@tetrascience-npm/tetrascience-react-ui 0.7.0-beta.107.1 → 0.7.0-beta.128.1

package/dist/components/charts/ChromatogramChart/ChromatogramChart.js

@@ -1,227 +0,0 @@
-import { jsxs as Y, jsx as q } from "react/jsx-runtime";
-import U from "plotly.js-dist";
-import { useRef as J, useMemo as v, useEffect as K } from "react";
-import { seriesColor as Q } from "../../../utils/colors.js";
-import { useChartTooltip as V } from "../ChartTooltip/ChartTooltip.js";
-import { groupOverlappingPeaks as Z, createGroupAnnotations as $ } from "./annotations.js";
-import { createBoundaryMarkerTraces as X } from "./boundaryMarkers.js";
-import { CHROMATOGRAM_LAYOUT as s } from "./constants.js";
-import { validateSeriesData as w, applyBaselineCorrection as oo, processUserAnnotations as eo, collectPeaksWithBoundaryData as ro } from "./dataProcessing.js";
-import { detectPeaks as to } from "./peakDetection.js";
-import { usePlotlyTheme as no } from "../../../hooks/use-plotly-theme.js";
-const so = [], ko = ({
-  series: a,
-  width: y = 900,
-  height: h = 500,
-  title: f,
-  xAxisTitle: k = "Retention Time (min)",
-  yAxisTitle: I = "Signal (mAU)",
-  annotations: m = so,
-  xRange: x,
-  yRange: T,
-  showLegend: M = !0,
-  showGridX: N = !0,
-  showGridY: R = !0,
-  showMarkers: _ = !1,
-  markerSize: z = 4,
-  showCrosshairs: p = !1,
-  baselineCorrection: B = "none",
-  baselineWindowSize: E = 50,
-  peakDetectionOptions: l,
-  showPeakAreas: G = !1,
-  boundaryMarkers: O = "none",
-  annotationOverlapThreshold: b = 0.4,
-  showExportButton: C = !0
-}) => {
-  const d = l !== void 0, L = J(null), o = no(), { bindTooltip: S, tooltipElement: W } = V({
-    xLabel: k,
-    yLabel: I
-  }), n = v(() => a.map((e) => {
-    const t = w(e.x, e.y);
-    return {
-      ...e,
-      x: t.x,
-      y: oo(t.y, B, E)
-    };
-  }), [a, B, E]), A = v(() => {
-    if (m.length === 0 || n.length === 0)
-      return m;
-    const { x: e, y: t } = n[0];
-    return eo(m, e, t);
-  }, [m, n]), P = v(() => {
-    const e = [];
-    return d && l && n.forEach((t, i) => {
-      const u = to(t.x, t.y, l);
-      u.length > 0 && e.push({ peaks: u, seriesIndex: i });
-    }), e;
-  }, [n, d, l]);
-  return K(() => {
-    const e = L.current;
-    if (!e || a.length === 0) return;
-    const t = n.map((r, c) => {
-      const g = Q(c, r.color), H = {
-        x: r.x,
-        y: r.y,
-        type: "scatter",
-        mode: _ ? "lines+markers" : "lines",
-        name: r.name,
-        line: {
-          color: g,
-          width: 1.5
-        },
-        hoverinfo: "none"
-      };
-      return _ && (H.marker = {
-        size: z,
-        color: g
-      }), H;
-    });
-    if (O !== "none") {
-      const r = ro(P, A, n);
-      if (r.length > 0) {
-        const c = X(r);
-        t.push(...c);
-      }
-    }
-    const i = [];
-    A.forEach((r) => {
-      i.push({ peak: r, seriesIndex: -1 });
-    }), G && d && P.forEach(({ peaks: r, seriesIndex: c }) => {
-      r.forEach((g) => {
-        i.push({ peak: g, seriesIndex: c });
-      });
-    });
-    const u = Z(i, b), D = [];
-    for (const r of u)
-      D.push(...$(r));
-    const j = {
-      title: f ? {
-        text: f,
-        font: {
-          size: 20,
-          family: "Inter, sans-serif",
-          color: o.textColor
-        }
-      } : void 0,
-      width: y,
-      height: h,
-      margin: {
-        l: s.MARGIN_LEFT,
-        r: s.MARGIN_RIGHT,
-        b: s.MARGIN_BOTTOM,
-        t: f ? s.MARGIN_TOP_WITH_TITLE : s.MARGIN_TOP_NO_TITLE,
-        pad: s.MARGIN_PAD
-      },
-      paper_bgcolor: o.paperBg,
-      plot_bgcolor: o.plotBg,
-      font: { family: "Inter, sans-serif" },
-      hovermode: p ? "x" : "x unified",
-      dragmode: "zoom",
-      xaxis: {
-        title: {
-          text: k,
-          font: { size: 14, color: o.textSecondary, family: "Inter, sans-serif" },
-          standoff: 15
-        },
-        showgrid: N,
-        gridcolor: o.gridColor,
-        linecolor: o.lineColor,
-        linewidth: 1,
-        range: x,
-        autorange: !x,
-        zeroline: !1,
-        tickfont: { size: 12, color: o.textColor, family: "Inter, sans-serif" },
-        showspikes: p,
-        spikemode: "across",
-        spikesnap: "cursor",
-        spikecolor: o.spikeColor,
-        spikethickness: 1,
-        spikedash: "dot"
-      },
-      yaxis: {
-        title: {
-          text: I,
-          font: { size: 14, color: o.textSecondary, family: "Inter, sans-serif" },
-          standoff: 10
-        },
-        showgrid: R,
-        gridcolor: o.gridColor,
-        linecolor: o.lineColor,
-        linewidth: 1,
-        range: T,
-        autorange: !T,
-        zeroline: !1,
-        tickfont: { size: 12, color: o.textColor, family: "Inter, sans-serif" },
-        showspikes: p,
-        spikemode: "across",
-        spikesnap: "cursor",
-        spikecolor: o.spikeColor,
-        spikethickness: 1,
-        spikedash: "dot"
-      },
-      legend: {
-        x: 0.5,
-        y: -0.15,
-        xanchor: "center",
-        yanchor: "top",
-        orientation: "h",
-        font: { size: 12, color: o.textColor, family: "Inter, sans-serif" }
-      },
-      showlegend: M && a.length > 1,
-      annotations: D
-    }, F = {
-      responsive: !0,
-      displayModeBar: !0,
-      displaylogo: !1,
-      modeBarButtonsToRemove: [
-        "lasso2d",
-        "select2d",
-        ...C ? [] : ["toImage"]
-      ],
-      ...C && {
-        toImageButtonOptions: {
-          format: "png",
-          filename: "chromatogram",
-          width: y,
-          height: h
-        }
-      }
-    };
-    return U.newPlot(e, t, j, F), S(e), () => {
-      e && U.purge(e);
-    };
-  }, [
-    n,
-    P,
-    a.length,
-    y,
-    h,
-    f,
-    k,
-    I,
-    A,
-    x,
-    T,
-    M,
-    N,
-    R,
-    _,
-    z,
-    p,
-    d,
-    l,
-    G,
-    O,
-    b,
-    C,
-    o,
-    S
-  ]), /* @__PURE__ */ Y("div", { className: "chromatogram-chart-container relative", children: [
-    /* @__PURE__ */ q("div", { ref: L, style: { width: "100%", height: "100%" } }),
-    W
-  ] });
-};
-export {
-  ko as ChromatogramChart
-};
-//# sourceMappingURL=ChromatogramChart.js.map

