recordManualFeedback(helpful: boolean, files: string[], note?: string): Promise<void> {\n    const context = files[0] ?? 'unspecified';\n    const decision = await this.graph.addNode('decision', {\n      context,\n      decision: helpful ? 'helpful' : 'not helpful',\n      reasoning: note ?? null,\n      outcome: helpful ? 'good' : 'bad',\n      timestamp: new Date().toISOString(),\n    } satisfies DecisionNodeData);\n\n    if (files.length > 0) {\n      for (const file of files) {\n        const fileNode = await this.graph.getNode('file', file);\n        if (fileNode) {\n          await this.graph.addEdge(decision.id, fileNode.id, 'affects');\n        }\n      }\n      await this.learningSystem.onFeedback(helpful, files);\n    }\n  }\n\n  private extractFilesFromDiff(diff: string): string[] {\n    const files = new Set<string>();\n    const lines = diff.split('\\n');\n    for (const line of lines) {\n      if (line.startsWith('+++ b/')) {\n        files.add(line.slice(6));\n      }\n    }\n    return Array.from(files);\n  }\n\n  private async extractIssuesFromDiff(diff: string, file: string, type: 'revert' | 'fix', message: string): Promise<Issue[]> {\n    const issues: Issue[] = [];\n    const badLines = this.getBadLinesFromDiff(diff, file, type);\n    const content = badLines.join('\\n');\n\n    if (!content) return [];\n\n    const vulnerabilities = await scanForVulnerabilities(content, file);\n    const vibeIssues = await scanForVibeCodeIssues(content, file);\n\n    const allMatches = [...vulnerabilities, ...vibeIssues];\n\n    for (const match of allMatches) {\n      issues.push({\n        id: `implicit-${type}-${Date.now()}-${Math.random().toString(36).slice(2, 7)}`,\n        severity: 'serious',\n        issue: `Implicit failure detected via ${type}: ${message}. Linked to pattern: ${match.category}`,\n        fix: `Review the ${type} commit and avoid this pattern in ${file}.`,\n        file: file,\n        confidence: 0.7,\n        autoFixable: false,\n        agent: 'implicit-learning',\n        category: match.category\n      });\n    }\n\n    if (issues.length === 0) {\n      issues.push({\n        id: `implicit-${type}-${Date.now()}`,\n        severity: 'moderate',\n        issue: `Historical ${type} detected: ${message}`,\n        fix: `Review the changes in ${file} from this commit to avoid regression.`,\n        file: file,\n        confidence: 0.5,\n        autoFixable: false,\n        agent: 'implicit-learning'\n      });\n    }\n\n    return issues;\n  }\n\n  private getBadLinesFromDiff(diff: string, file: string, type: 'revert' | 'fix'): string[] {\n    const badLines: string[] = [];\n    const lines = diff.split('\\n');\n    let inTargetFile = false;\n\n    for (const line of lines) {\n      if (line.startsWith('+++ b/') || line.startsWith('--- a/')) {\n        inTargetFile = line.includes(file);\n        continue;\n      }\n\n      if (!inTargetFile) continue;\n\n      if (type === 'fix' && line.startsWith('-') && !line.startsWith('---')) {\n        badLines.push(line.slice(1));\n      } else if (type === 'revert' && line.startsWith('+') && !line.startsWith('+++')) {\n        badLines.push(line.slice(1));\n      }\n    }\n\n    return badLines;\n  }\n}\n","import path from 'node:path';\n\nimport { analyzeDiff, type DiffSummary } from './diff-analyzer.js';\nimport {\n  getStagedChanges,\n  getUncommittedChanges,\n  getWorkingTreeDiff,\n  type Change\n} from './git.js';\nimport { ContextGraph } from '../context/graph.js';\nimport type { FileNode, FileNodeData } from '../context/nodes.js';\n\nexport interface PerceptionResult {\n  staged: Change[];\n  unstaged: Change[];\n  diffSummary: DiffSummary;\n  changeNodeId?: string;\n}\n\nexport async function perceiveCurrentChanges(\n  projectPath: string,\n  graph?: ContextGraph\n): Promise<PerceptionResult> {\n  const ctxGraph = graph ?? new ContextGraph(projectPath);\n\n  const [staged, unstaged] = await Promise.all([\n    getStagedChanges(projectPath),\n    getUncommittedChanges(projectPath)\n  ]);\n\n  const stagedDiff = await getWorkingTreeDiff(projectPath, true);\n  const unstagedDiff = await getWorkingTreeDiff(projectPath, false);\n  const combinedDiff = [stagedDiff, unstagedDiff].filter(Boolean).join('\\n');\n  const diffSummary = analyzeDiff(combinedDiff);\n\n  const filesTouched = new Set<string>();\n  staged.forEach((c) => filesTouched.add(c.path));\n  unstaged.forEach((c) => filesTouched.add(c.path));\n  diffSummary.files.forEach((f) => filesTouched.add(f.filePath));\n\n  const changeId = await upsertWorkingChange(ctxGraph, Array.from(filesTouched), projectPath);\n\n  const result: PerceptionResult = {\n    staged,\n    unstaged,\n    diffSummary\n  };\n  if (changeId) result.changeNodeId = changeId;\n  return result;\n}\n\nasync function upsertWorkingChange(\n  graph: ContextGraph,\n  files: string[],\n  projectPath: string\n): Promise<string | undefined> {\n  if (files.length === 0) return undefined;\n\n  const now = new Date().toISOString();\n  const change = await graph.addNode('change', {\n    commitHash: null,\n    files,\n    message: 'workspace changes',\n    diff: null,\n    author: null,\n    timestamp: now,\n    outcome: 'unknown'\n  });\n\n  for (const filePath of files) {\n    const fileNode = await ensureFileNode(graph, filePath, projectPath);\n    await graph.addEdge(change.id, fileNode.id, 'affects');\n  }\n\n  return change.id;\n}\n\nasync function ensureFileNode(\n  graph: ContextGraph,\n  filePath: string,\n  projectPath: string\n): Promise<FileNode> {\n  const normalized = path.resolve(projectPath, filePath);\n  const existing = await graph.getNode('file', normalized);\n\n  const now = new Date().toISOString();\n  if (existing) {\n    const data = existing.data as FileNodeData;\n    await graph.updateNode('file', existing.id, {\n      changeCount: (data.changeCount ?? 