@tiangong-ai/cli 0.0.34 → 0.0.36

package/dist/research/workspace/audit-bundle.js.map

@@ -0,0 +1 @@
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package/dist/research/workspace/input-plan.js

@@ -82,6 +82,10 @@ export async function reverifyProjectInputPlan(plan) {
             sourceType: entry.sourceType,
             fullText: entry.fullText,
             publicationDate: entry.publicationDate,
+            ...(entry.trustStatus ? { trustStatus: entry.trustStatus } : {}),
+            ...(entry.independentlyReproduced !== undefined
+                ? { independentlyReproduced: entry.independentlyReproduced }
+                : {}),
         }))
             .sort(compareInputPlanEntries),
     };
@@ -141,6 +145,8 @@ export function projectInputsFromPlan(plan, addedAt) {
         dimensions: [...entry.dimensions],
         fullText: entry.fullText,
         publicationDate: entry.publicationDate,
+        trustStatus: entry.trustStatus ?? defaultInputTrustStatus(entry.role),
+        independentlyReproduced: entry.independentlyReproduced ?? false,
         addedAt,
     }));
 }
@@ -175,7 +181,10 @@ function isProjectInputPlanEntry(value) {
         candidate.dimensions.every((item) => typeof item === "string") &&
         typeof candidate.sourceType === "string" &&
         typeof candidate.fullText === "boolean" &&
-        (candidate.publicationDate === null || typeof candidate.publicationDate === "string"));
+        (candidate.publicationDate === null || typeof candidate.publicationDate === "string") &&
+        (candidate.trustStatus === undefined || validTrustStatus(candidate.trustStatus)) &&
+        (candidate.independentlyReproduced === undefined ||
+            typeof candidate.independentlyReproduced === "boolean"));
 }
 function normalizeInputPlanEntry(entry) {
     const dimensions = [...new Set(entry.dimensions.map(normalizeRequirementId))].sort();
@@ -212,8 +221,25 @@ function normalizeInputPlanEntry(entry) {
         contextRanges,
         dimensions,
         sourceType,
+        trustStatus: entry.trustStatus ?? defaultInputTrustStatus(entry.role),
+        independentlyReproduced: entry.independentlyReproduced ?? false,
     };
 }
+function defaultInputTrustStatus(role) {
+    if (role === "reference")
+        return "reference-only";
+    if (role === "replication")
+        return "replication-candidate";
+    return "unverified-owner-input";
+}
+function validTrustStatus(value) {
+    return [
+        "verified-owner-input",
+        "unverified-owner-input",
+        "reference-only",
+        "replication-candidate",
+    ].includes(String(value));
+}
 async function verifyInputPlanEntry(entry) {
     const source = await verifyRegularInputFile(entry.path);
     const context = entry.contextPath

package/dist/research/workspace/input-plan.js.map

@@ -1 +1 @@
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package/dist/research/workspace/preflight.d.ts

@@ -1,4 +1,5 @@
-import type { AgentPackageStage, AgentRoute, ProjectEvidenceRequirements, VerifiedProjectInputPlan, WorkspaceConfig } from "./types.js";
+import { type VerifiedScientificDesign } from "./scientific-design.js";
+import type { AgentPackageStage, AgentRoute, ProjectEvidenceRequirements, ResearchPolicyBinding, VerifiedProjectInputPlan, WorkspaceConfig } from "./types.js";
 export declare const RESEARCH_AGENT_PROTOCOL_OVERHEAD_TOKENS: Record<AgentRoute["agent"], number>;
 export declare const RESEARCH_ESTIMATED_BYTES_PER_TOKEN = 3;
 export declare const RESEARCH_MAX_REPAIR_SOURCE_BYTES = 32000;
@@ -14,12 +15,20 @@ export interface EvidenceCoverageGap {
     alternativeCanSatisfyMinimumCoverage: boolean;
     minimumAction: string;
 }
-export declare function evaluateProjectPreflight(root: string, question: string, requirements: ProjectEvidenceRequirements | null, inputPlan: VerifiedProjectInputPlan | null): Promise<{
+export declare function evaluateProjectPreflight(root: string, question: string, requirements: ProjectEvidenceRequirements | null, inputPlan: VerifiedProjectInputPlan | null, options?: {
+    publicationPolicy?: ResearchPolicyBinding | null;
+    scientificDesign?: VerifiedScientificDesign | null;
+}): Promise<{
     preflightSha256: string;
     schemaVersion: 1;
     mode: import("./types.js").ResearchMode;
     questionSha256: string;
     evidenceRequirements: ProjectEvidenceRequirements | null;
+    scientificDesign: {
+        sha256: string;
+        projectId: string;
+        evaluation: import("./scientific-design.js").ScientificDesignEvaluation | null;
+    } | null;
     capabilities: {
         id: string;
         allowedHosts: string[];
@@ -122,6 +131,29 @@ export declare function evaluateProjectPreflight(root: string, question: string,
             review: number;
             repair: number;
         };
+        lifecycleReservation: {
+            enabled: boolean;
+            reviewCounts: {
+                earlyScientific: number;
+                finalPublication: number;
+                revisions: number;
+            };
+            phaseTokens: {
+                baseResearch: number;
+                earlyScientificReviews: number;
+                finalPublicationReviews: number;
+                revision: number;
+            };
+            phaseWallSeconds: {
+                baseResearch: number;
+                earlyScientificReviews: number;
+                finalPublicationReviews: number;
+                revision: number;
+            };
+            totalTokens: number;
+            totalWallSeconds: number;
+            estimatedMaxCostUsd: number | null;
+        };
     };
     executionPolicy: {
         producer: {

