@triedotdev/mcp 1.0.149 → 1.0.154

package/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Trie Team
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

@@ -1,48 +1,59 @@
-# Trie: A trainable AI agent with cryptographic governance and portable context
+# Trie: A trainable AI agent with a cryptographic governance ledger and portable context
 
 
-**The ledger that keeps your work compliant when agents and humans ship together.**
+**The ledger that keeps agents and humans aligned when shipping together.**
 
 [![Download Workspace](https://img.shields.io/badge/Download-Trie%20Workspace-blue)](https://www.trie.dev) [![Follow on X](https://img.shields.io/badge/Follow-@louiskishfy-1DA1F2?logo=x)](https://x.com/louiskishfy)
 
 ## What Trie Does
 
-Trie is governance for teams where agents and humans ship together. Every decision, direction change, and tradeoff gets recorded in a cryptographic ledger that every contributor—human or agent—reads from and writes to, across every tool in the stack.
+Trie is governance for teams where agents and humans ship together. Every decision, direction change, and tradeoff gets recorded in a governance ledger that every contributor—human or agent—reads from and writes to, across every tool in the stack.
 
 - **Autonomous Operation**: Run `trie watch` and the agent monitors your codebase 24/7
 - **Intelligent Extraction**: Automatically extracts decisions, facts, blockers from every change
-- **Cryptographic governance ledger**: Tamper-evident, append-only chain of blocks—the shared memory that travels from Cursor/Claude Code → CLI → CI/CD
+- **Governance ledger**: Tamper-evident chain with digital signatures—the shared memory that travels from Cursor/Claude Code → CLI → CI/CD
 - **Predictive Intelligence**: `trie gotcha` queries the ledger to predict problems before they happen
 - **Continuous Learning**: Feed it incidents with `trie tell`, teach it patterns with your history
 
 The work stays coherent not because someone held it together, but because the ledger did. When any contributor flags a direction change, the ledger surfaces the relevant history instantly. When an agent acts, it does so with full context of what was decided before and why.
 
-### The Context-Across-Tools Problem
+### The Agent Coordination Problem
 
-**The problem**: When work happens across Cursor, Claude Code, VS Code, the terminal, and more, context fragments. An agent makes a decision in one tool; a human forgets it in another. Accountability and context diffuse across tools, models, and people until they belong to no one.
+**The problem**: When agents and humans ship code together across Cursor, Claude Code, VS Code, and CI/CD, who's accountable for what? An agent makes a decision in one tool; a human modifies it in another; a second agent undoes both. Without a shared record, coordination becomes chaos.
 
-**The solution**: Trie stores every decision, incident, fix, and tradeoff in a cryptographic governance ledger—a tamper-evident, append-only chain of blocks that lives in your `.trie/` folder and syncs across your team. Every tool reads from the same source of truth. The ledger surfaces the relevant history instantly in each contributor's native tool. No more context loss. No more conflicting memories.
+**The solution**: Trie's governance ledger provides a shared source of truth that both agents and humans can trust. Every decision, every incident, every fix gets recorded with cryptographic signatures proving who (or what) made each change. When an agent queries the ledger, it gets the full context. When you review changes, you see the reasoning. When something breaks, the ledger shows you exactly what led there.
 
-## Why It Matters
+Think of it as **double-entry bookkeeping for code decisions**—not blockchain-level immutability, but tamper-evident accountability that works with Git and your existing workflow.
 
-Code is solved. The bottleneck isn't building—it's deciding what to build and whether the change aligns with how you got here.
+## Why It Matters for Agent Collaboration
 
-When agents and non-technical contributors can ship production changes, coordination tools built to manage engineering capacity break down. Linear tells you what's in the queue. GitHub tells you what changed. Neither tells you whether the change aligns with the decisions that came before.
+When agents can ship production changes, you need governance that works for both humans and AI:
 
-Every bug you fix teaches the ledger a pattern that protects all your projects. Every incident you report becomes institutional knowledge that travels with your code. Every decision you make—and the tradeoffs you considered—gets extracted and stored automatically.
+**Traditional tools fall short:**
+- Linear tracks tasks, not decisions or reasoning
+- GitHub shows changes, not why they were made
+- Slack/Discord: context vanishes in chat history
+- No tool tells you if an agent's change conflicts with yesterday's decision
 
-The result: faster development with fewer production fires, because the ledger gets smarter every time something breaks—and every agent and human on the team benefits.
+**Trie's ledger provides:**
+- **Tamper-evident history**: Ed25519 signatures detect if entries are modified
+- **Automatic recording**: Agents and humans write to the same ledger
+- **Cross-tool context**: Works in Cursor, CLI, CI/CD, MCP servers
+- **Accountability**: See who (human or agent) made each decision and when
+- **Pattern learning**: Every incident makes the system smarter
+
+The ledger ensures nothing is lost. When an agent queries it, answers come with full provenance. When you review changes, you see the reasoning trail. When something breaks, the audit trail is already there.
 
 ### How the Agent Works
 
 1. **`trie watch`** - Start the agent, it monitors your codebase autonomously
 2. **Agent Extracts** - Every file change → extract decisions, facts, blockers
-3. **Agent Stores** - Builds decision ledger with rich metadata and tag expansion
+3. **Agent Stores** - Builds decision ledger with signatures and metadata
 4. **`trie gotcha`** - Agent queries ledger to predict problems in your current changes
 5. **`trie tell`** - Feed agent incidents to improve its predictions
 6. **Agent Learns** - Gets better at predicting what matters in YOUR codebase
 
-Your decisions persist across tools. Your edge cases don't get forgotten. The ledger keeps agents and humans compliant—so you ship the right thing every time.
+Your decisions persist across tools. Your edge cases don't get forgotten. The ledger keeps agents and humans aligned—so you ship the right thing every time.
 