0) + 1,\n      lastChanged: now\n    });\n    return (await graph.getNode('file', existing.id)) as FileNode;\n  }\n\n  const data: FileNodeData = {\n    path: filePath,\n    extension: path.extname(filePath),\n    purpose: '',\n    riskLevel: 'medium',\n    whyRisky: null,\n    changeCount: 1,\n    lastChanged: now,\n    incidentCount: 0,\n    createdAt: now\n  };\n\n  return (await graph.addNode('file', data)) as FileNode;\n}\n","export interface DiffFileSummary {\n  filePath: string;\n  added: number;\n  removed: number;\n  functionsModified: string[];\n  riskyPatterns: string[];\n}\n\nexport interface DiffSummary {\n  files: DiffFileSummary[];\n  totalAdded: number;\n  totalRemoved: number;\n  riskyFiles: string[];\n}\n\nconst RISKY_PATTERNS = [/auth/i, /token/i, /password/i, /secret/i, /validate/i, /sanitize/i];\n\nexport function analyzeDiff(diff: string): DiffSummary {\n  const files: DiffFileSummary[] = [];\n  let current: DiffFileSummary | null = null;\n\n  const lines = diff.split('\\n');\n\n  for (const line of lines) {\n    if (line.startsWith('+++ b/')) {\n      const filePath = line.replace('+++ b/', '').trim();\n      current = {\n        filePath,\n        added: 0,\n        removed: 0,\n        functionsModified: [],\n        riskyPatterns: []\n      };\n      files.push(current);\n      continue;\n    }\n\n    if (!current) {\n      continue;\n    }\n\n    if (line.startsWith('@@')) {\n      // Capture function names or signatures in hunk headers\n      const match = line.match(/@@.*?(function\\s+([\\w$]+)|class\\s+([\\w$]+)|([\\w$]+\\s*\\())/i);\n      const fnName = match?.[2] || match?.[3] || match?.[4];\n      if (fnName) {\n        current.functionsModified.push(fnName.replace('(', '').trim());\n      }\n      continue;\n    }\n\n    if (line.startsWith('+') && !line.startsWith('+++')) {\n      current.added += 1;\n      markRisk(line, current);\n    } else if (line.startsWith('-') && !line.startsWith('---')) {\n      current.removed += 1;\n      markRisk(line, current);\n    }\n  }\n\n  const totalAdded = files.reduce((acc, f) => acc + f.added, 0);\n  const totalRemoved = files.reduce((acc, f) => acc + f.removed, 0);\n  const riskyFiles = files.filter((f) => f.riskyPatterns.length > 0).map((f) => f.filePath);\n\n  return {\n    files,\n    totalAdded,\n    totalRemoved,\n    riskyFiles\n  };\n}\n\nfunction markRisk(line: string, file: DiffFileSummary): void {\n  for (const pattern of RISKY_PATTERNS) {\n    if (pattern.test(line)) {\n      const label = pattern.toString();\n      if (!file.riskyPatterns.includes(label)) {\n        file.riskyPatterns.push(label);\n      }\n    }\n  }\n}\n","import * as path from 'node:path';\n\nimport type { RiskLevel } from '../types/index.js';\nimport type { PatternNode } from '../context/types.js';\nimport type { ContextGraph } from '../context/graph.js';\nimport type { FileNodeData, IncidentNode } from '../context/nodes.js';\n\nexport interface FileRiskResult {\n  file: string;\n  score: number;\n  level: RiskLevel;\n  reasons: string[];\n  incidents: IncidentNode[];\n  matchedPatterns: PatternNode[];\n}\n\nexport interface ChangeRiskResult {\n  files: FileRiskResult[];\n  overall: RiskLevel;\n  score: number;\n  shouldEscalate: boolean;\n}\n\nconst BASE_RISK: Record<RiskLevel, number> = {\n  low: 10,\n  medium: 35,\n  high: 65,\n  critical: 85\n};\n\nconst SENSITIVE_PATHS: { pattern: RegExp; weight: number; reason: string }[] = [\n  { pattern: /auth|login|token|session/i, weight: 20, reason: 'touches authentication' },\n  { pattern: /payment|billing|stripe|paypal|checkout/i, weight: 25, reason: 'touches payments' },\n  { pattern: /secret|credential|env|config\\/security/i, weight: 15, reason: 'touches secrets/security config' },\n];\n\nfunction levelFromScore(score: number): RiskLevel {\n  if (score >= 90) return 'critical';\n  if (score >= 65) return 'high';\n  if (score >= 40) return 'medium';\n  return 'low';\n}\n\nexport async function scoreFile(\n  graph: ContextGraph,\n  filePath: string,\n  matchedPatterns: PatternNode[] = []\n): Promise<FileRiskResult> {\n  const reasons: string[] = [];\n  const normalized = path.resolve(graph.projectRoot, filePath);\n  const node = await graph.getNode('file', normalized);\n  const incidents = await graph.getIncidentsForFile(filePath);\n\n  let score = 10;\n  const data = node?.data as FileNodeData | undefined;\n\n  if (data) {\n    score = BASE_RISK[data.riskLevel] ?? score;\n    reasons.push(`baseline ${data.riskLevel}`);\n\n    if (data.incidentCount > 0) {\n      const incBoost = Math.min(data.incidentCount * 12, 36);\n      score += incBoost;\n      reasons.push(`historical incidents (+${incBoost})`);\n    }\n\n    if (data.changeCount > 5) {\n      const changeBoost = Math.min((data.changeCount - 5) * 2, 12);\n      score += changeBoost;\n      reasons.push(`frequent changes (+${changeBoost})`);\n    }\n\n    if (data.lastChanged) {\n      const lastChanged = new Date(data.lastChanged).getTime();\n      const days = (Date.now() - lastChanged) / (1000 * 60 * 60 * 24);\n      if (days > 60 && data.incidentCount === 0) {\n        score -= 5;\n        reasons.push('stable for 60d (-5)');\n      }\n    }\n  }\n\n  for (const { pattern, weight, reason } of SENSITIVE_PATHS) {\n    if (pattern.test(filePath)) {\n      score += weight;\n      reasons.push(reason);\n    }\n  }\n\n  if (matchedPatterns.length > 0) {\n    const patternBoost = Math.min(\n      matchedPatterns.reduce((acc, p) => acc + (p.data.confidence ?? 50) / 10, 0),\n      20\n    );\n    score += patternBoost;\n    reasons.push(`pattern match (+${Math.round(patternBoost)})`);\n  }\n\n  if (incidents.length > 0) {\n    const timestamps = incidents\n      .map((i) => new Date(i.data.timestamp).getTime())\n      .sort((a, b) => b - a);\n    const recent = timestamps[0]!;\n    const daysSince = (Date.now() - recent) / (1000 * 60 * 60 * 24);\n    if (daysSince > 90) {\n      score -= 5;\n      reasons.push('no incidents in 90d (-5)');\n    } else {\n      score += 8;\n      reasons.push('recent incident (+8)');\n    }\n  }\n\n  const level = levelFromScore(score);\n  return {\n    file: filePath,\n    score,\n    level,\n    reasons,\n    incidents,\n    matchedPatterns\n  };\n}\n\nexport async function scoreChangeSet(\n  graph: ContextGraph,\n  files: string[],\n  patternMatches: Record<string, PatternNode[]> = {}\n): Promise<ChangeRiskResult> {\n  const fileResults: FileRiskResult[] = [];\n\n  for (const file of files) {\n    const patterns = patternMatches[file] ?? [];\n    fileResults.push(await scoreFile(graph, file, patterns));\n  }\n\n  // Aggregate: use max file score, but boost if many files touched\n  const maxScore = Math.max(...fileResults.map((f) => f.score), 10);\n  const spreadBoost = files.length > 5 ? Math.min((files.length - 5) * 2, 10) : 0;\n  const overallScore = maxScore + spreadBoost;\n  const overall = levelFromScore(overallScore);\n\n  const shouldEscalate = overall === 'critical' || overall === 'high';\n\n  return {\n    files: fileResults,\n    overall,\n    score: overallScore,\n    shouldEscalate\n  };\n}\n","import { ContextGraph } from '../context/graph.js';\nimport type { PatternNode } from '../context/nodes.js';\n\nexport interface PatternMatch {\n  file: string;\n  pattern: PatternNode;\n  confidence: number;\n  isAntiPattern: boolean;\n}\n\nexport async function matchPatternsForFiles(\n  graph: ContextGraph,\n  files: string[]\n): Promise<{ matches: PatternMatch[]; byFile: Record<string, PatternNode[]> }> {\n  const matches: PatternMatch[] = [];\n  const byFile: Record<string, PatternNode[]> = {};\n\n  for (const file of files) {\n    const patterns = await graph.getPatternsForFile(file);\n    if (patterns.length === 0) continue;\n\n    byFile[file] = patterns;\n\n    for (const pattern of patterns) {\n      matches.push({\n        file,\n        pattern,\n        confidence: pattern.data.confidence,\n        isAntiPattern: pattern.data.isAntiPattern\n      });\n    }\n  }\n\n  return { matches, byFile };\n}\n","import type { CodeContext, Agent, TriagingConfig } from '../types/index.js';\n\nexport class Triager {\n  constructor(_config?: Partial<TriagingConfig>) {\n    // Config no longer used - Trie is now purely a decision ledger\n  }\n\n  /**\n   * Triage a change to select appropriate agents\n   * Note: Skills/agents have been removed - Trie is now purely a decision ledger\n   */\n  async triage(\n    _context: CodeContext,\n    _forceAgents?: string[]\n  ): Promise<Agent[]> {\n    // No skills to triage - return empty array\n    // Trie now focuses on decision ledger and learning from incidents\n    return [];\n  }\n\n  /**\n   * Get all available agent names (deprecated - returns empty array)\n   */\n  getAvailableAgents(): string[] {\n    return [];\n  }\n}\n","import { Worker } from 'worker_threads';\nimport { cpus } from 'os';\nimport { existsSync } from 'fs';\nimport { fileURLToPath } from 'url';\nimport type { Agent, AgentResult, ScanContext } from '../types/index.js';\nimport { StreamingManager } from './streaming.js';\nimport { CacheManager } from './cache-manager.js';\nimport { isInteractiveMode } from './progress.js';\n\ninterface ParallelTask {\n  agent: Agent;\n  files: string[];\n  context: ScanContext;\n  priority: number;\n  timeoutMs: number;\n}\n\ninterface ParallelResult {\n  agent: string;\n  result: AgentResult;\n  fromCache: boolean;\n  executionTime: number;\n}\n\n/**\n * Parallel execution engine for Trie agents\n *\n * Features:\n * - True parallel execution using worker threads\n * - Intelligent scheduling based on agent priority\n * - Result caching and cache-aware scheduling\n * - Real-time progress streaming\n * - Dynamic resource