@tiangong-ai/cli 0.0.34 → 0.0.36

package/dist/research/workspace/publication-workflow.js.map

@@ -0,0 +1 @@
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package/dist/research/workspace/publication.d.ts

@@ -0,0 +1,110 @@
+import type { ResearchPolicyBinding, ResearchVerdictCeiling } from "./types.js";
+export type PublicationClaimRole = "central" | "supporting" | "contextual" | "future-research";
+export type PublicationResultClass = "definition" | "accounting-identity" | "illustrative-sensitivity" | "calibrated-model" | "causal-estimate" | "field-observation" | "validated-forecast" | "systematic-synthesis" | "conceptual-proposition";
+export type PublicationOutcomeSupport = "unobserved" | "future-work" | "conceptual-proposition" | "calibrated-model" | "causal-estimate" | "field-observation" | "validated-forecast" | "systematic-synthesis";
+export type PublicationEvidenceKind = "peer-reviewed-empirical" | "peer-reviewed-model" | "peer-reviewed-review" | "official-data" | "administrative-record" | "patent" | "news" | "owner-provided-input" | "internal-model" | "other";
+export interface PublicationAssessment {
+    schemaVersion: 1;
+    title: string;
+    claims: Array<{
+        id: string;
+        role: PublicationClaimRole;
+        statement: string;
+        evidenceSourceIds: string[];
+        dimensionIds: string[];
+        resultIds: string[];
+    }>;
+    outcomes: Array<{
+        id: string;
+        role: "central" | "supporting" | "contextual";
+        label: string;
+        supportStatus: PublicationOutcomeSupport;
+        claimIds: string[];
+        resultIds: string[];
+    }>;
+    titleOutcomeIds: string[];
+    results: Array<{
+        id: string;
+        role: "central" | "supporting" | "contextual";
+        resultClass: PublicationResultClass;
+        statement: string;
+        evidenceSourceIds: string[];
+        independentlyReproduced: boolean;
+    }>;
+    sourceClassifications: Array<{
+        sourceId: string;
+        relationship: "direct" | "adjacent" | "contextual";
+        evidenceKind: PublicationEvidenceKind;
+    }>;
+    recallAudit: {
+        status: "pass" | "fail" | "incomplete";
+        candidateDispositionComplete: boolean;
+        databaseCoverageComplete: boolean;
+        backwardCitationChasing: boolean;
+        forwardCitationChasing: boolean;
+        adversarialSearch: boolean;
+        closestPriorWorkCompared: boolean;
+        missingCoreWorkIds: string[];
+    };
+}
+export interface PublicationAssessmentIssue {
+    code: string;
+    severity: "blocking" | "major" | "minor";
+    message: string;
+}
+export interface PublicationEvidenceComposition {
+    totalSources: number;
+    totalFullText: number;
+    directPeerReviewedFullText: number;
+    directEmpiricalFullText: number;
+    directModelFullText: number;
+    adjacentPeerReviewedFullText: number;
+    administrativeRecords: number;
+    patents: number;
+    news: number;
+    ownerProvidedInputs: number;
+    internalModels: number;
+    metadataOnly: number;
+}
+export interface TopJournalAssessmentResult {
+    schemaVersion: 1;
+    policySha256: string;
+    evidenceSnapshotSha256: string;
+    requestedArticleType: string;
+    supportedArticleType: string;
+    evidenceComposition: PublicationEvidenceComposition;
+    issues: PublicationAssessmentIssue[];
+    issueCodes: string[];
+    evidenceReportAllowed: boolean;
+    canClaimSubmissionReady: boolean;
+    verdictCeiling: ResearchVerdictCeiling;
+    pivotOptions: string[];
+}
+interface AssessmentEvidenceSnapshot {
+    snapshotId: string;
+    snapshotSha256: string;
+    sources: Array<{
+        id?: unknown;
+        fullTextAvailable?: unknown;
+        provenance?: unknown;
+    }>;
+    coverage: {
+        dimensions?: Array<{
+            id?: unknown;
