@teselagen/sequence-utils 0.3.30 → 0.3.31

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Files changed (34) hide show
  1. package/calculateNebTa.d.ts +1 -4
  2. package/calculateTm.d.ts +1 -7
  3. package/diffUtils.d.ts +2 -2
  4. package/featureTypesAndColors.d.ts +2 -6
  5. package/filterSequenceString.d.ts +2 -17
  6. package/generateSequenceData.d.ts +0 -5
  7. package/getAminoAcidStringFromSequenceString.d.ts +1 -3
  8. package/index.cjs +3967 -3915
  9. package/index.js +3967 -3915
  10. package/index.umd.cjs +3967 -3915
  11. package/mapAnnotationsToRows.d.ts +1 -3
  12. package/package.json +1 -1
  13. package/src/adjustBpsToReplaceOrInsert.test.js +1 -1
  14. package/src/cutSequenceByRestrictionEnzyme.test.js +1 -1
  15. package/src/deleteSequenceDataAtRange.test.js +1 -1
  16. package/src/diffUtils.test.js +1 -1
  17. package/src/doesEnzymeChopOutsideOfRecognitionSite.test.js +1 -1
  18. package/src/filterSequenceString.test.js +0 -1
  19. package/src/generateSequenceData.test.js +1 -1
  20. package/src/getDigestFragmentsForRestrictionEnzymes.test.js +1 -1
  21. package/src/getLeftAndRightOfSequenceInRangeGivenPosition.test.js +1 -1
  22. package/src/getPossiblePartsFromSequenceAndEnzymes.test.js +1 -1
  23. package/src/getReverseComplementAnnotation.test.js +1 -1
  24. package/src/getReverseComplementSequenceAndAnnotations.test.js +1 -1
  25. package/src/getReverseComplementSequenceString.test.js +1 -1
  26. package/src/getReverseSequenceString.test.js +1 -1
  27. package/src/getSequenceDataBetweenRange.test.js +1 -1
  28. package/src/getVirtualDigest.test.js +1 -1
  29. package/src/guessIfSequenceIsDnaAndNotProtein.test.js +1 -1
  30. package/src/insertSequenceDataAtPosition.test.js +1 -1
  31. package/src/insertSequenceDataAtPositionOrRange.test.js +1 -1
  32. package/src/mapAnnotationsToRows.test.js +1 -1
  33. package/src/tidyUpSequenceData.test.js +1 -1
  34. package/tidyUpAnnotation.d.ts +1 -1
package/calculateNebTa.d.ts CHANGED
@@ -1,4 +1 @@
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- export default function calculateNebTa(sequences: any, primerConc: any, { monovalentCationConc, polymerase }?: {
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- monovalentCationConc: any;
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- polymerase: any;
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- }): any;
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+ export default function calculateNebTa(sequences: any, primerConc: any, { monovalentCationConc, polymerase }?: {}): any;
package/calculateTm.d.ts CHANGED
@@ -1,8 +1,2 @@
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- declare function _default(_sequence: any, { type, A, R, primerConc, monovalentCationConc }?: {
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- type: any;
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- A: any;
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- R: any;
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- primerConc: any;
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- monovalentCationConc: any;
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- }): number;
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+ declare function _default(_sequence: any, { type, A, R, primerConc, monovalentCationConc }?: {}): number;
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  export default _default;
package/diffUtils.d.ts CHANGED
@@ -1,7 +1,7 @@
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  export function getDiffFromSeqs(oldData: any, newData: any, { ignoreKeys }?: {
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- ignoreKeys?: any[] | undefined;
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+ ignoreKeys?: never[] | undefined;
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  }): any;
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  export function patchSeqWithDiff(oldData: any, diff: any, { ignoreKeys }?: {
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- ignoreKeys?: any[] | undefined;
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+ ignoreKeys?: never[] | undefined;
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  }): any;
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  export function reverseSeqDiff(diff: any): any;
package/featureTypesAndColors.d.ts CHANGED
@@ -3,10 +3,6 @@ export const genbankFeatureTypes: {
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  name: string;
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  color: string;
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  }[];
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- export function getFeatureToColorMap({ includeHidden }?: {
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- includeHidden: any;
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- }): {};
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- export function getFeatureTypes({ includeHidden }?: {
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- includeHidden: any;
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- }): any[];
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+ export function getFeatureToColorMap({ includeHidden }?: {}): {};
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+ export function getFeatureTypes({ includeHidden }?: {}): any[];
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  export function getMergedFeatureMap(): any;
package/filterSequenceString.d.ts CHANGED
@@ -1,23 +1,8 @@
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  export default function filterSequenceString(sequenceString?: string, { additionalValidChars, isOligo, name, isProtein, isRna, isMixedRnaAndDna }?: {
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  additionalValidChars?: string | undefined;
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- isOligo: any;
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- name: any;
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- isProtein: any;
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- isRna: any;
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- isMixedRnaAndDna: any;
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3
  }): (string | string[])[];
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- export function getAcceptedChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {
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- isOligo: any;
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- isProtein: any;
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- isRna: any;
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- isMixedRnaAndDna: any;
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- }): string;
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- export function getReplaceChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {
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- isOligo: any;
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- isProtein: any;
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- isRna: any;
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- isMixedRnaAndDna: any;
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- }): {
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+ export function getAcceptedChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {}): string;
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+ export function getReplaceChars({ isOligo, isProtein, isRna, isMixedRnaAndDna }?: {}): {
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  t?: undefined;
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  } | {
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  t: string;
package/generateSequenceData.d.ts CHANGED
@@ -1,10 +1,5 @@
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  export default function generateSequenceData({ isProtein, sequenceLength, numFeatures, numParts, numPrimers, numTranslations }?: {
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- isProtein: any;
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  sequenceLength?: number | undefined;
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- numFeatures: any;
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- numParts: any;
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- numPrimers: any;
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- numTranslations: any;
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  }): {
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  circular: boolean;
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  name: string;
package/getAminoAcidStringFromSequenceString.d.ts CHANGED
@@ -1,3 +1 @@
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- export default function getAminoAcidStringFromSequenceString(sequenceString: any, { doNotExcludeAsterisk }?: {
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- doNotExcludeAsterisk: any;
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- }): string;
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+ export default function getAminoAcidStringFromSequenceString(sequenceString: any, { doNotExcludeAsterisk }?: {}): string;