@tetrascience-npm/tetrascience-react-ui 0.7.0-beta.107.1 → 0.7.0-beta.128.1

package/dist/components/charts/Chromatogram/annotations.js

@@ -0,0 +1,137 @@
+import { CHART_COLORS as T } from "../../../utils/colors.js";
+import { CHROMATOGRAM_ANNOTATION as s } from "./constants.js";
+import { CHART_FONT_FAMILY as C } from "../../../hooks/use-plotly-theme.js";
+const A = {
+  selected: {
+    borderColor: "#3b82f6",
+    backgroundColor: "#dbeafe",
+    bold: !0
+  },
+  unselected: { opacity: 0.4 },
+  hoverLineWidthMultiplier: 5 / 3
+};
+function w(o) {
+  if (!o) return A;
+  const e = A;
+  return {
+    selected: {
+      borderColor: o.selected?.borderColor ?? e.selected.borderColor,
+      backgroundColor: o.selected?.backgroundColor ?? e.selected.backgroundColor,
+      bold: o.selected?.bold ?? e.selected.bold
+    },
+    unselected: {
+      opacity: o.unselected?.opacity ?? e.unselected.opacity
+    },
+    hoverLineWidthMultiplier: o.hoverLineWidthMultiplier ?? e.hoverLineWidthMultiplier
+  };
+}
+const y = {
+  default: { ax: 0, ay: -35 },
+  overlap: [
+    { ax: 50, ay: -35 },
+    // Right, level 1
+    { ax: -60, ay: -35 },
+    // Left, level 1
+    { ax: 70, ay: -55 },
+    // Right, level 2
+    { ax: -80, ay: -55 },
+    // Left, level 2
+    { ax: 50, ay: -75 },
+    // Right, level 3
+    { ax: -60, ay: -75 }
+    // Left, level 3
+  ]
+};
+function E(o, e) {
+  const c = [...o].sort((n, l) => n.peak.x - l.peak.x), r = [];
+  let t = [];
+  for (const n of c) {
+    if (t.length === 0) {
+      t.push(n);
+      continue;
+    }
+    const l = t[t.length - 1];
+    Math.abs(n.peak.x - l.peak.x) < e ? t.push(n) : (r.push(t), t = [n]);
+  }
+  return t.length > 0 && r.push(t), r;
+}
+function S(o, e, c, r, t, n) {
+  const l = o ? t.selected.backgroundColor : s.BACKGROUND_COLOR;
+  let i;
+  o ? i = t.selected.borderColor : i = c && !n ? void 0 : r;
+  const d = o ? 2 : c && !n ? 0 : 1, a = e ? t.unselected.opacity : void 0;
+  return { bgcolor: l, bordercolor: i, borderwidth: d, ...a === void 0 ? {} : { opacity: a } };
+}
+function R(o, e, c, r, t, n, l) {
+  const i = n ? l.unselected.opacity : void 0;
+  return {
+    x: o.x,
+    y: o.y,
+    text: e,
+    showarrow: !1,
+    yshift: s.INLINE_YSHIFT,
+    yanchor: "bottom",
+    xanchor: "center",
+    font: {
+      size: c,
+      color: t ? l.selected.borderColor : r,
+      family: C
+    },
+    ...i === void 0 ? {} : { opacity: i }
+  };
+}
+function _(o, e, c, r = {}) {
+  const {
+    selectedPeakIds: t = [],
+    anySelected: n = !1,
+    appearance: l = A,
+    annotationStyle: i = "arrow"
+  } = r, d = e === -1, a = d ? s.USER_ANNOTATION_COLOR : T[e % T.length], f = o.color ?? a, O = d && !o.color ? s.USER_ANNOTATION_TEXT_COLOR : f, b = o.text ?? (o._computed?.area === void 0 ? "" : `Area: ${o._computed.area.toFixed(2)}`), u = o.id !== void 0 && t.includes(o.id), h = !u && n, x = u && l.selected.bold ? `<b>${b}</b>` : b, N = d ? s.USER_ANNOTATION_FONT_SIZE : s.AUTO_ANNOTATION_FONT_SIZE;
+  if (i === "inline")
+    return R(o, x, N, O, u, h, l);
+  const v = d && o.ax !== void 0 ? o.ax : c.ax, m = d && o.ay !== void 0 ? o.ay : c.ay, I = S(
+    u,
+    h,
+    d,
+    f,
+    l,
+    o.color !== void 0
+  );
+  return {
+    x: o.x,
+    y: o.y,
+    text: x,
+    showarrow: !0,
+    arrowhead: 2,
+    arrowsize: 1,
+    arrowwidth: 1,
+    arrowcolor: f,
+    ax: v,
+    ay: m,
+    font: {
+      size: N,
+      color: O,
+      family: C
+    },
+    borderpad: 2,
+    ...I
+  };
+}
+function M(o, e = {}) {
+  if (o.length === 1) {
+    const { peak: r, seriesIndex: t } = o[0];
+    return [_(r, t, y.default, e)];
+  }
+  return [...o].sort((r, t) => r.peak.y - t.peak.y).map(({ peak: r, seriesIndex: t }, n) => {
+    const l = y.overlap[n % y.overlap.length];
+    return _(r, t, l, e);
+  });
+}
+export {
+  y as ANNOTATION_SLOTS,
+  M as createGroupAnnotations,
+  _ as createPeakAnnotation,
+  E as groupOverlappingPeaks,
+  w as resolveSelectionAppearance
+};
+//# sourceMappingURL=annotations.js.map