+            status?: unknown;
+            sourceIds?: unknown;
+        }>;
+    };
+}
+interface AssessmentInput {
+    id: string;
+    trustStatus?: "verified-owner-input" | "unverified-owner-input" | "reference-only" | "replication-candidate";
+    independentlyReproduced?: boolean;
+}
+export declare function evaluateTopJournalAssessment(input: {
+    policy: ResearchPolicyBinding;
+    evidenceSnapshot: AssessmentEvidenceSnapshot;
+    inputs: AssessmentInput[];
+    assessment: PublicationAssessment;
+}): TopJournalAssessmentResult;
+export {};

package/dist/research/workspace/publication.js

@@ -0,0 +1,246 @@
+export function evaluateTopJournalAssessment(input) {
+    const issues = new Map();
+    const addIssue = (code, message, severity = "blocking") => {
+        if (!issues.has(code))
+            issues.set(code, { code, severity, message });
+    };
+    const assessment = input.assessment;
+    const sourceById = new Map(input.evidenceSnapshot.sources.flatMap((source) => typeof source.id === "string" ? [[source.id, source]] : []));
+    const classificationById = new Map(assessment.sourceClassifications.map((classification) => [
+        classification.sourceId,
+        classification,
+    ]));
+    const evidenceComposition = computeEvidenceComposition(input.evidenceSnapshot.sources, classificationById);
+    const claimById = new Map(assessment.claims.map((claim) => [claim.id, claim]));
+    const resultById = new Map(assessment.results.map((result) => [result.id, result]));
+    const outcomeById = new Map(assessment.outcomes.map((outcome) => [outcome.id, outcome]));
+    const dimensionStatus = new Map((input.evidenceSnapshot.coverage.dimensions ?? []).flatMap((dimension) => typeof dimension.id === "string" &&
+        ["covered", "partial", "missing"].includes(String(dimension.status))
+        ? [[dimension.id, String(dimension.status)]]
+        : []));
+    const centralClaims = assessment.claims.filter((claim) => claim.role === "central");
+    const centralOutcomes = assessment.outcomes.filter((outcome) => outcome.role === "central");
+    const centralResults = assessment.results.filter((result) => result.role === "central");
+    if (!centralClaims.length) {
+        addIssue("CENTRAL_CLAIM_MISSING", "The publication assessment defines no central claim.");
+    }
+    if (!centralOutcomes.length) {
+        addIssue("CENTRAL_OUTCOME_UNOBSERVED", "The publication assessment defines no central outcome.");
+    }
+    for (const claim of centralClaims) {
+        if (!claim.evidenceSourceIds.length) {
+            addIssue("CENTRAL_CLAIM_UNSUPPORTED", "A central claim has no bound evidence source.");
+        }
+        for (const sourceId of claim.evidenceSourceIds) {
+            if (!sourceById.has(sourceId)) {
+                addIssue("CENTRAL_CLAIM_UNSUPPORTED", "A central claim cites a source outside the snapshot.");
+            }
+        }
+        for (const dimensionId of claim.dimensionIds) {
+            if (dimensionStatus.get(dimensionId) !== "covered") {
+                addIssue("CENTRAL_DIMENSION_INCOMPLETE", "A central claim depends on a partial, missing, or undeclared evidence dimension.");
+            }
+        }
+        if (claim.resultIds.some((resultId) => !resultById.has(resultId))) {
+            addIssue("CENTRAL_CLAIM_UNSUPPORTED", "A central claim cites an unknown result.");
+        }
+    }
+    const empiricalOutcomeStatuses = new Set([
+        "field-observation",
+        "causal-estimate",
+        "calibrated-model",
+        "validated-forecast",
+        "systematic-synthesis",
+    ]);
+    for (const outcome of centralOutcomes) {
+        const supported = empiricalOutcomeStatuses.has(outcome.supportStatus) ||
+            (input.policy.articleType === "perspective-theory" &&
