@teselagen/sequence-utils 0.1.11 → 0.1.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. package/addGapsToSeqReads.test.d.ts +1 -0
  2. package/adjustBpsToReplaceOrInsert.test.d.ts +1 -0
  3. package/aminoAcidToDnaRna.test.d.ts +1 -0
  4. package/annotateSingleSeq.test.d.ts +1 -0
  5. package/autoAnnotate.test.d.ts +1 -0
  6. package/bioData.d.ts +192 -192
  7. package/calculateNebTa.test.d.ts +1 -0
  8. package/calculateNebTm.test.d.ts +1 -0
  9. package/calculatePercentGC.test.d.ts +1 -0
  10. package/calculateTm.test.d.ts +1 -0
  11. package/computeDigestFragments.test.d.ts +1 -0
  12. package/condensePairwiseAlignmentDifferences.test.d.ts +1 -0
  13. package/convertAACaretPositionOrRangeToDna.test.d.ts +1 -0
  14. package/convertDnaCaretPositionOrRangeToAA.test.d.ts +1 -0
  15. package/cutSequenceByRestrictionEnzyme.test.d.ts +1 -0
  16. package/deleteSequenceDataAtRange.test.d.ts +1 -0
  17. package/diffUtils.test.d.ts +1 -0
  18. package/doesEnzymeChopOutsideOfRecognitionSite.test.d.ts +1 -0
  19. package/featureTypesAndColors.test.d.ts +1 -0
  20. package/filterAminoAcidSequenceString.test.d.ts +1 -0
  21. package/filterSequenceString.test.d.ts +1 -0
  22. package/findNearestRangeOfSequenceOverlapToPosition.test.d.ts +1 -0
  23. package/findSequenceMatches.test.d.ts +1 -0
  24. package/generateSequenceData.test.d.ts +1 -0
  25. package/getAllInsertionsInSeqReads.test.d.ts +1 -0
  26. package/getAminoAcidDataForEachBaseOfDna.test.d.ts +1 -0
  27. package/getAminoAcidStringFromSequenceString.test.d.ts +1 -0
  28. package/getDigestFragmentsForRestrictionEnzymes.test.d.ts +1 -0
  29. package/getInsertBetweenVals.test.d.ts +1 -0
  30. package/getLeftAndRightOfSequenceInRangeGivenPosition.test.d.ts +1 -0
  31. package/getMassofAaString.test.d.ts +1 -0
  32. package/getOrfsFromSequence.test.d.ts +1 -0
  33. package/getOverlapBetweenTwoSequences.d.ts +1 -1
  34. package/getOverlapBetweenTwoSequences.test.d.ts +1 -0
  35. package/getPossiblePartsFromSequenceAndEnzymes.test.d.ts +1 -0
  36. package/getReverseAminoAcidStringFromSequenceString.test.d.ts +1 -0
  37. package/getReverseComplementAnnotation.test.d.ts +1 -0
  38. package/getReverseComplementSequenceAndAnnotations.test.d.ts +1 -0
  39. package/getReverseComplementSequenceString.test.d.ts +1 -0
  40. package/getReverseSequenceString.test.d.ts +1 -0
  41. package/getSequenceDataBetweenRange.test.d.ts +1 -0
  42. package/getVirtualDigest.test.d.ts +1 -0
  43. package/guessIfSequenceIsDnaAndNotProtein.test.d.ts +1 -0
  44. package/index.d.ts +7 -7
  45. package/index.js +774 -696
  46. package/index.mjs +774 -696
  47. package/index.test.d.ts +1 -0
  48. package/index.umd.js +775 -697
  49. package/insertGapsIntoRefSeq.test.d.ts +1 -0
  50. package/insertSequenceDataAtPosition.test.d.ts +1 -0
  51. package/insertSequenceDataAtPositionOrRange.test.d.ts +1 -0
  52. package/mapAnnotationsToRows.test.d.ts +1 -0
  53. package/package.json +3 -3
  54. package/prepareCircularViewData.test.d.ts +1 -0
  55. package/prepareRowData.test.d.ts +1 -0
  56. package/rotateBpsToPosition.test.d.ts +1 -0
  57. package/rotateSequenceDataToPosition.test.d.ts +1 -0
  58. package/tidyUpSequenceData.test.d.ts +1 -0
package/index.mjs CHANGED
@@ -392,18 +392,18 @@ lodash.exports;
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  }
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  __name(apply, "apply");
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  function arrayAggregator(array, setter, iteratee, accumulator) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- var value = array[index2];
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ var value = array[index];
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  setter(accumulator, value, iteratee(value), array);
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  }
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  return accumulator;
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  }
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  __name(arrayAggregator, "arrayAggregator");
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  function arrayEach(array, iteratee) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (iteratee(array[index2], index2, array) === false) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (iteratee(array[index], index, array) === false) {
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  break;
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  }
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  }
@@ -421,9 +421,9 @@ lodash.exports;
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  }
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  __name(arrayEachRight, "arrayEachRight");
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  function arrayEvery(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (!predicate(array[index2], index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (!predicate(array[index], index, array)) {
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  return false;
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  }
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  }
@@ -431,10 +431,10 @@ lodash.exports;
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  }
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  __name(arrayEvery, "arrayEvery");
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  function arrayFilter(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length, resIndex = 0, result = [];
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- while (++index2 < length) {
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- var value = array[index2];
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- if (predicate(value, index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length, resIndex = 0, result = [];
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+ while (++index < length) {
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+ var value = array[index];
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+ if (predicate(value, index, array)) {
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  result[resIndex++] = value;
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  }
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  }
@@ -447,9 +447,9 @@ lodash.exports;
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  }
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  __name(arrayIncludes, "arrayIncludes");
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  function arrayIncludesWith(array, value, comparator) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (comparator(value, array[index2])) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (comparator(value, array[index])) {
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  return true;
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  }