package/dist/components/charts/Chromatogram/annotations.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"annotations.js","sources":["../../../../src/components/charts/Chromatogram/annotations.ts"],"sourcesContent":["/**\n * Annotation utilities for Chromatogram\n */\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\nimport { CHROMATOGRAM_ANNOTATION } from \"./constants\";\n\nimport type { PeakAnnotation, PeakSelectionAppearance, PeakWithMeta } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\nimport { CHART_FONT_FAMILY } from \"@/hooks/use-plotly-theme\";\n\n// ── Selection appearance helpers ─────────────────────────────────────────────\n\nexport interface ResolvedSelectionAppearance {\n  selected: {\n    borderColor: string;\n    backgroundColor: string;\n    bold: boolean;\n  };\n  unselected: {\n    opacity: number;\n  };\n  hoverLineWidthMultiplier: number;\n}\n\nconst DEFAULT_RESOLVED_APPEARANCE: ResolvedSelectionAppearance = {\n  selected: {\n    borderColor: \"#3b82f6\",\n    backgroundColor: \"#dbeafe\",\n    bold: true,\n  },\n  unselected: { opacity: 0.4 },\n  hoverLineWidthMultiplier: 5 / 3,\n};\n\nexport function resolveSelectionAppearance(\n  appearance?: PeakSelectionAppearance\n): ResolvedSelectionAppearance {\n  if (!appearance) return DEFAULT_RESOLVED_APPEARANCE;\n  const d = DEFAULT_RESOLVED_APPEARANCE;\n  return {\n    selected: {\n      borderColor: appearance.selected?.borderColor ?? d.selected.borderColor,\n      backgroundColor: appearance.selected?.backgroundColor ?? d.selected.backgroundColor,\n      bold: appearance.selected?.bold ?? d.selected.bold,\n    },\n    unselected: {\n      opacity: appearance.unselected?.opacity ?? d.unselected.opacity,\n    },\n    hoverLineWidthMultiplier:\n      appearance.hoverLineWidthMultiplier ?? d.hoverLineWidthMultiplier,\n  };\n}\n\n/**\n * Annotation slot positions for peak labels\n */\nexport const ANNOTATION_SLOTS = {\n  default: { ax: 0, ay: -35 },\n  overlap: [\n    { ax: 50, ay: -35 }, // Right, level 1\n    { ax: -60, ay: -35 }, // Left, level 1\n    { ax: 70, ay: -55 }, // Right, level 2\n    { ax: -80, ay: -55 }, // Left, level 2\n    { ax: 50, ay: -75 }, // Right, level 3\n    { ax: -60, ay: -75 }, // Left, level 3\n  ],\n};\n\n/**\n * Group overlapping peaks by retention time (x) proximity\n */\nexport function groupOverlappingPeaks(\n  peaksWithMeta: PeakWithMeta[],\n  overlapThreshold: number\n): PeakWithMeta[][] {\n  const sorted = [...peaksWithMeta].sort((a, b) => a.peak.x - b.peak.x);\n\n  const groups: PeakWithMeta[][] = [];\n  let currentGroup: PeakWithMeta[] = [];\n\n  for (const current of sorted) {\n    if (currentGroup.length === 0) {\n      currentGroup.push(current);\n      continue;\n    }\n\n    const lastInGroup = currentGroup[currentGroup.length - 1];\n    const timeDiff = Math.abs(current.peak.x - lastInGroup.peak.x);\n\n    if (timeDiff < overlapThreshold) {\n      currentGroup.push(current);\n    } else {\n      groups.push(currentGroup);\n      currentGroup = [current];\n    }\n  }\n\n  if (currentGroup.length > 0) {\n    groups.push(currentGroup);\n  }\n\n  return groups;\n}\n\ninterface PeakAnnotationOptions {\n  selectedPeakIds?: string[];\n  anySelected?: boolean;\n  appearance?: ResolvedSelectionAppearance;\n  annotationStyle?: \"arrow\" | \"inline\";\n}\n\ninterface AnnotationBorderStyle {\n  bgcolor: string;\n  bordercolor: string | undefined;\n  borderwidth: number;\n  opacity?: number;\n}\n\n/** Derives border/background/opacity from selection state — extracted to keep\n *  createPeakAnnotation within the allowed cognitive complexity budget. */\nfunction resolveAnnotationBorderStyle(\n  isSelected: boolean,\n  isDimmed: boolean,\n  isUserDefined: boolean,\n  seriesColor: string,\n  appearance: ResolvedSelectionAppearance,\n  hasColorOverride: boolean\n): AnnotationBorderStyle {\n  const bgcolor = isSelected\n    ? appearance.selected.backgroundColor\n    : CHROMATOGRAM_ANNOTATION.BACKGROUND_COLOR;\n  let bordercolor: string | undefined;\n  if (isSelected) {\n    bordercolor = appearance.selected.borderColor;\n  } else {\n    bordercolor = isUserDefined && !hasColorOverride ? undefined : seriesColor;\n  }\n  const borderwidth = isSelected ? 2 : isUserDefined && !hasColorOverride ? 0 : 1;\n  const opacity = isDimmed ? appearance.unselected.opacity : undefined;\n  return { bgcolor, bordercolor, borderwidth, ...(opacity === undefined ? {} : { opacity }) };\n}\n\n/** Builds an inline-style (no-arrow) annotation that floats above the trace point. */\nfunction createInlineAnnotation(\n  peak: PeakAnnotation,\n  text: string,\n  fontSize: number,\n  textColor: string,\n  isSelected: boolean,\n  isDimmed: boolean,\n  appearance: ResolvedSelectionAppearance\n): Partial<Plotly.Annotations> {\n  const opacity = isDimmed ? appearance.unselected.opacity : undefined;\n  return {\n    x: peak.x,\n    y: peak.y,\n    text,\n    showarrow: false,\n    yshift: CHROMATOGRAM_ANNOTATION.INLINE_YSHIFT,\n    yanchor: \"bottom\" as const,\n    xanchor: \"center\" as const,\n    font: {\n      size: fontSize,\n      color: isSelected ? appearance.selected.borderColor : textColor,\n      family: CHART_FONT_FAMILY,\n    },\n    ...(opacity === undefined ? {} : { opacity }),\n  };\n}\n\n/**\n * Create a Plotly annotation for a peak.\n * seriesIndex of -1 indicates a user-defined annotation (uses grey/black styling).\n */\nexport function createPeakAnnotation(\n  peak: PeakAnnotation,\n  seriesIndex: number,\n  slot: { ax: number; ay: number },\n  options: PeakAnnotationOptions = {}\n): Partial<Plotly.Annotations> {\n  const {\n    selectedPeakIds = [],\n    anySelected = false,\n    appearance = DEFAULT_RESOLVED_APPEARANCE,\n    annotationStyle = \"arrow\",\n  } = options;\n\n  const isUserDefined = seriesIndex === -1;\n  const defaultColor = isUserDefined\n    ? CHROMATOGRAM_ANNOTATION.USER_ANNOTATION_COLOR\n    : CHART_COLORS[seriesIndex % CHART_COLORS.length];\n  const color = peak.color ?? defaultColor;\n  const textColor = isUserDefined && !peak.color\n    ? CHROMATOGRAM_ANNOTATION.USER_ANNOTATION_TEXT_COLOR\n    : color;\n\n  const rawText = peak.text ?? (peak._computed?.area === undefined ? \"\" : `Area: ${peak._computed.area.toFixed(2)}`);\n\n  const isSelected = peak.id !== undefined && selectedPeakIds.includes(peak.id);\n  const isDimmed = !isSelected && anySelected;\n\n  const text = isSelected && appearance.selected.bold ? `<b>${rawText}</b>` : rawText;\n\n  const fontSize = isUserDefined\n    ? 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package/dist/components/charts/Chromatogram/boundaryMarkers.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const c=require("../../../utils/colors.cjs"),m=-5,A=-12,d=-16;function i(n,e,o,r){return o==="none"?[]:[{x:[n],y:[e],type:"scatter",mode:"markers",marker:{symbol:o==="diamond"?"diamond":"triangle-up",size:8,color:r},showlegend:!1,hoverinfo:"skip"}]}function O(n){const e=[];for(const{peaks:o,seriesIndex:r,x:s}of n){const u=c.CHART_COLORS[r%c.CHART_COLORS.length],R=m+r*d,k=A+r*d;for(const t of o){const l=t._computed?.startIndex??0,M=t._computed?.endIndex??0,_=s[l],p=s[M],f=t.startMarker??"triangle",T=t.endMarker??"diamond",a=t.color??u;e.push(...i(_,R,f,a)),e.push(...i(p,k,T,a))}}return e}exports.createBoundaryMarkerTraces=O;
+//# sourceMappingURL=boundaryMarkers.cjs.map

package/dist/components/charts/Chromatogram/boundaryMarkers.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"boundaryMarkers.cjs","sources":["../../../../src/components/charts/Chromatogram/boundaryMarkers.ts"],"sourcesContent":["/**\n * Boundary marker utilities for Chromatogram\n */\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\nimport type { PeakAnnotation, BoundaryMarkerType } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/** Base Y position for start boundary markers (below the x-axis) */\nconst BOUNDARY_MARKER_START_Y = -5;\n/** Y position for end boundary markers (below start markers) */\nconst BOUNDARY_MARKER_END_Y = -12;\n/** Y offset between series to prevent overlap */\nconst BOUNDARY_MARKER_SERIES_OFFSET = -16;\n\n/**\n * Create a marker trace for a boundary point.\n * Markers are placed on the x-axis below 0, staggered by series index.\n */\nfunction createMarkerTrace(\n  xPos: number,\n  yPos: number,\n  markerType: BoundaryMarkerType,\n  color: string\n): Plotly.Data[] {\n  if (markerType === \"none\") {\n    return [];\n  }\n\n  return [\n    {\n      x: [xPos],\n      y: [yPos],\n      type: \"scatter\" as const,\n      mode: \"markers\" as const,\n      marker: {\n        symbol: markerType === \"diamond\" ? (\"diamond\" as const) : (\"triangle-up\" as const),\n        size: 8,\n        color,\n      },\n      showlegend: false,\n      hoverinfo: \"skip\" as const,\n    },\n  ];\n}\n\n/**\n * Create boundary marker traces for peaks.\n * Uses per-peak startMarker/endMarker settings with defaults:\n * - startMarker: \"triangle\" (default)\n * - endMarker: \"diamond\" (default)\n */\nexport function createBoundaryMarkerTraces(\n  allPeaks: {\n    peaks: PeakAnnotation[];\n    seriesIndex: number;\n    x: number[];\n    y: number[];\n  }[]\n): Plotly.Data[] {\n  const traces: Plotly.Data[] = [];\n\n  for (const { peaks, seriesIndex, x } of allPeaks) {\n    const seriesColor = CHART_COLORS[seriesIndex % CHART_COLORS.length];\n    // Separate y positions for start vs end markers to prevent overlap when peaks are adjacent\n    // Also stagger by series index to prevent overlap between different traces\n    const startMarkerY = BOUNDARY_MARKER_START_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n    const endMarkerY = BOUNDARY_MARKER_END_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n\n    for (const peak of peaks) {\n      const startIdx = peak._computed?.startIndex ?? 0;\n      const endIdx = peak._computed?.endIndex ?? 0;\n      const startX = x[startIdx];\n      const endX = x[endIdx];\n\n      // Get marker types with defaults: triangle at start, diamond at end\n      const startMarkerType = peak.startMarker ?? \"triangle\";\n      const endMarkerType = peak.endMarker ?? \"diamond\";\n\n      const color = peak.color ?? seriesColor;\n\n      // Create start boundary marker (upper row, staggered by series)\n      traces.push(...createMarkerTrace(startX, startMarkerY, startMarkerType, color));\n\n      // Create end boundary marker (lower row, staggered by series)\n      traces.push(...createMarkerTrace(endX, endMarkerY, endMarkerType, color));\n    }\n  }\n\n  return traces;\n}\n\n"],"names":["BOUNDARY_MARKER_START_Y","BOUNDARY_MARKER_END_Y","BOUNDARY_MARKER_SERIES_OFFSET","createMarkerTrace","xPos","yPos","markerType","color","createBoundaryMarkerTraces","allPeaks","traces","peaks","seriesIndex","x","seriesColor","CHART_COLORS","startMarkerY","endMarkerY","peak","startIdx","endIdx","startX","endX","startMarkerType","endMarkerType"],"mappings":"6HAUMA,EAA0B,GAE1BC,EAAwB,IAExBC,EAAgC,IAMtC,SAASC,EACPC,EACAC,EACAC,EACAC,EACe,CACf,OAAID,IAAe,OACV,CAAA,EAGF,CACL,CACE,EAAG,CAACF,CAAI,EACR,EAAG,CAACC,CAAI,EACR,KAAM,UACN,KAAM,UACN,OAAQ,CACN,OAAQC,IAAe,UAAa,UAAuB,cAC3D,KAAM,EACN,MAAAC,CAAA,EAEF,WAAY,GACZ,UAAW,MAAA,CACb,CAEJ,CAQO,SAASC,EACdC,EAMe,CACf,MAAMC,EAAwB,CAAA,EAE9B,SAAW,CAAE,MAAAC,EAAO,YAAAC,EAAa,EAAAC,CAAA,IAAOJ,EAAU,CAChD,MAAMK,EAAcC,EAAAA,aAAaH,EAAcG,EAAAA,aAAa,MAAM,EAG5DC,EAAehB,EAA0BY,EAAcV,EACvDe,EAAahB,EAAwBW,EAAcV,EAEzD,UAAWgB,KAAQP,EAAO,CACxB,MAAMQ,EAAWD,EAAK,WAAW,YAAc,EACzCE,EAASF,EAAK,WAAW,UAAY,EACrCG,EAASR,EAAEM,CAAQ,EACnBG,EAAOT,EAAEO,CAAM,EAGfG,EAAkBL,EAAK,aAAe,WACtCM,EAAgBN,EAAK,WAAa,UAElCX,EAAQW,EAAK,OAASJ,EAG5BJ,EAAO,KAAK,GAAGP,EAAkBkB,EAAQL,EAAcO,EAAiBhB,CAAK,CAAC,EAG9EG,EAAO,KAAK,GAAGP,EAAkBmB,EAAML,EAAYO,EAAejB,CAAK,CAAC,CAC1E,CACF,CAEA,OAAOG,CACT"}