 ## Quick Start
 
@@ -91,13 +102,22 @@ Tools like Cursor Bugbot flag issues—but flagging doesn't help you avoid simil
 
 ## Key Features
 
+### Built for Agent + Human Collaboration
+
+- **Shared governance ledger** - Single source of truth that agents and humans both read from and write to
+- **Digital signatures** - Ed25519 signatures prove who (human or agent) created each entry, automatic and zero-config
+- **Accountability trail** - See exactly what decisions agents made and when, verify authenticity
+- **Cross-tool context** - Works in Cursor, Claude Code, CLI, CI/CD—same ledger everywhere
+- **Tamper detection** - Signatures and Git history make modifications visible
+- **No coordination needed** - Agents and humans write concurrently; Git handles conflicts
+
 ### Governance That Scales
 
-- **Cryptographic ledger** - Tamper-evident, append-only chain of blocks; every tool reads from the same source of truth
-- **True immutability** - Ledger entries never deleted, only marked as corrected; full audit trail for compliance
-- **Decision memory** - Captures architectural choices, tradeoffs, and context across Cursor, Claude, VS Code, CLI, and CI/CD
-- **Judgment artifacts** - Not just what shipped, but why, what was considered, and who decided
-- **Git-based storage** - Your project's memory travels with your code in `.trie/` folder
+- **Tamper-evident ledger** - Append-only chain with cryptographic signatures (not blockchain, think double-entry bookkeeping)
+- **Correction pattern** - Entries never deleted, only marked as corrected with full audit trail
+- **Decision memory** - Captures architectural choices, tradeoffs, and context across all tools
+- **Judgment artifacts** - Not just what shipped, but why, what was considered, and who (or what) decided
+- **Git integration** - Auto-commits ledger changes; distributed backup via Git history
 
 ### Intelligence That Compounds
 
@@ -109,7 +129,7 @@ Tools like Cursor Bugbot flag issues—but flagging doesn't help you avoid simil
 
 ### Integration Built for Speed
 
-- **Multiple interfaces** - CLI, MCP tools for Claude/Cursor, visual dashboards, Slack notifications
+- **Multiple interfaces** - CLI, MCP tools for Claude/Cursor, visual dashboards
 - **Git hooks** - Automatic checks before commits and pushes
 - **Watch mode** - Real-time monitoring while you code
 - **Fast performance** - Sub-500ms checks, won't slow down your workflow
@@ -161,7 +181,6 @@ your-project/
 ├── src/
 └── .git/
 ```  
-Different machines
 
 ### Decision Memory Across Tools
 
@@ -296,27 +315,55 @@ Edge cases, tradeoffs, and system coherence—Trie handles governance by remembe
 
 ### Goals & Hypotheses
 
-Set improvement goals and test theories:
+Set improvement goals and test theories. **Goals are actively enforced in real-time** as you code:
 
 ```bash
-# Set a goal
-trie goal add "Reduce checkout bugs by 50%"
+# Set a goal - any custom rule you want enforced
+trie goal add "No console.log statements in production"
+trie goal add "All API endpoints must have rate limiting"
+trie goal add "We never truncate text in UI components"
 
 # Add a hypothesis
 trie hypothesis add "Code reviews reduce bug rate"
 
-# Trie tracks progress and validates hypotheses over time
+# View progress
+trie goal list
 ```
 
+**How Goal Checking Works:**
+
+When you run `trie watch`, the system actively monitors your code for goal violations using AI-powered analysis:
+
+1. **Custom & Flexible** - Goals can be any quality rule you define (no emojis, no TODOs, security patterns, UI standards, etc.)
+2. **RAG-Based** - Uses semantic understanding, not just keyword matching
+3. **Real-Time** - Checks every file change against ALL active goals
+4. **Smart Caching** - Avoids re-scanning unchanged files
+5. **Cost-Aware** - Token budgets and cooldowns prevent runaway AI costs
+6. **High Confidence** - Only reports violations with strong confidence scores
+
+**Example Goal Violations Detected:**
+- "No emojis in code" → Finds any Unicode emoji anywhere in files
+- "All functions must have JSDoc" → Checks for missing documentation
+- "No inline styles in React" → Detects style attributes in JSX
+- "Every TODO must have a ticket reference" → Validates TODO format
+
+Goals are tracked over time with metrics (violations caught, fixed, progress percentage).
+
 ### Watch Mode
 
-Real-time monitoring with visual dashboard:
+Real-time monitoring with **proactive goal violation detection**:
 