package/dist/components/charts/ChromatogramChart/ChromatogramChart.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"ChromatogramChart.js","sources":["../../../../src/components/charts/ChromatogramChart/ChromatogramChart.tsx"],"sourcesContent":["import Plotly from \"plotly.js-dist\";\nimport React, { useEffect, useMemo, useRef } from \"react\";\n\nimport { seriesColor } from \"../../../utils/colors\";\nimport { useChartTooltip } from \"../ChartTooltip\";\n\nimport {\n  groupOverlappingPeaks,\n  createGroupAnnotations,\n} from \"./annotations\";\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT } from \"./constants\";\nimport {\n  validateSeriesData,\n  applyBaselineCorrection,\n  collectPeaksWithBoundaryData,\n  processUserAnnotations,\n} from \"./dataProcessing\";\nimport { detectPeaks } from \"./peakDetection\";\n\nimport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n  PeakWithMeta,\n} from \"./types\";\n\nimport { usePlotlyTheme } from \"@/hooks/use-plotly-theme\";\n\n// Re-export types for external use\nexport type {\n  ChromatogramSeries,\n  PeakAnnotation,\n  BaselineCorrectionMethod,\n  BoundaryMarkerStyle,\n  BoundaryMarkerType,\n  PeakDetectionOptions,\n  ChromatogramChartProps,\n};\n\n\n// Stable default so the no-annotations case keeps a constant identity; an\n// inline `[]` default would change every render, re-running the plot effect\n// (and tearing down the hover tooltip) on each re-render.\nconst EMPTY_ANNOTATIONS: PeakAnnotation[] = [];\n\nconst ChromatogramChart: React.FC<ChromatogramChartProps> = ({\n  series,\n  width = 900,\n  height = 500,\n  title,\n  xAxisTitle = \"Retention Time (min)\",\n  yAxisTitle = \"Signal (mAU)\",\n  annotations = EMPTY_ANNOTATIONS,\n  xRange,\n  yRange,\n  showLegend = true,\n  showGridX = true,\n  showGridY = true,\n  showMarkers = false,\n  markerSize = 4,\n  showCrosshairs = false,\n  baselineCorrection = \"none\",\n  baselineWindowSize = 50,\n  peakDetectionOptions,\n  showPeakAreas = false,\n  boundaryMarkers = \"none\",\n  annotationOverlapThreshold = 0.4,\n  showExportButton = true,\n}) => {\n  // Derive peak detection state from options\n  const enablePeakDetection = peakDetectionOptions !== undefined;\n  const plotRef = useRef<HTMLDivElement>(null);\n  const theme = usePlotlyTheme();\n  const { bindTooltip, tooltipElement } = useChartTooltip({\n    xLabel: xAxisTitle,\n    yLabel: yAxisTitle,\n  });\n\n  // Memoize processed series with baseline correction\n  const processedSeries = useMemo(() => {\n    return series.map((s) => {\n      const validated = validateSeriesData(s.x, s.y);\n      return {\n        ...s,\n        x: validated.x,\n        y: applyBaselineCorrection(validated.y, baselineCorrection, baselineWindowSize),\n      };\n    });\n  }, [series, baselineCorrection, baselineWindowSize]);\n\n  // Process user annotations to convert startX/endX to indices and compute areas\n  const processedAnnotations = useMemo(() => {\n    if (annotations.length === 0 || processedSeries.length === 0) {\n      return annotations;\n    }\n    // Use first series data for index lookup (user annotations apply to first series)\n    const { x, y } = processedSeries[0];\n    return processUserAnnotations(annotations, x, y);\n  }, [annotations, processedSeries]);\n\n  // Memoize peak detection results\n  const allDetectedPeaks = useMemo(() => {\n    const peaks: { peaks: PeakAnnotation[]; seriesIndex: number }[] = [];\n    if (enablePeakDetection && peakDetectionOptions) {\n      processedSeries.forEach((s, index) => {\n        const detected = detectPeaks(s.x, s.y, peakDetectionOptions);\n        if (detected.length > 0) {\n          peaks.push({ peaks: detected, seriesIndex: index });\n        }\n      });\n    }\n    return peaks;\n  }, [processedSeries, enablePeakDetection, peakDetectionOptions]);\n\n  useEffect(() => {\n    const currentRef = plotRef.current;\n    if (!currentRef || series.length === 0) return;\n\n    // Build trace data with auto-assigned colors\n    const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n      const traceColor = seriesColor(index, s.color);\n\n      const trace: Plotly.Data = {\n        x: s.x,\n        y: s.y,\n        type: \"scatter\" as const,\n        mode: showMarkers ? \"lines+markers\" as const : \"lines\" as const,\n        name: s.name,\n        line: {\n          color: traceColor,\n          width: 1.5,\n        },\n        hoverinfo: \"none\" as const,\n      };\n      if (showMarkers) {\n        trace.marker = {\n          size: markerSize,\n          color: traceColor,\n        };\n      }\n      return trace;\n    });\n\n    // Add peak boundary markers if enabled\n    if (boundaryMarkers !== \"none\") {\n      const peaksWithData = collectPeaksWithBoundaryData(allDetectedPeaks, processedAnnotations, processedSeries);\n      if (peaksWithData.length > 0) {\n        const boundaryTraces = createBoundaryMarkerTraces(peaksWithData);\n        plotData.push(...boundaryTraces);\n      }\n    }\n\n    // Collect all peaks for unified staggering logic\n    const allPeaksWithMeta: PeakWithMeta[] = [];\n\n    // Add user-defined annotations (seriesIndex -1 indicates user-defined)\n    processedAnnotations.forEach((ann) => {\n      allPeaksWithMeta.push({ peak: ann, seriesIndex: -1 });\n    });\n\n    // Add auto-detected peaks if enabled\n    if (showPeakAreas && enablePeakDetection) {\n      allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n        peaks.forEach((peak) => {\n          allPeaksWithMeta.push({ peak, seriesIndex });\n        });\n      });\n    }\n\n    // Group all overlapping peaks and create annotations with staggering\n    const groups = groupOverlappingPeaks(allPeaksWithMeta, annotationOverlapThreshold);\n    const plotlyAnnotations: Partial<Plotly.Annotations>[] = [];\n\n    for (const group of groups) {\n      plotlyAnnotations.push(...createGroupAnnotations(group));\n    }\n\n    const layout: Partial<Plotly.Layout> = {\n      title: title\n        ? {\n            text: title,\n            font: {\n              size: 20,\n              family: \"Inter, sans-serif\",\n              color: theme.textColor,\n            },\n          }\n        : undefined,\n      width,\n      height,\n      margin: {\n        l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n        r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n        b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n        t: title ? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n        pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n      },\n      paper_bgcolor: theme.paperBg,\n      plot_bgcolor: theme.plotBg,\n      font: { family: \"Inter, sans-serif\" },\n      hovermode: showCrosshairs ? \"x\" as const : \"x unified\" as const,\n      dragmode: \"zoom\" as const,\n      xaxis: {\n        title: {\n          text: xAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 15,\n        },\n        showgrid: showGridX,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: xRange,\n        autorange: !xRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      yaxis: {\n        title: {\n          text: yAxisTitle,\n          font: { size: 14, color: theme.textSecondary, family: \"Inter, sans-serif\" },\n          standoff: 10,\n        },\n        showgrid: showGridY,\n        gridcolor: theme.gridColor,\n        linecolor: theme.lineColor,\n        linewidth: 1,\n        range: yRange,\n        autorange: !yRange,\n        zeroline: false,\n        tickfont: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n        showspikes: showCrosshairs,\n        spikemode: \"across\" as const,\n        spikesnap: \"cursor\" as const,\n        spikecolor: theme.spikeColor,\n        spikethickness: 1,\n        spikedash: \"dot\" as const,\n      },\n      legend: {\n        x: 0.5,\n        y: -0.15,\n        xanchor: \"center\" as const,\n        yanchor: \"top\" as const,\n        orientation: \"h\" as const,\n        font: { size: 12, color: theme.textColor, family: \"Inter, sans-serif\" },\n      },\n      showlegend: showLegend && series.length > 1,\n      annotations: plotlyAnnotations,\n    };\n\n    const config: Partial<Plotly.Config> = {\n      responsive: true,\n      displayModeBar: true,\n      displaylogo: false,\n      modeBarButtonsToRemove: [\n        \"lasso2d\",\n        \"select2d\",\n        ...(showExportButton ? [] : [\"toImage\"] as Plotly.ModeBarDefaultButtons[]),\n      ] as Plotly.ModeBarDefaultButtons[],\n      ...(showExportButton && {\n        toImageButtonOptions: {\n          format: \"png\",\n          filename: \"chromatogram\",\n          width: width,\n          height: height,\n        },\n      }),\n    };\n\n    Plotly.newPlot(currentRef, plotData, layout, config);\n    bindTooltip(currentRef);\n\n    return () => {\n      if (currentRef) {\n        Plotly.purge(currentRef);\n      }\n    };\n  }, [\n    processedSeries, allDetectedPeaks, series.length, width, height, title, xAxisTitle, yAxisTitle,\n    processedAnnotations, xRange, yRange, showLegend, showGridX, showGridY, showMarkers, markerSize,\n    showCrosshairs, enablePeakDetection, peakDetectionOptions, showPeakAreas, boundaryMarkers,\n    annotationOverlapThreshold, showExportButton, theme, bindTooltip,\n  ]);\n\n  return (\n    <div className=\"chromatogram-chart-container relative\">\n      <div ref={plotRef} style={{ width: \"100%\", height: \"100%\" }} />\n      {tooltipElement}\n    </div>\n  );\n};\n\nexport { ChromatogramChart 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package/dist/components/charts/ChromatogramChart/annotations.cjs