package/dist/research/workspace/preflight.js

@@ -1,6 +1,7 @@
 import { loadCapabilityDeclarations, verifyCapabilities } from "./capabilities.js";
 import { hasPublicInternetCapability } from "./external-skills.js";
 import { deriveDiscoveryPlan } from "./discovery-planning.js";
+import { evaluateScientificDesign, scientificDesignPolicyGaps, } from "./scientific-design.js";
 import { schemaForStage } from "./schemas.js";
 import { canonicalJson, sha256Text } from "./storage.js";
 import { loadWorkspaceConfig, verifyDoctorAttestation } from "./workspace.js";
@@ -16,7 +17,7 @@ export const RESEARCH_CLAUDE_STRUCTURED_OUTPUT_MAX_TURNS = 3;
 export const RESEARCH_BROKER_MAX_TURNS = 6;
 export const RESEARCH_REPAIR_MAX_TURNS = 1;
 const RESEARCH_PREFLIGHT_PROMPT_ALLOWANCE_TOKENS = 3_000;
-export async function evaluateProjectPreflight(root, question, requirements, inputPlan) {
+export async function evaluateProjectPreflight(root, question, requirements, inputPlan, options = {}) {
     const config = await loadWorkspaceConfig(root);
     const capabilities = await loadCapabilityDeclarations(root);
     const capabilityVerification = await verifyCapabilities(root);
@@ -47,8 +48,57 @@ export async function evaluateProjectPreflight(root, question, requirements, inp
             reservedAgentPackageCost(config.producer, packageTokens.synthesize, config) +
             reservedAgentPackageCost(config.reviewer, packageTokens.review, config))
         : null;
+    const lifecycleEnabled = Boolean(options.publicationPolicy);
+    const earlyScientificReviewCount = lifecycleEnabled ? 3 : 0;
+    const finalPublicationReviewCount = lifecycleEnabled ? 4 : 0;
+    const revisionCount = lifecycleEnabled ? 1 : 0;
+    const lifecycleTokenReservation = tokenReservation +
+        earlyScientificReviewCount * config.budget.earlyScientificReviewMaxTokens +
+        finalPublicationReviewCount * config.budget.finalPublicationReviewMaxTokens +
+        revisionCount * config.budget.revisionReserveTokens;
+    const lifecycleWallReservation = wallReservation +
+        earlyScientificReviewCount * config.budget.earlyScientificReviewMaxWallSeconds +
+        finalPublicationReviewCount * config.budget.finalPublicationReviewMaxWallSeconds +
+        revisionCount * config.budget.revisionReserveWallSeconds;
+    const lifecycleEstimatedMaxCostUsd = !lifecycleEnabled || estimatedMaxCostUsd === null
+        ? estimatedMaxCostUsd
+        : roundMoney(estimatedMaxCostUsd +
+            earlyScientificReviewCount *
+                reservedAgentPackageCost(config.reviewer, config.budget.earlyScientificReviewMaxTokens, config) +
+            finalPublicationReviewCount *
+                reservedAgentPackageCost(config.reviewer, config.budget.finalPublicationReviewMaxTokens, config) +
+            revisionCount *
+                Math.max(reservedAgentPackageCost(config.producer, config.budget.revisionReserveTokens, config), reservedAgentPackageCost(config.reviewer, config.budget.revisionReserveTokens, config)));
     const gaps = [];
     const coverageGaps = [];
+    const designEvaluation = options.scientificDesign
+        ? evaluateScientificDesign(options.scientificDesign.contract)
+        : null;
+    if (options.publicationPolicy && !options.scientificDesign) {
+        gaps.push("scientific-design-missing");
+    }
+    if (options.scientificDesign && !options.publicationPolicy) {
+        gaps.push("scientific-design-policy-missing");
+    }
+    if (options.publicationPolicy &&
+        options.scientificDesign &&
+        options.publicationPolicy.projectId !== options.scientificDesign.contract.projectId) {
+        gaps.push("scientific-design-policy-project-mismatch");
+    }
+    if (options.publicationPolicy?.targetJournal &&
+        options.scientificDesign &&
+        options.publicationPolicy.targetJournal.trim().toLocaleLowerCase("en-US") !==