package/dist/components/charts/Chromatogram/boundaryMarkers.js

@@ -0,0 +1,34 @@
+import { CHART_COLORS as c } from "../../../utils/colors.js";
+const x = -5, A = -12, d = -16;
+function i(o, e, n, r) {
+  return n === "none" ? [] : [
+    {
+      x: [o],
+      y: [e],
+      type: "scatter",
+      mode: "markers",
+      marker: {
+        symbol: n === "diamond" ? "diamond" : "triangle-up",
+        size: 8,
+        color: r
+      },
+      showlegend: !1,
+      hoverinfo: "skip"
+    }
+  ];
+}
+function T(o) {
+  const e = [];
+  for (const { peaks: n, seriesIndex: r, x: s } of o) {
+    const R = c[r % c.length], k = x + r * d, p = A + r * d;
+    for (const t of n) {
+      const _ = t._computed?.startIndex ?? 0, u = t._computed?.endIndex ?? 0, M = s[_], f = s[u], m = t.startMarker ?? "triangle", l = t.endMarker ?? "diamond", a = t.color ?? R;
+      e.push(...i(M, k, m, a)), e.push(...i(f, p, l, a));
+    }
+  }
+  return e;
+}
+export {
+  T as createBoundaryMarkerTraces
+};
+//# sourceMappingURL=boundaryMarkers.js.map

package/dist/components/charts/Chromatogram/boundaryMarkers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"boundaryMarkers.js","sources":["../../../../src/components/charts/Chromatogram/boundaryMarkers.ts"],"sourcesContent":["/**\n * Boundary marker utilities for Chromatogram\n */\n\nimport { CHART_COLORS } from \"../../../utils/colors\";\n\nimport type { PeakAnnotation, BoundaryMarkerType } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\n/** Base Y position for start boundary markers (below the x-axis) */\nconst BOUNDARY_MARKER_START_Y = -5;\n/** Y position for end boundary markers (below start markers) */\nconst BOUNDARY_MARKER_END_Y = -12;\n/** Y offset between series to prevent overlap */\nconst BOUNDARY_MARKER_SERIES_OFFSET = -16;\n\n/**\n * Create a marker trace for a boundary point.\n * Markers are placed on the x-axis below 0, staggered by series index.\n */\nfunction createMarkerTrace(\n  xPos: number,\n  yPos: number,\n  markerType: BoundaryMarkerType,\n  color: string\n): Plotly.Data[] {\n  if (markerType === \"none\") {\n    return [];\n  }\n\n  return [\n    {\n      x: [xPos],\n      y: [yPos],\n      type: \"scatter\" as const,\n      mode: \"markers\" as const,\n      marker: {\n        symbol: markerType === \"diamond\" ? (\"diamond\" as const) : (\"triangle-up\" as const),\n        size: 8,\n        color,\n      },\n      showlegend: false,\n      hoverinfo: \"skip\" as const,\n    },\n  ];\n}\n\n/**\n * Create boundary marker traces for peaks.\n * Uses per-peak startMarker/endMarker settings with defaults:\n * - startMarker: \"triangle\" (default)\n * - endMarker: \"diamond\" (default)\n */\nexport function createBoundaryMarkerTraces(\n  allPeaks: {\n    peaks: PeakAnnotation[];\n    seriesIndex: number;\n    x: number[];\n    y: number[];\n  }[]\n): Plotly.Data[] {\n  const traces: Plotly.Data[] = [];\n\n  for (const { peaks, seriesIndex, x } of allPeaks) {\n    const seriesColor = CHART_COLORS[seriesIndex % CHART_COLORS.length];\n    // Separate y positions for start vs end markers to prevent overlap when peaks are adjacent\n    // Also stagger by series index to prevent overlap between different traces\n    const startMarkerY = BOUNDARY_MARKER_START_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n    const endMarkerY = BOUNDARY_MARKER_END_Y + seriesIndex * BOUNDARY_MARKER_SERIES_OFFSET;\n\n    for (const peak of peaks) {\n      const startIdx = peak._computed?.startIndex ?? 0;\n      const endIdx = peak._computed?.endIndex ?? 0;\n      const startX = x[startIdx];\n      const endX = x[endIdx];\n\n      // Get marker types with defaults: triangle at start, diamond at end\n      const startMarkerType = peak.startMarker ?? \"triangle\";\n      const endMarkerType = peak.endMarker ?? \"diamond\";\n\n      const color = peak.color ?? seriesColor;\n\n      // Create start boundary marker (upper row, staggered by series)\n      traces.push(...createMarkerTrace(startX, startMarkerY, startMarkerType, color));\n\n      // Create end boundary marker (lower row, staggered by series)\n      traces.push(...createMarkerTrace(endX, endMarkerY, endMarkerType, color));\n    }\n  }\n\n  return traces;\n}\n\n"],"names":["BOUNDARY_MARKER_START_Y","BOUNDARY_MARKER_END_Y","BOUNDARY_MARKER_SERIES_OFFSET","createMarkerTrace","xPos","yPos","markerType","color","createBoundaryMarkerTraces","allPeaks","traces","peaks","seriesIndex","x","seriesColor","CHART_COLORS","startMarkerY","endMarkerY","peak","startIdx","endIdx","startX","endX","startMarkerType","endMarkerType"],"mappings":";AAUA,MAAMA,IAA0B,IAE1BC,IAAwB,KAExBC,IAAgC;AAMtC,SAASC,EACPC,GACAC,GACAC,GACAC,GACe;AACf,SAAID,MAAe,SACV,CAAA,IAGF;AAAA,IACL;AAAA,MACE,GAAG,CAACF,CAAI;AAAA,MACR,GAAG,CAACC,CAAI;AAAA,MACR,MAAM;AAAA,MACN,MAAM;AAAA,MACN,QAAQ;AAAA,QACN,QAAQC,MAAe,YAAa,YAAuB;AAAA,QAC3D,MAAM;AAAA,QACN,OAAAC;AAAA,MAAA;AAAA,MAEF,YAAY;AAAA,MACZ,WAAW;AAAA,IAAA;AAAA,EACb;AAEJ;AAQO,SAASC,EACdC,GAMe;AACf,QAAMC,IAAwB,CAAA;AAE9B,aAAW,EAAE,OAAAC,GAAO,aAAAC,GAAa,GAAAC,EAAA,KAAOJ,GAAU;AAChD,UAAMK,IAAcC,EAAaH,IAAcG,EAAa,MAAM,GAG5DC,IAAehB,IAA0BY,IAAcV,GACvDe,IAAahB,IAAwBW,IAAcV;AAEzD,eAAWgB,KAAQP,GAAO;AACxB,YAAMQ,IAAWD,EAAK,WAAW,cAAc,GACzCE,IAASF,EAAK,WAAW,YAAY,GACrCG,IAASR,EAAEM,CAAQ,GACnBG,IAAOT,EAAEO,CAAM,GAGfG,IAAkBL,EAAK,eAAe,YACtCM,IAAgBN,EAAK,aAAa,WAElCX,IAAQW,EAAK,SAASJ;AAG5B,MAAAJ,EAAO,KAAK,GAAGP,EAAkBkB,GAAQL,GAAcO,GAAiBhB,CAAK,CAAC,GAG9EG,EAAO,KAAK,GAAGP,EAAkBmB,GAAML,GAAYO,GAAejB,CAAK,CAAC;AAAA,IAC1E;AAAA,EACF;AAEA,SAAOG;AACT;"}

package/dist/components/charts/{ChromatogramChart → Chromatogram}/constants.cjs

@@ -1,2 +1,2 @@
-"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const O={MARGIN_LEFT:70,MARGIN_RIGHT:30,MARGIN_BOTTOM:60,MARGIN_TOP_WITH_TITLE:50,MARGIN_TOP_NO_TITLE:30,MARGIN_PAD:5},T={USER_ANNOTATION_FONT_SIZE:11,AUTO_ANNOTATION_FONT_SIZE:10,USER_ANNOTATION_COLOR:"rgba(100, 116, 139, 1)",USER_ANNOTATION_TEXT_COLOR:"rgba(26, 26, 26, 1)",BACKGROUND_COLOR:"#ffffff"};exports.CHROMATOGRAM_ANNOTATION=T;exports.CHROMATOGRAM_LAYOUT=O;
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const O={MARGIN_LEFT:70,MARGIN_RIGHT:30,MARGIN_BOTTOM:60,MARGIN_TOP_WITH_TITLE:50,MARGIN_TOP_NO_TITLE:30,MARGIN_PAD:5},T={USER_ANNOTATION_FONT_SIZE:11,AUTO_ANNOTATION_FONT_SIZE:10,USER_ANNOTATION_COLOR:"rgba(100, 116, 139, 1)",USER_ANNOTATION_TEXT_COLOR:"rgba(26, 26, 26, 1)",BACKGROUND_COLOR:"#ffffff",INLINE_YSHIFT:4},A={BASE_LINE_WIDTH:1.5};exports.CHROMATOGRAM_ANNOTATION=T;exports.CHROMATOGRAM_LAYOUT=O;exports.CHROMATOGRAM_TRACE=A;
 //# sourceMappingURL=constants.cjs.map

