@timmeck/brain-core 2.5.0 → 2.7.0

package/dist/research/journal.js.map

@@ -0,0 +1 @@
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package/dist/research/knowledge-distiller.d.ts

@@ -0,0 +1,95 @@
+import type Database from 'better-sqlite3';
+export interface Principle {
+    id: string;
+    domain: string;
+    statement: string;
+    success_rate: number;
+    sample_size: number;
+    confidence: number;
+    source: string;
+}
+export interface AntiPattern {
+    id: string;
+    domain: string;
+    statement: string;
+    failure_rate: number;
+    sample_size: number;
+    confidence: number;
+    alternative: string;
+}
+export interface Strategy {
+    id: string;
+    domain: string;
+    description: string;
+    conditions: string[];
+    effectiveness: number;
+    evidence_count: number;
+}
+export interface KnowledgePackage {
+    id: string;
+    created: number;
+    domain: string;
+    principles: Principle[];
+    anti_patterns: AntiPattern[];
+    strategies: Strategy[];
+    confidence: number;
+    evidence_summary: string;
+    applicable_when: string[];
+    transferable_to: string[];
+}
+export interface KnowledgeEvolution {
+    domain: string;
+    period: string;
+    principles_added: number;
+    principles_removed: number;
+    anti_patterns_discovered: number;
+    strategies_changed: number;
+    confidence_trend: 'rising' | 'stable' | 'falling';
+    highlights: string[];
+}
+export interface KnowledgeDistillerConfig {
+    brainName: string;
+    /** Minimum evidence to extract a principle. Default: 5 */
+    minEvidence?: number;
+    /** Minimum success rate for a principle. Default: 0.7 */
+    minSuccessRate?: number;
+    /** Minimum failure rate for an anti-pattern. Default: 0.6 */
+    minFailureRate?: number;
+}
+export declare function runKnowledgeDistillerMigration(db: Database.Database): void;
+export declare class KnowledgeDistiller {
+    private db;
+    private config;
+    private log;
+    constructor(db: Database.Database, config: KnowledgeDistillerConfig);
+    /** Distill knowledge from confirmed hypotheses, research discoveries, and strategy adaptations. */
+    distill(): {
+        principles: Principle[];
+        antiPatterns: AntiPattern[];
+        strategies: Strategy[];
+    };
+    /** Get summary of all distilled knowledge. */
+    getSummary(): {
+        principles: number;
+        antiPatterns: number;
+        strategies: number;
+        topPrinciples: Principle[];
+        avgConfidence: number;
+    };
+    /** Get principles, optionally filtered by domain. */
+    getPrinciples(domain?: string, limit?: number): Principle[];
+    /** Get anti-patterns. */
+    getAntiPatterns(domain?: string, limit?: number): AntiPattern[];
+    /** Build a transferable knowledge package for a domain. */
+    getPackage(domain: string): KnowledgePackage;
+    /** Track how knowledge has evolved over time. */
+    getEvolution(domain?: string, periods?: number): KnowledgeEvolution[];
+    private extractPrinciples;
+    private extractAntiPatterns;
+    private extractStrategies;
+    private suggestTransferDomains;
+    private upsertPrinciple;
+    private upsertAntiPattern;
+    private upsertStrategy;
+    private hashString;
+}

package/dist/research/knowledge-distiller.js

@@ -0,0 +1,426 @@
+import { getLogger } from '../utils/logger.js';
+// ── Migration ───────────────────────────────────────────
+export function runKnowledgeDistillerMigration(db) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS knowledge_principles (
+      id TEXT PRIMARY KEY,
+      domain TEXT NOT NULL,
+      statement TEXT NOT NULL,
+      success_rate REAL NOT NULL,
+      sample_size INTEGER NOT NULL,
+      confidence REAL NOT NULL,
+      source TEXT NOT NULL,
+      created_at TEXT DEFAULT (datetime('now')),
+      updated_at TEXT DEFAULT (datetime('now'))
+    );
+    CREATE INDEX IF NOT EXISTS idx_kp_domain ON knowledge_principles(domain);
+
+    CREATE TABLE IF NOT EXISTS knowledge_anti_patterns (
+      id TEXT PRIMARY KEY,
+      domain TEXT NOT NULL,
+      statement TEXT NOT NULL,
+      failure_rate REAL NOT NULL,
+      sample_size INTEGER NOT NULL,
+      confidence REAL NOT NULL,
+      alternative TEXT NOT NULL,