+            options.scientificDesign.contract.identity.targetJournals.primary
+                .trim()
+                .toLocaleLowerCase("en-US")) {
+        gaps.push("scientific-design-policy-journal-mismatch");
+    }
+    if (designEvaluation) {
+        gaps.push(...designEvaluation.issueCodes.map((code) => `scientific-design:${code}`));
+    }
+    if (options.publicationPolicy && options.scientificDesign) {
+        appendScientificDesignContractGaps(gaps, options.scientificDesign.contract, options.publicationPolicy, requirements);
+    }
     if (config.mode === "production-research" && !requirements) {
         gaps.push("explicit-evidence-requirements-missing");
     }
@@ -94,6 +144,17 @@ export async function evaluateProjectPreflight(root, question, requirements, inp
     if (estimatedMaxCostUsd !== null && estimatedMaxCostUsd > config.budget.maxCostUsd) {
         gaps.push(`package-cost-reservations-exceed-total:${estimatedMaxCostUsd}/${config.budget.maxCostUsd}`);
     }
+    if (lifecycleEnabled && lifecycleTokenReservation > config.budget.maxTokens) {
+        gaps.push(`full-lifecycle-token-reservation-exceeds-total:${lifecycleTokenReservation}/${config.budget.maxTokens}`);
+    }
+    if (lifecycleEnabled && lifecycleWallReservation > config.budget.maxWallSeconds) {
+        gaps.push(`full-lifecycle-wall-reservation-exceeds-total:${lifecycleWallReservation}/${config.budget.maxWallSeconds}`);
+    }
+    if (lifecycleEnabled &&
+        lifecycleEstimatedMaxCostUsd !== null &&
+        lifecycleEstimatedMaxCostUsd > config.budget.maxCostUsd) {
+        gaps.push(`full-lifecycle-cost-reservation-exceeds-total:${lifecycleEstimatedMaxCostUsd}/${config.budget.maxCostUsd}`);
+    }
     const discoverOutputTokens = discoveryPlan?.recommendedOutputTokens ?? config.budget.maxOutputTokens;
     const stageOutputReservations = {
         discover: discoverOutputTokens,
@@ -169,6 +230,13 @@ export async function evaluateProjectPreflight(root, question, requirements, inp
         mode: config.mode,
         questionSha256: sha256Text(question),
         evidenceRequirements: requirements,
+        scientificDesign: options.scientificDesign === null || options.scientificDesign === undefined
+            ? null
+            : {
+                sha256: options.scientificDesign.sha256,
+                projectId: options.scientificDesign.contract.projectId,
+                evaluation: designEvaluation,
+            },
         capabilities: networkCapabilities,
         inputPlan: inputPlan === null
             ? null
@@ -228,6 +296,29 @@ export async function evaluateProjectPreflight(root, question, requirements, inp
             },
             preCallTokenReservations,
             maxTurns,
+            lifecycleReservation: {
+                enabled: lifecycleEnabled,
+                reviewCounts: {
+                    earlyScientific: earlyScientificReviewCount,
+                    finalPublication: finalPublicationReviewCount,
+                    revisions: revisionCount,
+                },
+                phaseTokens: {
+                    baseResearch: tokenReservation,
+                    earlyScientificReviews: earlyScientificReviewCount * config.budget.earlyScientificReviewMaxTokens,
+                    finalPublicationReviews: finalPublicationReviewCount * config.budget.finalPublicationReviewMaxTokens,
+                    revision: revisionCount * config.budget.revisionReserveTokens,
+                },
+                phaseWallSeconds: {
+                    baseResearch: wallReservation,
+                    earlyScientificReviews: earlyScientificReviewCount * config.budget.earlyScientificReviewMaxWallSeconds,
+                    finalPublicationReviews: finalPublicationReviewCount * config.budget.finalPublicationReviewMaxWallSeconds,
+                    revision: revisionCount * config.budget.revisionReserveWallSeconds,
+                },