package/dist/components/charts/Chromatogram/constants.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.cjs","sources":["../../../../src/components/charts/Chromatogram/constants.ts"],"sourcesContent":["/**\n * Constants for Chromatogram component\n */\n\n/**\n * Layout constants for chart margins and spacing\n */\nexport const CHROMATOGRAM_LAYOUT = {\n  /** Left margin in pixels */\n  MARGIN_LEFT: 70,\n  /** Right margin in pixels */\n  MARGIN_RIGHT: 30,\n  /** Bottom margin in pixels */\n  MARGIN_BOTTOM: 60,\n  /** Top margin with title in pixels */\n  MARGIN_TOP_WITH_TITLE: 50,\n  /** Top margin without title in pixels */\n  MARGIN_TOP_NO_TITLE: 30,\n  /** Padding around plot area */\n  MARGIN_PAD: 5,\n} as const;\n\n/**\n * Annotation constants for peak labels and markers\n */\nexport const CHROMATOGRAM_ANNOTATION = {\n  /** Default vertical offset for annotation arrows (negative = above point) */\n  DEFAULT_ARROW_OFFSET_Y: -30,\n  /** Font size for user-defined annotations */\n  USER_ANNOTATION_FONT_SIZE: 11,\n  /** Font size for auto-detected peak annotations */\n  AUTO_ANNOTATION_FONT_SIZE: 10,\n  /** Arrow color for user-defined annotations (grey 500) */\n  USER_ANNOTATION_COLOR: \"rgba(100, 116, 139, 1)\",\n  /** Text color for user-defined annotations (black 900) */\n  USER_ANNOTATION_TEXT_COLOR: \"rgba(26, 26, 26, 1)\",\n  /** Background color behind annotation text */\n  BACKGROUND_COLOR: \"#ffffff\",\n  /** Pixel offset above the data point for inline-style annotations (no arrow) */\n  INLINE_YSHIFT: 4,\n} as const;\n\n/**\n * Trace rendering constants\n */\nexport const CHROMATOGRAM_TRACE = {\n  /** Base line width in pixels for all series traces */\n  BASE_LINE_WIDTH: 1.5,\n} as const;\n\n\n"],"names":["CHROMATOGRAM_LAYOUT","CHROMATOGRAM_ANNOTATION","CHROMATOGRAM_TRACE"],"mappings":"gFAOO,MAAMA,EAAsB,CAEjC,YAAa,GAEb,aAAc,GAEd,cAAe,GAEf,sBAAuB,GAEvB,oBAAqB,GAErB,WAAY,CACd,EAKaC,EAA0B,CAIrC,0BAA2B,GAE3B,0BAA2B,GAE3B,sBAAuB,yBAEvB,2BAA4B,sBAE5B,iBAAkB,UAElB,cAAe,CACjB,EAKaC,EAAqB,CAEhC,gBAAiB,GACnB"}

package/dist/components/charts/{ChromatogramChart → Chromatogram}/constants.js

@@ -1,4 +1,4 @@
-const O = {
+const T = {
   /** Left margin in pixels */
   MARGIN_LEFT: 70,
   /** Right margin in pixels */
@@ -11,7 +11,7 @@ const O = {
   MARGIN_TOP_NO_TITLE: 30,
   /** Padding around plot area */
   MARGIN_PAD: 5
-}, T = {
+}, O = {
   /** Font size for user-defined annotations */
   USER_ANNOTATION_FONT_SIZE: 11,
   /** Font size for auto-detected peak annotations */
@@ -21,10 +21,16 @@ const O = {
   /** Text color for user-defined annotations (black 900) */
   USER_ANNOTATION_TEXT_COLOR: "rgba(26, 26, 26, 1)",
   /** Background color behind annotation text */
-  BACKGROUND_COLOR: "#ffffff"
+  BACKGROUND_COLOR: "#ffffff",
+  /** Pixel offset above the data point for inline-style annotations (no arrow) */
+  INLINE_YSHIFT: 4
+}, A = {
+  /** Base line width in pixels for all series traces */
+  BASE_LINE_WIDTH: 1.5
 };
 export {
-  T as CHROMATOGRAM_ANNOTATION,
-  O as CHROMATOGRAM_LAYOUT
+  O as CHROMATOGRAM_ANNOTATION,
+  T as CHROMATOGRAM_LAYOUT,
+  A as CHROMATOGRAM_TRACE
 };
 //# sourceMappingURL=constants.js.map

package/dist/components/charts/Chromatogram/constants.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.js","sources":["../../../../src/components/charts/Chromatogram/constants.ts"],"sourcesContent":["/**\n * Constants for Chromatogram component\n */\n\n/**\n * Layout constants for chart margins and spacing\n */\nexport const CHROMATOGRAM_LAYOUT = {\n  /** Left margin in pixels */\n  MARGIN_LEFT: 70,\n  /** Right margin in pixels */\n  MARGIN_RIGHT: 30,\n  /** Bottom margin in pixels */\n  MARGIN_BOTTOM: 60,\n  /** Top margin with title in pixels */\n  MARGIN_TOP_WITH_TITLE: 50,\n  /** Top margin without title in pixels */\n  MARGIN_TOP_NO_TITLE: 30,\n  /** Padding around plot area */\n  MARGIN_PAD: 5,\n} as const;\n\n/**\n * Annotation constants for peak labels and markers\n */\nexport const CHROMATOGRAM_ANNOTATION = {\n  /** Default vertical offset for annotation arrows (negative = above point) */\n  DEFAULT_ARROW_OFFSET_Y: -30,\n  /** Font size for user-defined annotations */\n  USER_ANNOTATION_FONT_SIZE: 11,\n  /** Font size for auto-detected peak annotations */\n  AUTO_ANNOTATION_FONT_SIZE: 10,\n  /** Arrow color for user-defined annotations (grey 500) */\n  USER_ANNOTATION_COLOR: \"rgba(100, 116, 139, 1)\",\n  /** Text color for user-defined annotations (black 900) */\n  USER_ANNOTATION_TEXT_COLOR: \"rgba(26, 26, 26, 1)\",\n  /** Background color behind annotation text */\n  BACKGROUND_COLOR: \"#ffffff\",\n  /** Pixel offset above the data point for inline-style annotations (no arrow) */\n  INLINE_YSHIFT: 4,\n} as const;\n\n/**\n * Trace rendering constants\n */\nexport const CHROMATOGRAM_TRACE = {\n  /** Base line width in pixels for all series traces */\n  BASE_LINE_WIDTH: 1.5,\n} as const;\n\n\n"],"names":["CHROMATOGRAM_LAYOUT","CHROMATOGRAM_ANNOTATION","CHROMATOGRAM_TRACE"],"mappings":"AAOO,MAAMA,IAAsB;AAAA;AAAA,EAEjC,aAAa;AAAA;AAAA,EAEb,cAAc;AAAA;AAAA,EAEd,eAAe;AAAA;AAAA,EAEf,uBAAuB;AAAA;AAAA,EAEvB,qBAAqB;AAAA;AAAA,EAErB,YAAY;AACd,GAKaC,IAA0B;AAAA;AAAA,EAIrC,2BAA2B;AAAA;AAAA,EAE3B,2BAA2B;AAAA;AAAA,EAE3B,uBAAuB;AAAA;AAAA,EAEvB,4BAA4B;AAAA;AAAA,EAE5B,kBAAkB;AAAA;AAAA,EAElB,eAAe;AACjB,GAKaC,IAAqB;AAAA;AAAA,EAEhC,iBAAiB;AACnB;"}

package/dist/components/charts/Chromatogram/dataProcessing.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const u=require("./peakDetection.cjs");function s(t,i){if(t.length===0||t.length===1)return 0;let n=0,e=t.length-1;for(;n<e;){const o=Math.floor((n+e)/2);t[o]<i?n=o+1:e=o}return n>0&&Math.abs(t[n-1]-i)<Math.abs(t[n]-i)?n-1:n}function d(t,i,n){return t.map(e=>{if(e.startX!==void 0&&e.endX!==void 0){const o=s(i,e.startX),l=s(i,e.endX),r=s(i,e.x),a=e._computed?.area??u.calculatePeakArea(i,n,o,l);return{...e,_computed:{...e._computed,index:r,startIndex:o,endIndex:l,area:a}}}return e})}function h(t,i,n){const e=[];t.forEach(({peaks:l,seriesIndex:r})=>{e.push({peaks:l,seriesIndex:r,x:n[r].x,y:n[r].y})});const o=i.filter(l=>l._computed?.startIndex!==void 0&&l._computed?.endIndex!==void 0);return o.length>0&&n.length>0&&e.push({peaks:o,seriesIndex:0,x:n[0].x,y:n[0].y}),e}function f(t,i){if(!i)return t;const n=[];for(const[e,o]of Object.entries(i))if(o!=null&&o!==""){const l=e.replace(/([A-Z])/g," $1").replace(/^./,r=>r.toUpperCase()).trim();n.push(`${l}: ${String(o)}`)}return n.length>0?`${t}<br>${n.join("<br>")}`:t}function p(t,i){const n=Math.min(t.length,i.length),e=t.slice(0,n),l=i.slice(0,n).map(a=>Number.isFinite(a)?a:0);return{x:e.map(a=>Number.isFinite(a)?a:0),y:l}}function g(t,i,n=50){if(i==="none"||t.length===0)return t;if(i==="linear"){if(t.length===1)return[0];const e=(t[t.length-1]-t[0])/(t.length-1);return t.map((o,l)=>o-(t[0]+e*l))}if(i==="rolling"){const e=[],o=Math.floor(n/2);for(let l=0;l<t.length;l++){const r=Math.max(0,l-o),a=Math.min(t.length,l+o+1),c=t.slice(r,a);e.push(Math.min(...c))}return t.map((l,r)=>l-e[r])}return t}exports.applyBaselineCorrection=g;exports.buildHoverExtraContent=f;exports.collectPeaksWithBoundaryData=h;exports.findClosestIndex=s;exports.processUserAnnotations=d;exports.validateSeriesData=p;
+//# sourceMappingURL=dataProcessing.cjs.map