+      created_at TEXT DEFAULT (datetime('now')),
+      updated_at TEXT DEFAULT (datetime('now'))
+    );
+    CREATE INDEX IF NOT EXISTS idx_kap_domain ON knowledge_anti_patterns(domain);
+
+    CREATE TABLE IF NOT EXISTS knowledge_strategies (
+      id TEXT PRIMARY KEY,
+      domain TEXT NOT NULL,
+      description TEXT NOT NULL,
+      conditions TEXT NOT NULL,
+      effectiveness REAL NOT NULL,
+      evidence_count INTEGER NOT NULL,
+      created_at TEXT DEFAULT (datetime('now')),
+      updated_at TEXT DEFAULT (datetime('now'))
+    );
+    CREATE INDEX IF NOT EXISTS idx_ks_domain ON knowledge_strategies(domain);
+
+    CREATE TABLE IF NOT EXISTS knowledge_snapshots (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      timestamp INTEGER NOT NULL,
+      domain TEXT NOT NULL,
+      principles_count INTEGER NOT NULL,
+      anti_patterns_count INTEGER NOT NULL,
+      strategies_count INTEGER NOT NULL,
+      avg_confidence REAL NOT NULL,
+      created_at TEXT DEFAULT (datetime('now'))
+    );
+  `);
+}
+// ── Engine ──────────────────────────────────────────────
+export class KnowledgeDistiller {
+    db;
+    config;
+    log = getLogger();
+    constructor(db, config) {
+        this.db = db;
+        this.config = {
+            brainName: config.brainName,
+            minEvidence: config.minEvidence ?? 5,
+            minSuccessRate: config.minSuccessRate ?? 0.7,
+            minFailureRate: config.minFailureRate ?? 0.6,
+        };
+        runKnowledgeDistillerMigration(db);
+    }
+    /** Distill knowledge from confirmed hypotheses, research discoveries, and strategy adaptations. */
+    distill() {
+        const principles = this.extractPrinciples();
+        const antiPatterns = this.extractAntiPatterns();
+        const strategies = this.extractStrategies();
+        // Take snapshot for evolution tracking
+        this.db.prepare(`
+      INSERT INTO knowledge_snapshots (timestamp, domain, principles_count, anti_patterns_count, strategies_count, avg_confidence)
+      VALUES (?, ?, ?, ?, ?, ?)
+    `).run(Date.now(), this.config.brainName, principles.length, antiPatterns.length, strategies.length, principles.length > 0 ? principles.reduce((s, p) => s + p.confidence, 0) / principles.length : 0);
+        return { principles, antiPatterns, strategies };
+    }
+    /** Get summary of all distilled knowledge. */
+    getSummary() {
+        const pCount = this.db.prepare(`SELECT COUNT(*) as c FROM knowledge_principles`).get().c;
+        const apCount = this.db.prepare(`SELECT COUNT(*) as c FROM knowledge_anti_patterns`).get().c;
+        const sCount = this.db.prepare(`SELECT COUNT(*) as c FROM knowledge_strategies`).get().c;
+        const topPrinciples = this.getPrinciples(undefined, 5);
+        const avgConf = topPrinciples.length > 0 ? topPrinciples.reduce((s, p) => s + p.confidence, 0) / topPrinciples.length : 0;
+        return {
+            principles: pCount,
+            antiPatterns: apCount,
+            strategies: sCount,
+            topPrinciples,
+            avgConfidence: avgConf,
+        };
+    }
+    /** Get principles, optionally filtered by domain. */
+    getPrinciples(domain, limit = 20) {
+        let sql = `SELECT * FROM knowledge_principles`;
+        const params = [];
+        if (domain) {
+            sql += ` WHERE domain = ?`;
+            params.push(domain);
+        }
+        sql += ` ORDER BY confidence DESC, success_rate DESC LIMIT ?`;
+        params.push(limit);
+        return this.db.prepare(sql).all(...params).map(r => ({
+            id: r.id,
+            domain: r.domain,
+            statement: r.statement,
+            success_rate: r.success_rate,
+            sample_size: r.sample_size,
+            confidence: r.confidence,
+            source: r.source,
+        }));
+    }
+    /** Get anti-patterns. */
+    getAntiPatterns(domain, limit = 20) {
+        let sql = `SELECT * FROM knowledge_anti_patterns`;
+        const params = [];
+        if (domain) {
+            sql += ` WHERE domain = ?`;
+            params.push(domain);
+        }
+        sql += ` ORDER BY failure_rate DESC LIMIT ?`;
+        params.push(limit);
+        return this.db.prepare(sql).all(...params).map(r => ({