@@ -1,2 +0,0 @@
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-//# sourceMappingURL=annotations.cjs.map

package/dist/components/charts/ChromatogramChart/annotations.cjs.map

@@ -1 +0,0 @@
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CHROMATOGRAM_ANNOTATION.USER_ANNOTATION_COLOR\n    : seriesColor(seriesIndex);\n  const textColor = isUserDefined\n    ? CHROMATOGRAM_ANNOTATION.USER_ANNOTATION_TEXT_COLOR\n    : color;\n\n  // Use provided text or auto-generate from computed area\n  const text = peak.text ?? (peak._computed?.area === undefined ? \"\" : `Area: ${peak._computed.area.toFixed(2)}`);\n\n  // For user-defined annotations, respect their ax/ay if provided\n  const ax = isUserDefined && peak.ax !== undefined ? peak.ax : slot.ax;\n  const ay = isUserDefined && peak.ay !== undefined ? peak.ay : slot.ay;\n\n  return {\n    x: peak.x,\n    y: peak.y,\n    text,\n    showarrow: true,\n    arrowhead: 2,\n    arrowsize: 1,\n    arrowwidth: 1,\n    arrowcolor: color,\n    ax,\n    ay,\n    font: {\n      size: isUserDefined\n        ? 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package/dist/components/charts/ChromatogramChart/annotations.js

@@ -1,73 +0,0 @@
-import { seriesColor as x } from "../../../utils/colors.js";
-import { CHROMATOGRAM_ANNOTATION as i } from "./constants.js";
-const c = {
-  default: { ax: 0, ay: -35 },
-  overlap: [
-    { ax: 50, ay: -35 },
-    // Right, level 1
-    { ax: -60, ay: -35 },
-    // Left, level 1
-    { ax: 70, ay: -55 },
-    // Right, level 2
-    { ax: -80, ay: -55 },
-    // Left, level 2
-    { ax: 50, ay: -75 },
-    // Right, level 3
-    { ax: -60, ay: -75 }
-    // Left, level 3
-  ]
-};
-function d(r, n) {
-  const e = [...r].sort((a, s) => a.peak.x - s.peak.x), o = [];
-  let t = [];
-  for (const a of e) {
-    if (t.length === 0) {
-      t.push(a);
-      continue;
-    }
-    const s = t[t.length - 1];
-    Math.abs(a.peak.x - s.peak.x) < n ? t.push(a) : (o.push(t), t = [a]);
-  }
-  return t.length > 0 && o.push(t), o;
-}
-function u(r, n, e) {
-  const o = n === -1, t = o ? i.USER_ANNOTATION_COLOR : x(n), a = o ? i.USER_ANNOTATION_TEXT_COLOR : t, s = r.text ?? (r._computed?.area === void 0 ? "" : `Area: ${r._computed.area.toFixed(2)}`), O = o && r.ax !== void 0 ? r.ax : e.ax, l = o && r.ay !== void 0 ? r.ay : e.ay;
-  return {
-    x: r.x,
-    y: r.y,
-    text: s,
-    showarrow: !0,
-    arrowhead: 2,
-    arrowsize: 1,
-    arrowwidth: 1,
-    arrowcolor: t,
-    ax: O,
-    ay: l,
-    font: {
-      size: o ? i.USER_ANNOTATION_FONT_SIZE : i.AUTO_ANNOTATION_FONT_SIZE,
-      color: a,
-      family: "Inter, sans-serif"
-    },
-    bgcolor: i.BACKGROUND_COLOR,
-    borderpad: 2,
-    bordercolor: o ? void 0 : t,
-    borderwidth: o ? 0 : 1
-  };
-}
-function p(r) {
-  if (r.length === 1) {
-    const { peak: e, seriesIndex: o } = r[0];
-    return [u(e, o, c.default)];
-  }
-  return [...r].sort((e, o) => e.peak.y - o.peak.y).map(({ peak: e, seriesIndex: o }, t) => {
-    const a = c.overlap[t % c.overlap.length];
-    return u(e, o, a);
-  });
-}
-export {
-  c as ANNOTATION_SLOTS,
-  p as createGroupAnnotations,
-  u as createPeakAnnotation,
-  d as groupOverlappingPeaks
-};
-//# sourceMappingURL=annotations.js.map

package/dist/components/charts/ChromatogramChart/annotations.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"annotations.js","sources":["../../../../src/components/charts/ChromatogramChart/annotations.ts"],"sourcesContent":["/**\n * Annotation utilities for ChromatogramChart\n */\n\nimport { seriesColor } from \"../../../utils/colors\";\n\nimport { CHROMATOGRAM_ANNOTATION } from \"./constants\";\n\nimport type { PeakAnnotation, PeakWithMeta } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/**\n * Annotation slot positions for peak labels\n */\nexport const ANNOTATION_SLOTS = {\n  default: { ax: 0, ay: -35 },\n  overlap: [\n    { ax: 50, ay: -35 }, // Right, level 1\n    { ax: -60, ay: -35 }, // Left, level 1\n    { ax: 70, ay: -55 }, // Right, level 2\n    { ax: -80, ay: -55 }, // Left, level 2\n    { ax: 50, ay: -75 }, // Right, level 3\n    { ax: -60, ay: -75 }, // Left, level 3\n  ],\n};\n\n/**\n * Group overlapping peaks by retention time (x) proximity\n */\nexport function groupOverlappingPeaks(\n  peaksWithMeta: PeakWithMeta[],\n  overlapThreshold: number\n): PeakWithMeta[][] {\n  const sorted = [...peaksWithMeta].sort((a, b) => a.peak.x - b.peak.x);\n\n  const groups: PeakWithMeta[][] = [];\n  let currentGroup: PeakWithMeta[] = [];\n\n  for (const current of sorted) {\n    if (currentGroup.length === 0) {\n      currentGroup.push(current);\n      continue;\n    }\n\n    const lastInGroup = currentGroup[currentGroup.length - 1];\n    const timeDiff = Math.abs(current.peak.x - lastInGroup.peak.x);\n\n    if (timeDiff < overlapThreshold) {\n      currentGroup.push(current);\n    } else {\n      groups.push(currentGroup);\n      currentGroup = [current];\n    }\n  }\n\n  if (currentGroup.length > 0) {\n    groups.push(currentGroup);\n  }\n\n  return groups;\n}\n\n/**\n * Create a Plotly annotation for a peak.\n * seriesIndex of -1 indicates a user-defined annotation (uses grey/black styling).\n */\nexport function createPeakAnnotation(\n  peak: PeakAnnotation,\n  seriesIndex: number,\n  slot: { ax: number; ay: number }\n): Partial<Plotly.Annotations> {\n  const isUserDefined = seriesIndex === -1;\n  const color = isUserDefined\n    ? 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package/dist/components/charts/ChromatogramChart/boundaryMarkers.cjs