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  }
@@ -457,28 +457,28 @@ lodash.exports;
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  }
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  __name(arrayIncludesWith, "arrayIncludesWith");
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  function arrayMap(array, iteratee) {
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- var index2 = -1, length = array == null ? 0 : array.length, result = Array(length);
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- while (++index2 < length) {
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- result[index2] = iteratee(array[index2], index2, array);
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+ var index = -1, length = array == null ? 0 : array.length, result = Array(length);
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+ while (++index < length) {
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+ result[index] = iteratee(array[index], index, array);
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  }
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  return result;
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  }
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  __name(arrayMap, "arrayMap");
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  function arrayPush(array, values) {
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- var index2 = -1, length = values.length, offset = array.length;
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- while (++index2 < length) {
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- array[offset + index2] = values[index2];
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+ var index = -1, length = values.length, offset = array.length;
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+ while (++index < length) {
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+ array[offset + index] = values[index];
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  }
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  return array;
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  }
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  __name(arrayPush, "arrayPush");
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  function arrayReduce(array, iteratee, accumulator, initAccum) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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+ var index = -1, length = array == null ? 0 : array.length;
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  if (initAccum && length) {
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- accumulator = array[++index2];
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+ accumulator = array[++index];
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  }
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- while (++index2 < length) {
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- accumulator = iteratee(accumulator, array[index2], index2, array);
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+ while (++index < length) {
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+ accumulator = iteratee(accumulator, array[index], index, array);
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  }
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  return accumulator;
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  }
@@ -495,9 +495,9 @@ lodash.exports;
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  }
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  __name(arrayReduceRight, "arrayReduceRight");
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  function arraySome(array, predicate) {
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- var index2 = -1, length = array == null ? 0 : array.length;
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- while (++index2 < length) {
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- if (predicate(array[index2], index2, array)) {
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+ var index = -1, length = array == null ? 0 : array.length;
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+ while (++index < length) {
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+ if (predicate(array[index], index, array)) {
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  return true;
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  }
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  }
@@ -525,10 +525,10 @@ lodash.exports;
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  }
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  __name(baseFindKey, "baseFindKey");
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  function baseFindIndex(array, predicate, fromIndex, fromRight) {
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- var length = array.length, index2 = fromIndex + (fromRight ? 1 : -1);
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- while (fromRight ? index2-- : ++index2 < length) {
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- if (predicate(array[index2], index2, array)) {
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- return index2;
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+ var length = array.length, index = fromIndex + (fromRight ? 1 : -1);
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+ while (fromRight ? index-- : ++index < length) {
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+ if (predicate(array[index], index, array)) {
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+ return index;
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  }
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  }
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  return -1;
@@ -539,10 +539,10 @@ lodash.exports;
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  }
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  __name(baseIndexOf, "baseIndexOf");
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  function baseIndexOfWith(array, value, fromIndex, comparator) {
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- var index2 = fromIndex - 1, length = array.length;
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- while (++index2 < length) {
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- if (comparator(array[index2], value)) {
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- return index2;
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+ var index = fromIndex - 1, length = array.length;
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+ while (++index < length) {
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+ if (comparator(array[index], value)) {
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+ return index;
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  }
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  }
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  return -1;