+            id: r.id,
+            domain: r.domain,
+            statement: r.statement,
+            failure_rate: r.failure_rate,
+            sample_size: r.sample_size,
+            confidence: r.confidence,
+            alternative: r.alternative,
+        }));
+    }
+    /** Build a transferable knowledge package for a domain. */
+    getPackage(domain) {
+        const principles = this.getPrinciples(domain, 15);
+        const antiPatterns = this.getAntiPatterns(domain, 10);
+        const strategies = this.db.prepare(`
+      SELECT * FROM knowledge_strategies WHERE domain = ? ORDER BY effectiveness DESC LIMIT 10
+    `).all(domain).map(r => ({
+            id: r.id,
+            domain: r.domain,
+            description: r.description,
+            conditions: JSON.parse(r.conditions),
+            effectiveness: r.effectiveness,
+            evidence_count: r.evidence_count,
+        }));
+        const allConf = [...principles.map(p => p.confidence), ...antiPatterns.map(a => a.confidence)];
+        const avgConf = allConf.length > 0 ? allConf.reduce((a, b) => a + b, 0) / allConf.length : 0;
+        return {
+            id: `${domain}-${Date.now()}`,
+            created: Date.now(),
+            domain,
+            principles,
+            anti_patterns: antiPatterns,
+            strategies,
+            confidence: avgConf,
+            evidence_summary: `${principles.length} principles, ${antiPatterns.length} anti-patterns, ${strategies.length} strategies from ${this.config.brainName}`,
+            applicable_when: [`Working with ${domain} tasks`, `Debugging ${domain} issues`],
+            transferable_to: this.suggestTransferDomains(domain),
+        };
+    }
+    /** Track how knowledge has evolved over time. */
+    getEvolution(domain, periods = 5) {
+        const snapshots = this.db.prepare(`
+      SELECT * FROM knowledge_snapshots
+      ${domain ? 'WHERE domain = ?' : ''}
+      ORDER BY timestamp DESC LIMIT ?
+    `).all(...(domain ? [domain, periods * 2] : [periods * 2]));
+        if (snapshots.length < 2)
+            return [];
+        const evolutions = [];
+        for (let i = 0; i < snapshots.length - 1; i++) {
+            const current = snapshots[i];
+            const previous = snapshots[i + 1];
+            const principlesDelta = current.principles_count - previous.principles_count;
+            const antiPatternsDelta = current.anti_patterns_count - previous.anti_patterns_count;
+            const strategyDelta = current.strategies_count - previous.strategies_count;
+            const confCurrent = current.avg_confidence;
+            const confPrev = previous.avg_confidence;
+            const confTrend = confCurrent > confPrev + 0.02 ? 'rising' :
+                confCurrent < confPrev - 0.02 ? 'falling' : 'stable';
+            const highlights = [];
+            if (principlesDelta > 0)
+                highlights.push(`+${principlesDelta} new principles`);
+            if (principlesDelta < 0)
+                highlights.push(`${principlesDelta} principles removed (outdated)`);
+            if (antiPatternsDelta > 0)
+                highlights.push(`+${antiPatternsDelta} anti-patterns discovered`);
+            if (strategyDelta !== 0)
+                highlights.push(`${strategyDelta > 0 ? '+' : ''}${strategyDelta} strategy changes`);
+            evolutions.push({
+                domain: current.domain,
+                period: new Date(current.timestamp).toLocaleDateString(),
+                principles_added: Math.max(0, principlesDelta),
+                principles_removed: Math.abs(Math.min(0, principlesDelta)),
+                anti_patterns_discovered: Math.max(0, antiPatternsDelta),
+                strategies_changed: Math.abs(strategyDelta),
+                confidence_trend: confTrend,
+                highlights,
+            });
+        }
+        return evolutions;
+    }
+    extractPrinciples() {
+        const principles = [];
+        // Extract from confirmed hypotheses
+        try {
+            const confirmed = this.db.prepare(`
+        SELECT statement, type, variables, confidence, evidence_for, evidence_against
+        FROM hypotheses
+        WHERE status = 'confirmed' AND evidence_for >= ?