@@ -1,2 +0,0 @@
-"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const f=require("../../../utils/colors.cjs"),m=-5,y=-12,c=-16;function d(o,e,t,r){return t==="none"?[]:[{x:[o],y:[e],type:"scatter",mode:"markers",marker:{symbol:t==="diamond"?"diamond":"triangle-up",size:8,color:r},showlegend:!1,hoverinfo:"skip"}]}function T(o){const e=[];for(const{peaks:t,seriesIndex:r,x:s}of o){const a=f.seriesColor(r),i=m+r*c,u=y+r*c;for(const n of t){const k=n._computed?.startIndex??0,M=n._computed?.endIndex??0,l=s[k],p=s[M],R=n.startMarker??"triangle",_=n.endMarker??"diamond";e.push(...d(l,i,R,a)),e.push(...d(p,u,_,a))}}return e}exports.createBoundaryMarkerTraces=T;
-//# sourceMappingURL=boundaryMarkers.cjs.map

package/dist/components/charts/ChromatogramChart/boundaryMarkers.cjs.map

@@ -1 +0,0 @@
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package/dist/components/charts/ChromatogramChart/boundaryMarkers.js

@@ -1,34 +0,0 @@
-import { seriesColor as m } from "../../../utils/colors.js";
-const x = -5, l = -12, c = -16;
-function d(o, e, t, r) {
-  return t === "none" ? [] : [
-    {
-      x: [o],
-      y: [e],
-      type: "scatter",
-      mode: "markers",
-      marker: {
-        symbol: t === "diamond" ? "diamond" : "triangle-up",
-        size: 8,
-        color: r
-      },
-      showlegend: !1,
-      hoverinfo: "skip"
-    }
-  ];
-}
-function E(o) {
-  const e = [];
-  for (const { peaks: t, seriesIndex: r, x: s } of o) {
-    const a = m(r), i = x + r * c, k = l + r * c;
-    for (const n of t) {
-      const p = n._computed?.startIndex ?? 0, u = n._computed?.endIndex ?? 0, M = s[p], R = s[u], _ = n.startMarker ?? "triangle", f = n.endMarker ?? "diamond";
-      e.push(...d(M, i, _, a)), e.push(...d(R, k, f, a));
-    }
-  }
-  return e;
-}
-export {
-  E as createBoundaryMarkerTraces
-};
-//# sourceMappingURL=boundaryMarkers.js.map

package/dist/components/charts/ChromatogramChart/boundaryMarkers.js.map

@@ -1 +0,0 @@
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package/dist/components/charts/ChromatogramChart/constants.cjs.map

@@ -1 +0,0 @@
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package/dist/components/charts/ChromatogramChart/constants.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"constants.js","sources":["../../../../src/components/charts/ChromatogramChart/constants.ts"],"sourcesContent":["/**\n * Constants for ChromatogramChart component\n */\n\n/**\n * Layout constants for chart margins and spacing\n */\nexport const CHROMATOGRAM_LAYOUT = {\n  /** Left margin in pixels */\n  MARGIN_LEFT: 70,\n  /** Right margin in pixels */\n  MARGIN_RIGHT: 30,\n  /** Bottom margin in pixels */\n  MARGIN_BOTTOM: 60,\n  /** Top margin with title in pixels */\n  MARGIN_TOP_WITH_TITLE: 50,\n  /** Top margin without title in pixels */\n  MARGIN_TOP_NO_TITLE: 30,\n  /** Padding around plot area */\n  MARGIN_PAD: 5,\n} as const;\n\n/**\n * Annotation constants for peak labels and markers\n */\nexport const CHROMATOGRAM_ANNOTATION = {\n  /** Default vertical offset for annotation arrows (negative = above point) */\n  DEFAULT_ARROW_OFFSET_Y: -30,\n  /** Font size for user-defined annotations */\n  USER_ANNOTATION_FONT_SIZE: 11,\n  /** Font size for auto-detected peak annotations */\n  AUTO_ANNOTATION_FONT_SIZE: 10,\n  /** Arrow color for user-defined annotations (grey 500) */\n  USER_ANNOTATION_COLOR: \"rgba(100, 116, 139, 1)\",\n  /** Text color for user-defined annotations (black 900) */\n  USER_ANNOTATION_TEXT_COLOR: \"rgba(26, 26, 26, 1)\",\n  /** Background color behind annotation text */\n  BACKGROUND_COLOR: \"#ffffff\",\n} as const;\n\n"],"names":["CHROMATOGRAM_LAYOUT","CHROMATOGRAM_ANNOTATION"],"mappings":"AAOO,MAAMA,IAAsB;AAAA;AAAA,EAEjC,aAAa;AAAA;AAAA,EAEb,cAAc;AAAA;AAAA,EAEd,eAAe;AAAA;AAAA,EAEf,uBAAuB;AAAA;AAAA,EAEvB,qBAAqB;AAAA;AAAA,EAErB,YAAY;AACd,GAKaC,IAA0B;AAAA;AAAA,EAIrC,2BAA2B;AAAA;AAAA,EAE3B,2BAA2B;AAAA;AAAA,EAE3B,uBAAuB;AAAA;AAAA,EAEvB,4BAA4B;AAAA;AAAA,EAE5B,kBAAkB;AACpB;"}

package/dist/components/charts/ChromatogramChart/dataProcessing.cjs

@@ -1,2 +0,0 @@
-"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const u=require("./peakDetection.cjs");function c(t,o){if(t.length===0||t.length===1)return 0;let n=0,e=t.length-1;for(;n<e;){const l=Math.floor((n+e)/2);t[l]<o?n=l+1:e=l}return n>0&&Math.abs(t[n-1]-o)<Math.abs(t[n]-o)?n-1:n}function d(t,o,n){return t.map(e=>{if(e.startX!==void 0&&e.endX!==void 0){const l=c(o,e.startX),i=c(o,e.endX),a=c(o,e.x),s=e._computed?.area??u.calculatePeakArea(o,n,l,i);return{...e,_computed:{...e._computed,index:a,startIndex:l,endIndex:i,area:s}}}return e})}function h(t,o,n){const e=[];t.forEach(({peaks:i,seriesIndex:a})=>{e.push({peaks:i,seriesIndex:a,x:n[a].x,y:n[a].y})});const l=o.filter(i=>i._computed?.startIndex!==void 0&&i._computed?.endIndex!==void 0);return l.length>0&&n.length>0&&e.push({peaks:l,seriesIndex:0,x:n[0].x,y:n[0].y}),e}function f(t,o){const n=Math.min(t.length,o.length),e=t.slice(0,n),i=o.slice(0,n).map(s=>Number.isFinite(s)?s:0);return{x:e.map(s=>Number.isFinite(s)?s:0),y:i}}function p(t,o,n=50){if(o==="none"||t.length===0)return t;if(o==="linear"){if(t.length===1)return[0];const e=(t[t.length-1]-t[0])/(t.length-1);return t.map((l,i)=>l-(t[0]+e*i))}if(o==="rolling"){const e=[],l=Math.floor(n/2);for(let i=0;i<t.length;i++){const a=Math.max(0,i-l),s=Math.min(t.length,i+l+1),r=t.slice(a,s);e.push(Math.min(...r))}return t.map((i,a)=>i-e[a])}return t}exports.applyBaselineCorrection=p;exports.collectPeaksWithBoundaryData=h;exports.findClosestIndex=c;exports.processUserAnnotations=d;exports.validateSeriesData=f;
-//# sourceMappingURL=dataProcessing.cjs.map