 ```bash
 trie watch
 ```
 
-Interactive panels for goals, memory, analysis activity, and more.
+**Features:**
+- **Interactive dashboard** with goals, memory, analysis activity panels
+- **AI-powered goal checking** - automatically detects violations of your custom rules
+- **Token-aware** - manages AI costs with budgets and cooldowns
+- **Smart prioritization** - focuses on high-risk files first
+- **Caching** - avoids duplicate scans of unchanged files
+- **Real-time nudges** - immediate feedback when violations are detected
 
 Running in Background: To keep trie watch running in the background, use screen or tmux:
 
@@ -796,8 +843,6 @@ trie ledger corrections --entries <entry-id1> <entry-id2>
 - Learn from false positives to improve detection
 - Track correction rates over time
 
-See [docs/LEDGER_CORRECTIONS.md](./docs/LEDGER_CORRECTIONS.md) for detailed usage.
-
 ## CI/CD Integration
 
 ### GitHub Actions
@@ -826,16 +871,40 @@ Trie maintains two complementary memory systems that work together:
 ### 1. Governance Ledger (Primary Product)
 
 **Location:** `.trie/memory/ledger.json`  
-**Purpose:** Cryptographic, tamper-evident record of what was detected and when  
-**Architecture:** Append-only chain of blocks with merkle roots
+**Purpose:** Tamper-evident record of decisions, incidents, and fixes  
+**Architecture:** Append-only chain of blocks with Ed25519 signatures
 
-This is the **core governance layer** - the immutable audit trail that:
+This is the **core governance layer** that:
 - Powers `trie gotcha` predictions
-- Provides compliance and trust
+- Provides accountability for agent and human decisions
+- Uses digital signatures to detect tampering
 - Never deleted, only corrected (see [Ledger Corrections](./docs/LEDGER_CORRECTIONS.md))
-- Syncs across team via `.trie-shared/`
+- Auto-commits to Git for distributed backup
+
+**How it works:**
+- Every entry gets signed with Ed25519 (automatic, zero config)
+- Signatures prove who created each entry and detect modifications
+- Git integration provides distributed backup and history
+- Think: **double-entry bookkeeping**, not blockchain
+
+**Security model:**
+- ✅ **Tamper-evident**: Signatures detect if entries are modified
+- ✅ **Accountability**: See who (human or agent) made each decision
+- ✅ **Git backup**: Distributed history via automatic commits
+- ✅ **Verification**: `trie ledger verify` checks integrity
+- ⚠️ **Not encrypted**: Ledger is plaintext (can add encryption if needed)
+- ⚠️ **Not access-controlled**: Standard file permissions apply
+- ⚠️ **Not deletion-proof**: Can still `rm .trie/` (but Git history remains)
+
+**Real protection comes from:** Git history + Team workflow + PR reviews
+
+Perfect for agent collaboration because:
+- Agents can trust ledger contents (signatures verify authenticity)
+- Humans can audit agent decisions (full provenance trail)
+- Cross-tool context works (same ledger in Cursor, CLI, CI/CD)
+- Conflicts are visible (Git shows competing changes)
 
-The ledger is what makes Trie's governance verifiable and trustworthy. It's the permanent record.
+Learn more: [Signatures & Git Integration](./docs/SIGNATURES_AND_GIT.md)
 
 ### 2. Issue Memory (Query Cache)
 
@@ -897,6 +966,51 @@ trie goal list
 ### Getting Help
 - Issues: [Report bugs and request features](https://x.com/louiskishfy)
 
+## Contributing
+
+We welcome contributions from the community! Whether you're fixing bugs, adding features, improving documentation, or sharing feedback, your contributions help make Trie better for everyone.
+
+### Quick Start for Contributors
+
+1. **Fork and clone** the repository
+2. **Install dependencies**: `npm install`
+3. **Set up environment**: Copy `.env.example` to `.env.local` and add your API keys
+4. **Build the project**: `npm run build`
+5. **Run tests**: `npm test`
+
+### Before Submitting
+
+- Ensure all tests pass (`npm test`)
+- Run type checking (`npm run typecheck`)
+- Follow our code style (`npm run lint`)
+- Update documentation for new features
+- Never commit secrets or API keys
+
+**Read our full [Contributing Guide](CONTRIBUTING.md) for detailed guidelines.**
+
+### Ways to Contribute
+
+- 🐛 **Report bugs** - Open an issue with reproduction steps
+- 💡 **Suggest features** - Share ideas for improvements
+- 📝 **Improve docs** - Fix typos, add examples, clarify instructions
+- 🔧 **Submit PRs** - Fix bugs or implement features
+- 🧪 **Add tests** - Improve test coverage
+- 🔐 **Security** - Report vulnerabilities privately (see [SECURITY.md](SECURITY.md))
+
+### Code of Conduct
+
+Be respectful, inclusive, and professional. We're building this together.
+
+## Security
+
+Please report security vulnerabilities privately. See [SECURITY.md](SECURITY.md) for details.
+
+**Never commit:**
+- API keys or secrets
+- `.env.local` or `.env` files
+- Private signing keys (`.trie/keys/`)
+- Personal configuration
+
 ## License
 
-MIT License
+MIT License - See [LICENSE](LICENSE) for details.

package/dist/{autonomy-config-ZCOSTMPD.js → autonomy-config-RKLZW4XL.js}

@@ -10,9 +10,9 @@ import {
   shouldAutoFix,
   shouldBlockPush,
   trackIssueOccurrence
-} from "./chunk-5KJ4UJOY.js";
-import "./chunk-SH7H3WRU.js";
-import "./chunk-APMV77PU.js";
+} from "./chunk-XD2HKZVB.js";
+import "./chunk-7F2R2ITA.js";
+import "./chunk-JKEEQAG2.js";
 import "./chunk-DGUM43GV.js";
 export {
   clearConfigCache,
@@ -27,4 +27,4 @@ export {
   shouldBlockPush,
   trackIssueOccurrence
 };
-//# sourceMappingURL=autonomy-config-ZCOSTMPD.js.map
+//# sourceMappingURL=autonomy-config-RKLZW4XL.js.map

package/dist/{chat-store-OJLJCJFI.js → chat-store-O3IJ5PMN.js}

@@ -2,14 +2,14 @@ import {
   ChatStore,
   clearChatStores,
   getChatStore
-} from "./chunk-23RJT5WT.js";
+} from "./chunk-3CYMLM35.js";
 import "./chunk-43X6JBEM.js";
-import "./chunk-SH7H3WRU.js";
-import "./chunk-APMV77PU.js";
+import "./chunk-7F2R2ITA.js";
+import "./chunk-JKEEQAG2.js";
 import "./chunk-DGUM43GV.js";
 export {
   ChatStore,
   clearChatStores,
   getChatStore
 };
-//# sourceMappingURL=chat-store-OJLJCJFI.js.map
+//# sourceMappingURL=chat-store-O3IJ5PMN.js.map

package/dist/{chunk-IXO4G4D3.js → chunk-2LAJKFWU.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-6NLHFIYA.js";
 import {
   isInteractiveMode
-} from "./chunk-APMV77PU.js";
+} from "./chunk-JKEEQAG2.js";
 
 // src/trie/vibe-code-signatures.ts
 var VIBE_CODE_PATTERNS = [
@@ -984,4 +984,4 @@ export {
   scanForVibeCodeIssues,
   getVibeCodeStats
 };
-//# sourceMappingURL=chunk-IXO4G4D3.js.map
+//# sourceMappingURL=chunk-2LAJKFWU.js.map

package/dist/{chunk-23RJT5WT.js → chunk-3CYMLM35.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory
-} from "./chunk-SH7H3WRU.js";
+} from "./chunk-7F2R2ITA.js";
 