+        ORDER BY confidence DESC
+      `).all(this.config.minEvidence);
+            for (const h of confirmed) {
+                const total = h.evidence_for + h.evidence_against;
+                const successRate = h.evidence_for / Math.max(total, 1);
+                if (successRate < this.config.minSuccessRate)
+                    continue;
+                const id = `hyp-${this.hashString(h.statement)}`;
+                const principle = {
+                    id,
+                    domain: h.type || this.config.brainName,
+                    statement: h.statement,
+                    success_rate: successRate,
+                    sample_size: total,
+                    confidence: h.confidence,
+                    source: 'confirmed_hypothesis',
+                };
+                this.upsertPrinciple(principle);
+                principles.push(principle);
+            }
+        }
+        catch { /* hypotheses table might not exist */ }
+        // Extract from research discoveries
+        try {
+            const discoveries = this.db.prepare(`
+        SELECT title, description, confidence, type, data
+        FROM research_discoveries
+        WHERE confidence >= 0.6 AND type IN ('confirmed_hypothesis', 'causal_chain')
+        ORDER BY confidence DESC LIMIT 20
+      `).all();
+            for (const d of discoveries) {
+                const id = `disc-${this.hashString(d.title)}`;
+                const principle = {
+                    id,
+                    domain: this.config.brainName,
+                    statement: d.title,
+                    success_rate: d.confidence,
+                    sample_size: 1,
+                    confidence: d.confidence,
+                    source: `research_discovery:${d.type}`,
+                };
+                this.upsertPrinciple(principle);
+                principles.push(principle);
+            }
+        }
+        catch { /* research_discoveries table might not exist */ }
+        return principles;
+    }
+    extractAntiPatterns() {
+        const antiPatterns = [];
+        // Extract from rejected hypotheses (things that don't work)
+        try {
+            const rejected = this.db.prepare(`
+        SELECT statement, type, evidence_for, evidence_against, confidence
+        FROM hypotheses
+        WHERE status = 'rejected' AND evidence_against >= ?
+        ORDER BY evidence_against DESC
+      `).all(this.config.minEvidence);
+            for (const h of rejected) {
+                const total = h.evidence_for + h.evidence_against;
+                const failureRate = h.evidence_against / Math.max(total, 1);
+                if (failureRate < this.config.minFailureRate)
+                    continue;
+                const id = `anti-${this.hashString(h.statement)}`;
+                const anti = {
+                    id,
+                    domain: h.type || this.config.brainName,
+                    statement: `NOT: ${h.statement}`,
+                    failure_rate: failureRate,
+                    sample_size: total,
+                    confidence: h.confidence,
+                    alternative: 'See confirmed principles for what works instead.',
+                };
+                this.upsertAntiPattern(anti);
+                antiPatterns.push(anti);
+            }
+        }
+        catch { /* hypotheses table might not exist */ }
+        // Extract from reverted strategy adaptations
+        try {
+            const reverted = this.db.prepare(`
+        SELECT strategy, parameter, old_value, new_value, reason, revert_reason
+        FROM strategy_adaptations
+        WHERE reverted = 1
+        ORDER BY timestamp DESC LIMIT 20
+      `).all();
+            for (const r of reverted) {
+                const id = `revert-${r.strategy}-${r.parameter}`;
+                const anti = {
+                    id,
+                    domain: r.strategy,
+                    statement: `Changing ${r.parameter} from ${r.old_value} to ${r.new_value} degrades performance`,
+                    failure_rate: 1.0,
+                    sample_size: 1,