@@ -570,8 +570,8 @@ lodash.exports;
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  }
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  __name(basePropertyOf, "basePropertyOf");
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  function baseReduce(collection, iteratee, accumulator, initAccum, eachFunc) {
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- eachFunc(collection, function(value, index2, collection2) {
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- accumulator = initAccum ? (initAccum = false, value) : iteratee(accumulator, value, index2, collection2);
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+ eachFunc(collection, function(value, index, collection2) {
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+ accumulator = initAccum ? (initAccum = false, value) : iteratee(accumulator, value, index, collection2);
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  });
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  return accumulator;
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  }
@@ -586,9 +586,9 @@ lodash.exports;
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  }
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  __name(baseSortBy, "baseSortBy");
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  function baseSum(array, iteratee) {
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- var result, index2 = -1, length = array.length;
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- while (++index2 < length) {
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- var current = iteratee(array[index2]);
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+ var result, index = -1, length = array.length;
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+ while (++index < length) {
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+ var current = iteratee(array[index]);
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  if (current !== undefined$1) {
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  result = result === undefined$1 ? current : result + current;
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  }
@@ -597,9 +597,9 @@ lodash.exports;
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  }
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  __name(baseSum, "baseSum");
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  function baseTimes(n, iteratee) {
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- var index2 = -1, result = Array(n);
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- while (++index2 < n) {
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- result[index2] = iteratee(index2);
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+ var index = -1, result = Array(n);
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+ while (++index < n) {
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+ result[index] = iteratee(index);
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  }
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  return result;
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  }
@@ -631,17 +631,17 @@ lodash.exports;
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  }
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  __name(cacheHas, "cacheHas");
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  function charsStartIndex(strSymbols, chrSymbols) {
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- var index2 = -1, length = strSymbols.length;
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- while (++index2 < length && baseIndexOf(chrSymbols, strSymbols[index2], 0) > -1) {
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+ var index = -1, length = strSymbols.length;
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+ while (++index < length && baseIndexOf(chrSymbols, strSymbols[index], 0) > -1) {
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  }
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- return index2;
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+ return index;
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  }
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  __name(charsStartIndex, "charsStartIndex");
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  function charsEndIndex(strSymbols, chrSymbols) {
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- var index2 = strSymbols.length;
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- while (index2-- && baseIndexOf(chrSymbols, strSymbols[index2], 0) > -1) {
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+ var index = strSymbols.length;
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+ while (index-- && baseIndexOf(chrSymbols, strSymbols[index], 0) > -1) {
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  }
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- return index2;
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+ return index;
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  }
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  __name(charsEndIndex, "charsEndIndex");
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  function countHolders(array, placeholder) {
@@ -681,9 +681,9 @@ lodash.exports;
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  }
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  __name(iteratorToArray, "iteratorToArray");
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  function mapToArray(map) {
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- var index2 = -1, result = Array(map.size);
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+ var index = -1, result = Array(map.size);
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  map.forEach(function(value, key) {
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- result[++index2] = [key, value];
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+ result[++index] = [key, value];
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  });
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  return result;
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  }
@@ -695,51 +695,51 @@ lodash.exports;
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  }
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  __name(overArg, "overArg");
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  function replaceHolders(array, placeholder) {
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- var index2 = -1, length = array.length, resIndex = 0, result = [];
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- while (++index2 < length) {
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- var value = array[index2];
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+ var index = -1, length = array.length, resIndex = 0, result = [];
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+ while (++index < length) {