+                totalTokens: lifecycleTokenReservation,
+                totalWallSeconds: lifecycleWallReservation,
+                estimatedMaxCostUsd: lifecycleEstimatedMaxCostUsd,
+            },
         },
         executionPolicy: {
             producer: {
@@ -374,6 +465,59 @@ function appendEvidencePlanGaps(gaps, coverageGaps, requirements, inputPlan, net
         gaps.push(`evidence-plan-dated-sources-insufficient:${plannedDatedCount}/${requirements.minDatedSources}`);
     }
 }
+function appendScientificDesignContractGaps(gaps, design, policy, requirements) {
+    const prefix = "scientific-design-contract:";
+    gaps.push(...scientificDesignPolicyGaps(design, policy).map((gap) => `${prefix}${gap}`));
+    if (policy.targetJournal) {
+        if (design.identity.targetJournals.approvalStatus !== "policy-approved") {
+            gaps.push(`${prefix}policy-journal-unapproved`);
+        }
+    }
+    else if (design.identity.targetJournals.approvalStatus !== "candidate-only") {
+        gaps.push(`${prefix}policy-journal-approval-unbound`);
+    }
+    const requiredRoles = design.evidenceRoles.filter((role) => role.required);
+    if (requirements) {
+        const mappedDimensions = new Set(requiredRoles.flatMap((role) => role.coverageDimensionIds));
+        const mappedSourceTypes = new Set(requiredRoles.flatMap((role) => role.sourceTypeRequirements));
+        for (const dimension of requirements.dimensions) {
+            if (!mappedDimensions.has(dimension)) {
+                gaps.push(`${prefix}evidence-dimension-uncovered:${dimension}`);
+            }
+        }
+        for (const sourceType of requirements.sourceTypes) {
+            if (!mappedSourceTypes.has(sourceType)) {
+                gaps.push(`${prefix}evidence-source-type-uncovered:${sourceType}`);
+            }
+        }
+        const independentFloor = requiredRoles.reduce((sum, role) => sum + role.minimumIndependentSources, 0);
+        const fullTextFloor = requiredRoles.reduce((sum, role) => sum + role.minimumFullText, 0);
+        const datedFloor = requiredRoles.reduce((sum, role) => sum + role.minimumDatedSources, 0);
+        if (independentFloor < requirements.minSources) {
+            gaps.push(`${prefix}evidence-source-floor-insufficient:${independentFloor}/${requirements.minSources}`);
+        }
+        if (fullTextFloor < requirements.minFullTextSources) {
+            gaps.push(`${prefix}evidence-fulltext-floor-insufficient:${fullTextFloor}/${requirements.minFullTextSources}`);
+        }
+        if (datedFloor < requirements.minDatedSources) {
+            gaps.push(`${prefix}evidence-dated-floor-insufficient:${datedFloor}/${requirements.minDatedSources}`);
+        }
+    }
+    if (policy.resolvedRules.includes("independent-validation-required")) {
+        const centralClaimIds = new Set(design.claims.filter((claim) => claim.role === "central").map((claim) => claim.id));
+        const centralPlans = design.validationPlans.filter((plan) => plan.claimIds.some((claimId) => centralClaimIds.has(claimId)));
+        for (const plan of centralPlans) {
+            if (!["available", "unavailable-scope-bounded"].includes(plan.independentValidation.status)) {
+                gaps.push(`${prefix}independent-validation-undispositioned:${plan.id}`);
+            }
+        }
+        for (const claimId of centralClaimIds) {
+            if (!centralPlans.some((plan) => plan.claimIds.includes(claimId))) {
+                gaps.push(`${prefix}independent-validation-unplanned:${claimId}`);
+            }
+        }
+    }
+}
 function capabilityMinimumAction(capabilityId) {
     if (capabilityId === "database.tiangong.report-search") {
         return "Rerun the setup Wizard, select tiangong.kb-report-search, review its license and exact endpoint, securely configure tiangong.report.api-key, apply the replacement immutable plan, and pass capability live doctor.";