+                    confidence: 0.7,
+                    alternative: `Keep ${r.parameter} at ${r.old_value}. Reason: ${r.revert_reason ?? r.reason}`,
+                };
+                this.upsertAntiPattern(anti);
+                antiPatterns.push(anti);
+            }
+        }
+        catch { /* strategy_adaptations table might not exist */ }
+        return antiPatterns;
+    }
+    extractStrategies() {
+        const strategies = [];
+        // Extract from successful strategy adaptations
+        try {
+            const successful = this.db.prepare(`
+        SELECT strategy, parameter, old_value, new_value, reason, evidence,
+               performance_before, performance_after
+        FROM strategy_adaptations
+        WHERE reverted = 0 AND performance_after IS NOT NULL
+        AND performance_after > performance_before
+        ORDER BY (performance_after - performance_before) DESC LIMIT 20
+      `).all();
+            for (const s of successful) {
+                const improvement = s.performance_after - s.performance_before;
+                const id = `strat-${s.strategy}-${s.parameter}-${Date.now()}`;
+                const strategy = {
+                    id,
+                    domain: s.strategy,
+                    description: `Set ${s.parameter} to ${s.new_value} (from ${s.old_value}) for ${(improvement * 100).toFixed(1)}% improvement`,
+                    conditions: [s.reason],
+                    effectiveness: improvement,
+                    evidence_count: 1,
+                };
+                this.upsertStrategy(strategy);
+                strategies.push(strategy);
+            }
+        }
+        catch { /* strategy_adaptations table might not exist */ }
+        // Extract from meta-learning optimizations
+        try {
+            const optimizations = this.db.prepare(`
+        SELECT param_name, old_value, new_value, reason, improvement
+        FROM meta_learning_optimizations
+        WHERE improvement > 0
+        ORDER BY improvement DESC LIMIT 10
+      `).all();
+            for (const o of optimizations) {
+                const id = `meta-${o.param_name}`;
+                const strategy = {
+                    id,
+                    domain: 'meta_learning',
+                    description: `Optimize ${o.param_name} to ${o.new_value} for ${(o.improvement * 100).toFixed(1)}% gain`,
+                    conditions: [o.reason],
+                    effectiveness: o.improvement,
+                    evidence_count: 1,
+                };
+                this.upsertStrategy(strategy);
+                strategies.push(strategy);
+            }
+        }
+        catch { /* meta_learning_optimizations table might not exist */ }
+        return strategies;
+    }
+    suggestTransferDomains(domain) {
+        const allDomains = new Set();
+        try {
+            const rows = this.db.prepare(`SELECT DISTINCT domain FROM knowledge_principles`).all();
+            for (const r of rows)
+                allDomains.add(r.domain);
+        }
+        catch { /* ignore */ }
+        allDomains.delete(domain);
+        return [...allDomains].slice(0, 5);
+    }
+    upsertPrinciple(p) {
+        this.db.prepare(`
+      INSERT INTO knowledge_principles (id, domain, statement, success_rate, sample_size, confidence, source)
+      VALUES (?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        success_rate = excluded.success_rate,
+        sample_size = excluded.sample_size,
+        confidence = excluded.confidence,
+        updated_at = datetime('now')
+    `).run(p.id, p.domain, p.statement, p.success_rate, p.sample_size, p.confidence, p.source);
+    }
+    upsertAntiPattern(a) {
+        this.db.prepare(`
+      INSERT INTO knowledge_anti_patterns (id, domain, statement, failure_rate, sample_size, confidence, alternative)
+      VALUES (?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        failure_rate = excluded.failure_rate,
+        sample_size = excluded.sample_size,
+        confidence = excluded.confidence,
+        updated_at = datetime('now')