 // src/cli/dashboard/chat-store.ts
 import { mkdir, readFile, unlink } from "fs/promises";
@@ -345,4 +345,4 @@ export {
   getChatStore,
   clearChatStores
 };
-//# sourceMappingURL=chunk-23RJT5WT.js.map
+//# sourceMappingURL=chunk-3CYMLM35.js.map

package/dist/{chunk-QH77RQB3.js → chunk-4ZAFQEP6.js}

@@ -6,14 +6,14 @@ import {
 } from "./chunk-EFWVF6TI.js";
 import {
   appendIssuesToLedger
-} from "./chunk-ZUEAHFSY.js";
+} from "./chunk-HD5H7YSW.js";
 import {
   atomicWriteJSON
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory,
   getWorkingDirectory
-} from "./chunk-SH7H3WRU.js";
+} from "./chunk-7F2R2ITA.js";
 
 // src/memory/issue-store.ts
 import { mkdir as mkdir2, readFile as readFile2, readdir } from "fs/promises";
@@ -432,8 +432,7 @@ async function storeIssues(issues, project, workDir) {
       project,
       resolved: false,
       resolvedAt: void 0,
-      ledgerBlockHash: void 0
-      // Will be set after ledger write
+      ...issue.ledgerBlockHash && { ledgerBlockHash: issue.ledgerBlockHash }
     };
     stored.push(storedIssue);
   }
@@ -675,7 +674,7 @@ async function getDailyLogs(workDir) {
 async function getIssueLedgerEntry(issue, workDir) {
   if (!issue.ledgerBlockHash) return null;
   const projectDir = workDir || getWorkingDirectory(void 0, true);
-  const { getLedgerBlocks } = await import("./ledger-43SIVE7X.js");
+  const { getLedgerBlocks } = await import("./ledger-PLE3C3X4.js");
   const blocks = await getLedgerBlocks(projectDir);
   const block = blocks.find((b) => b.blockHash === issue.ledgerBlockHash);
   if (!block) return null;
@@ -780,4 +779,4 @@ export {
   getDailyLogs,
   getIssueLedgerEntry
 };
-//# sourceMappingURL=chunk-QH77RQB3.js.map
+//# sourceMappingURL=chunk-4ZAFQEP6.js.map

package/dist/chunk-4ZAFQEP6.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/memory/issue-store.ts","../src/memory/bm25.ts","../src/memory/compactor.ts"],"sourcesContent":["/**\n * Issue Memory Store\n * \n * Working state cache complementary to the immutable ledger.\n * \n * Architecture:\n * - Ledger (.trie/memory/ledger.json) = immutable source of truth\n * - Issue Memory = mutable working state + BM25 search index\n * \n * Issue memory provides:\n * - Fast BM25 semantic search for pattern matching\n * - Mutable state tracking (resolved, open, fixed)\n * - Goal violation metrics and progress tracking\n * - Links back to ledger via ledgerBlockHash\n * \n * Phase 1 Hardening:\n * - SHA256 hashing for proper deduplication\n * - Atomic writes to prevent corruption\n * - Rotational backups for recovery\n * - Zod validation for data integrity\n */\n\nimport { mkdir, readFile, readdir } from 'fs/promises';\nimport { createHash } from 'crypto';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from '../utils/workspace.js';\nimport type { Issue } from '../types/index.js';\nimport { BM25Index } from './bm25.js';\nimport { compactOldIssues, saveCompactedSummary, getHistoricalInsights } from './compactor.js';\nimport { atomicWriteJSON } from '../utils/atomic-write.js';\nimport { BackupManager } from '../utils/backup-manager.js';\nimport { IssueIndexSchema, safeParseAndValidate } from './validation.js';\nimport { appendIssuesToLedger } from './ledger.js';\n\nexport interface StoredIssue {\n  id: string;\n  hash: string;\n  severity: string;\n  issue: string;\n  fix: string;\n  file: string;\n  line: number | undefined;\n  agent: string;\n  category: string | undefined;\n  timestamp: string;\n  project: string;\n  resolved: boolean | undefined;\n  resolvedAt: string | undefined;\n  ledgerBlockHash?: string; // Link to immutable ledger record\n}\n\nexport interface IssueSearchResult {\n  issue: StoredIssue;\n  score: number;\n  matchType: 'bm25' | 'keyword' | 'fts5';\n}\n\nexport interface IssueMemoryStats {\n  totalIssues: number;\n  activeIssues: number;  // Unresolved issues\n  issuesByAgent: Record<string, number>;\n  issuesBySeverity: Record<string, number>;  // All issues (historical)\n  activeIssuesBySeverity: Record<string, number>;  // Only unresolved\n  oldestIssue: string | undefined;\n  newestIssue: string | undefined;\n  resolvedCount: number;\n  historicalIssues: number;\n  improvementTrend: 'improving' | 'stable' | 'declining' | 'unknown';\n  capacityInfo: {\n    current: number;\n    max: number;\n    percentFull: number;\n    isAtCap: boolean;\n  };\n  deduplicationStats: {\n    duplicatesAvoided: number;\n    uniquePatterns: number;\n  };\n}\n\n/**\n * Store issues and link them to the ledger\n * \n * Flow:\n * 1. Append to ledger (immutable source of truth)\n * 2. Cache in issue memory with ledger reference\n * \n * Returns number of unique issues added (after deduplication)\n */\nexport async function storeIssues(\n  issues: Issue[],\n  project: string,\n  workDir?: string\n): Promise<{ stored: number; duplicates: number }> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const memoryDir = join(getTrieDirectory(projectDir), 'memory');\n  await mkdir(memoryDir, { recursive: true });\n  \n  const stored: StoredIssue[] = [];\n  const now = new Date().toISOString();\n  const seenHashes = new Set<string>();\n  let duplicates = 0;\n  \n  for (const issue of issues) {\n    const hash = hashIssue(issue);\n    \n    // Skip duplicates within the same scan\n    if (seenHashes.has(hash)) {\n      duplicates++;\n      continue;\n    }\n    seenHashes.add(hash);\n    \n    const storedIssue: StoredIssue = {\n      id: issue.id,\n      hash,\n      severity: issue.severity,\n      issue: issue.issue,\n      fix: issue.fix,\n      file: issue.file,\n      line: issue.line,\n      agent: issue.agent,\n      category: issue.category,\n      timestamp: now,\n      project,\n      resolved: false,\n      resolvedAt: undefined,\n      ...(issue.ledgerBlockHash && { ledgerBlockHash: issue.ledgerBlockHash }),\n    };\n    stored.push(storedIssue);\n  }\n\n  // 1. Write to ledger (immutable source of truth)\n  const ledgerBlock = await appendIssuesToLedger(stored, projectDir);\n  \n  // 2. Link issues to their ledger block\n  if (ledgerBlock) {\n    for (const issue of stored) {\n      issue.ledgerBlockHash = ledgerBlock.blockHash;\n    }\n  }\n  \n  // 3. Cache in issue memory (working state + search index)\n  const dedupedCount = await updateIssueIndex(stored, projectDir);\n  \n  return { stored: dedupedCount, duplicates: duplicates + (stored.length - dedupedCount) };\n}\n\n/**\n * Search issues using BM25 ranking (same algorithm as Elasticsearch)\n */\nexport async function searchIssues(\n  query: string,\n  options: {\n    workDir?: string;\n    limit?: number;\n    project?: string;\n    severity?: string[];\n    agent?: string;\n    includeResolved?: boolean;\n  } = {}\n): Promise<IssueSearchResult[]> {\n  const projectDir = options.workDir || getWorkingDirectory(undefined, true);\n  const limit = options.limit || 10;\n  const allIssues = await loadIssueIndex(projectDir);\n  \n  if (allIssues.length === 0) {\n    return [];\n  }\n\n  // Filter issues first\n  const filteredIssues = allIssues.filter(issue => {\n    if (options.project && issue.project !