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+ var value = array[index];
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  if (value === placeholder || value === PLACEHOLDER) {
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- array[index2] = PLACEHOLDER;
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- result[resIndex++] = index2;
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+ array[index] = PLACEHOLDER;
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+ result[resIndex++] = index;
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  }
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  }
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  return result;
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  }
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  __name(replaceHolders, "replaceHolders");
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  function setToArray(set) {
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+ var index = -1, result = Array(set.size);
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  set.forEach(function(value) {
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- result[++index2] = value;
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+ result[++index] = value;
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  });
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  return result;
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  }
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  __name(setToArray, "setToArray");
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  function setToPairs(set) {
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- var index2 = -1, result = Array(set.size);
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+ var index = -1, result = Array(set.size);
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  set.forEach(function(value) {
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- result[++index2] = [value, value];
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+ result[++index] = [value, value];
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  return result;
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  }
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  __name(setToPairs, "setToPairs");
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  function strictIndexOf(array, value, fromIndex) {
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- var index2 = fromIndex - 1, length = array.length;
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- while (++index2 < length) {
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- if (array[index2] === value) {
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- return index2;
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+ var index = fromIndex - 1, length = array.length;
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+ while (++index < length) {
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+ if (array[index] === value) {
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+ return index;
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  }
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  }
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  return -1;
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  }
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  __name(strictIndexOf, "strictIndexOf");
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  function strictLastIndexOf(array, value, fromIndex) {
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- var index2 = fromIndex + 1;
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- while (index2--) {
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- if (array[index2] === value) {
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- return index2;
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+ var index = fromIndex + 1;
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+ while (index--) {
738
+ if (array[index] === value) {
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+ return index;
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- return index2;
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+ return index;
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  }
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  __name(strictLastIndexOf, "strictLastIndexOf");
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  function stringSize(string) {
@@ -751,10 +751,10 @@ lodash.exports;
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  }
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  __name(stringToArray, "stringToArray");
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  function trimmedEndIndex(string) {
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- var index2 = string.length;
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- while (index2-- && reWhitespace.test(string.charAt(index2))) {
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+ var index = string.length;
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+ while (index-- && reWhitespace.test(string.charAt(index))) {
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- return index2;
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+ return index;
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  }
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  __name(trimmedEndIndex, "trimmedEndIndex");
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  var unescapeHtmlChar = basePropertyOf(htmlUnescapes);
@@ -931,15 +931,15 @@ lodash.exports;
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  }
932
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  __name(lazyReverse, "lazyReverse");
933
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  function lazyValue() {
934
- var array = this.__wrapped__.value(), dir = this.__dir__, isArr = isArray2(array), isRight = dir < 0, arrLength = isArr ? array.length : 0, view = getView(0, arrLength, this.__views__), start = view.start, end = view.end, length = end - start, index2 = isRight ? end : start - 1, iteratees = this.__iteratees__, iterLength = iteratees.length, resIndex = 0, takeCount = nativeMin(length, this.__takeCount__);
934
+ var array = this.__wrapped__.value(), dir = this.__dir__, isArr = isArray2(array), isRight = dir < 0, arrLength = isArr ? array.length : 0, view = getView(0, arrLength, this.__views__), start = view.start, end = view.end, length = end - start, index = isRight ? end : start - 1, iteratees = this.__iteratees__, iterLength = iteratees.length, resIndex = 0, takeCount = nativeMin(length, this.__takeCount__);
935
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  if (!isArr || !isRight && arrLength == length && takeCount == length) {
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  return baseWrapperValue(array, this.__actions__);
937
