@teselagen/sequence-utils 0.1.11 → 0.1.14

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Files changed (58) hide show
  1. package/addGapsToSeqReads.test.d.ts +1 -0
  2. package/adjustBpsToReplaceOrInsert.test.d.ts +1 -0
  3. package/aminoAcidToDnaRna.test.d.ts +1 -0
  4. package/annotateSingleSeq.test.d.ts +1 -0
  5. package/autoAnnotate.test.d.ts +1 -0
  6. package/bioData.d.ts +192 -192
  7. package/calculateNebTa.test.d.ts +1 -0
  8. package/calculateNebTm.test.d.ts +1 -0
  9. package/calculatePercentGC.test.d.ts +1 -0
  10. package/calculateTm.test.d.ts +1 -0
  11. package/computeDigestFragments.test.d.ts +1 -0
  12. package/condensePairwiseAlignmentDifferences.test.d.ts +1 -0
  13. package/convertAACaretPositionOrRangeToDna.test.d.ts +1 -0
  14. package/convertDnaCaretPositionOrRangeToAA.test.d.ts +1 -0
  15. package/cutSequenceByRestrictionEnzyme.test.d.ts +1 -0
  16. package/deleteSequenceDataAtRange.test.d.ts +1 -0
  17. package/diffUtils.test.d.ts +1 -0
  18. package/doesEnzymeChopOutsideOfRecognitionSite.test.d.ts +1 -0
  19. package/featureTypesAndColors.test.d.ts +1 -0
  20. package/filterAminoAcidSequenceString.test.d.ts +1 -0
  21. package/filterSequenceString.test.d.ts +1 -0
  22. package/findNearestRangeOfSequenceOverlapToPosition.test.d.ts +1 -0
  23. package/findSequenceMatches.test.d.ts +1 -0
  24. package/generateSequenceData.test.d.ts +1 -0
  25. package/getAllInsertionsInSeqReads.test.d.ts +1 -0
  26. package/getAminoAcidDataForEachBaseOfDna.test.d.ts +1 -0
  27. package/getAminoAcidStringFromSequenceString.test.d.ts +1 -0
  28. package/getDigestFragmentsForRestrictionEnzymes.test.d.ts +1 -0
  29. package/getInsertBetweenVals.test.d.ts +1 -0
  30. package/getLeftAndRightOfSequenceInRangeGivenPosition.test.d.ts +1 -0
  31. package/getMassofAaString.test.d.ts +1 -0
  32. package/getOrfsFromSequence.test.d.ts +1 -0
  33. package/getOverlapBetweenTwoSequences.d.ts +1 -1
  34. package/getOverlapBetweenTwoSequences.test.d.ts +1 -0
  35. package/getPossiblePartsFromSequenceAndEnzymes.test.d.ts +1 -0
  36. package/getReverseAminoAcidStringFromSequenceString.test.d.ts +1 -0
  37. package/getReverseComplementAnnotation.test.d.ts +1 -0
  38. package/getReverseComplementSequenceAndAnnotations.test.d.ts +1 -0
  39. package/getReverseComplementSequenceString.test.d.ts +1 -0
  40. package/getReverseSequenceString.test.d.ts +1 -0
  41. package/getSequenceDataBetweenRange.test.d.ts +1 -0
  42. package/getVirtualDigest.test.d.ts +1 -0
  43. package/guessIfSequenceIsDnaAndNotProtein.test.d.ts +1 -0
  44. package/index.d.ts +7 -7
  45. package/index.js +774 -696
  46. package/index.mjs +774 -696
  47. package/index.test.d.ts +1 -0
  48. package/index.umd.js +775 -697
  49. package/insertGapsIntoRefSeq.test.d.ts +1 -0
  50. package/insertSequenceDataAtPosition.test.d.ts +1 -0
  51. package/insertSequenceDataAtPositionOrRange.test.d.ts +1 -0
  52. package/mapAnnotationsToRows.test.d.ts +1 -0
  53. package/package.json +3 -3
  54. package/prepareCircularViewData.test.d.ts +1 -0
  55. package/prepareRowData.test.d.ts +1 -0
  56. package/rotateBpsToPosition.test.d.ts +1 -0
  57. package/rotateSequenceDataToPosition.test.d.ts +1 -0
  58. package/tidyUpSequenceData.test.d.ts +1 -0
package/insertGapsIntoRefSeq.test.d.ts ADDED
@@ -0,0 +1 @@
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+ export {};
package/insertSequenceDataAtPosition.test.d.ts ADDED
@@ -0,0 +1 @@
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+ export {};
package/insertSequenceDataAtPositionOrRange.test.d.ts ADDED
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+ export {};
package/mapAnnotationsToRows.test.d.ts ADDED
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+ export {};
package/package.json CHANGED
@@ -1,10 +1,10 @@
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  {
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  "name": "@teselagen/sequence-utils",
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- "version": "0.1.11",
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+ "version": "0.1.14",
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  "type": "commonjs",
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  "dependencies": {
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- "bson-objectid": "^1.1.1",
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- "escape-string-regexp": "^1.0.5",
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+ "bson-objectid": "^2.0.4",
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+ "escape-string-regexp": "^5.0.0",
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  "jsondiffpatch-rc": "0.4.2",
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  "string-splice": "^1.3.0"
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  }
package/prepareCircularViewData.test.d.ts ADDED
@@ -0,0 +1 @@
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+ export {};
package/prepareRowData.test.d.ts ADDED
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+ export {};
package/rotateBpsToPosition.test.d.ts ADDED
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+ export {};
package/rotateSequenceDataToPosition.test.d.ts ADDED
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+ export {};
package/tidyUpSequenceData.test.d.ts ADDED
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+ export {};