== options.project) return false;\n    if (options.severity && !options.severity.includes(issue.severity)) return false;\n    if (options.agent && issue.agent !== options.agent) return false;\n    if (!options.includeResolved && issue.resolved) return false;\n    return true;\n  });\n\n  if (filteredIssues.length === 0) {\n    return [];\n  }\n\n  // Build BM25 index\n  const bm25 = new BM25Index();\n  const issueMap = new Map<string, StoredIssue>();\n  \n  for (const issue of filteredIssues) {\n    const searchText = `${issue.issue} ${issue.fix} ${issue.file} ${issue.agent} ${issue.category || ''} ${issue.severity}`;\n    bm25.addDocument({\n      id: issue.id,\n      text: searchText,\n    });\n    issueMap.set(issue.id, issue);\n  }\n\n  // Search with BM25\n  const bm25Results = bm25.search(query, limit);\n  \n  return bm25Results.map(result => ({\n    issue: issueMap.get(result.id)!,\n    score: result.score,\n    matchType: 'bm25' as const,\n  }));\n}\n\n/**\n * Find similar issues using BM25 similarity\n */\nexport async function findSimilarIssues(\n  issue: Issue,\n  options: {\n    workDir?: string;\n    limit?: number;\n    excludeSameFile?: boolean;\n  } = {}\n): Promise<IssueSearchResult[]> {\n  // Use the issue description and fix as the query for similarity\n  const query = `${issue.issue} ${issue.fix} ${issue.agent}`;\n  const searchOptions: Parameters<typeof searchIssues>[1] = {\n    limit: (options.limit || 5) + 5, // Get extra to account for filtering\n    includeResolved: true,\n  };\n  if (options.workDir !== undefined) {\n    searchOptions.workDir = options.workDir;\n  }\n  const results = await searchIssues(query, searchOptions);\n\n  let filtered = results.filter(r => r.issue.id !== issue.id);\n  \n  if (options.excludeSameFile) {\n    filtered = filtered.filter(r => r.issue.file !== issue.file);\n  }\n  \n  return filtered.slice(0, options.limit || 5);\n}\n\n/**\n * Mark an issue as resolved\n */\nexport async function markIssueResolved(\n  issueId: string,\n  workDir?: string\n): Promise<boolean> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  \n  const issue = index.find(i => i.id === issueId);\n  if (!issue) return false;\n  \n  issue.resolved = true;\n  issue.resolvedAt = new Date().toISOString();\n  \n  await saveIssueIndex(index, projectDir);\n  return true;\n}\n\n/**\n * Auto-resolve issues that were not found in the latest scan\n * \n * After a scan completes, this function compares new issues against stored issues.\n * Issues that were previously found in scanned files but are no longer detected\n * are automatically marked as resolved.\n * \n * @param newIssueHashes - Set of hashes from the current scan\n * @param scannedFiles - List of files that were scanned (to scope resolution)\n * @param workDir - Working directory\n * @returns Number of issues auto-resolved\n */\nexport async function autoResolveIssues(\n  newIssueHashes: Set<string>,\n  scannedFiles: string[],\n  workDir?: string\n): Promise<{ resolved: number; stillActive: number }> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  \n  // Normalize scanned file paths for comparison\n  const scannedFileSet = new Set(scannedFiles.map(f => f.replace(/\\\\/g, '/')));\n  \n  const now = new Date().toISOString();\n  let resolvedCount = 0;\n  let stillActiveCount = 0;\n  \n  for (const issue of index) {\n    // Skip already resolved issues\n    if (issue.resolved) continue;\n    \n    // Normalize the issue file path\n    const normalizedFile = issue.file.replace(/\\\\/g, '/');\n    \n    // Only auto-resolve issues in files that were scanned\n    // This prevents marking issues as resolved if we just did a partial scan\n    if (!scannedFileSet.has(normalizedFile)) {\n      stillActiveCount++;\n      continue;\n    }\n    \n    // If the issue's hash is NOT in the new scan results, it's been fixed\n    if (!newIssueHashes.has(issue.hash)) {\n      issue.resolved = true;\n      issue.resolvedAt = now;\n      resolvedCount++;\n    } else {\n      stillActiveCount++;\n    }\n  }\n  \n  // Only save if we resolved something\n  if (resolvedCount > 0) {\n    await saveIssueIndex(index, projectDir);\n  }\n  \n  return { resolved: resolvedCount, stillActive: stillActiveCount };\n}\n\n/**\n * Resolve goal violation issues for a specific file and goal\n * Called when a goal violation is fixed\n */\nexport async function resolveGoalViolation(\n  file: string,\n  goalDescription: string,\n  workDir?: string\n): Promise<number> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  \n  const now = new Date().toISOString();\n  let resolvedCount = 0;\n  \n  for (const issue of index) {\n    if (issue.resolved) continue;\n    if (issue.agent !== 'goal-violation') continue;\n    \n    // Match file and goal description\n    const normalizedFile = issue.file.replace(/\\\\/g, '/');\n    const normalizedTarget = file.replace(/\\\\/g, '/');\n    \n    if (normalizedFile === normalizedTarget && \n        issue.issue.includes(`Goal \"${goalDescription}\"`)) {\n      issue.resolved = true;\n      issue.resolvedAt = now;\n      resolvedCount++;\n    }\n  }\n  \n  if (resolvedCount > 0) {\n    await saveIssueIndex(index, projectDir);\n  }\n  \n  return resolvedCount;\n}\n\n/**\n * Get hash for an issue (for external callers)\n */\nexport function getIssueHash(issue: Issue): string {\n  return hashIssue(issue);\n}\n\n/**\n * Get memory statistics including historical insights\n */\nexport async function getMemoryStats(workDir?: string): Promise<IssueMemoryStats> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  const historical = await getHistoricalInsights(projectDir);\n  \n  const MAX_ISSUES = 10000;\n  const uniqueHashes = new Set(index.map(i => i.hash));\n  \n  const stats: IssueMemoryStats = {\n    totalIssues: index.length,\n    activeIssues: 0,\n    issuesByAgent: {},\n    issuesBySeverity: {},\n    activeIssuesBySeverity: {},\n    oldestIssue: undefined,\n    newestIssue: undefined,\n    resolvedCount: 0,\n    historicalIssues: historical.totalHistoricalIssues,\n    improvementTrend: historical.improvementTrend,\n    capacityInfo: {\n      current: index.length,\n      max: MAX_ISSUES,\n      percentFull: Math.round((index.length / MAX_ISSUES) * 100),\n      isAtCap: index.length >= MAX_ISSUES,\n    },\n    deduplicationStats: {\n      duplicatesAvoided: index.length - uniqueHashes.size,\n      uniquePatterns: uniqueHashes.size,\n    },\n  };\n\n  for (const issue of index) {\n    stats.issuesByAgent[issue.agent] = (stats.issuesByAgent[issue.agent] || 0) + 1;\n    stats.issuesBySeverity[issue.severity] = (stats.issuesBySeverity[issue.severity] || 0) + 1;\n    \n    if (issue.resolved) {\n      stats.resolvedCount++;\n    } else {\n      stats.activeIssues++;\n      stats.activeIssuesBySeverity[issue.severity] = (stats.activeIssuesBySeverity[issue.severity] || 0) + 1;\n    }\n  }\n\n  if (index.length > 0) {\n    const sorted = [...index].sort((a, b) => \n      new Date(a.timestamp).getTime() - new Date(b.timestamp).getTime()\n    );\n    const oldest = sorted[0]?.timestamp;\n    const newest = sorted[sorted.length - 1]?.timestamp;\n    if (oldest !