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  }
938
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  var result2 = [];
939
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  outer:
940
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  while (length-- && resIndex < takeCount) {
941
- index2 += dir;
942
- var iterIndex = -1, value = array[index2];
941
+ index += dir;
942
+ var iterIndex = -1, value = array[index];
943
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  while (++iterIndex < iterLength) {
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  var data = iteratees[iterIndex], iteratee2 = data.iteratee, type = data.type, computed = iteratee2(value);
945
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  if (type == LAZY_MAP_FLAG) {
@@ -960,10 +960,10 @@ lodash.exports;
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  LazyWrapper.prototype = baseCreate(baseLodash.prototype);
961
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  LazyWrapper.prototype.constructor = LazyWrapper;
962
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  function Hash(entries) {
963
- var index2 = -1, length = entries == null ? 0 : entries.length;
963
+ var index = -1, length = entries == null ? 0 : entries.length;
964
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  this.clear();
965
- while (++index2 < length) {
966
- var entry = entries[index2];
965
+ while (++index < length) {
966
+ var entry = entries[index];
967
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  this.set(entry[0], entry[1]);
968
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969
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@@ -1006,10 +1006,10 @@ lodash.exports;
1006
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  Hash.prototype.has = hashHas;
1007
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  Hash.prototype.set = hashSet;
1008
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  function ListCache(entries) {
1009
- var index2 = -1, length = entries == null ? 0 : entries.length;
1009
+ var index = -1, length = entries == null ? 0 : entries.length;
1010
1010
  this.clear();
1011
- while (++index2 < length) {
1012
- var entry = entries[index2];
1011
+ while (++index < length) {
1012
+ var entry = entries[index];
1013
1013
  this.set(entry[0], entry[1]);
1014
1014
  }
1015
1015
  }
@@ -1020,23 +1020,23 @@ lodash.exports;
1020
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  }
1021
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  __name(listCacheClear, "listCacheClear");
1022
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  function listCacheDelete(key) {
1023
- var data = this.__data__, index2 = assocIndexOf(data, key);
1024
- if (index2 < 0) {
1023
+ var data = this.__data__, index = assocIndexOf(data, key);
1024
+ if (index < 0) {
1025
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  return false;
1026
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  }
1027
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  var lastIndex = data.length - 1;
1028
- if (index2 == lastIndex) {
1028
+ if (index == lastIndex) {
1029
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  data.pop();
1030
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  } else {
1031
- splice.call(data, index2, 1);
1031
+ splice.call(data, index, 1);
1032
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  }
1033
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  --this.size;
1034
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  return true;
1035
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  }
1036
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  __name(listCacheDelete, "listCacheDelete");
1037
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  function listCacheGet(key) {
1038
- var data = this.__data__, index2 = assocIndexOf(data, key);
1039
- return index2 < 0 ? undefined$1 : data[index2][1];
1038
+ var data = this.__data__, index = assocIndexOf(data, key);
1039
+ return index < 0 ? undefined$1 : data[index][1];
1040
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  }
1041
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  __name(listCacheGet, "listCacheGet");
1042
1042
  function listCacheHas(key) {
@@ -1044,12 +1044,12 @@ lodash.exports;
1044
1044
  }
1045
1045
  __name(listCacheHas, "listCacheHas");
1046
1046
  function listCacheSet(key, value) {
1047
- var data = this.__data__, index2 = assocIndexOf(data, key);
1048
- if (index2 < 0) {
1047
+ var data = this.__data__, index = assocIndexOf(data, key);
1048
+ if (index < 0) {
1049
1049
  ++this.size;
1050
1050
  data.push([key, value]);
1051
1051
  } else {
1052
- data[index2][1] = value;
1052
+ data[index][1] = value;
1053
1053
  }
1054
1054
  return this;
1055
1055
  }
@@ -1060,10 +1060,10 @@ lodash.exports;
1060
1060
  ListCache.prototype.has = listCacheHas;
1061
1061
  ListCache.prototype.set = listCacheSet;
1062
1062
  function MapCache(entries) {
1063
- var index2 = -1, length = entries == null ? 0 : entries.length;
1063
+ var index = -1, length = entries == null ? 0 : entries.length;
1064
1064
  this.clear();
1065
- while (++index2 < length) {
1066
- var entry = entries[index2];
1065
+ while (++index < length) {
1066
+ var entry = entries[index];
1067
1067
  this.set(entry[0], entry[1]);
1068
1068
  }
1069
1069
  }
@@ -1104,10 +1104,10 @@ lodash.exports;
1104
1104
  MapCache.prototype.has = mapCacheHas;
1105
1105
  MapCache.prototype.set = mapCacheSet;
1106
1106
  function SetCache(values2) {
1107
- var index2 = -1, length = values2 == null ? 0 : values2.length;
1107
+ var index = -1, length = values2 == null ? 0 : values2.length;
1108
1108
  this.__data__ = new MapCache();
1109
- while (++index2 < length) {
1110
- this.add(values2[index2]);
1109
+ while (++index < length) {
1110
+ this.add(values2[index]);
1111
1111
  }
1112
1112
  }
1113
1113
  __name(SetCache, "SetCache");
@@ -1168,7 +1168,7 @@ lodash.exports;
1168
1168
  Stack.prototype.has = stackHas;
1169
1169
  Stack.prototype.set = stackSet;
1170
1170
  function arrayLikeKeys(value, inherited) {
1171
- var isArr = isArray2(value), isArg = !isArr && isArguments(value), isBuff = !isArr && !isArg && isBuffer2(value), isType = !isArr && !isArg && !isBuff && isTypedArray(value), skipIndexes = isArr || isArg || isBuff || isType, result2 = skipIndexes ? baseTimes(value.length, String2) : [], length = result2.length;
1171
+ var isArr = isArray2(value), isArg = !isArr && isArguments(value), isBuff = !isArr && !isArg && isBuffer(value), isType = !isArr && !isArg && !isBuff && isTypedArray(value), skipIndexes = isArr || isArg || isBuff || isType, result2 = skipIndexes ? baseTimes(value.length, String2) : [], length = result2.length;
1172
1172
  for (var key in value) {
1173
1173
  if ((inherited || hasOwnProperty.call(value, key)) && !(skipIndexes && // Safari 9 has enumerable `arguments.length` in strict mode.
