@teselagen/sequence-utils 0.3.30 → 0.3.31

package/mapAnnotationsToRows.d.ts

@@ -1,3 +1 @@
-export default function mapAnnotationsToRows(annotations: any, sequenceLength: any, bpsPerRow: any, { splitForwardReverse }?: {
-    splitForwardReverse: any;
-}): {};
+export default function mapAnnotationsToRows(annotations: any, sequenceLength: any, bpsPerRow: any, { splitForwardReverse }?: {}): {};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/sequence-utils",
-  "version": "0.3.30",
+  "version": "0.3.31",
   "type": "module",
   "dependencies": {
     "escape-string-regexp": "5.0.0",

package/src/adjustBpsToReplaceOrInsert.test.js

@@ -1,6 +1,6 @@
 //tnr: half finished test.
 
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 
 import adjustBpsToReplaceOrInsert from "./adjustBpsToReplaceOrInsert";

package/src/cutSequenceByRestrictionEnzyme.test.js

@@ -1,6 +1,6 @@
 /* eslint-disable no-unused-expressions */
 
-import chai from "chai";
+import * as chai from "chai";
 import cutSequenceByRestrictionEnzyme from "./cutSequenceByRestrictionEnzyme.js";
 import enzymeList from "./aliasedEnzymesByName";
 

package/src/deleteSequenceDataAtRange.test.js

@@ -1,6 +1,6 @@
 //tnr: half finished test.
 
-import chai from "chai";
+import * as chai from "chai";
 
 import { getRangeLength } from "@teselagen/range-utils";
 import { cloneDeep } from "lodash-es";

package/src/diffUtils.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import assert from "assert";
 import { map } from "lodash-es";
 import tidyUpSequenceData from "./tidyUpSequenceData";

package/src/doesEnzymeChopOutsideOfRecognitionSite.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import doesEnzymeChopOutsideOfRecognitionSite from "./doesEnzymeChopOutsideOfRecognitionSite.js";
 import enzymeList from "./aliasedEnzymesByName";
 

package/src/filterSequenceString.test.js

@@ -1,5 +1,4 @@
 import filterSequenceString from "./filterSequenceString";
-import { expect } from "vitest";
 
 describe("filterSequenceString", () => {
   it("should not filter u's and should convert t's to u's from isOligo=true seqs", () => {

package/src/generateSequenceData.test.js

@@ -1,5 +1,5 @@
 import generateSequenceData from "./generateSequenceData";
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 import { map } from "lodash-es";
 

package/src/getDigestFragmentsForRestrictionEnzymes.test.js

@@ -1,5 +1,5 @@
 /* eslint-disable no-unused-expressions */
-import chai from "chai";
+import * as chai from "chai";
 import getDigestFragmentsForRestrictionEnzymes from "./getDigestFragmentsForRestrictionEnzymes.js";
 import enzymeList from "./aliasedEnzymesByName";
 

package/src/getLeftAndRightOfSequenceInRangeGivenPosition.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import cutSequenceByRestrictionEnzyme from "./cutSequenceByRestrictionEnzyme.js";
 import enzymeList from "./aliasedEnzymesByName";
 import getLeftAndRightOfSequenceInRangeGivenPosition from "./getLeftAndRightOfSequenceInRangeGivenPosition";

package/src/getPossiblePartsFromSequenceAndEnzymes.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 import getPossiblePartsFromSequenceAndEnzymes from "./getPossiblePartsFromSequenceAndEnzymes";
 import enzymeList from "./aliasedEnzymesByName";

package/src/getReverseComplementAnnotation.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 import getReverseComplementAnnotation from "./getReverseComplementAnnotation";
 chai.should();

package/src/getReverseComplementSequenceAndAnnotations.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 import getReverseComplementSequenceAndAnnotations from "./getReverseComplementSequenceAndAnnotations";
 chai.should();

package/src/getReverseComplementSequenceString.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 import getReverseComplementSequenceString from "./getReverseComplementSequenceString";
 chai.should();

package/src/getReverseSequenceString.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import getReverseSequenceString from "./getReverseSequenceString";
 chai.should();
 describe("getReverseSequenceAndAnnotations", () => {

package/src/getSequenceDataBetweenRange.test.js

@@ -1,6 +1,6 @@
 //tnr: half finished test.
 
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 
 import getSequenceDataBetweenRange from "./getSequenceDataBetweenRange";

package/src/getVirtualDigest.test.js

@@ -1,5 +1,5 @@
 import chaiSubset from "chai-subset";
-import chai from "chai";
+import * as chai from "chai";
 
 //UNDER CONSTRUCTION
 import getVirtualDigest from "./getVirtualDigest";

package/src/guessIfSequenceIsDnaAndNotProtein.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 import guessIfSequenceIsDnaAndNotProtein from "./guessIfSequenceIsDnaAndNotProtein";
 chai.should();
 describe("guessIfSequenceIsDnaAndNotProtein", () => {

package/src/insertSequenceDataAtPosition.test.js

@@ -1,6 +1,6 @@
 //tnr: half finished test.
 
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 
 import tidyUpSequenceData from "./tidyUpSequenceData";

package/src/insertSequenceDataAtPositionOrRange.test.js

@@ -1,6 +1,6 @@
 //tnr: half finished test.
 
-import chai from "chai";
+import * as chai from "chai";
 
 import { getRangeLength } from "@teselagen/range-utils";
 import assert from "assert";

package/src/mapAnnotationsToRows.test.js

@@ -1,4 +1,4 @@
-import chai from "chai";
+import * as chai from "chai";
 
 import { expect } from "chai";
 import chaiSubset from "chai-subset";

package/src/tidyUpSequenceData.test.js

@@ -1,6 +1,6 @@
 import assert from "assert";
 import tidyUpSequenceData from "./tidyUpSequenceData";
-import chai from "chai";
+import * as chai from "chai";
 import chaiSubset from "chai-subset";
 chai.use(chaiSubset);
 chai.should();

package/tidyUpAnnotation.d.ts

@@ -4,7 +4,7 @@ export default function tidyUpAnnotation(_annotation: any, { sequenceData, conve
     annotationType: any;
     provideNewIdsForAnnotations: any;
     doNotProvideIdsForAnnotations: any;
-    messages?: any[] | undefined;
+    messages?: never[] | undefined;
     mutative: any;
     allowNonStandardGenbankTypes: any;
     featureTypes: any;