package/dist/components/charts/ChromatogramChart/dataProcessing.cjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"dataProcessing.cjs","sources":["../../../../src/components/charts/ChromatogramChart/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for ChromatogramChart\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? calculatePeakArea(xArray, yArray, startIndex, endIndex);\n\n      return {\n        ...ann,\n        _computed: {\n          ...ann._computed,\n          index,\n          startIndex,\n          endIndex,\n          area,\n        },\n      };\n    }\n    return ann;\n  });\n}\n\n/**\n * Collect peaks with boundary information from both auto-detected peaks and user-provided annotations.\n * User-provided annotations with startIndex/endIndex or startX/endX are included for boundary marker rendering.\n */\nexport function collectPeaksWithBoundaryData(\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[],\n  annotations: PeakAnnotation[],\n  processedSeries: { x: number[]; y: number[] }[]\n): PeakDataWithSeries[] {\n  const peaksWithData: PeakDataWithSeries[] = [];\n\n  // Add auto-detected peaks\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    peaksWithData.push({\n      peaks,\n      seriesIndex,\n      x: processedSeries[seriesIndex].x,\n      y: processedSeries[seriesIndex].y,\n    });\n  });\n\n  // Add user-provided annotations that have boundary info (_computed.startIndex and _computed.endIndex)\n  // Note: annotations with startX/endX should already be processed to have _computed fields\n  const annotationsWithBoundaries = annotations.filter(\n    (ann) => ann._computed?.startIndex !== undefined && ann._computed?.endIndex !== undefined\n  );\n  if (annotationsWithBoundaries.length > 0 && processedSeries.length > 0) {\n    peaksWithData.push({\n      peaks: annotationsWithBoundaries,\n      seriesIndex: 0, // User annotations apply to first series by default\n      x: processedSeries[0].x,\n      y: processedSeries[0].y,\n    });\n  }\n\n  return peaksWithData;\n}\n\n/**\n * Build the extra content for Plotly hovertemplate from series metadata.\n * Displays all metadata fields as key: value pairs.\n */\nexport function buildHoverExtraContent(\n  seriesName: string,\n  metadata?: Record<string, unknown>\n): string {\n  if (!metadata) return seriesName;\n\n  const metaLines: string[] = [];\n  for (const [key, value] of Object.entries(metadata)) {\n    if (value !== undefined && value !== null && value !== \"\") {\n      // Format the key as Title Case (e.g., \"sampleName\" -> \"Sample Name\")\n      const formattedKey = key\n        .replace(/([A-Z])/g, \" $1\")\n        .replace(/^./, (s) => s.toUpperCase())\n        .trim();\n      metaLines.push(`${formattedKey}: ${String(value)}`);\n    }\n  }\n\n  if (metaLines.length > 0) {\n    return `${seriesName}<br>${metaLines.join(\"<br>\")}`;\n  }\n  return seriesName;\n}\n\n/**\n * Validate and sanitize series data.\n * - Ensures x and y arrays have the same length (truncates to shorter)\n * - Replaces NaN and Infinity values with 0\n */\nexport function validateSeriesData(\n  x: number[],\n  y: number[]\n): { x: number[]; y: number[] } {\n  // Ensure arrays have same length\n  const length = Math.min(x.length, y.length);\n  const validX = x.slice(0, length);\n  const validY = y.slice(0, length);\n\n  // Sanitize NaN and Infinity values\n  const sanitizedY = validY.map((val) => (Number.isFinite(val) ? val : 0));\n  const sanitizedX = validX.map((val) => (Number.isFinite(val) ? val : 0));\n\n  return { x: sanitizedX, y: sanitizedY };\n}\n\n/**\n * Apply baseline correction to signal data\n */\nexport function applyBaselineCorrection(\n  y: number[],\n  method: BaselineCorrectionMethod,\n  windowSize: number = 50\n): number[] {\n  if (method === \"none\" || y.length === 0) return y;\n\n  if (method === \"linear\") {\n    // Linear baseline from first to last point\n    // Handle single-point case to avoid division by zero\n    if (y.length === 1) {\n      return [0]; // Single point baseline-corrected to zero\n    }\n    const slope = (y[y.length - 1] - y[0]) / (y.length - 1);\n    return y.map((val, i) => val - (y[0] + slope * i));\n  }\n\n  if (method === \"rolling\") {\n    // Rolling minimum baseline\n    const baseline: number[] = [];\n    const halfWindow = Math.floor(windowSize / 2);\n\n    for (let i = 0; i < y.length; i++) {\n      const start = Math.max(0, i - halfWindow);\n      const end = Math.min(y.length, i + halfWindow + 1);\n      const windowSlice = y.slice(start, end);\n      baseline.push(Math.min(...windowSlice));\n    }\n\n    return y.map((val, i) => val - baseline[i]);\n  }\n\n  return y;\n}\n\n"],"names":["findClosestIndex","arr","target","left","right","mid","processUserAnnotations","annotations","xArray","yArray","ann","startIndex","endIndex","index","area","calculatePeakArea","collectPeaksWithBoundaryData","allDetectedPeaks","processedSeries","peaksWithData","peaks","seriesIndex","annotationsWithBoundaries","validateSeriesData","x","y","length","validX","sanitizedY","val","applyBaselineCorrection","method","windowSize","slope","baseline","halfWindow","start","end","windowSlice","i"],"mappings":"uHAsBO,SAASA,EAAiBC,EAAeC,EAAwB,CAEtE,GADID,EAAI,SAAW,GACfA,EAAI,SAAW,EAAG,MAAO,GAE7B,IAAIE,EAAO,EACPC,EAAQH,EAAI,OAAS,EAEzB,KAAOE,EAAOC,GAAO,CACnB,MAAMC,EAAM,KAAK,OAAOF,EAAOC,GAAS,CAAC,EACrCH,EAAII,CAAG,EAAIH,EACbC,EAAOE,EAAM,EAEbD,EAAQC,CAEZ,CAGA,OAAIF,EAAO,GAAK,KAAK,IAAIF,EAAIE,EAAO,CAAC,EAAID,CAAM,EAAI,KAAK,IAAID,EAAIE,CAAI,EAAID,CAAM,EACrEC,EAAO,EAETA,CACT,CAMO,SAASG,EACdC,EACAC,EACAC,EACkB,CAClB,OAAOF,EAAY,IAAKG,GAAQ,CAE9B,GAAIA,EAAI,SAAW,QAAaA,EAAI,OAAS,OAAW,CACtD,MAAMC,EAAaX,EAAiBQ,EAAQE,EAAI,MAAM,EAChDE,EAAWZ,EAAiBQ,EAAQE,EAAI,IAAI,EAC5CG,EAAQb,EAAiBQ,EAAQE,EAAI,CAAC,EAGtCI,EAAOJ,EAAI,WAAW,MAAQK,EAAAA,kBAAkBP,EAAQC,EAAQE,EAAYC,CAAQ,EAE1F,MAAO,CACL,GAAGF,EACH,UAAW,CACT,GAAGA,EAAI,UACP,MAAAG,EACA,WAAAF,EACA,SAAAC,EACA,KAAAE,CAAA,CACF,CAEJ,CACA,OAAOJ,CACT,CAAC,CACH,CAMO,SAASM,EACdC,EACAV,EACAW,EACsB,CACtB,MAAMC,EAAsC,CAAA,EAG5CF,EAAiB,QAAQ,CAAC,CAAE,MAAAG,EAAO,YAAAC,KAAkB,CACnDF,EAAc,KAAK,CACjB,MAAAC,EACA,YAAAC,EACA,EAAGH,EAAgBG,CAAW,EAAE,EAChC,EAAGH,EAAgBG,CAAW,EAAE,CAAA,CACjC,CACH,CAAC,EAID,MAAMC,EAA4Bf,EAAY,OAC3CG,GAAQA,EAAI,WAAW,aAAe,QAAaA,EAAI,WAAW,WAAa,MAAA,EAElF,OAAIY,EAA0B,OAAS,GAAKJ,EAAgB,OAAS,GACnEC,EAAc,KAAK,CACjB,MAAOG,EACP,YAAa,EACb,EAAGJ,EAAgB,CAAC,EAAE,EACtB,EAAGA,EAAgB,CAAC,EAAE,CAAA,CACvB,EAGIC,CACT,CAmCO,SAASI,EACdC,EACAC,EAC8B,CAE9B,MAAMC,EAAS,KAAK,IAAIF,EAAE,OAAQC,EAAE,MAAM,EACpCE,EAASH,EAAE,MAAM,EAAGE,CAAM,EAI1BE,EAHSH,EAAE,MAAM,EAAGC,CAAM,EAGN,IAAKG,GAAS,OAAO,SAASA,CAAG,EAAIA,EAAM,CAAE,EAGvE,MAAO,CAAE,EAFUF,EAAO,IAAKE,GAAS,OAAO,SAASA,CAAG,EAAIA,EAAM,CAAE,EAE/C,EAAGD,CAAA,CAC7B,CAKO,SAASE,EACdL,EACAM,EACAC,EAAqB,GACX,CACV,GAAID,IAAW,QAAUN,EAAE,SAAW,EAAG,OAAOA,EAEhD,GAAIM,IAAW,SAAU,CAGvB,GAAIN,EAAE,SAAW,EACf,MAAO,CAAC,CAAC,EAEX,MAAMQ,GAASR,EAAEA,EAAE,OAAS,CAAC,EAAIA,EAAE,CAAC,IAAMA,EAAE,OAAS,GACrD,OAAOA,EAAE,IAAI,CAACI,EAAK,IAAMA,GAAOJ,EAAE,CAAC,EAAIQ,EAAQ,EAAE,CACnD,CAEA,GAAIF,IAAW,UAAW,CAExB,MAAMG,EAAqB,CAAA,EACrBC,EAAa,KAAK,MAAMH,EAAa,CAAC,EAE5C,QAAS,EAAI,EAAG,EAAIP,EAAE,OAAQ,IAAK,CACjC,MAAMW,EAAQ,KAAK,IAAI,EAAG,EAAID,CAAU,EAClCE,EAAM,KAAK,IAAIZ,EAAE,OAAQ,EAAIU,EAAa,CAAC,EAC3CG,EAAcb,EAAE,MAAMW,EAAOC,CAAG,EACtCH,EAAS,KAAK,KAAK,IAAI,GAAGI,CAAW,CAAC,CACxC,CAEA,OAAOb,EAAE,IAAI,CAACI,EAAKU,IAAMV,EAAMK,EAASK,CAAC,CAAC,CAC5C,CAEA,OAAOd,CACT"}