package/dist/components/charts/Chromatogram/dataProcessing.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"dataProcessing.cjs","sources":["../../../../src/components/charts/Chromatogram/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for Chromatogram\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? calculatePeakArea(xArray, yArray, startIndex, endIndex);\n\n      return {\n        ...ann,\n        _computed: {\n          ...ann._computed,\n          index,\n          startIndex,\n          endIndex,\n          area,\n        },\n      };\n    }\n    return ann;\n  });\n}\n\n/**\n * Collect peaks with boundary information from both auto-detected peaks and user-provided annotations.\n * User-provided annotations with startIndex/endIndex or startX/endX are included for boundary marker rendering.\n */\nexport function collectPeaksWithBoundaryData(\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[],\n  annotations: PeakAnnotation[],\n  processedSeries: { x: number[]; y: number[] }[]\n): PeakDataWithSeries[] {\n  const peaksWithData: PeakDataWithSeries[] = [];\n\n  // Add auto-detected peaks\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    peaksWithData.push({\n      peaks,\n      seriesIndex,\n      x: processedSeries[seriesIndex].x,\n      y: processedSeries[seriesIndex].y,\n    });\n  });\n\n  // Add user-provided annotations that have boundary info (_computed.startIndex and _computed.endIndex)\n  // Note: annotations with startX/endX should already be processed to have _computed fields\n  const annotationsWithBoundaries = annotations.filter(\n    (ann) => ann._computed?.startIndex !== undefined && ann._computed?.endIndex !== undefined\n  );\n  if (annotationsWithBoundaries.length > 0 && processedSeries.length > 0) {\n    peaksWithData.push({\n      peaks: annotationsWithBoundaries,\n      seriesIndex: 0, // User annotations apply to first series by default\n      x: processedSeries[0].x,\n      y: processedSeries[0].y,\n    });\n  }\n\n  return peaksWithData;\n}\n\n/**\n * Build the extra content for Plotly hovertemplate from series metadata.\n * Displays all metadata fields as key: value pairs.\n */\nexport function buildHoverExtraContent(\n  seriesName: string,\n  metadata?: Record<string, unknown>\n): string {\n  if (!metadata) return seriesName;\n\n  const metaLines: string[] = [];\n  for (const [key, value] of Object.entries(metadata)) {\n    if (value !== undefined && value !== null && value !== \"\") {\n      // Format the key as Title Case (e.g., \"sampleName\" -> \"Sample Name\")\n      const formattedKey = key\n        .replace(/([A-Z])/g, \" $1\")\n        .replace(/^./, (s) => s.toUpperCase())\n        .trim();\n      metaLines.push(`${formattedKey}: ${String(value)}`);\n    }\n  }\n\n  if (metaLines.length > 0) {\n    return `${seriesName}<br>${metaLines.join(\"<br>\")}`;\n  }\n  return seriesName;\n}\n\n/**\n * Validate and sanitize series data.\n * - Ensures x and y arrays have the same length (truncates to shorter)\n * - Replaces NaN and Infinity values with 0\n */\nexport function validateSeriesData(\n  x: number[],\n  y: number[]\n): { x: number[]; y: number[] } {\n  // Ensure arrays have same length\n  const length = Math.min(x.length, y.length);\n  const validX = x.slice(0, length);\n  const validY = y.slice(0, length);\n\n  // Sanitize NaN and Infinity values\n  const sanitizedY = validY.map((val) => (Number.isFinite(val) ? 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package/dist/components/charts/Chromatogram/dataProcessing.js

@@ -0,0 +1,90 @@
+import { calculatePeakArea as a } from "./peakDetection.js";
+function s(t, i) {
+  if (t.length === 0 || t.length === 1) return 0;
+  let e = 0, n = t.length - 1;
+  for (; e < n; ) {
+    const o = Math.floor((e + n) / 2);
+    t[o] < i ? e = o + 1 : n = o;
+  }
+  return e > 0 && Math.abs(t[e - 1] - i) < Math.abs(t[e] - i) ? e - 1 : e;
+}
+function f(t, i, e) {
+  return t.map((n) => {
+    if (n.startX !== void 0 && n.endX !== void 0) {
+      const o = s(i, n.startX), l = s(i, n.endX), r = s(i, n.x), c = n._computed?.area ?? a(i, e, o, l);
+      return {
+        ...n,
+        _computed: {
+          ...n._computed,
+          index: r,
+          startIndex: o,
+          endIndex: l,
+          area: c
+        }
+      };
+    }
+    return n;
+  });
+}
+function d(t, i, e) {
+  const n = [];
+  t.forEach(({ peaks: l, seriesIndex: r }) => {
+    n.push({
+      peaks: l,
+      seriesIndex: r,
+      x: e[r].x,
+      y: e[r].y
+    });
+  });
+  const o = i.filter(
+    (l) => l._computed?.startIndex !== void 0 && l._computed?.endIndex !== void 0
+  );
+  return o.length > 0 && e.length > 0 && n.push({
+    peaks: o,
+    seriesIndex: 0,
+    // User annotations apply to first series by default
+    x: e[0].x,
+    y: e[0].y
+  }), n;
+}
+function p(t, i) {
+  if (!i) return t;
+  const e = [];
+  for (const [n, o] of Object.entries(i))
+    if (o != null && o !== "") {
+      const l = n.replace(/([A-Z])/g, " $1").replace(/^./, (r) => r.toUpperCase()).trim();
+      e.push(`${l}: ${String(o)}`);
+    }
+  return e.length > 0 ? `${t}<br>${e.join("<br>")}` : t;
+}
+function g(t, i) {
+  const e = Math.min(t.length, i.length), n = t.slice(0, e), l = i.slice(0, e).map((c) => Number.isFinite(c) ? c : 0);
+  return { x: n.map((c) => Number.isFinite(c) ? c : 0), y: l };
+}
+function m(t, i, e = 50) {
+  if (i === "none" || t.length === 0) return t;
+  if (i === "linear") {
+    if (t.length === 1)
+      return [0];
+    const n = (t[t.length - 1] - t[0]) / (t.length - 1);
+    return t.map((o, l) => o - (t[0] + n * l));
+  }
+  if (i === "rolling") {
+    const n = [], o = Math.floor(e / 2);
+    for (let l = 0; l < t.length; l++) {
+      const r = Math.max(0, l - o), c = Math.min(t.length, l + o + 1), u = t.slice(r, c);
+      n.push(Math.min(...u));
+    }
+    return t.map((l, r) => l - n[r]);
+  }
+  return t;
+}
+export {
+  m as applyBaselineCorrection,
+  p as buildHoverExtraContent,
+  d as collectPeaksWithBoundaryData,
+  s as findClosestIndex,
+  f as processUserAnnotations,
+  g as validateSeriesData
+};
+//# sourceMappingURL=dataProcessing.js.map