== undefined) {\n      stats.oldestIssue = oldest;\n    }\n    if (newest !== undefined) {\n      stats.newestIssue = newest;\n    }\n  }\n\n  return stats;\n}\n\n/**\n * Get recent issues\n * @param options.includeResolved - If false (default), only returns unresolved issues\n */\nexport async function getRecentIssues(\n  options: {\n    workDir?: string;\n    limit?: number;\n    daysBack?: number;\n    includeResolved?: boolean;\n  } = {}\n): Promise<StoredIssue[]> {\n  const projectDir = options.workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  const limit = options.limit || 20;\n  const daysBack = options.daysBack || 7;\n  const includeResolved = options.includeResolved ?? false;\n  \n  const cutoff = new Date();\n  cutoff.setDate(cutoff.getDate() - daysBack);\n  \n  return index\n    .filter(i => {\n      if (new Date(i.timestamp) < cutoff) return false;\n      if (!includeResolved && i.resolved) return false;\n      return true;\n    })\n    .sort((a, b) => new Date(b.timestamp).getTime() - new Date(a.timestamp).getTime())\n    .slice(0, limit);\n}\n\n/**\n * Purge issues from memory\n * Offers different strategies for managing memory capacity\n */\nexport async function purgeIssues(\n  strategy: 'smart' | 'resolved' | 'old' | 'all',\n  options: {\n    workDir?: string;\n    daysOld?: number;\n  } = {}\n): Promise<{ removed: number; remaining: number; strategy: string }> {\n  const projectDir = options.workDir || getWorkingDirectory(undefined, true);\n  const index = await loadIssueIndex(projectDir);\n  const originalCount = index.length;\n  \n  let remaining: StoredIssue[] = [];\n  \n  switch (strategy) {\n    case 'smart':\n      // Keep: critical/high severity, recent (< 30 days), unresolved\n      const thirtyDaysAgo = new Date();\n      thirtyDaysAgo.setDate(thirtyDaysAgo.getDate() - 30);\n      \n      remaining = index.filter(i => {\n        const isRecent = new Date(i.timestamp) >= thirtyDaysAgo;\n        const isImportant = ['critical', 'high'].includes(i.severity);\n        const isUnresolved = !i.resolved;\n        \n        return isRecent || isImportant || isUnresolved;\n      });\n      break;\n      \n    case 'resolved':\n      // Remove all resolved issues\n      remaining = index.filter(i => !i.resolved);\n      break;\n      \n    case 'old':\n      // Remove issues older than specified days (default 90)\n      const daysOld = options.daysOld || 90;\n      const cutoffDate = new Date();\n      cutoffDate.setDate(cutoffDate.getDate() - daysOld);\n      \n      remaining = index.filter(i => new Date(i.timestamp) >= cutoffDate);\n      break;\n      \n    case 'all':\n      // Clear all issues (keeps compacted summaries)\n      remaining = [];\n      break;\n  }\n  \n  await saveIssueIndex(remaining, projectDir);\n  \n  return {\n    removed: originalCount - remaining.length,\n    remaining: remaining.length,\n    strategy,\n  };\n}\n\n/**\n * Get daily log files (legacy - deprecated)\n * \n * Note: Daily logs are redundant with the ledger.\n * The ledger provides the same information with better guarantees.\n * This function is kept for backward compatibility.\n */\nexport async function getDailyLogs(workDir?: string): Promise<string[]> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const memoryDir = join(getTrieDirectory(projectDir), 'memory');\n  \n  try {\n    if (!existsSync(memoryDir)) return [];\n    const files = await readdir(memoryDir);\n    return files\n      .filter(f => /^\\d{4}-\\d{2}-\\d{2}\\.md$/.test(f))\n      .sort()\n      .reverse();\n  } catch {\n    return [];\n  }\n}\n\n// Private helpers\n\n/**\n * Get ledger entry for an issue\n * \n * Issue memory stores working state (resolved, etc.)\n * Ledger stores immutable history (what was detected, when)\n * \n * This helper links them together for full context.\n */\nexport async function getIssueLedgerEntry(\n  issue: StoredIssue,\n  workDir?: string\n): Promise<{ block: any; entry: any } | null> {\n  if (!issue.ledgerBlockHash) return null;\n  \n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const { getLedgerBlocks } = await import('./ledger.js');\n  const blocks = await getLedgerBlocks(projectDir);\n  \n  // Find the block this issue is linked to\n  const block = blocks.find(b => b.blockHash === issue.ledgerBlockHash);\n  if (!block) return null;\n  \n  // Find the specific entry in that block\n  const entry = block.entries.find((e: any) => e.hash === issue.hash);\n  if (!entry) return null;\n  \n  return { block, entry };\n}\n\n// Private helpers\n\n/**\n * Load issue index with validation and auto-recovery\n * \n * If the file is corrupted:\n * 1. Attempts to recover from the most recent valid backup\n * 2. Returns empty array if no valid backup exists\n */\nasync function loadIssueIndex(projectDir: string): Promise<StoredIssue[]> {\n  const indexPath = join(getTrieDirectory(projectDir), 'memory', 'issues.json');\n  \n  try {\n    if (existsSync(indexPath)) {\n      const content = await readFile(indexPath, 'utf-8');\n      const result = safeParseAndValidate(content, IssueIndexSchema);\n      \n      if (result.success) {\n        return result.data as StoredIssue[];\n      }\n      \n      // Validation failed - attempt recovery from backup\n      console.error(`   Issue index corrupted: ${result.error}`);\n      const backupManager = new BackupManager(indexPath);\n      \n      if (await backupManager.recoverFromBackup()) {\n        console.error('   ✅ Recovered from backup');\n        const recovered = await readFile(indexPath, 'utf-8');\n        const recoveredResult = safeParseAndValidate(recovered, IssueIndexSchema);\n        if (recoveredResult.success) {\n          return recoveredResult.data as StoredIssue[];\n        }\n      }\n      \n      console.error('   No valid backup found, starting fresh');\n    }\n  } catch {\n    // Index doesn't exist or recovery failed\n  }\n  \n  return [];\n}\n\nasync function updateIssueIndex(newIssues: StoredIssue[], projectDir: string): Promise<number> {\n  const memoryDir = join(getTrieDirectory(projectDir), 'memory');\n  await mkdir(memoryDir, { recursive: true });\n  \n  let existing = await loadIssueIndex(projectDir);\n  \n  // Intelligent deduplication: only add truly unique issues\n  // Issues are unique if they have different hash (content + file + severity + agent)\n  const hashSet = new Set(existing.map(i => i.hash));\n  const toAdd = newIssues.filter(i => !hashSet.has(i.hash));\n  const dedupedCount = toAdd.length;\n  \n  existing = [...existing, ...toAdd];\n  \n  // Intelligent compaction: summarize old issues instead of deleting\n  if (existing.length > 500) {\n    const { summary, remaining } = await compactOldIssues(existing, {\n      keepDays: 30,\n      minIssuesToCompact: 100,\n    });\n    \n    if (summary) {\n      await saveCompactedSummary(summary, projectDir);\n      existing = remaining;\n    }\n  }\n  \n  // Hard cap: prune to 10,000 if still too large\n  // Prioritize: 1) Recent issues, 2) High severity, 3) Unresolved\n  if (existing.length > 10000) {\n    existing = intelligentPrune(existing, 10000);\n  }\n  \n  await saveIssueIndex(existing, projectDir);\n  return dedupedCount;\n}\n\n/**\n * Intelligently prune issues to target count\n * Prioritizes: recent, high severity, unresolved\n */\nfunction intelligentPrune(issues: StoredIssue[], targetCount: number): StoredIssue[] {\n  const severityWeight: Record<string, number> = {\n    critical: 100,\n    high: 50,\n    moderate: 20,\n    low: 10,\n    info: 5,\n  };\n  \n  const scored = issues.map(issue => {\n    const ageInDays = (Date.now() - new Date(issue.timestamp).getTime()) / (1000 * 60 * 60 * 24);\n    const recencyScore = Math.max(0, 100 - ageInDays * 2); // Newer = higher score\n    const severityScore = severityWeight[issue.severity] || 10;\n    const resolvedPenalty = issue.resolved ? -50 : 0;\n    \n    return {\n      issue,\n      score: recencyScore + severityScore + resolvedPenalty,\n    };\n  });\n  \n  return scored\n    .sort((a, b) => b.score - a.score)\n    .slice(0, targetCount)\n    .map(s => s.issue);\n}\n\n/**\n * Save issue index with backup and atomic write\n * \n * 1. Creates a backup of the existing file\n * 2. Writes the new data atomically (temp file + rename)\n * 3. Maintains up to 5 rotational backups\n */\nasync function saveIssueIndex(issues: StoredIssue[], projectDir: string): Promise<void> {\n  const memoryDir = join(getTrieDirectory(projectDir), 'memory');\n  await mkdir(memoryDir, { recursive: true });\n  \n  const indexPath = join(memoryDir, 'issues.json');\n  \n  // Create backup before writing\n  const backupManager = new BackupManager(indexPath);\n  await backupManager.createBackup();\n  \n  // Atomic write\n  await atomicWriteJSON(indexPath, issues);\n}\n\n/**\n * Hash an issue using SHA256 for proper deduplication\n * \n * Uses cryptographic hashing to eliminate collision risk.\n * The hash is truncated to 16 characters for storage efficiency\n * while still providing effectively zero collision probability.\n */\nfunction hashIssue(issue: Issue): string {\n  const content = `${issue.issue}|${issue.file}|${issue.severity}|${issue.agent}`;\n  return createHash('sha256').update(content).digest('hex').slice(0, 16);\n}\n\n","/**\n * BM25 Search Implementation\n * \n * BM25 (Best Match 25) is a ranking function used by search engines.\n * It's more sophisticated than TF-IDF and handles term frequency saturation.\n * \n * This is the same algorithm used by Elasticsearch.\n */\n\nexport interface BM25Document {\n  id: string;\n  text: string;\n  metadata?: Record<string, unknown>;\n}\n\nexport interface BM25Result {\n  id: string;\n  score: number;\n  metadata?: Record<string, unknown>;\n}\n\nexport class BM25Index {\n  private documents: Map<string, BM25Document> = new Map();\n  private termFrequencies: Map<string, Map<string, number>> = new Map();\n  private documentFrequencies: Map<string, number> = new Map();\n  private documentLengths: Map<string, number> = new Map();\n  private avgDocLength: number = 0;\n  private k1: number = 1.5;\n  private b: number = 0.75;\n\n  /**\n   * Add a document to the index\n   */\n  addDocument(doc: BM25Document): void {\n    const tokens = this.tokenize(doc.text);\n    this.documents.set(doc.id, doc);\n    this.documentLengths.set(doc.id, tokens.length);\n\n    const termFreq = new Map<string, number>();\n    const seenTerms = new Set<string>();\n\n    for (const token of tokens) {\n      termFreq.set(token, (termFreq.get(token) || 0) + 1);\n      \n      if (!seenTerms.has(token)) {\n        seenTerms.add(token);\n        this.documentFrequencies.set(token, (this.documentFrequencies.get(token) || 0) + 1);\n      }\n    }\n\n    this.termFrequencies.set(doc.id, termFreq);\n    this.updateAvgDocLength();\n  }\n\n  /**\n   * Add multiple documents\n   */\n  addDocuments(docs: BM25Document[]): void {\n    for (const doc of docs) {\n      this.addDocument(doc);\n    }\n  }\n\n  /**\n   * Search the index\n   */\n  search(query: string, limit: number = 10): BM25Result[] {\n    const queryTokens = this.tokenize(query);\n    const scores: Map<string, number> = new Map();\n    const N = this.documents.size;\n\n    for (const [docId] of this.documents) {\n      let score = 0;\n      const docLength = this.documentLengths.get(docId) || 0;\n      const termFreqs = this.termFrequencies.get(docId);\n\n      if (!termFreqs) continue;\n\n      for (const term of queryTokens) {\n        const tf = termFreqs.get(term) || 0;\n        if (tf === 0) continue;\n\n        const df = this.documentFrequencies.get(term) || 0;\n        const idf = Math.log((N - df + 0.5) / (df + 0.5) + 1);\n\n        const numerator = tf * (this.k1 + 1);\n        const denominator = tf + this.k1 * (1 - this.b + this.b * (docLength / this.avgDocLength));\n        \n        score += idf * (numerator / denominator);\n      }\n\n      if (score > 0) {\n        scores.set(docId, score);\n      }\n    }\n\n    return Array.from(scores.entries())\n      .sort((a, b) => b[1] - a[1])\n      .slice(0, limit)\n      .map(([id, score]) => {\n        const metadata = this.documents.get(id)?.metadata;\n        const result: BM25Result = { id, score };\n        if (metadata !