package/dist/components/charts/ChromatogramChart/dataProcessing.js

@@ -1,79 +0,0 @@
-import { calculatePeakArea as h } from "./peakDetection.js";
-function c(t, o) {
-  if (t.length === 0 || t.length === 1) return 0;
-  let e = 0, n = t.length - 1;
-  for (; e < n; ) {
-    const l = Math.floor((e + n) / 2);
-    t[l] < o ? e = l + 1 : n = l;
-  }
-  return e > 0 && Math.abs(t[e - 1] - o) < Math.abs(t[e] - o) ? e - 1 : e;
-}
-function d(t, o, e) {
-  return t.map((n) => {
-    if (n.startX !== void 0 && n.endX !== void 0) {
-      const l = c(o, n.startX), i = c(o, n.endX), s = c(o, n.x), a = n._computed?.area ?? h(o, e, l, i);
-      return {
-        ...n,
-        _computed: {
-          ...n._computed,
-          index: s,
-          startIndex: l,
-          endIndex: i,
-          area: a
-        }
-      };
-    }
-    return n;
-  });
-}
-function f(t, o, e) {
-  const n = [];
-  t.forEach(({ peaks: i, seriesIndex: s }) => {
-    n.push({
-      peaks: i,
-      seriesIndex: s,
-      x: e[s].x,
-      y: e[s].y
-    });
-  });
-  const l = o.filter(
-    (i) => i._computed?.startIndex !== void 0 && i._computed?.endIndex !== void 0
-  );
-  return l.length > 0 && e.length > 0 && n.push({
-    peaks: l,
-    seriesIndex: 0,
-    // User annotations apply to first series by default
-    x: e[0].x,
-    y: e[0].y
-  }), n;
-}
-function m(t, o) {
-  const e = Math.min(t.length, o.length), n = t.slice(0, e), i = o.slice(0, e).map((a) => Number.isFinite(a) ? a : 0);
-  return { x: n.map((a) => Number.isFinite(a) ? a : 0), y: i };
-}
-function p(t, o, e = 50) {
-  if (o === "none" || t.length === 0) return t;
-  if (o === "linear") {
-    if (t.length === 1)
-      return [0];
-    const n = (t[t.length - 1] - t[0]) / (t.length - 1);
-    return t.map((l, i) => l - (t[0] + n * i));
-  }
-  if (o === "rolling") {
-    const n = [], l = Math.floor(e / 2);
-    for (let i = 0; i < t.length; i++) {
-      const s = Math.max(0, i - l), a = Math.min(t.length, i + l + 1), u = t.slice(s, a);
-      n.push(Math.min(...u));
-    }
-    return t.map((i, s) => i - n[s]);
-  }
-  return t;
-}
-export {
-  p as applyBaselineCorrection,
-  f as collectPeaksWithBoundaryData,
-  c as findClosestIndex,
-  d as processUserAnnotations,
-  m as validateSeriesData
-};
-//# sourceMappingURL=dataProcessing.js.map