+                outcome.supportStatus === "conceptual-proposition");
+        if (!supported) {
+            addIssue("CENTRAL_OUTCOME_UNOBSERVED", "A central outcome was not observed, estimated, calibrated, validated, or systematically synthesized.");
+        }
+    }
+    for (const outcomeId of assessment.titleOutcomeIds) {
+        const outcome = outcomeById.get(outcomeId);
+        if (!outcome || !empiricalOutcomeStatuses.has(outcome.supportStatus)) {
+            addIssue("TITLE_OUTCOME_MISMATCH", "The title promises an outcome that the frozen results do not support.");
+        }
+    }
+    const illustrativeClasses = new Set([
+        "definition",
+        "accounting-identity",
+        "illustrative-sensitivity",
+        "conceptual-proposition",
+    ]);
+    const illustrativeOnly = centralResults.length === 0 ||
+        centralResults.every((result) => illustrativeClasses.has(result.resultClass));
+    let supportedArticleType = input.policy.articleType;
+    if (illustrativeOnly &&
+        ["original-empirical", "computational-modeling", "methods-data-resource"].includes(input.policy.articleType)) {
+        supportedArticleType = "perspective-theory";
+        addIssue("ORIGINAL_QUANTITATIVE_CONTRIBUTION_INSUFFICIENT", "Central results are definitions, identities, illustrative sensitivities, or conceptual propositions rather than an original quantitative contribution.");
+    }
+    if (input.policy.articleType === "original-empirical" &&
+        centralResults.some((result) => !["field-observation", "causal-estimate", "validated-forecast"].includes(result.resultClass))) {
+        addIssue("ORIGINAL_QUANTITATIVE_CONTRIBUTION_INSUFFICIENT", "The original empirical article type requires observed, estimated, or independently validated central results.");
+    }
+    if (input.policy.articleType === "computational-modeling" &&
+        centralResults.some((result) => !["calibrated-model", "validated-forecast"].includes(result.resultClass))) {
+        addIssue("MODEL_NOT_CALIBRATED_OR_VALIDATED", "The modeling article type requires calibrated or independently validated central results.");
+    }
+    for (const result of centralResults) {
+        if (!result.independentlyReproduced) {
+            addIssue("MATERIAL_RESULT_NOT_REPRODUCED", "A central result has not been independently reproduced from frozen inputs.");
+        }
+    }
+    const inputById = new Map(input.inputs.map((ownerInput) => [ownerInput.id, ownerInput]));
+    for (const claim of centralClaims) {
+        for (const sourceId of claim.evidenceSourceIds) {
+            const source = sourceById.get(sourceId);
+            const provenance = source?.provenance &&
+                typeof source.provenance === "object" &&
+                !Array.isArray(source.provenance)
+                ? source.provenance
+                : null;
+            const ownerInputId = provenance?.kind === "input" && typeof provenance.id === "string"
+                ? provenance.id
+                : sourceId;
+            const ownerInput = inputById.get(ownerInputId);
+            if (ownerInput &&
+                (ownerInput.trustStatus !== "verified-owner-input" ||
+                    ownerInput.independentlyReproduced !== true)) {
+                addIssue("OWNER_INPUT_UNVERIFIED", "Reference-only or unverified owner input cannot uniquely support a central result.");
+            }
+        }
+    }
+    const constraints = input.policy.resolvedConstraints ?? {};
+    const minDirectPeerReviewed = numericConstraint(constraints.minDirectPeerReviewedFullText);
+    if (minDirectPeerReviewed > 0 &&
+        evidenceComposition.directPeerReviewedFullText < minDirectPeerReviewed) {
+        addIssue("DIRECT_PEER_REVIEWED_FULL_TEXT_INSUFFICIENT", `The policy requires ${minDirectPeerReviewed} direct peer-reviewed full texts; the snapshot contains ${evidenceComposition.directPeerReviewedFullText}.`);