package/dist/components/charts/Chromatogram/dataProcessing.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"dataProcessing.js","sources":["../../../../src/components/charts/Chromatogram/dataProcessing.ts"],"sourcesContent":["/**\n * Data processing utilities for Chromatogram\n */\n\nimport { calculatePeakArea } from \"./peakDetection\";\n\nimport type { BaselineCorrectionMethod, PeakAnnotation } from \"./types\";\n\n/**\n * Data structure for peaks with their associated series data\n */\nexport type PeakDataWithSeries = {\n  peaks: PeakAnnotation[];\n  seriesIndex: number;\n  x: number[];\n  y: number[];\n};\n\n/**\n * Find the closest index in an array for a given target value.\n * Uses binary search for efficiency.\n */\nexport function findClosestIndex(arr: number[], target: number): number {\n  if (arr.length === 0) return 0;\n  if (arr.length === 1) return 0;\n\n  let left = 0;\n  let right = arr.length - 1;\n\n  while (left < right) {\n    const mid = Math.floor((left + right) / 2);\n    if (arr[mid] < target) {\n      left = mid + 1;\n    } else {\n      right = mid;\n    }\n  }\n\n  // Check if left-1 is closer\n  if (left > 0 && Math.abs(arr[left - 1] - target) < Math.abs(arr[left] - target)) {\n    return left - 1;\n  }\n  return left;\n}\n\n/**\n * Process user annotations to convert startX/endX to startIndex/endIndex\n * and compute area if boundaries are provided.\n */\nexport function processUserAnnotations(\n  annotations: PeakAnnotation[],\n  xArray: number[],\n  yArray: number[]\n): PeakAnnotation[] {\n  return annotations.map((ann) => {\n    // If startX/endX are provided, convert to indices\n    if (ann.startX !== undefined && ann.endX !== undefined) {\n      const startIndex = findClosestIndex(xArray, ann.startX);\n      const endIndex = findClosestIndex(xArray, ann.endX);\n      const index = findClosestIndex(xArray, ann.x);\n\n      // Calculate area if not provided\n      const area = ann._computed?.area ?? calculatePeakArea(xArray, yArray, startIndex, endIndex);\n\n      return {\n        ...ann,\n        _computed: {\n          ...ann._computed,\n          index,\n          startIndex,\n          endIndex,\n          area,\n        },\n      };\n    }\n    return ann;\n  });\n}\n\n/**\n * Collect peaks with boundary information from both auto-detected peaks and user-provided annotations.\n * User-provided annotations with startIndex/endIndex or startX/endX are included for boundary marker rendering.\n */\nexport function collectPeaksWithBoundaryData(\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[],\n  annotations: PeakAnnotation[],\n  processedSeries: { x: number[]; y: number[] }[]\n): PeakDataWithSeries[] {\n  const peaksWithData: PeakDataWithSeries[] = [];\n\n  // Add auto-detected peaks\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    peaksWithData.push({\n      peaks,\n      seriesIndex,\n      x: processedSeries[seriesIndex].x,\n      y: processedSeries[seriesIndex].y,\n    });\n  });\n\n  // Add user-provided annotations that have boundary info (_computed.startIndex and _computed.endIndex)\n  // Note: annotations with startX/endX should already be processed to have _computed fields\n  const annotationsWithBoundaries = annotations.filter(\n    (ann) => ann._computed?.startIndex !== undefined && ann._computed?.endIndex !== undefined\n  );\n  if (annotationsWithBoundaries.length > 0 && processedSeries.length > 0) {\n    peaksWithData.push({\n      peaks: annotationsWithBoundaries,\n      seriesIndex: 0, // User annotations apply to first series by default\n      x: processedSeries[0].x,\n      y: processedSeries[0].y,\n    });\n  }\n\n  return peaksWithData;\n}\n\n/**\n * Build the extra content for Plotly hovertemplate from series metadata.\n * Displays all metadata fields as key: value pairs.\n */\nexport function buildHoverExtraContent(\n  seriesName: string,\n  metadata?: Record<string, unknown>\n): string {\n  if (!metadata) return seriesName;\n\n  const metaLines: string[] = [];\n  for (const [key, value] of Object.entries(metadata)) {\n    if (value !== undefined && value !== null && value !== \"\") {\n      // Format the key as Title Case (e.g., \"sampleName\" -> \"Sample Name\")\n      const formattedKey = key\n        .replace(/([A-Z])/g, \" $1\")\n        .replace(/^./, (s) => s.toUpperCase())\n        .trim();\n      metaLines.push(`${formattedKey}: ${String(value)}`);\n    }\n  }\n\n  if (metaLines.length > 0) {\n    return `${seriesName}<br>${metaLines.join(\"<br>\")}`;\n  }\n  return seriesName;\n}\n\n/**\n * Validate and sanitize series data.\n * - Ensures x and y arrays have the same length (truncates to shorter)\n * - Replaces NaN and Infinity values with 0\n */\nexport function validateSeriesData(\n  x: number[],\n  y: number[]\n): { x: number[]; y: number[] } {\n  // Ensure arrays have same length\n  const length = Math.min(x.length, y.length);\n  const validX = x.slice(0, length);\n  const validY = y.slice(0, length);\n\n  // Sanitize NaN and Infinity values\n  const sanitizedY = validY.map((val) => (Number.isFinite(val) ? 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package/dist/components/charts/Chromatogram/peakDetection.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"peakDetection.cjs","sources":["../../../../src/components/charts/Chromatogram/peakDetection.ts"],"sourcesContent":["/**\n * Peak detection algorithms for Chromatogram\n */\n\nimport type { PeakAnnotation, PeakDetectionOptions } from \"./types\";\n\n/**\n * Calculate prominence of a peak (how much it stands out from neighbors)\n */\nexport function calculateProminence(\n  y: number[],\n  peakIndex: number,\n  searchWindow: number\n): number {\n  let leftMin = y[peakIndex];\n  let rightMin = y[peakIndex];\n\n  for (let j = peakIndex - 1; j >= Math.max(0, peakIndex - searchWindow); j--) {\n    leftMin = Math.min(leftMin, y[j]);\n  }\n  for (\n    let j = peakIndex + 1;\n    j < Math.min(y.length, peakIndex + searchWindow);\n    j++\n  ) {\n    rightMin = Math.min(rightMin, y[j]);\n  }\n\n  return y[peakIndex] - Math.max(leftMin, rightMin);\n}\n\n/**\n * Find peak boundary indices by walking outward from peak\n */\nexport function findPeakBoundaries(\n  y: number[],\n  peakIndex: number\n): { startIndex: number; endIndex: number } {\n  let startIndex = peakIndex;\n  let endIndex = peakIndex;\n\n  // Walk left to find start\n  for (let j = peakIndex - 1; j >= 0; j--) {\n    if (y[j] <= y[j + 1]) {\n      startIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  // Walk right to find end\n  for (let j = peakIndex + 1; j < y.length; j++) {\n    if (y[j] <= y[j - 1]) {\n      endIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  return { startIndex, endIndex };\n}\n\n/**\n * Calculate peak area using trapezoidal integration\n */\nexport function calculatePeakArea(\n  x: number[],\n  y: number[],\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  let area = 0;\n\n  for (let j = startIndex; j < endIndex; j++) {\n    const h = x[j + 1] - x[j];\n    const y1 = y[j] - baselineY;\n    const y2 = y[j + 1] - baselineY;\n    area += ((y1 + y2) * h) / 2;\n  }\n\n  return area;\n}\n\n/**\n * Calculate width at half maximum of a peak\n */\nexport function calculateWidthAtHalfMax(\n  x: number[],\n  y: number[],\n  peakIndex: number,\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  const halfMax = (y[peakIndex] + baselineY) / 2;\n  let leftHalf = peakIndex;\n  let rightHalf = peakIndex;\n\n  for (let j = peakIndex; j >= startIndex; j--) {\n    if (y[j] < halfMax) {\n      leftHalf = j;\n      break;\n    }\n  }\n  for (let j = peakIndex; j <= endIndex; j++) {\n    if (y[j] < halfMax) {\n      rightHalf = j;\n      break;\n    }\n  }\n\n  return x[rightHalf] - x[leftHalf];\n}\n\n/**\n * Filter peaks by minimum distance, keeping more intense peaks\n */\nexport function filterPeaksByDistance(\n  peaks: PeakAnnotation[],\n  minDistance: number\n): PeakAnnotation[] {\n  const filtered: PeakAnnotation[] = [];\n\n  for (const peak of peaks) {\n    const tooClose = filtered.some(\n      (p) => Math.abs((p._computed?.index ?? 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package/dist/components/charts/Chromatogram/peakDetection.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"peakDetection.js","sources":["../../../../src/components/charts/Chromatogram/peakDetection.ts"],"sourcesContent":["/**\n * Peak detection algorithms for Chromatogram\n */\n\nimport type { PeakAnnotation, PeakDetectionOptions } from \"./types\";\n\n/**\n * Calculate prominence of a peak (how much it stands out from neighbors)\n */\nexport function calculateProminence(\n  y: number[],\n  peakIndex: number,\n  searchWindow: number\n): number {\n  let leftMin = y[peakIndex];\n  let rightMin = y[peakIndex];\n\n  for (let j = peakIndex - 1; j >= Math.max(0, peakIndex - searchWindow); j--) {\n    leftMin = Math.min(leftMin, y[j]);\n  }\n  for (\n    let j = peakIndex + 1;\n    j < Math.min(y.length, peakIndex + searchWindow);\n    j++\n  ) {\n    rightMin = Math.min(rightMin, y[j]);\n  }\n\n  return y[peakIndex] - Math.max(leftMin, rightMin);\n}\n\n/**\n * Find peak boundary indices by walking outward from peak\n */\nexport function findPeakBoundaries(\n  y: number[],\n  peakIndex: number\n): { startIndex: number; endIndex: number } {\n  let startIndex = peakIndex;\n  let endIndex = peakIndex;\n\n  // Walk left to find start\n  for (let j = peakIndex - 1; j >= 0; j--) {\n    if (y[j] <= y[j + 1]) {\n      startIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  // Walk right to find end\n  for (let j = peakIndex + 1; j < y.length; j++) {\n    if (y[j] <= y[j - 1]) {\n      endIndex = j;\n    } else {\n      break;\n    }\n  }\n\n  return { startIndex, endIndex };\n}\n\n/**\n * Calculate peak area using trapezoidal integration\n */\nexport function calculatePeakArea(\n  x: number[],\n  y: number[],\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  let area = 0;\n\n  for (let j = startIndex; j < endIndex; j++) {\n    const h = x[j + 1] - x[j];\n    const y1 = y[j] - baselineY;\n    const y2 = y[j + 1] - baselineY;\n    area += ((y1 + y2) * h) / 2;\n  }\n\n  return area;\n}\n\n/**\n * Calculate width at half maximum of a peak\n */\nexport function calculateWidthAtHalfMax(\n  x: number[],\n  y: number[],\n  peakIndex: number,\n  startIndex: number,\n  endIndex: number\n): number {\n  const baselineY = Math.min(y[startIndex], y[endIndex]);\n  const halfMax = (y[peakIndex] + baselineY) / 2;\n  let leftHalf = peakIndex;\n  let rightHalf = peakIndex;\n\n  for (let j = peakIndex; j >= startIndex; j--) {\n    if (y[j] < halfMax) {\n      leftHalf = j;\n      break;\n    }\n  }\n  for (let j = peakIndex; j <= endIndex; j++) {\n    if (y[j] < halfMax) {\n      rightHalf = j;\n      break;\n    }\n  }\n\n  return x[rightHalf] - x[leftHalf];\n}\n\n/**\n * Filter peaks by minimum distance, keeping more intense peaks\n */\nexport function filterPeaksByDistance(\n  peaks: PeakAnnotation[],\n  minDistance: number\n): PeakAnnotation[] {\n  const filtered: PeakAnnotation[] = [];\n\n  for (const peak of peaks) {\n    const tooClose = filtered.some(\n      (p) => Math.abs((p._computed?.index ?? 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package/dist/components/charts/Chromatogram/plotBuilder.cjs