management\n */\nexport class ParallelExecutor {\n  private maxWorkers: number;\n  private cache: CacheManager | null;\n  private streaming?: StreamingManager;\n  private activeWorkers: Set<Worker> = new Set();\n  private cacheEnabled: boolean = true;\n  private useWorkerThreads: boolean = false;\n  private workerAvailable: boolean | null = null;\n  private warnedWorkerFallback: boolean = false;\n\n  constructor(\n    cacheManager: CacheManager | null,\n    maxWorkers: number = Math.max(2, Math.min(cpus().length - 1, 8)),\n    options?: { cacheEnabled?: boolean; useWorkerThreads?: boolean }\n  ) {\n    this.maxWorkers = maxWorkers;\n    this.cache = cacheManager;\n    this.cacheEnabled = options?.cacheEnabled ?? true;\n    this.useWorkerThreads = options?.useWorkerThreads ?? false;\n  }\n\n  /**\n   * Set streaming manager for real-time updates\n   */\n  setStreaming(streaming: StreamingManager): void {\n    this.streaming = streaming;\n  }\n\n  /**\n   * Execute agents in parallel with intelligent scheduling\n   */\n  async executeAgents(\n    agents: Agent[],\n    files: string[],\n    context: ScanContext\n  ): Promise<Map<string, AgentResult>> {\n    if (agents.length === 0) {\n      return new Map();\n    }\n\n    // Initialize streaming\n    if (this.streaming && this.streaming.getProgress().totalFiles === 0) {\n      this.streaming.startScan(files.length);\n    }\n\n    // Check cache for existing results\n    const cacheResults = new Map<string, AgentResult>();\n    const uncachedTasks: ParallelTask[] = [];\n\n    for (const agent of agents) {\n      const cached = await this.checkAgentCache(agent, files);\n      if (cached) {\n        cacheResults.set(agent.name, cached);\n        this.streaming?.completeAgent(agent.name, cached.issues);\n      } else {\n        uncachedTasks.push({\n          agent,\n          files,\n          context,\n          priority: agent.priority?.tier || 2,\n          timeoutMs: context?.config?.timeoutMs || 120000\n        });\n      }\n    }\n\n    // Sort tasks by priority (tier 1 = highest priority)\n    uncachedTasks.sort((a, b) => a.priority - b.priority);\n\n    // Execute uncached tasks in parallel\n    const parallelResults = await this.executeTasksParallel(uncachedTasks);\n\n    // Cache new results\n    await this.cacheResults(parallelResults);\n\n    // Combine cached and new results\n    const allResults = new Map<string, AgentResult>();\n\n    // Add cached results\n    for (const [agent, result] of Array.from(cacheResults.entries())) {\n      allResults.set(agent, result);\n    }\n\n    // Add new results\n    for (const result of parallelResults) {\n      allResults.set(result.agent, result.result);\n    }\n\n    // Complete streaming\n    const allIssues = Array.from(allResults.values()).flatMap(r => r.issues);\n    this.streaming?.completeScan(allIssues);\n\n    return allResults;\n  }\n\n  /**\n   * Check if agent has cached results for given files\n   */\n  private async checkAgentCache(agent: Agent, files: string[]): Promise<AgentResult | null> {\n    if (!this.cacheEnabled || !this.cache) {\n      return null;\n    }\n\n    const cachedIssues = await this.cache.getCachedBatch(files, agent.name);\n\n    // Only use cache if we have results for ALL files\n    if (cachedIssues.size === files.length) {\n      const allIssues = Array.from(cachedIssues.values()).flat();\n      return {\n        agent: agent.name,\n        issues: allIssues,\n        executionTime: 0, // Cached\n        success: true,\n        metadata: {\n          filesAnalyzed: files.length,\n          linesAnalyzed: 0\n        }\n      };\n    }\n\n    return null;\n  }\n\n  /**\n   * Execute tasks in parallel batches\n   */\n  private async executeTasksParallel(tasks: ParallelTask[]): Promise<ParallelResult[]> {\n    if (tasks.length === 0) {\n      return [];\n    }\n\n    const results: ParallelResult[] = [];\n    const batches = this.createBatches(tasks, this.maxWorkers);\n\n    for (const batch of batches) {\n      const batchResults = await Promise.all(\n        batch.map(task => this.executeTask(task))\n      );\n      results.push(...batchResults);\n    }\n\n    return results;\n  }\n\n  /**\n   * Create batches for parallel execution\n   */\n  private createBatches(tasks: ParallelTask[], batchSize: number): ParallelTask[][] {\n    const batches: ParallelTask[][] = [];\n\n    for (let i = 0; i < tasks.length; i += batchSize) {\n      batches.push(tasks.slice(i, i + batchSize));\n    }\n\n    return batches;\n  }\n\n  /**\n   * Execute a single task\n   */\n  private async executeTask(task: ParallelTask): Promise<ParallelResult> {\n    const startTime = Date.now();\n\n    this.streaming?.startAgent(task.agent.name);\n\n    try {\n      const result = this.canUseWorkers()\n        ? await this.executeTaskInWorker(task)\n        : await task.agent.scan(task.files, task.context);\n      const executionTime = Date.now() - startTime;\n\n      this.streaming?.completeAgent(task.agent.name, result.issues);\n\n      return {\n        agent: task.agent.name,\n        result,\n        fromCache: false,\n        executionTime\n      };\n    } catch (error) {\n      const executionTime = Date.now() - startTime;\n      const errorMessage = error instanceof Error ? error.message : String(error);\n\n      this.streaming?.reportError(new Error(errorMessage), `Agent: ${task.agent.name}`);\n\n      return {\n        agent: task.agent.name,\n        result: {\n          agent: task.agent.name,\n          issues: [],\n          executionTime,\n          success: false,\n          error: errorMessage\n        },\n        fromCache: false,\n        executionTime\n      };\n    }\n  }\n\n  private canUseWorkers(): boolean {\n    if (!this.useWorkerThreads) {\n      return false;\n    }\n    if (this.workerAvailable !