1174
1174
  (key == "length" || // Node.js 0.10 has enumerable non-index properties on buffers.
@@ -1246,9 +1246,9 @@ lodash.exports;
1246
1246
  }
1247
1247
  __name(baseAssignValue, "baseAssignValue");
1248
1248
  function baseAt(object, paths) {
1249
- var index2 = -1, length = paths.length, result2 = Array2(length), skip = object == null;
1250
- while (++index2 < length) {
1251
- result2[index2] = skip ? undefined$1 : get4(object, paths[index2]);
1249
+ var index = -1, length = paths.length, result2 = Array2(length), skip = object == null;
1250
+ while (++index < length) {
1251
+ result2[index] = skip ? undefined$1 : get4(object, paths[index]);
1252
1252
  }
1253
1253
  return result2;
1254
1254
  }
@@ -1284,7 +1284,7 @@ lodash.exports;
1284
1284
  }
1285
1285
  } else {
1286
1286
  var tag = getTag(value), isFunc = tag == funcTag || tag == genTag;
1287
- if (isBuffer2(value)) {
1287
+ if (isBuffer(value)) {
1288
1288
  return cloneBuffer(value, isDeep);
1289
1289
  }
1290
1290
  if (tag == objectTag || tag == argsTag || isFunc && !object) {
@@ -1358,7 +1358,7 @@ lodash.exports;
1358
1358
  }
1359
1359
  __name(baseDelay, "baseDelay");
1360
1360
  function baseDifference(array, values2, iteratee2, comparator) {
1361
- var index2 = -1, includes2 = arrayIncludes, isCommon = true, length = array.length, result2 = [], valuesLength = values2.length;
1361
+ var index = -1, includes2 = arrayIncludes, isCommon = true, length = array.length, result2 = [], valuesLength = values2.length;
1362
1362
  if (!length) {
1363
1363
  return result2;
1364
1364
  }
@@ -1374,8 +1374,8 @@ lodash.exports;
1374
1374
  values2 = new SetCache(values2);
1375
1375
  }
1376
1376
  outer:
1377
- while (++index2 < length) {
1378
- var value = array[index2], computed = iteratee2 == null ? value : iteratee2(value);
1377
+ while (++index < length) {
1378
+ var value = array[index], computed = iteratee2 == null ? value : iteratee2(value);
1379
1379
  value = comparator || value !== 0 ? value : 0;
1380
1380
  if (isCommon && computed === computed) {
1381
1381
  var valuesIndex = valuesLength;
@@ -1396,17 +1396,17 @@ lodash.exports;
1396
1396
  var baseEachRight = createBaseEach(baseForOwnRight, true);
1397
1397
  function baseEvery(collection, predicate) {
1398
1398
  var result2 = true;
1399
- baseEach(collection, function(value, index2, collection2) {
1400
- result2 = !!predicate(value, index2, collection2);
1399
+ baseEach(collection, function(value, index, collection2) {
1400
+ result2 = !!predicate(value, index, collection2);
1401
1401
  return result2;
1402
1402
  });
1403
1403
  return result2;
1404
1404
  }
1405
1405
  __name(baseEvery, "baseEvery");
1406
1406
  function baseExtremum(array, iteratee2, comparator) {
1407
- var index2 = -1, length = array.length;
1408
- while (++index2 < length) {
1409
- var value = array[index2], current = iteratee2(value);
1407
+ var index = -1, length = array.length;
1408
+ while (++index < length) {
1409
+ var value = array[index], current = iteratee2(value);
1410
1410
  if (current != null && (computed === undefined$1 ? current === current && !isSymbol(current) : comparator(current, computed))) {
1411
1411
  var computed = current, result2 = value;
1412
1412
  }
@@ -1433,8 +1433,8 @@ lodash.exports;
1433
1433
  __name(baseFill, "baseFill");
1434
1434
  function baseFilter(collection, predicate) {
1435
1435
  var result2 = [];
1436
- baseEach(collection, function(value, index2, collection2) {
1437