package/dist/research/workspace/preflight.js.map

@@ -1 +1 @@
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package/dist/research/workspace/projects.d.ts

@@ -1,14 +1,41 @@
-import type { ProjectEvidenceRequirements, ProjectInput, ProjectState, WorkPackage, VerifiedProjectInputPlan } from "./types.js";
-export declare function initializeProject(root: string, projectId: string, question: string, evidenceRequirements?: ProjectEvidenceRequirements, budgetConfirmed?: boolean, inputPlan?: VerifiedProjectInputPlan): Promise<ProjectState>;
-export declare function addProjectInput(root: string, projectId: string, inputPath: string, role: ProjectInput["role"]): Promise<ProjectInput>;
+import { type VerifiedScientificDesign } from "./scientific-design.js";
+import type { AgentKind, ProjectEvidenceRequirements, ProjectInput, ProjectInputTrustStatus, ResearchPolicyBinding, ScientificDesignBinding, ScientificReviewRole, ProjectState, WorkPackage, VerifiedProjectInputPlan } from "./types.js";
+export declare function initializeProject(root: string, projectId: string, question: string, evidenceRequirements?: ProjectEvidenceRequirements, budgetConfirmed?: boolean, inputPlan?: VerifiedProjectInputPlan, publicationPolicy?: ResearchPolicyBinding, scientificDesignInput?: {
+    design: VerifiedScientificDesign;
+    producerAgent: AgentKind;
+    producerSessionId: string;
+}): Promise<ProjectState>;
+export declare function addProjectInput(root: string, projectId: string, inputPath: string, role: ProjectInput["role"], options?: {
+    trustStatus?: ProjectInputTrustStatus;
+    independentlyReproduced?: boolean;
+}): Promise<ProjectInput>;
 export declare function loadProject(root: string, projectId: string): Promise<ProjectState>;
 export declare function listProjects(root: string): Promise<ProjectState[]>;
 export declare function saveProject(root: string, project: ProjectState): Promise<void>;
 export declare function retryProjectPackage(root: string, projectId: string, packageId?: string): Promise<ProjectState>;
-export declare function forkProject(root: string, sourceProjectId: string, targetProjectId: string, resumeThrough?: "discover" | "acquire" | "analyze" | "synthesize"): Promise<ProjectState>;
+export declare function forkProject(root: string, sourceProjectId: string, targetProjectId: string, resumeThrough?: "discover" | "acquire" | "analyze" | "synthesize", scientificReapproval?: {
+    publicationPolicy: ResearchPolicyBinding;
+    scientificDesign: {
+        design: VerifiedScientificDesign;
+        producerAgent: AgentKind;
+        producerSessionId: string;
+    };
+}): Promise<ProjectState>;
 export declare function setProjectDisposition(root: string, projectId: string, disposition: "archived" | "abandoned", reason: string): Promise<ProjectState>;
-export declare function createProjectAddendum(root: string, sourceProjectId: string, targetProjectId: string): Promise<ProjectState>;
+export declare function createProjectAddendum(root: string, sourceProjectId: string, targetProjectId: string, scientificReapproval?: {
+    publicationPolicy: ResearchPolicyBinding;
+    scientificDesign: {
+        design: VerifiedScientificDesign;
+        producerAgent: AgentKind;
+        producerSessionId: string;
+    };
+}): Promise<ProjectState>;
 export declare function refreshProject(project: ProjectState): ProjectState;
 export declare function nextReadyPackage(project: ProjectState): WorkPackage | undefined;
+export declare function nextScientificGate(project: ProjectState): {
+    role: ScientificReviewRole;
+    blocksPackage: "discover" | "acquire" | "analyze";
+    status: ScientificDesignBinding["gates"][ScientificReviewRole]["status"];
+} | null;
 export declare function packageById(project: ProjectState, packageId: string): WorkPackage;
 export declare function normalizeEvidenceRequirements(value: ProjectEvidenceRequirements): ProjectEvidenceRequirements;