== null) {\n      return this.workerAvailable;\n    }\n    const workerUrl = this.getWorkerUrl();\n    this.workerAvailable = existsSync(fileURLToPath(workerUrl));\n    if (!this.workerAvailable && !this.warnedWorkerFallback && !isInteractiveMode()) {\n      console.error('Worker threads unavailable; falling back to in-process agents.');\n      this.warnedWorkerFallback = true;\n    }\n    return this.workerAvailable;\n  }\n\n  private getWorkerUrl(): URL {\n    const distDir = new URL('.', import.meta.url);\n    return new URL('workers/agent-worker.js', distDir);\n  }\n\n  private async executeTaskInWorker(task: ParallelTask): Promise<AgentResult> {\n    // Use dirname to get the dist folder, then resolve to workers subfolder\n    // This works whether the code is bundled into chunks or in utils/ folder\n    const workerUrl = this.getWorkerUrl();\n\n    return new Promise((resolve, reject) => {\n      const worker = new Worker(workerUrl, {\n        workerData: {\n          agentName: task.agent.name,\n          files: task.files,\n          context: task.context\n        }\n      } as ConstructorParameters<typeof Worker>[1]);\n\n      this.activeWorkers.add(worker);\n\n      const timeout = setTimeout(() => {\n        worker.terminate().catch(() => undefined);\n        reject(new Error(`Agent ${task.agent.name} timed out after ${task.timeoutMs}ms`));\n      }, task.timeoutMs);\n\n      worker.on('message', (message) => {\n        if (message?.type === 'result') {\n          clearTimeout(timeout);\n          resolve(message.result as AgentResult);\n        } else if (message?.type === 'error') {\n          clearTimeout(timeout);\n          reject(new Error(message.error));\n        }\n      });\n\n      worker.on('error', (error) => {\n        clearTimeout(timeout);\n        reject(error);\n      });\n\n      worker.on('exit', (code) => {\n        this.activeWorkers.delete(worker);\n        if (code !== 0) {\n          clearTimeout(timeout);\n          reject(new Error(`Worker stopped with exit code ${code}`));\n        }\n      });\n    });\n  }\n\n  /**\n   * Cache results for future use\n   */\n  private async cacheResults(results: ParallelResult[]): Promise<void> {\n    if (!this.cacheEnabled || !this.cache) {\n      return;\n    }\n\n    const cachePromises = results\n      .filter(r => r.result.success && !r.fromCache)\n      .map(r => {\n        const issuesByFile = this.groupIssuesByFile(r.result.issues);\n        const perFilePromises = Object.entries(issuesByFile).map(([file, issues]) =>\n          this.cache!.setCached(file, r.agent, issues, r.executionTime)\n        );\n        return Promise.all(perFilePromises);\n      });\n\n    await Promise.allSettled(cachePromises);\n  }\n\n  /**\n   * Cleanup resources\n   */\n  async cleanup(): Promise<void> {\n    // Terminate any active workers\n    const terminationPromises = Array.from(this.activeWorkers).map(worker =>\n      worker.terminate()\n    );\n\n    await Promise.allSettled(terminationPromises);\n    this.activeWorkers.clear();\n  }\n\n  private groupIssuesByFile(issues: AgentResult['issues']): Record<string, AgentResult['issues']> {\n    const grouped: Record<string, AgentResult['issues']> = {};\n\n    for (const issue of issues) {\n      if (!grouped[issue.file]) {\n        grouped[issue.file] = [];\n      }\n      grouped[issue.file]!.push(issue);\n    }\n\n    return grouped;\n  }\n}\n\n/**\n * Smart agent prioritization based on dependencies and execution characteristics\n */\nexport function prioritizeAgents(agents: Agent[]): Agent[] {\n  const prioritized = [...agents];\n\n  // Sort by priority tier, then by estimated execution time\n  prioritized.sort((a, b) => {\n    const aTier = a.priority?.tier || 2;\n    const bTier = b.priority?.tier || 2;\n\n    if (aTier !