@teselagen/sequence-utils 0.3.30 → 0.3.32-beta.1

package/calculateNebTa.d.ts

@@ -1,4 +1 @@
-export default function calculateNebTa(sequences: any, primerConc: any, { monovalentCationConc, polymerase }?: {
-    monovalentCationConc: any;
-    polymerase: any;
-}): any;
+export default function calculateNebTa(sequences: any, primerConc: any, { monovalentCationConc, polymerase }?: {}): any;

package/calculateTm.d.ts

@@ -1,8 +1,2 @@
-declare function _default(_sequence: any, { type, A, R, primerConc, monovalentCationConc }?: {
-    type: any;
-    A: any;
-    R: any;
-    primerConc: any;
-    monovalentCationConc: any;
-}): number;
+declare function _default(_sequence: any, { type, A, R, primerConc, monovalentCationConc }?: {}): number;
 export default _default;

package/diffUtils.d.ts

@@ -1,7 +1,7 @@
 export function getDiffFromSeqs(oldData: any, newData: any, { ignoreKeys }?: {
-    ignoreKeys?: any[] | undefined;
+    ignoreKeys?: never[] | undefined;
 }): any;
 export function patchSeqWithDiff(oldData: any, diff: any, { ignoreKeys }?: {
-    ignoreKeys?: any[] | undefined;
+    ignoreKeys?: never[] | undefined;
 }): any;
 export function reverseSeqDiff(diff: any): any;

package/featureTypesAndColors.d.ts

@@ -3,10 +3,6 @@ export const genbankFeatureTypes: {
     name: string;
     color: string;
 }[];
-export function getFeatureToColorMap({ includeHidden }?: {
-    includeHidden: any;
-}): {};
-export function getFeatureTypes({ includeHidden }?: {
-    includeHidden: any;
-}): any[];
+export function getFeatureToColorMap({ includeHidden }?: {}): {};
+export function getFeatureTypes({ includeHidden }?: {}): any[];
 export function getMergedFeatureMap(): any;

package/filterSequenceString.d.ts

@@ -1,23 +1,8 @@
 export default function filterSequenceString(sequenceString?: string, { additionalValidChars, isOligo, name, isProtein, isRna, isMixedRnaAndDna }?: {
     additionalValidChars?: string | undefined;
-    isOligo: any;
-    name: any;
-    isProtein: any;
-    isRna: any;
-    isMixedRnaAndDna: any;
 }): (string | string[])[];
-export function getAcceptedChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {
-    isOligo: any;
-    isProtein: any;
-    isRna: any;
-    isMixedRnaAndDna: any;
-}): string;
-export function getReplaceChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {
-    isOligo: any;
-    isProtein: any;
-    isRna: any;
-    isMixedRnaAndDna: any;
-}): {
+export function getAcceptedChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {}): string;
+export function getReplaceChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {}): {
     t?: undefined;
 } | {
     t: string;

package/findApproxMatches.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Find approximate matches of a search sequence within a target sequence
+ *
+ * @param {string} searchSeq - The sequence to search for
+ * @param {string} targetSeq - The sequence to search within
+ * @param {number} maxMismatches - Maximum number of mismatches allowed
+ * @param {boolean} circular - Whether to treat the target sequence as circular (default: false)
+ * @returns {Array} - Array of objects containing { index, match, mismatchPositions }
+ */
+export default function findApproxMatches(searchSeq: string, targetSeq: string, maxMismatches: number, circular?: boolean): any[];

package/findApproxMatches.test.d.ts

@@ -0,0 +1 @@
+export {};

package/generateSequenceData.d.ts

@@ -1,10 +1,5 @@
 export default function generateSequenceData({ isProtein, sequenceLength, numFeatures, numParts, numPrimers, numTranslations }?: {
-    isProtein: any;
     sequenceLength?: number | undefined;
-    numFeatures: any;
-    numParts: any;
-    numPrimers: any;
-    numTranslations: any;
 }): {
     circular: boolean;
     name: string;

package/getAminoAcidStringFromSequenceString.d.ts

@@ -1,3 +1 @@
-export default function getAminoAcidStringFromSequenceString(sequenceString: any, { doNotExcludeAsterisk }?: {
-    doNotExcludeAsterisk: any;
-}): string;
+export default function getAminoAcidStringFromSequenceString(sequenceString: any, { doNotExcludeAsterisk }?: {}): string;