+    }
+    const minDirectEmpirical = numericConstraint(constraints.minDirectEmpiricalFullText);
+    if (minDirectEmpirical > 0 && evidenceComposition.directEmpiricalFullText < minDirectEmpirical) {
+        addIssue("DIRECT_EMPIRICAL_FULL_TEXT_INSUFFICIENT", `The policy requires ${minDirectEmpirical} direct empirical full texts; the snapshot contains ${evidenceComposition.directEmpiricalFullText}.`);
+    }
+    const minDirectModel = numericConstraint(constraints.minDirectModelFullText);
+    if (minDirectModel > 0 && evidenceComposition.directModelFullText < minDirectModel) {
+        addIssue("DIRECT_MODEL_FULL_TEXT_INSUFFICIENT", `The policy requires ${minDirectModel} direct model full texts; the snapshot contains ${evidenceComposition.directModelFullText}.`);
+    }
+    const recall = assessment.recallAudit;
+    if (recall.status !== "pass" ||
+        !recall.databaseCoverageComplete ||
+        !recall.backwardCitationChasing ||
+        !recall.forwardCitationChasing ||
+        !recall.adversarialSearch ||
+        recall.missingCoreWorkIds.length > 0) {
+        addIssue("LITERATURE_RECALL_FAILURE", "The novelty and recall audit is incomplete or identified missing direct core work.");
+    }
+    if (!recall.closestPriorWorkCompared || recall.missingCoreWorkIds.length > 0) {
+        addIssue("NOVELTY_NOT_ESTABLISHED", "The contribution is not compared against all identified closest prior work.");
+    }
+    if (!recall.candidateDispositionComplete) {
+        addIssue("CANDIDATE_DISPOSITION_INCOMPLETE", "Not every discovered candidate has an explicit screening disposition.");
+    }
+    const orderedIssues = [...issues.values()].sort((left, right) => left.code.localeCompare(right.code));
+    const blocking = orderedIssues.some((issue) => issue.severity === "blocking");
+    const canClaimSubmissionReady = !blocking &&
+        input.policy.targetJournal !== null &&
+        input.policy.verdictCeiling === "target-journal-submission-ready";
+    return {
+        schemaVersion: 1,
+        policySha256: input.policy.resolvedPolicySha256,
+        evidenceSnapshotSha256: input.evidenceSnapshot.snapshotSha256,
+        requestedArticleType: input.policy.articleType,
+        supportedArticleType,
+        evidenceComposition,
+        issues: orderedIssues,
+        issueCodes: orderedIssues.map((issue) => issue.code),
+        evidenceReportAllowed: true,
+        canClaimSubmissionReady,
+        verdictCeiling: canClaimSubmissionReady
+            ? input.policy.verdictCeiling
+            : minimumVerdictCeiling(input.policy.verdictCeiling),
+        pivotOptions: publicationPivots(input.policy.articleType, supportedArticleType, blocking),
+    };
+}
+function computeEvidenceComposition(sources, classifications) {
+    const result = {
+        totalSources: sources.length,
+        totalFullText: 0,
+        directPeerReviewedFullText: 0,
+        directEmpiricalFullText: 0,
+        directModelFullText: 0,
+        adjacentPeerReviewedFullText: 0,
+        administrativeRecords: 0,
+        patents: 0,
+        news: 0,
+        ownerProvidedInputs: 0,
+        internalModels: 0,
+        metadataOnly: 0,
+    };
+    for (const source of sources) {
+        if (typeof source.id !== "string")
+            continue;
+        const fullText = source.fullTextAvailable === true;
+        if (fullText)
+            result.totalFullText += 1;
+        else
+            result.metadataOnly += 1;
+        const classification = classifications.get(source.id);
+        if (!classification)
+            continue;
+        const peerReviewed = classification.evidenceKind.startsWith("peer-reviewed-");
+        if (fullText && classification.relationship === "direct" && peerReviewed) {