@@ -0,0 +1,2 @@
+"use strict";Object.defineProperty(exports,Symbol.toStringTag,{value:"Module"});const f=require("../../../utils/colors.cjs"),y=require("../plotly-loader.cjs"),C=require("./boundaryMarkers.cjs"),c=require("./constants.cjs"),g=require("./dataProcessing.cjs"),_=require("./regionOverlays.cjs"),p=require("../../../hooks/use-plotly-theme.cjs");function M(n){const{processedSeries:e,processedAnnotations:a,allDetectedPeaks:i,allPeaksForInteraction:s,showMarkers:d,markerSize:T,xAxisTitle:m,yAxisTitle:l,boundaryMarkers:O}=n,A=e.map((o,u)=>{const t=o.color||f.CHART_COLORS[u%f.CHART_COLORS.length],h=g.buildHoverExtraContent(o.name,o.metadata),r={x:o.x,y:o.y,type:"scatter",mode:d?"lines+markers":"lines",name:o.name,line:{color:t,width:c.CHROMATOGRAM_TRACE.BASE_LINE_WIDTH},hovertemplate:`%{x:.2f} ${m}<br>%{y:.2f} ${l}<extra>${h}</extra>`};return d&&(r.marker={size:T,color:t}),r});if(O!=="none"){const o=g.collectPeaksWithBoundaryData(i,a,e);o.length>0&&A.push(...C.createBoundaryMarkerTraces(o))}if(a.forEach(o=>{o.regionOverlay&&e[0]&&A.push(..._.createRegionOverlayTraces([o],0,e[0]))}),i.forEach(({peaks:o,seriesIndex:u})=>{o.some(t=>t.regionOverlay)&&e[u]&&A.push(..._.createRegionOverlayTraces(o,u,e[u]))}),s.length>0){const o=s.some(t=>t.peak.hoverText),u={x:s.map(t=>t.peak.x),y:s.map(t=>t.peak.y),type:"scatter",mode:"markers",marker:{size:14,opacity:0},showlegend:!1,name:"",customdata:s.map(t=>({id:t.peak.id,peak:t.peak,seriesIndex:t.seriesIndex,seriesName:t.seriesName,isAutoDetected:t.isAutoDetected})),...o?{hovertemplate:s.map(t=>t.peak.hoverText?`${t.peak.hoverText}<extra></extra>`:"<extra></extra>")}:{hovertemplate:"<extra></extra>"}};A.push(u)}return A}function R(n){const{title:e,titleFontSize:a,titleTopMargin:i,width:s,height:d,xAxisTitle:T,yAxisTitle:m,xRange:l,yRange:O,showLegend:A,seriesCount:o,showGridX:u,showGridY:t,showCrosshairs:h,theme:r,peakAnnotations:x}=n;return{title:e?{text:e,font:{size:a,family:p.CHART_FONT_FAMILY,color:r.textColor}}:void 0,width:s,height:d,margin:{l:c.CHROMATOGRAM_LAYOUT.MARGIN_LEFT,r:c.CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,b:c.CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,t:e?i??c.CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE:c.CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,pad:c.CHROMATOGRAM_LAYOUT.MARGIN_PAD},paper_bgcolor:r.paperBg,plot_bgcolor:r.plotBg,font:{family:p.CHART_FONT_FAMILY},hovermode:h?"x":"x unified",dragmode:"zoom",xaxis:{title:{text:T,font:{size:14,color:r.textSecondary,family:p.CHART_FONT_FAMILY},standoff:15},showgrid:u,gridcolor:r.gridColor,linecolor:r.lineColor,linewidth:1,range:l,autorange:!l,zeroline:!1,tickfont:{size:12,color:r.textColor,family:p.CHART_FONT_FAMILY},showspikes:h,spikemode:"across",spikesnap:"cursor",spikecolor:r.spikeColor,spikethickness:1,spikedash:"dot"},yaxis:{title:{text:m,font:{size:14,color:r.textSecondary,family:p.CHART_FONT_FAMILY},standoff:10},showgrid:t,gridcolor:r.gridColor,linecolor:r.lineColor,linewidth:1,range:O,autorange:!O,zeroline:!1,tickfont:{size:12,color:r.textColor,family:p.CHART_FONT_FAMILY},showspikes:h,spikemode:"across",spikesnap:"cursor",spikecolor:r.spikeColor,spikethickness:1,spikedash:"dot"},legend:{x:.5,y:-.15,xanchor:"center",yanchor:"top",orientation:"h",font:{size:12,color:r.textColor,family:p.CHART_FONT_FAMILY}},showlegend:A&&o>1,annotations:x}}function k(n){const{showExportButton:e,width:a,height:i}=n;return{responsive:!0,displayModeBar:!0,displaylogo:!1,modeBarButtonsToRemove:["lasso2d","select2d",...e?[]:["toImage"]],...e&&{toImageButtonOptions:{format:"png",filename:"chromatogram",width:a,height:i}}}}function H(n,e,a,i,s){return d=>{const T=d.points[0];if(T&&T.curveNumber<e){const l=T.curveNumber;a.current!==l&&(a.current!==null&&y.getLoadedPlotly().restyle(n,{"line.width":c.CHROMATOGRAM_TRACE.BASE_LINE_WIDTH},[a.current]),y.getLoadedPlotly().restyle(n,{"line.width":c.CHROMATOGRAM_TRACE.BASE_LINE_WIDTH*s},[l]),a.current=l)}const m=d.points.find(l=>l.customdata!=null);m&&i.current?.(m.customdata)}}function I(n){return e=>{if(!n.current)return;const a=e.points.find(i=>i.customdata!=null);a&&n.current(a.customdata)}}function L(n,e,a){return()=>{a.current?.(null),e.current!==null&&(y.getLoadedPlotly().restyle(n,{"line.width":c.CHROMATOGRAM_TRACE.BASE_LINE_WIDTH},[e.current]),e.current=null)}}exports.buildConfig=k;exports.buildLayout=R;exports.buildTraceData=M;exports.createClickHandler=I;exports.createHoverHandler=H;exports.createUnhoverHandler=L;
+//# sourceMappingURL=plotBuilder.cjs.map