== bTier) {\n      return aTier - bTier; // Lower tier = higher priority\n    }\n\n    // Within same tier, prioritize faster agents\n    const aTime = a.priority?.estimatedTimeMs || 1000;\n    const bTime = b.priority?.estimatedTimeMs || 1000;\n\n    return aTime - bTime;\n  });\n\n  return prioritized;\n}\n\n/**\n * Calculate optimal concurrency based on system resources and agent characteristics\n */\nexport function calculateOptimalConcurrency(): number {\n  const numCPUs = cpus().length;\n  const availableMemoryGB = process.memoryUsage().rss / 1024 / 1024 / 1024;\n\n  // Conservative concurrency for stability\n  let optimal = Math.max(2, Math.min(numCPUs - 1, 8));\n\n  // Reduce concurrency if low memory\n  if (availableMemoryGB < 2) {\n    optimal = Math.max(2, Math.floor(optimal / 2));\n  }\n\n  // Increase slightly for systems with lots of CPU cores\n  if (numCPUs > 8) {\n    optimal = Math.min(optimal + 2, 12);\n  }\n\n  return optimal;\n}","import { readFile, writeFile, mkdir, stat } from 'fs/promises';\nimport { join } from 'path';\nimport { createHash } from 'crypto';\nimport type { Issue } from '../types/index.js';\nimport { isInteractiveMode } from './progress.js';\nimport { getTrieDirectory } from './workspace.js';\n\ninterface CacheEntry {\n  version: string;\n  timestamp: number;\n  fileHash: string;\n  fileSize: number;\n  agent: string;\n  issues: Issue[];\n  executionTime: number;\n}\n\ninterface CacheIndex {\n  version: string;\n  created: number;\n  entries: Record<string, CacheEntry>;\n}\n\nexport class CacheManager {\n  private cacheDir: string;\n  private indexPath: string;\n  private readonly VERSION = '1.0.0';\n  private readonly MAX_AGE_MS = 24 * 60 * 60 * 1000; // 24 hours\n  private readonly MAX_ENTRIES = 1000;\n\n  constructor(baseDir: string) {\n    this.cacheDir = join(getTrieDirectory(baseDir), 'cache');\n    this.indexPath = join(this.cacheDir, 'index.json');\n  }\n\n  /**\n   * Generate cache key for a file and agent combination\n   */\n  private generateCacheKey(filePath: string, agent: string, fileHash: string): string {\n    const key = `${filePath}:${agent}:${fileHash}`;\n    return createHash('sha256').update(key).digest('hex').slice(0, 16);\n  }\n\n  /**\n   * Get file hash for cache validation\n   */\n  private async getFileHash(filePath: string): Promise<{ hash: string; size: number; mtime: number }> {\n    try {\n      const content = await readFile(filePath, 'utf-8');\n      const stats = await stat(filePath);\n      const hash = createHash('sha256').update(content).digest('hex').slice(0, 16);\n      return {\n        hash,\n        size: stats.size,\n        mtime: stats.mtime.getTime()\n      };\n    } catch {\n      return { hash: '', size: 0, mtime: 0 };\n    }\n  }\n\n  /**\n   * Load cache index\n   */\n  private async loadIndex(): Promise<CacheIndex> {\n    try {\n      const content = await readFile(this.indexPath, 'utf-8');\n      return JSON.parse(content);\n    } catch {\n      return {\n        version: this.VERSION,\n        created: Date.now(),\n        entries: {}\n      };\n    }\n  }\n\n  /**\n   * Save cache index\n   */\n  private async saveIndex(index: CacheIndex): Promise<void> {\n    try {\n      await mkdir(this.cacheDir, { recursive: true });\n      await writeFile(this.indexPath, JSON.stringify(index, null, 2));\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to save cache index:', error);\n      }\n    }\n  }\n\n  /**\n   * Clean up expired entries\n   */\n  private cleanupExpired(index: CacheIndex): CacheIndex {\n    const now = Date.now();\n    const validEntries: Record<string, CacheEntry> = {};\n\n    for (const [key, entry] of Object.entries(index.entries)) {\n      if (now - entry.timestamp < this.MAX_AGE_MS) {\n        validEntries[key] = entry;\n      }\n    }\n\n    // If still too many, keep the most recent ones\n    const entries = Object.entries(validEntries);\n    if (entries.length > this.MAX_ENTRIES) {\n      entries.sort((a, b) => b[1].timestamp - a[1].timestamp);\n      const limited = entries.slice(0, this.MAX_ENTRIES);\n      return {\n        ...index,\n        entries: Object.fromEntries(limited)\n      };\n    }\n\n    return {\n      ...index,\n      entries: validEntries\n    };\n  }\n\n  /**\n   * Get cached result for a file and agent\n   * \n   * Cache automatically invalidates when files change:\n   * - Cache key includes file hash: hash(filePath:agent:fileHash)\n   * - When file changes, hash changes, so cache key changes\n   * - Old cache entry won't be found (different key)\n   * - File is automatically rescanned\n   * \n   * This means cache auto-updates when Claude fixes code - no manual invalidation needed!\n   */\n  async getCached(filePath: string, agent: string): Promise<Issue[] | null> {\n    try {\n      const { hash, size: _size, mtime: _mtime } = await this.getFileHash(filePath);\n      if (!hash) return null;\n\n      const index = await this.loadIndex();\n      const cacheKey = this.generateCacheKey(filePath, agent, hash);\n      const entry = index.entries[cacheKey];\n\n      if (!entry) return null;\n\n      // Validate entry is still fresh\n      // Double-check hash matches (defense in depth)\n      const isValid = entry.fileHash === hash &&\n                     entry.version === this.VERSION &&\n                     (Date.now() - entry.timestamp) < this.MAX_AGE_MS;\n\n      if (!isValid) {\n        delete index.entries[cacheKey];\n        await this.saveIndex(index);\n        return null;\n      }\n\n      return entry.issues;\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Cache result for a file and agent\n   */\n  async setCached(\n    filePath: string,\n    agent: string,\n    issues: Issue[],\n    executionTime: number\n  ): Promise<void> {\n    try {\n      const { hash, size } = await this.getFileHash(filePath);\n      if (!hash) return;\n\n      const index = await this.loadIndex();\n      const cacheKey = this.generateCacheKey(filePath, agent, hash);\n\n      index.entries[cacheKey] = {\n        version: this.VERSION,\n        timestamp: Date.now(),\n        fileHash: hash,\n        fileSize: size,\n        agent,\n        issues,\n        executionTime\n      };\n\n      // Clean up old entries\n      const cleanedIndex = this.cleanupExpired(index);\n      await this.saveIndex(cleanedIndex);\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to cache result:', error);\n      }\n    }\n  }\n\n  /**\n   * Check if multiple files have cached results\n   */\n  async getCachedBatch(files: string[], agent: string): Promise<Map<string, Issue[]>> {\n    const results = new Map<string, Issue[]>();\n\n    await Promise.all(\n      files.map(async (file) => {\n        const cached = await this.getCached(file, agent);\n        if (cached) {\n          results.set(file, cached);\n        }\n      })\n    );\n\n    return results;\n  }\n\n  /**\n   * Get cache statistics\n   */\n  async getStats(): Promise<{\n    totalEntries: number;\n    totalSizeKB: number;\n    oldestEntry: number | null;\n    newestEntry: number | null;\n    agents: string[];\n    hitRate?: number;\n  }> {\n    try {\n      const index = await this.loadIndex();\n      const entries = Object.values(index.entries);\n\n      const totalSizeKB = entries.reduce((acc, entry) => acc + entry.fileSize, 0) / 1024;\n      const timestamps = entries.map(e => e.timestamp);\n      const agents = Array.from(new Set(entries.map(e => e.agent)));\n\n      return {\n        totalEntries: entries.length,\n        totalSizeKB: Math.round(totalSizeKB),\n        oldestEntry: timestamps.length > 0 ? Math.min(...timestamps) : null,\n        newestEntry: timestamps.length > 0 ? Math.max(...timestamps) : null,\n        agents\n      };\n    } catch {\n      return {\n        totalEntries: 0,\n        totalSizeKB: 0,\n        oldestEntry: null,\n        newestEntry: null,\n        agents: []\n      };\n    }\n  }\n\n  /**\n   * Clean up stale cache entries by verifying file hashes\n   * This removes entries where files have changed or no longer exist\n   * Called periodically to keep cache clean\n   * \n   * Note: Since cache keys are hashed, we can't easily reverse-engineer file paths.\n   * However, when getCached() is called, it naturally invalidates stale entries\n   * by checking if the current file hash matches the cached hash. This method\n   * proactively cleans up entries for known changed files.\n   */\n  async cleanupStaleEntries(filePaths?: string[]): Promise<number> {\n    try {\n      const index = await this.loadIndex();\n      let removedCount = 0;\n      const keysToRemove: string[] = [];\n\n      // If specific files provided, check those files against all cache entries\n      // We can't perfectly match entries to files without storing paths, but we can\n      // try to identify likely matches by checking if regenerating keys matches\n      if (filePaths && filePaths.length > 0) {\n        // Get all unique agents from cache entries\n        const agents = new Set<string>();\n        for (const entry of Object.values(index.entries)) {\n          agents.add(entry.agent);\n        }\n\n        // For each file+agent combination, check if cache entry is stale\n        for (const filePath of filePaths) {\n          try {\n            const { hash: currentHash } = await this.getFileHash(filePath);\n            if (!currentHash) {\n              // File doesn't exist - can't clean up without knowing which entries are for it\n              continue;\n            }\n\n            // Check each agent's potential cache entries for this file\n            for (const agent of Array.from(agents)) {\n              // Check all entries to find ones that might be for this file\n              for (const [key, entry] of Object.entries(index.entries)) {\n                if (entry.agent !== agent) continue;\n                \n                // If entry hash doesn't match current hash, it might be stale\n                if (entry.fileHash !== currentHash) {\n                  // Check if this key was generated with the old hash for this file\n                  const oldKey = this.generateCacheKey(filePath, agent, entry.fileHash);\n                  if (oldKey === key) {\n                    // This entry is for this file but hash doesn't match - stale!\n                    keysToRemove.push(key);\n                    removedCount++;\n                  }\n                }\n              }\n            }\n          } catch {\n            // File doesn't exist or can't be read - skip\n            continue;\n          }\n        }\n      }\n\n      // Remove stale entries (avoid duplicates)\n      const uniqueKeys = Array.from(new Set(keysToRemove));\n      for (const key of uniqueKeys) {\n        delete index.entries[key];\n      }\n\n      if (removedCount > 0) {\n        await this.saveIndex(index);\n      }\n\n      return removedCount;\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to cleanup stale cache entries:', error);\n      }\n      return 0;\n    }\n  }\n\n  /**\n   * Clear all cache\n   */\n  async clear(): Promise<void> {\n    try {\n      const emptyIndex: CacheIndex = {\n        version: this.VERSION,\n        created: Date.now(),\n        entries: {}\n      };\n      await this.saveIndex(emptyIndex);\n    } catch (error) {\n      if (!isInteractiveMode()) {\n        console.warn('Failed to clear cache:', error);\n      }\n    }\n  }\n}","import type { Agent, AgentResult, ScanContext } from '../types/index.js';\nimport { ParallelExecutor, calculateOptimalConcurrency } from '../utils/parallel-executor.js';\nimport { CacheManager } from '../utils/cache-manager.js';\nimport type { StreamingManager } from '../utils/streaming.js';\nimport { isInteractiveMode } from '../utils/progress.js';\n\nexport class Executor {\n  async executeAgents(\n    agents: Agent[],\n    files: string[],\n    context: ScanContext,\n    options?: {\n      streaming?: StreamingManager;\n      parallel?: boolean;\n      cacheEnabled?: boolean;\n      maxConcurrency?: number;\n      useWorkerThreads?: boolean;\n      timeoutMs?: number;\n    }\n  ): Promise<AgentResult[]> {\n    const parallel = options?.parallel ?? true;\n    const cacheEnabled = options?.cacheEnabled ?? true;\n    const maxConcurrency = options?.maxConcurrency ?? calculateOptimalConcurrency();\n    const useWorkerThreads = options?.useWorkerThreads ?? false;\n\n    if (!isInteractiveMode()) {\n      console.error(`Executing ${agents.length} scouts ${parallel ? 'in parallel' : 'sequentially'}...`);\n    }\n\n    if (parallel) {\n      const cacheManager = cacheEnabled ? new CacheManager(context.workingDir) : null;\n      const executor = new ParallelExecutor(cacheManager, maxConcurrency, {\n        cacheEnabled,\n        useWorkerThreads\n      });\n\n      if (options?.streaming) {\n        executor.setStreaming(options.streaming);\n      }\n\n      const results = await executor.executeAgents(agents, files, {\n        ...context,\n        config: { timeoutMs: options?.timeoutMs ?? 120000 }\n      });\n\n      return agents.map(agent => results.get(agent.name)!).filter(Boolean);\n    }\n\n    // Execute scouts in parallel with timeout\n    const promises = agents.map(agent =>\n      this.executeAgentWithTimeout(agent, files, context, options?.timeoutMs ?? 30000)\n    );\n\n    try {\n      const results = await Promise.allSettled(promises);\n      return results.map((result, index) => {\n        if (result.status === 'fulfilled') {\n          if (!isInteractiveMode()) {\n            console.error(`${agents[index]!.name} completed in ${result.value.executionTime}ms`);\n          }\n          return result.value;\n        } else {\n          if (!isInteractiveMode()) {\n            console.error(`${agents[index]!.name} failed:`, result.reason);\n          }\n          return {\n            agent: agents[index]!.name,\n            issues: [],\n            executionTime: 0,\n            success: false,\n            error: result.reason instanceof Error ? 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[];\n\n  const summaryParts: string[] = [];\n  summaryParts.push(`Risk ${reasoning.riskLevel.toUpperCase()} (${reasoning.shouldBlock ? 'block' : 'allow'})`);\n  if (topFile) summaryParts.push(`Most sensitive file: ${topFile.file}`);\n  if (topReasons.length) summaryParts.push(`Top reasons: ${topReasons.join('; ')}`);\n\n  const patterns = reasoning.matchedPatterns;\n  const incidents = reasoning.relevantIncidents;\n\n  const firstPattern = patterns[0];\n  const patternLine = firstPattern\n    ? `Pattern match: ${firstPattern.data.description}`\n    : 'No known risky patterns matched.';\n\n  const incidentLine = incidents[0]\n    ? `Relevant prior incident: ${incidents[0].data.description} (${incidents[0].data.severity})`\n    : 'No prior incidents linked to these files.';\n\n  const howBad = [\n    `Overall risk is ${reasoning.riskLevel}.`,\n    reasoning.shouldBlock ? 'This is likely to break things or violate policy if pushed without review.' : 'This is unlikely to cause major issues if you follow normal review/testing.',\n    incidentLine,\n  ].join(' ');\n\n  const whatToDo = [\n    reasoning.recommendation,\n    patterns.length ? `Double-check the pattern(s): ${patterns.slice(0, 2).map((p) => p.data.description).join(' | ')}.` : '',\n  ].filter(Boolean).join(' ');\n\n  return {\n    summary: summaryParts.join(' — '),\n    whatIFound: [patternLine, `Incidents considered: ${incidents.length}. Patterns considered: ${patterns.length}.`].join(' '),\n    howBad,\n    whatToDo,\n    original: reasoning,\n  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package/dist/{chunk-XUGUKSKO.js → chunk-FNZPMR62.js}

@@ -1,12 +1,15 @@
 import {
   getTrieDirectory
-} from "./chunk-7F2R2ITA.js";
+} from "./chunk-VVITXIHN.js";
+import {
+  __require
+} from "./chunk-DGUM43GV.js";
 
 // src/storage/tiered-storage.ts
 import { writeFile, mkdir } from "fs/promises";
 import { join } from "path";
 import { createHash } from "crypto";
-import Database from "better-sqlite3";
+var Database = __require("better-sqlite3");
 var TieredStorage = class {
   workDir;
   hotCache = /* @__PURE__ */ new Map();
@@ -596,4 +599,4 @@ export {
   TieredStorage,
   getStorage
 };
-//# sourceMappingURL=chunk-XUGUKSKO.js.map
+//# sourceMappingURL=chunk-FNZPMR62.js.map