+    `).run(a.id, a.domain, a.statement, a.failure_rate, a.sample_size, a.confidence, a.alternative);
+    }
+    upsertStrategy(s) {
+        this.db.prepare(`
+      INSERT INTO knowledge_strategies (id, domain, description, conditions, effectiveness, evidence_count)
+      VALUES (?, ?, ?, ?, ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        effectiveness = excluded.effectiveness,
+        evidence_count = knowledge_strategies.evidence_count + 1,
+        updated_at = datetime('now')
+    `).run(s.id, s.domain, s.description, JSON.stringify(s.conditions), s.effectiveness, s.evidence_count);
+    }
+    hashString(s) {
+        let hash = 0;
+        for (let i = 0; i < s.length; i++) {
+            const char = s.charCodeAt(i);
+            hash = ((hash << 5) - hash) + char;
+            hash = hash & hash;
+        }
+        return Math.abs(hash).toString(36);
+    }
+}
+//# sourceMappingURL=knowledge-distiller.js.map

package/dist/research/knowledge-distiller.js.map

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package/dist/research/research-orchestrator.d.ts

@@ -0,0 +1,68 @@
+import type Database from 'better-sqlite3';
+import { SelfObserver } from './self-observer.js';
+import { AdaptiveStrategyEngine } from './adaptive-strategy.js';
+import { ExperimentEngine } from './experiment-engine.js';
+import { CrossDomainEngine } from './cross-domain-engine.js';
+import { CounterfactualEngine } from './counterfactual-engine.js';
+import { KnowledgeDistiller } from './knowledge-distiller.js';
+import { ResearchAgendaEngine } from './agenda-engine.js';
+import { AnomalyDetective } from './anomaly-detective.js';
+import { ResearchJournal } from './journal.js';
+import type { CausalGraph } from '../causal/engine.js';
+import type { ResearchCycleReport } from './autonomous-scheduler.js';
+export interface ResearchOrchestratorConfig {
+    brainName: string;
+    /** Feedback loop interval in ms. Default: 300_000 (5 min) */
+    feedbackIntervalMs?: number;
+    /** Knowledge distillation every N cycles. Default: 5 */
+    distillEvery?: number;
+    /** Research agenda regeneration every N cycles. Default: 3 */
+    agendaEvery?: number;
+    /** Journal reflection every N cycles. Default: 10 */
+    reflectEvery?: number;
+}
+export declare class ResearchOrchestrator {
+    readonly selfObserver: SelfObserver;
+    readonly adaptiveStrategy: AdaptiveStrategyEngine;
+    readonly experimentEngine: ExperimentEngine;
+    readonly crossDomain: CrossDomainEngine;
+    readonly counterfactual: CounterfactualEngine;
+    readonly knowledgeDistiller: KnowledgeDistiller;
+    readonly researchAgenda: ResearchAgendaEngine;
+    readonly anomalyDetective: AnomalyDetective;
+    readonly journal: ResearchJournal;
+    private brainName;
+    private feedbackTimer;
+    private cycleCount;
+    private distillEvery;
+    private agendaEvery;
+    private reflectEvery;
+    private log;
+    constructor(db: Database.Database, config: ResearchOrchestratorConfig, causalGraph?: CausalGraph);
+    /** Start the autonomous feedback loop timer. */
+    start(intervalMs?: number): void;
+    /** Stop the feedback loop. */
+    stop(): void;
+    /**
+     * Feed a domain event from the brain's EventBus.
+     * Routes to: SelfObserver, AnomalyDetective, CrossDomain.
+     */
+    onEvent(eventType: string, data?: Record<string, unknown>): void;
+    /**
+     * Feed a cross-brain event from CrossBrainSubscription.
+     * Routes to: CrossDomainEngine, AnomalyDetective.
+     */
+    onCrossBrainEvent(sourceBrain: string, eventType: string, data?: Record<string, unknown>): void;
+    /**
+     * Hook into AutonomousResearchScheduler cycle completion.
+     * Records discoveries in journal and feeds metrics to anomaly detection.
+     */
+    onResearchCycleComplete(report: ResearchCycleReport): void;
+    /**
+     * Run one autonomous feedback cycle.
+     * This is where the engines talk to each other.
+     */
+    runFeedbackCycle(): void;
+    /** Get a comprehensive research summary for dashboards/API. */
+    getSummary(): Record<string, unknown>;
+}