package/dist/components/charts/Chromatogram/plotBuilder.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"plotBuilder.cjs","sources":["../../../../src/components/charts/Chromatogram/plotBuilder.ts"],"sourcesContent":["import { CHART_COLORS } from \"../../../utils/colors\";\nimport { getLoadedPlotly } from \"../plotly-loader\";\n\nimport { createBoundaryMarkerTraces } from \"./boundaryMarkers\";\nimport { CHROMATOGRAM_LAYOUT, CHROMATOGRAM_TRACE } from \"./constants\";\nimport { buildHoverExtraContent, collectPeaksWithBoundaryData } from \"./dataProcessing\";\nimport { createRegionOverlayTraces } from \"./regionOverlays\";\n\nimport type { ChromatogramSeries, PeakAnnotation, BoundaryMarkerStyle, PeakSelectEvent } from \"./types\";\nimport type Plotly from \"plotly.js-dist\";\n\nimport { CHART_FONT_FAMILY, type PlotlyThemeColors } from \"@/hooks/use-plotly-theme\";\n\ntype PeakForInteraction = {\n  peak: PeakAnnotation & { id: string };\n  seriesIndex: number;\n  seriesName: string;\n  isAutoDetected: boolean;\n};\n\ntype BuildTraceDataParams = {\n  processedSeries: ChromatogramSeries[];\n  processedAnnotations: PeakAnnotation[];\n  allDetectedPeaks: { peaks: PeakAnnotation[]; seriesIndex: number }[];\n  allPeaksForInteraction: PeakForInteraction[];\n  showMarkers: boolean;\n  markerSize: number;\n  xAxisTitle: string;\n  yAxisTitle: string;\n  boundaryMarkers: BoundaryMarkerStyle;\n};\n\ntype BuildLayoutParams = {\n  title?: string;\n  titleFontSize: number;\n  titleTopMargin?: number;\n  width: number;\n  height: number;\n  xAxisTitle: string;\n  yAxisTitle: string;\n  xRange?: [number, number];\n  yRange?: [number, number];\n  showLegend: boolean;\n  seriesCount: number;\n  showGridX: boolean;\n  showGridY: boolean;\n  showCrosshairs: boolean;\n  theme: PlotlyThemeColors;\n  peakAnnotations: Partial<Plotly.Annotations>[];\n};\n\ntype BuildConfigParams = {\n  showExportButton: boolean;\n  width: number;\n  height: number;\n};\n\nexport type { PeakForInteraction, BuildTraceDataParams, BuildLayoutParams, BuildConfigParams };\n\nexport function buildTraceData(params: BuildTraceDataParams): Plotly.Data[] {\n  const {\n    processedSeries,\n    processedAnnotations,\n    allDetectedPeaks,\n    allPeaksForInteraction,\n    showMarkers,\n    markerSize,\n    xAxisTitle,\n    yAxisTitle,\n    boundaryMarkers,\n  } = params;\n\n  const plotData: Plotly.Data[] = processedSeries.map((s, index) => {\n    const traceColor = s.color || CHART_COLORS[index % CHART_COLORS.length];\n    const extraContent = buildHoverExtraContent(s.name, s.metadata);\n\n    const trace: Plotly.Data = {\n      x: s.x,\n      y: s.y,\n      type: \"scatter\" as const,\n      mode: showMarkers ? (\"lines+markers\" as const) : (\"lines\" as const),\n      name: s.name,\n      line: {\n        color: traceColor,\n        width: CHROMATOGRAM_TRACE.BASE_LINE_WIDTH,\n      },\n      hovertemplate: `%{x:.2f} ${xAxisTitle}<br>%{y:.2f} ${yAxisTitle}<extra>${extraContent}</extra>`,\n    };\n    if (showMarkers) {\n      trace.marker = { size: markerSize, color: traceColor };\n    }\n    return trace;\n  });\n\n  if (boundaryMarkers !== \"none\") {\n    const peaksWithData = collectPeaksWithBoundaryData(\n      allDetectedPeaks,\n      processedAnnotations,\n      processedSeries\n    );\n    if (peaksWithData.length > 0) {\n      plotData.push(...createBoundaryMarkerTraces(peaksWithData));\n    }\n  }\n\n  processedAnnotations.forEach((ann) => {\n    if (ann.regionOverlay && processedSeries[0]) {\n      plotData.push(...createRegionOverlayTraces([ann], 0, processedSeries[0]));\n    }\n  });\n  allDetectedPeaks.forEach(({ peaks, seriesIndex }) => {\n    if (peaks.some((p) => p.regionOverlay) && processedSeries[seriesIndex]) {\n      plotData.push(...createRegionOverlayTraces(peaks, seriesIndex, processedSeries[seriesIndex]));\n    }\n  });\n\n  if (allPeaksForInteraction.length > 0) {\n    const anyHoverText = allPeaksForInteraction.some((p) => p.peak.hoverText);\n    const hitAreaTrace: Plotly.Data = {\n      x: allPeaksForInteraction.map((p) => p.peak.x),\n      y: allPeaksForInteraction.map((p) => p.peak.y),\n      type: \"scatter\" as const,\n      mode: \"markers\" as const,\n      marker: { size: 14, opacity: 0 },\n      showlegend: false,\n      name: \"\",\n      customdata: allPeaksForInteraction.map((p) => ({\n        id: p.peak.id,\n        peak: p.peak,\n        seriesIndex: p.seriesIndex,\n        seriesName: p.seriesName,\n        isAutoDetected: p.isAutoDetected,\n      })) as unknown as Plotly.Datum[],\n      ...(anyHoverText\n        ? {\n            hovertemplate: allPeaksForInteraction.map((p) =>\n              p.peak.hoverText ? `${p.peak.hoverText}<extra></extra>` : \"<extra></extra>\"\n            ),\n          }\n        : { hovertemplate: \"<extra></extra>\" }),\n    };\n    plotData.push(hitAreaTrace);\n  }\n\n  return plotData;\n}\n\nexport function buildLayout(params: BuildLayoutParams): Partial<Plotly.Layout> {\n  const {\n    title,\n    titleFontSize,\n    titleTopMargin,\n    width,\n    height,\n    xAxisTitle,\n    yAxisTitle,\n    xRange,\n    yRange,\n    showLegend,\n    seriesCount,\n    showGridX,\n    showGridY,\n    showCrosshairs,\n    theme,\n    peakAnnotations,\n  } = params;\n\n  return {\n    title: title\n      ? {\n          text: title,\n          font: { size: titleFontSize, family: CHART_FONT_FAMILY, color: theme.textColor },\n        }\n      : undefined,\n    width,\n    height,\n    margin: {\n      l: CHROMATOGRAM_LAYOUT.MARGIN_LEFT,\n      r: CHROMATOGRAM_LAYOUT.MARGIN_RIGHT,\n      b: CHROMATOGRAM_LAYOUT.MARGIN_BOTTOM,\n      t: title\n        ? (titleTopMargin ?? CHROMATOGRAM_LAYOUT.MARGIN_TOP_WITH_TITLE)\n        : CHROMATOGRAM_LAYOUT.MARGIN_TOP_NO_TITLE,\n      pad: CHROMATOGRAM_LAYOUT.MARGIN_PAD,\n    },\n    paper_bgcolor: theme.paperBg,\n    plot_bgcolor: theme.plotBg,\n    font: { family: CHART_FONT_FAMILY },\n    hovermode: showCrosshairs ? (\"x\" as const) : (\"x unified\" as const),\n    dragmode: \"zoom\" as const,\n    xaxis: {\n      title: {\n        text: xAxisTitle,\n        font: { size: 14, color: theme.textSecondary, family: CHART_FONT_FAMILY },\n        standoff: 15,\n      },\n      showgrid: showGridX,\n      gridcolor: theme.gridColor,\n      linecolor: theme.lineColor,\n      linewidth: 1,\n      range: xRange,\n      autorange: !xRange,\n      zeroline: false,\n      tickfont: { size: 12, color: theme.textColor, family: CHART_FONT_FAMILY },\n      showspikes: showCrosshairs,\n      spikemode: \"across\" as const,\n      spikesnap: \"cursor\" as const,\n      spikecolor: theme.spikeColor,\n      spikethickness: 1,\n      spikedash: \"dot\" as const,\n    },\n    yaxis: {\n      title: {\n        text: yAxisTitle,\n        font: { size: 14, color: theme.textSecondary, family: CHART_FONT_FAMILY },\n        standoff: 10,\n      },\n      showgrid: showGridY,\n      gridcolor: theme.gridColor,\n      linecolor: theme.lineColor,\n      linewidth: 1,\n      range: yRange,\n      autorange: !yRange,\n      zeroline: false,\n      tickfont: { size: 12, color: theme.textColor, family: CHART_FONT_FAMILY },\n      showspikes: showCrosshairs,\n      spikemode: \"across\" as const,\n      spikesnap: \"cursor\" as const,\n      spikecolor: theme.spikeColor,\n      spikethickness: 1,\n      spikedash: \"dot\" as const,\n    },\n    legend: {\n      x: 0.5,\n      y: -0.15,\n      xanchor: \"center\" as const,\n      yanchor: \"top\" as const,\n      orientation: \"h\" as const,\n      font: { size: 12, color: theme.textColor, family: CHART_FONT_FAMILY },\n    },\n    showlegend: showLegend && seriesCount > 1,\n    annotations: peakAnnotations,\n  };\n}\n\nexport function buildConfig(params: BuildConfigParams): Partial<Plotly.Config> {\n  const { showExportButton, width, height } = params;\n  return {\n    responsive: true,\n    displayModeBar: true,\n    displaylogo: false,\n    modeBarButtonsToRemove: [\n      \"lasso2d\",\n      \"select2d\",\n      ...(showExportButton ? [] : ([\"toImage\"] as Plotly.ModeBarDefaultButtons[])),\n    ] as Plotly.ModeBarDefaultButtons[],\n    ...(showExportButton && {\n      toImageButtonOptions: {\n        format: \"png\",\n        filename: \"chromatogram\",\n        width,\n        height,\n      },\n    }),\n  };\n}\n\ntype MutableRef<T> = { current: T };\n\nexport function createHoverHandler(\n  domElement: HTMLElement,\n  processedSeriesLength: number,\n  thickenedSeriesRef: MutableRef<number | null>,\n  onPeakHoverRef: MutableRef<((event: PeakSelectEvent | null) => void) | undefined>,\n  hoverLineWidthMultiplier: number\n): (eventData: Plotly.PlotHoverEvent) => void {\n  return (eventData) => {\n    const pt = eventData.points[0];\n    if (pt && pt.curveNumber < processedSeriesLength) {\n      const targetIdx = pt.curveNumber;\n      if (thickenedSeriesRef.current !== targetIdx) {\n        // Hover events can only fire once the plot is drawn, so the\n        // lazily-loaded Plotly module is guaranteed to be available here.\n        if (thickenedSeriesRef.current !== null) {\n          getLoadedPlotly().restyle(domElement, { \"line.width\": CHROMATOGRAM_TRACE.BASE_LINE_WIDTH } as Plotly.Data, [thickenedSeriesRef.current]);\n        }\n        getLoadedPlotly().restyle(domElement, { \"line.width\": CHROMATOGRAM_TRACE.BASE_LINE_WIDTH * hoverLineWidthMultiplier } as Plotly.Data, [targetIdx]);\n        thickenedSeriesRef.current = targetIdx;\n      }\n    }\n    const peakPoint = eventData.points.find((p) => p.customdata != null);\n    if (peakPoint) {\n      onPeakHoverRef.current?.(peakPoint.customdata as unknown as PeakSelectEvent);\n    }\n  };\n}\n\nexport function createClickHandler(\n  onPeakClickRef: MutableRef<((event: PeakSelectEvent) => void) | undefined>\n): (eventData: Plotly.PlotMouseEvent) => void {\n  return (eventData) => {\n    if (!onPeakClickRef.current) return;\n    const peakPoint = eventData.points.find((p) => p.customdata != null);\n    if (!peakPoint) return;\n    onPeakClickRef.current(peakPoint.customdata as unknown as PeakSelectEvent);\n  };\n}\n\nexport function createUnhoverHandler(\n  domElement: HTMLElement,\n  thickenedSeriesRef: MutableRef<number | null>,\n  onPeakHoverRef: MutableRef<((event: PeakSelectEvent | null) => void) | undefined>\n): () => void {\n  return () => {\n    onPeakHoverRef.current?.(null);\n    if (thickenedSeriesRef.current !== null) {\n      // Unhover events can only fire once the plot is drawn, so the\n      // lazily-loaded Plotly module is guaranteed to be available here.\n      getLoadedPlotly().restyle(domElement, { \"line.width\": CHROMATOGRAM_TRACE.BASE_LINE_WIDTH } as Plotly.Data, [thickenedSeriesRef.current]);\n      thickenedSeriesRef.current = null;\n    }\n  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