package/dist/components/charts/ChromatogramChart/dataProcessing.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"dataProcessing.js","sources":["../../../../src/components/charts/ChromatogramChart/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for ChromatogramChart\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? calculatePeakArea(xArray, yArray, startIndex, endIndex);\n\n      return {\n        ...ann,\n        _computed: {\n          ...ann._computed,\n          index,\n          startIndex,\n          endIndex,\n          area,\n        },\n      };\n    }\n    return ann;\n  });\n}\n\n/**\n * Collect peaks with boundary information from both auto-detected peaks and user-provided annotations.\n * User-provided annotations with startIndex/endIndex or startX/endX are included for boundary marker rendering.\n */\nexport function collectPeaksWithBoundaryData(\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[],\n  annotations: PeakAnnotation[],\n  processedSeries: { x: number[]; y: number[] }[]\n): PeakDataWithSeries[] {\n  const peaksWithData: PeakDataWithSeries[] = [];\n\n  // Add auto-detected peaks\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    peaksWithData.push({\n      peaks,\n      seriesIndex,\n      x: processedSeries[seriesIndex].x,\n      y: processedSeries[seriesIndex].y,\n    });\n  });\n\n  // Add user-provided annotations that have boundary info (_computed.startIndex and _computed.endIndex)\n  // Note: annotations with startX/endX should already be processed to have _computed fields\n  const annotationsWithBoundaries = annotations.filter(\n    (ann) => ann._computed?.startIndex !== undefined && ann._computed?.endIndex !== undefined\n  );\n  if (annotationsWithBoundaries.length > 0 && processedSeries.length > 0) {\n    peaksWithData.push({\n      peaks: annotationsWithBoundaries,\n      seriesIndex: 0, // User annotations apply to first series by default\n      x: processedSeries[0].x,\n      y: processedSeries[0].y,\n    });\n  }\n\n  return peaksWithData;\n}\n\n/**\n * Build the extra content for Plotly hovertemplate from series metadata.\n * Displays all metadata fields as key: value pairs.\n */\nexport function buildHoverExtraContent(\n  seriesName: string,\n  metadata?: Record<string, unknown>\n): string {\n  if (!metadata) return seriesName;\n\n  const metaLines: string[] = [];\n  for (const [key, value] of Object.entries(metadata)) {\n    if (value !== undefined && value !== null && value !== \"\") {\n      // Format the key as Title Case (e.g., \"sampleName\" -> \"Sample Name\")\n      const formattedKey = key\n        .replace(/([A-Z])/g, \" $1\")\n        .replace(/^./, (s) => s.toUpperCase())\n        .trim();\n      metaLines.push(`${formattedKey}: ${String(value)}`);\n    }\n  }\n\n  if (metaLines.length > 0) {\n    return `${seriesName}<br>${metaLines.join(\"<br>\")}`;\n  }\n  return seriesName;\n}\n\n/**\n * Validate and sanitize series data.\n * - Ensures x and y arrays have the same length (truncates to shorter)\n * - Replaces NaN and Infinity values with 0\n */\nexport function validateSeriesData(\n  x: number[],\n  y: number[]\n): { x: number[]; y: number[] } {\n  // Ensure arrays have same length\n  const length = Math.min(x.length, y.length);\n  const validX = x.slice(0, length);\n  const validY = y.slice(0, length);\n\n  // Sanitize NaN and Infinity values\n  const sanitizedY = validY.map((val) => (Number.isFinite(val) ? 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package/dist/components/charts/ChromatogramChart/peakDetection.cjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"peakDetection.cjs","sources":["../../../../src/components/charts/ChromatogramChart/peakDetection.ts"],"sourcesContent":["/**\n * Peak detection algorithms for ChromatogramChart\n */\n\nimport type { PeakAnnotation, PeakDetectionOptions } from \"./types\";\n\n/**\n * Calculate prominence of a peak (how much it stands out from neighbors)\n */\nexport function calculateProminence(\n  y: number[],\n  peakIndex: number,\n  searchWindow: number\n): number {\n  let leftMin = y[peakIndex];\n  let rightMin = y[peakIndex];\n\n  for (let j = peakIndex - 1; j >= Math.max(0, peakIndex - searchWindow); j--) {\n    leftMin = Math.min(leftMin, y[j]);\n  }\n  for (\n    let j = peakIndex + 1;\n    j < Math.min(y.length, peakIndex + searchWindow);\n    j++\n  ) {\n    rightMin = Math.min(rightMin, y[j]);\n  }\n\n  return y[peakIndex] - Math.max(leftMin, rightMin);\n}\n\n/**\n * Find peak boundary indices by walking outward from peak\n */\nexport function findPeakBoundaries(\n  y: number[],\n  peakIndex: number\n): { startIndex: number; endIndex: number } {\n  let startIndex = peakIndex;\n  let endIndex = peakIndex;\n\n  // Walk left to find start\n  for (let j = peakIndex - 1; j >= 0; j--) {\n    if (y[j] <= y[j + 1]) {\n      startIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  // Walk right to find end\n  for (let j = peakIndex + 1; j < y.length; j++) {\n    if (y[j] <= y[j - 1]) {\n      endIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  return { startIndex, endIndex };\n}\n\n/**\n * Calculate peak area using trapezoidal integration\n */\nexport function calculatePeakArea(\n  x: number[],\n  y: number[],\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  let area = 0;\n\n  for (let j = startIndex; j < endIndex; j++) {\n    const h = x[j + 1] - x[j];\n    const y1 = y[j] - baselineY;\n    const y2 = y[j + 1] - baselineY;\n    area += ((y1 + y2) * h) / 2;\n  }\n\n  return area;\n}\n\n/**\n * Calculate width at half maximum of a peak\n */\nexport function calculateWidthAtHalfMax(\n  x: number[],\n  y: number[],\n  peakIndex: number,\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  const halfMax = (y[peakIndex] + baselineY) / 2;\n  let leftHalf = peakIndex;\n  let rightHalf = peakIndex;\n\n  for (let j = peakIndex; j >= startIndex; j--) {\n    if (y[j] < halfMax) {\n      leftHalf = j;\n      break;\n    }\n  }\n  for (let j = peakIndex; j <= endIndex; j++) {\n    if (y[j] < halfMax) {\n      rightHalf = j;\n      break;\n    }\n  }\n\n  return x[rightHalf] - x[leftHalf];\n}\n\n/**\n * Filter peaks by minimum distance, keeping more intense peaks\n */\nexport function filterPeaksByDistance(\n  peaks: PeakAnnotation[],\n  minDistance: number\n): PeakAnnotation[] {\n  const filtered: PeakAnnotation[] = [];\n\n  for (const peak of peaks) {\n    const tooClose = filtered.some(\n      (p) => Math.abs((p._computed?.index ?? 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package/dist/components/charts/ChromatogramChart/peakDetection.