+            result.directPeerReviewedFullText += 1;
+        }
+        if (fullText &&
+            classification.relationship === "direct" &&
+            ["peer-reviewed-empirical", "official-data"].includes(classification.evidenceKind)) {
+            result.directEmpiricalFullText += 1;
+        }
+        if (fullText &&
+            classification.relationship === "direct" &&
+            classification.evidenceKind === "peer-reviewed-model") {
+            result.directModelFullText += 1;
+        }
+        if (fullText && classification.relationship === "adjacent" && peerReviewed) {
+            result.adjacentPeerReviewedFullText += 1;
+        }
+        if (classification.evidenceKind === "administrative-record") {
+            result.administrativeRecords += 1;
+        }
+        else if (classification.evidenceKind === "patent") {
+            result.patents += 1;
+        }
+        else if (classification.evidenceKind === "news") {
+            result.news += 1;
+        }
+        else if (classification.evidenceKind === "owner-provided-input") {
+            result.ownerProvidedInputs += 1;
+        }
+        else if (classification.evidenceKind === "internal-model") {
+            result.internalModels += 1;
+        }
+    }
+    return result;
+}
+function numericConstraint(value) {
+    return typeof value === "number" && Number.isInteger(value) && value >= 0 ? value : 0;
+}
+function minimumVerdictCeiling(ceiling) {
+    return ceiling === "top-journal-feasibility-complete" ? ceiling : "top-journal-candidate";
+}
+function publicationPivots(requestedArticleType, supportedArticleType, blocking) {
+    const pivots = new Set();
+    if (requestedArticleType !== supportedArticleType)
+        pivots.add(supportedArticleType);
+    if (blocking) {
+        pivots.add("additional-research-or-data");
+        pivots.add("systematic-review-addendum");
+    }
+    if (requestedArticleType !== "perspective-theory")
+        pivots.add("perspective-theory");
+    return [...pivots];
+}
+//# sourceMappingURL=publication.js.map

package/dist/research/workspace/publication.js.map

@@ -0,0 +1 @@
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package/dist/research/workspace/research-policy-wizard.d.ts

@@ -0,0 +1,40 @@
+import type { CliIO } from "../../io.js";
+import { type ResearchSetupWizardNoteTone } from "./setup-wizard.js";
+import { type ResearchPolicyStatus } from "./research-policy.js";
+export interface ResearchPolicyWizardPrompt {
+    note(message: string, tone?: ResearchSetupWizardNoteTone): void;
+    input(message: string, defaultValue?: string): Promise<string>;
+    confirm(message: string, defaultValue: boolean): Promise<boolean>;
+    select<T extends string>(message: string, choices: ReadonlyArray<{
+        value: T;
+        label: string;
+    }>, defaultValue: T): Promise<T>;
+    close(): void;
+}
+export interface ResearchPolicyWizardResult {
+    schemaVersion: 1;
+    projectId: string;
+    sourceRoot: string;
+    defaultsInUse: boolean;
+    approved: boolean;
+    status: ResearchPolicyStatus;
+    next: {
+        action: "customize-and-approve" | "initialize-top-journal-project";
+        minimumAction: string;
+        retryCommand: string;
+    };
+}
+export declare function resolveInstalledResearchPolicySource(rootInput: string, environment?: NodeJS.ProcessEnv): Promise<string>;
+export declare function executeResearchPolicyWizard(input: {
+    root: string;
+    projectId: string;
+    prompt: ResearchPolicyWizardPrompt;
+    sourceRoot?: string;
+    environment?: NodeJS.ProcessEnv;
+}): Promise<ResearchPolicyWizardResult>;
+export declare function runInteractiveResearchPolicyWizard(input: {
+    root: string;
+    projectId: string;
+    io: CliIO;
+    json: boolean;
+}): Promise<number>;