== undefined) {\n          result.metadata = metadata;\n        }\n        return result;\n      });\n  }\n\n  /**\n   * Get document count\n   */\n  get size(): number {\n    return this.documents.size;\n  }\n\n  /**\n   * Clear the index\n   */\n  clear(): void {\n    this.documents.clear();\n    this.termFrequencies.clear();\n    this.documentFrequencies.clear();\n    this.documentLengths.clear();\n    this.avgDocLength = 0;\n  }\n\n  /**\n   * Serialize the index to JSON\n   */\n  serialize(): string {\n    return JSON.stringify({\n      documents: Array.from(this.documents.entries()),\n      termFrequencies: Array.from(this.termFrequencies.entries()).map(([k, v]) => [k, Array.from(v.entries())]),\n      documentFrequencies: Array.from(this.documentFrequencies.entries()),\n      documentLengths: Array.from(this.documentLengths.entries()),\n      avgDocLength: this.avgDocLength,\n    });\n  }\n\n  /**\n   * Load from serialized JSON\n   */\n  static deserialize(json: string): BM25Index {\n    const data = JSON.parse(json);\n    const index = new BM25Index();\n    \n    index.documents = new Map(data.documents);\n    index.termFrequencies = new Map(data.termFrequencies.map(([k, v]: [string, [string, number][]]) => [k, new Map(v)]));\n    index.documentFrequencies = new Map(data.documentFrequencies);\n    index.documentLengths = new Map(data.documentLengths);\n    index.avgDocLength = data.avgDocLength;\n    \n    return index;\n  }\n\n  private tokenize(text: string): string[] {\n    return text\n      .toLowerCase()\n      .replace(/[^\\w\\s]/g, ' ')\n      .split(/\\s+/)\n      .filter(token => token.length > 2 && !this.isStopWord(token));\n  }\n\n  private isStopWord(word: string): boolean {\n    const stopWords = new Set([\n      'the', 'be', 'to', 'of', 'and', 'a', 'in', 'that', 'have', 'i',\n      'it', 'for', 'not', 'on', 'with', 'he', 'as', 'you', 'do', 'at',\n      'this', 'but', 'his', 'by', 'from', 'they', 'we', 'say', 'her', 'she',\n      'or', 'an', 'will', 'my', 'one', 'all', 'would', 'there', 'their', 'what',\n      'so', 'up', 'out', 'if', 'about', 'who', 'get', 'which', 'go', 'me',\n      'when', 'make', 'can', 'like', 'time', 'no', 'just', 'him', 'know', 'take',\n      'into', 'year', 'your', 'some', 'could', 'them', 'see', 'other', 'than', 'then',\n      'now', 'look', 'only', 'come', 'its', 'over', 'also', 'back', 'after', 'use',\n      'two', 'how', 'our', 'first', 'way', 'even', 'new', 'want', 'because', 'any',\n      'these', 'give', 'day', 'most', 'us', 'should', 'been', 'has', 'was', 'are',\n    ]);\n    return stopWords.has(word);\n  }\n\n  private updateAvgDocLength(): void {\n    if (this.documentLengths.size === 0) {\n      this.avgDocLength = 0;\n      return;\n    }\n    const total = Array.from(this.documentLengths.values()).reduce((a, b) => a + b, 0);\n    this.avgDocLength = total / this.documentLengths.size;\n  }\n}\n","/**\n * Memory Compactor\n * \n * Intelligently compacts old issues into summaries instead of 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string;\n}\n\nexport interface PatternSummary {\n  pattern: string;\n  count: number;\n  severity: string;\n  agent: string;\n  exampleFix: string;\n}\n\n/**\n * Compact old issues into summaries\n * Returns the compacted summary and the remaining (recent) issues\n */\nexport async function compactOldIssues(\n  issues: StoredIssue[],\n  options: {\n    keepDays?: number;\n    minIssuesToCompact?: number;\n  } = {}\n): Promise<{ summary: CompactedSummary | null; remaining: StoredIssue[] }> {\n  const keepDays = options.keepDays ?? 30;\n  const minIssues = options.minIssuesToCompact ?? 100;\n  \n  const cutoffDate = new Date();\n  cutoffDate.setDate(cutoffDate.getDate() - keepDays);\n  \n  const oldIssues = issues.filter(i => new Date(i.timestamp) < cutoffDate);\n  const recentIssues = issues.filter(i => new Date(i.timestamp) >= cutoffDate);\n  \n  // Only compact if we have enough old issues\n  if (oldIssues.length < minIssues) {\n    return { summary: null, remaining: issues };\n  }\n  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(existsSync(summaryPath)) {\n      const content = await readFile(summaryPath, 'utf-8');\n      const result = safeParseAndValidate(content, CompactedSummariesIndexSchema);\n      \n      if (result.success) {\n        return result.data as CompactedSummary[];\n      }\n      \n      // Validation failed - attempt recovery\n      const backupManager = new BackupManager(summaryPath);\n      if (await backupManager.recoverFromBackup()) {\n        const recovered = await readFile(summaryPath, 'utf-8');\n        const recoveredResult = safeParseAndValidate(recovered, CompactedSummariesIndexSchema);\n        if (recoveredResult.success) {\n          return recoveredResult.data as CompactedSummary[];\n        }\n      }\n    }\n  } catch {\n    // File doesn't exist or recovery failed\n  }\n  \n  return [];\n}\n\n/**\n * Generate a markdown summary of compacted history\n */\nexport function formatCompactedSummary(summary: CompactedSummary): string {\n  const lines: string[] = [\n    `## 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recurringPatterns: [],\n      improvementTrend: 'unknown',\n    };\n  }\n  \n  const totalHistoricalIssues = summaries.reduce((sum, s) => sum + s.totalIssues, 0);\n  \n  // Find patterns that appear across multiple summaries\n  const patternCounts: Map<string, PatternSummary & { appearances: number }> = new Map();\n  \n  for (const summary of summaries) {\n    for (const pattern of summary.topPatterns) {\n      const key = pattern.pattern;\n      const existing = patternCounts.get(key);\n      if (existing) {\n        existing.count += pattern.count;\n        existing.appearances++;\n      } else {\n        patternCounts.set(key, { ...pattern, appearances: 1 });\n      }\n    }\n  }\n  \n  const recurringPatterns = Array.from(patternCounts.values())\n    .filter(p => p.appearances >= 2)\n    .sort((a, b) => b.count - a.count)\n    .slice(0, 5);\n  \n  // Calculate improvement trend\n  let improvementTrend: 'improving' | 'stable' | 'declining' | 'unknown' = 'unknown';\n  \n  if 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package/dist/{chunk-SH7H3WRU.js → chunk-7F2R2ITA.js}

@@ -1,6 +1,6 @@
 import {
   isInteractiveMode
-} from "./chunk-APMV77PU.js";
+} from "./chunk-JKEEQAG2.js";
 
 // src/utils/workspace.ts
 import { execSync } from "child_process";
@@ -176,8 +176,8 @@ function getWorkingDirectory(explicitDir, silent = false) {
     console.error("   Or set DEBUG_TRIE_WORKSPACE=1 to debug workspace detection");
     console.error(`   Current working directory: ${cwd}`);
     console.error("   Examples:");
-    console.error('     Use trie_security with directory: "/path/to/your/project"');
-    console.error('     Use trie_scan with directory: "./your-project"');
+    console.error('     Use trie_fix with directory: "/path/to/your/project"');
+    console.error('     Use trie watch with directory: "./your-project"');
   }
   return cwd;
 }
@@ -186,4 +186,4 @@ export {
   getTrieDirectory,
   getWorkingDirectory
 };
-//# sourceMappingURL=chunk-SH7H3WRU.js.map
+//# sourceMappingURL=chunk-7F2R2ITA.js.map