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"peakDetection.js","sources":["../../../../src/components/charts/ChromatogramChart/peakDetection.ts"],"sourcesContent":["/**\n * Peak detection algorithms for ChromatogramChart\n */\n\nimport type { PeakAnnotation, PeakDetectionOptions } from \"./types\";\n\n/**\n * Calculate prominence of a peak (how much it stands out from neighbors)\n */\nexport function calculateProminence(\n  y: number[],\n  peakIndex: number,\n  searchWindow: number\n): number {\n  let leftMin = y[peakIndex];\n  let rightMin = y[peakIndex];\n\n  for (let j = peakIndex - 1; j >= Math.max(0, peakIndex - searchWindow); j--) {\n    leftMin = Math.min(leftMin, y[j]);\n  }\n  for (\n    let j = peakIndex + 1;\n    j < Math.min(y.length, peakIndex + searchWindow);\n    j++\n  ) {\n    rightMin = Math.min(rightMin, y[j]);\n  }\n\n  return y[peakIndex] - Math.max(leftMin, rightMin);\n}\n\n/**\n * Find peak boundary indices by walking outward from peak\n */\nexport function findPeakBoundaries(\n  y: number[],\n  peakIndex: number\n): { startIndex: number; endIndex: number } {\n  let startIndex = peakIndex;\n  let endIndex = peakIndex;\n\n  // Walk left to find start\n  for (let j = peakIndex - 1; j >= 0; j--) {\n    if (y[j] <= y[j + 1]) {\n      startIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  // Walk right to find end\n  for (let j = peakIndex + 1; j < y.length; j++) {\n    if (y[j] <= y[j - 1]) {\n      endIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  return { startIndex, endIndex };\n}\n\n/**\n * Calculate peak area using trapezoidal integration\n */\nexport function calculatePeakArea(\n  x: number[],\n  y: number[],\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  let area = 0;\n\n  for (let j = startIndex; j < endIndex; j++) {\n    const h = x[j + 1] - x[j];\n    const y1 = y[j] - baselineY;\n    const y2 = y[j + 1] - baselineY;\n    area += ((y1 + y2) * h) / 2;\n  }\n\n  return area;\n}\n\n/**\n * Calculate width at half maximum of a peak\n */\nexport function calculateWidthAtHalfMax(\n  x: number[],\n  y: number[],\n  peakIndex: number,\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  const halfMax = (y[peakIndex] + baselineY) / 2;\n  let leftHalf = peakIndex;\n  let rightHalf = peakIndex;\n\n  for (let j = peakIndex; j >= startIndex; j--) {\n    if (y[j] < halfMax) {\n      leftHalf = j;\n      break;\n    }\n  }\n  for (let j = peakIndex; j <= endIndex; j++) {\n    if (y[j] < halfMax) {\n      rightHalf = j;\n      break;\n    }\n  }\n\n  return x[rightHalf] - x[leftHalf];\n}\n\n/**\n * Filter peaks by minimum distance, keeping more intense peaks\n */\nexport function filterPeaksByDistance(\n  peaks: PeakAnnotation[],\n  minDistance: number\n): PeakAnnotation[] {\n  const filtered: PeakAnnotation[] = [];\n\n  for (const peak of peaks) {\n    const tooClose = filtered.some(\n      (p) => Math.abs((p._computed?.index ?? 0) - (peak._computed?.index ?? 0)) < minDistance\n    );\n    if (!tooClose) {\n      filtered.push(peak);\n    } else if (\n      filtered.length > 0 &&\n      peak.y > filtered[filtered.length - 1].y\n    ) {\n      filtered.pop();\n      filtered.push(peak);\n    }\n  }\n\n  return filtered.sort((a, b) => a.x - b.x);\n}\n\n/**\n * Detect peaks in signal data using derivative analysis.\n *\n * Default parameters are tuned for typical HPLC chromatograms:\n * - minHeight (0.05 = 5%): Filters noise while detecting small peaks\n * - minDistance (5 points): Prevents detecting noise as multiple peaks\n * - prominence (0.02 = 2%): Ensures peaks stand out from baseline/shoulders\n */\nexport function detectPeaks(\n  x: number[],\n  y: number[],\n  options: PeakDetectionOptions = {}\n): PeakAnnotation[] {\n  const {\n    minHeight = 0.05,\n    minDistance = 5,\n    prominence = 0.02,\n    relativeThreshold = true,\n  } = options;\n\n  if (y.length < 3) return [];\n\n  const maxY = Math.max(...y);\n  const threshold = relativeThreshold ? minHeight * maxY : minHeight;\n  const prominenceThreshold = relativeThreshold ? prominence * maxY : prominence;\n  const searchWindow = minDistance * 3;\n\n  const peaks: PeakAnnotation[] = [];\n\n  // Find local maxima\n  for (let i = 1; i < y.length - 1; i++) {\n    const isLocalMax =\n      y[i] > y[i - 1] && y[i] > y[i + 1] && y[i] >= threshold;\n    if (!isLocalMax) continue;\n\n    const peakProminence = calculateProminence(y, i, searchWindow);\n    if (peakProminence < prominenceThreshold) continue;\n\n    const { startIndex, endIndex } = findPeakBoundaries(y, i);\n    const area = calculatePeakArea(x, y, startIndex, endIndex);\n    const widthAtHalfMax = calculateWidthAtHalfMax(\n      x,\n      y,\n      i,\n      startIndex,\n      endIndex\n    );\n\n    peaks.push({\n      x: x[i],\n      y: y[i],\n      _computed: {\n        area,\n        index: i,\n        startIndex,\n        endIndex,\n        widthAtHalfMax,\n      },\n    });\n  }\n\n  return filterPeaksByDistance(peaks, minDistance);\n}\n\n"],"names":["calculateProminence","y","peakIndex","searchWindow","leftMin","rightMin","j","findPeakBoundaries","startIndex","endIndex","calculatePeakArea","x","baselineY","area","h","y1","y2","calculateWidthAtHalfMax","halfMax","leftHalf","rightHalf","filterPeaksByDistance","peaks","minDistance","filtered","peak","p","a","b","detectPeaks","options","minHeight","prominence","relativeThreshold","maxY","threshold","prominenceThreshold","i","widthAtHalfMax"],"mappings":"AASO,SAASA,EACdC,GACAC,GACAC,GACQ;AACR,MAAIC,IAAUH,EAAEC,CAAS,GACrBG,IAAWJ,EAAEC,CAAS;AAE1B,WAASI,IAAIJ,IAAY,GAAGI,KAAK,KAAK,IAAI,GAAGJ,IAAYC,CAAY,GAAGG;AACtE,IAAAF,IAAU,KAAK,IAAIA,GAASH,EAAEK,CAAC,CAAC;AAElC,WACMA,IAAIJ,IAAY,GACpBI,IAAI,KAAK,IAAIL,EAAE,QAAQC,IAAYC,CAAY,GAC/CG;AAEA,IAAAD,IAAW,KAAK,IAAIA,GAAUJ,EAAEK,CAAC,CAAC;AAGpC,SAAOL,EAAEC,CAAS,IAAI,KAAK,IAAIE,GAASC,CAAQ;AAClD;AAKO,SAASE,EACdN,GACAC,GAC0C;AAC1C,MAAIM,IAAaN,GACbO,IAAWP;AAGf,WAASI,IAAIJ,IAAY,GAAGI,KAAK,KAC3BL,EAAEK,CAAC,KAAKL,EAAEK,IAAI,CAAC,GADeA;AAEhC,IAAAE,IAAaF;AAOjB,WAASA,IAAIJ,IAAY,GAAGI,IAAIL,EAAE,UAC5BA,EAAEK,CAAC,KAAKL,EAAEK,IAAI,CAAC,GADqBA;AAEtC,IAAAG,IAAWH;AAMf,SAAO,EAAE,YAAAE,GAAY,UAAAC,EAAA;AACvB;AAKO,SAASC,EACdC,GACAV,GACAO,GACAC,GACQ;AACR,QAAMG,IAAY,KAAK,IAAIX,EAAEO,CAAU,GAAGP,EAAEQ,CAAQ,CAAC;AACrD,MAAII,IAAO;AAEX,WAASP,IAAIE,GAAYF,IAAIG,GAAUH,KAAK;AAC1C,UAAMQ,IAAIH,EAAEL,IAAI,CAAC,IAAIK,EAAEL,CAAC,GAClBS,IAAKd,EAAEK,CAAC,IAAIM,GACZI,IAAKf,EAAEK,IAAI,CAAC,IAAIM;AACtB,IAAAC,MAAUE,IAAKC,KAAMF,IAAK;AAAA,EAC5B;AAEA,SAAOD;AACT;AAKO,SAASI,EACdN,GACAV,GACAC,GACAM,GACAC,GACQ;AACR,QAAMG,IAAY,KAAK,IAAIX,EAAEO,CAAU,GAAGP,EAAEQ,CAAQ,CAAC,GAC/CS,KAAWjB,EAAEC,CAAS,IAAIU,KAAa;AAC7C,MAAIO,IAAWjB,GACXkB,IAAYlB;AAEhB,WAASI,IAAIJ,GAAWI,KAAKE,GAAYF;AACvC,QAAIL,EAAEK,CAAC,IAAIY,GAAS;AAClB,MAAAC,IAAWb;AACX;AAAA,IACF;AAEF,WAASA,IAAIJ,GAAWI,KAAKG,GAAUH;AACrC,QAAIL,EAAEK,CAAC,IAAIY,GAAS;AAClB,MAAAE,IAAYd;AACZ;AAAA,IACF;AAGF,SAAOK,EAAES,CAAS,IAAIT,EAAEQ,CAAQ;AAClC;AAKO,SAASE,EACdC,GACAC,GACkB;AAClB,QAAMC,IAA6B,CAAA;AAEnC,aAAWC,KAAQH;AAIjB,IAHiBE,EAAS;AAAA,MACxB,CAACE,MAAM,KAAK,KAAKA,EAAE,WAAW,SAAS,MAAMD,EAAK,WAAW,SAAS,EAAE,IAAIF;AAAA,IAAA,IAK5EC,EAAS,SAAS,KAClBC,EAAK,IAAID,EAASA,EAAS,SAAS,CAAC,EAAE,MAEvCA,EAAS,IAAA,GACTA,EAAS,KAAKC,CAAI,KANlBD,EAAS,KAAKC,CAAI;AAUtB,SAAOD,EAAS,KAAK,CAACG,GAAGC,MAAMD,EAAE,IAAIC,EAAE,CAAC;AAC1C;AAUO,SAASC,EACdlB,GACAV,GACA6B,IAAgC,CAAA,GACd;AAClB,QAAM;AAAA,IACJ,WAAAC,IAAY;AAAA,IACZ,aAAAR,IAAc;AAAA,IACd,YAAAS,IAAa;AAAA,IACb,mBAAAC,IAAoB;AAAA,EAAA,IAClBH;AAEJ,MAAI7B,EAAE,SAAS,EAAG,QAAO,CAAA;AAEzB,QAAMiC,IAAO,KAAK,IAAI,GAAGjC,CAAC,GACpBkC,IAAYF,IAAoBF,IAAYG,IAAOH,GACnDK,IAAsBH,IAAoBD,IAAaE,IAAOF,GAC9D7B,IAAeoB,IAAc,GAE7BD,IAA0B,CAAA;AAGhC,WAASe,IAAI,GAAGA,IAAIpC,EAAE,SAAS,GAAGoC,KAAK;AAMrC,QAHI,EADFpC,EAAEoC,CAAC,IAAIpC,EAAEoC,IAAI,CAAC,KAAKpC,EAAEoC,CAAC,IAAIpC,EAAEoC,IAAI,CAAC,KAAKpC,EAAEoC,CAAC,KAAKF,MAGzBnC,EAAoBC,GAAGoC,GAAGlC,CAAY,IACxCiC,EAAqB;AAE1C,UAAM,EAAE,YAAA5B,GAAY,UAAAC,EAAA,IAAaF,EAAmBN,GAAGoC,CAAC,GAClDxB,IAAOH,EAAkBC,GAAGV,GAAGO,GAAYC,CAAQ,GACnD6B,IAAiBrB;AAAA,MACrBN;AAAA,MACAV;AAAA,MACAoC;AAAA,MACA7B;AAAA,MACAC;AAAA,IAAA;AAGF,IAAAa,EAAM,KAAK;AAAA,MACT,GAAGX,EAAE0B,CAAC;AAAA,MACN,GAAGpC,EAAEoC,CAAC;AAAA,MACN,WAAW;AAAA,QACT,MAAAxB;AAAA,QACA,OAAOwB;AAAA,QACP,YAAA7B;AAAA,QACA,UAAAC;AAAA,QACA,gBAAA6B;AAAA,MAAA;AAAA,IACF,CACD;AAAA,EACH;AAEA,SAAOjB,EAAsBC,GAAOC,CAAW;AACjD;"}