- if (predicate(value, index2, collection2)) {
1436
+ baseEach(collection, function(value, index, collection2) {
1437
+ if (predicate(value, index, collection2)) {
1438
1438
  result2.push(value);
1439
1439
  }
1440
1440
  });
@@ -1442,11 +1442,11 @@ lodash.exports;
1442
1442
  }
1443
1443
  __name(baseFilter, "baseFilter");
1444
1444
  function baseFlatten(array, depth, predicate, isStrict, result2) {
1445
- var index2 = -1, length = array.length;
1445
+ var index = -1, length = array.length;
1446
1446
  predicate || (predicate = isFlattenable);
1447
1447
  result2 || (result2 = []);
1448
- while (++index2 < length) {
1449
- var value = array[index2];
1448
+ while (++index < length) {
1449
+ var value = array[index];
1450
1450
  if (depth > 0 && predicate(value)) {
1451
1451
  if (depth > 1) {
1452
1452
  baseFlatten(value, depth - 1, predicate, isStrict, result2);
@@ -1478,11 +1478,11 @@ lodash.exports;
1478
1478
  __name(baseFunctions, "baseFunctions");
1479
1479
  function baseGet(object, path) {
1480
1480
  path = castPath(path, object);
1481
- var index2 = 0, length = path.length;
1482
- while (object != null && index2 < length) {
1483
- object = object[toKey(path[index2++])];
1481
+ var index = 0, length = path.length;
1482
+ while (object != null && index < length) {
1483
+ object = object[toKey(path[index++])];
1484
1484
  }
1485
- return index2 && index2 == length ? object : undefined$1;
1485
+ return index && index == length ? object : undefined$1;
1486
1486
  }
1487
1487
  __name(baseGet, "baseGet");
1488
1488
  function baseGetAllKeys(object, keysFunc, symbolsFunc) {
@@ -1524,10 +1524,10 @@ lodash.exports;
1524
1524
  caches[othIndex] = !comparator && (iteratee2 || length >= 120 && array.length >= 120) ? new SetCache(othIndex && array) : undefined$1;
1525
1525
  }
1526
1526
  array = arrays[0];
1527
- var index2 = -1, seen = caches[0];
1527
+ var index = -1, seen = caches[0];
1528
1528
  outer:
1529
- while (++index2 < length && result2.length < maxLength) {
1530
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
1529
+ while (++index < length && result2.length < maxLength) {
1530
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
1531
1531
  value = comparator || value !== 0 ? value : 0;
1532
1532
  if (!(seen ? cacheHas(seen, computed) : includes2(result2, computed, comparator))) {
1533
1533
  othIndex = othLength;
@@ -1587,8 +1587,8 @@ lodash.exports;
1587
1587
  objTag = objTag == argsTag ? objectTag : objTag;
1588
1588
  othTag = othTag == argsTag ? objectTag : othTag;
1589
1589
  var objIsObj = objTag == objectTag, othIsObj = othTag == objectTag, isSameTag = objTag == othTag;
1590
- if (isSameTag && isBuffer2(object)) {
1591
- if (!isBuffer2(other)) {
1590
+ if (isSameTag && isBuffer(object)) {
1591
+ if (!isBuffer(other)) {
1592
1592
  return false;
1593
1593
  }
1594
1594
  objIsArr = true;
@@ -1618,19 +1618,19 @@ lodash.exports;
1618
1618
  }
1619
1619
  __name(baseIsMap, "baseIsMap");
1620
1620
  function baseIsMatch(object, source2, matchData, customizer) {
1621
- var index2 = matchData.length, length = index2, noCustomizer = !customizer;
1621
+ var index = matchData.length, length = index, noCustomizer = !customizer;
1622
1622
  if (object == null) {
1623
1623
  return !length;
1624
1624
  }
1625
1625
  object = Object2(object);
1626
- while (index2--) {
1627
- var data = matchData[index2];
1626
+ while (index--) {
1627
+ var data = matchData[index];
1628
1628
  if (noCustomizer && data[2] ? data[1] !== object[data[0]] : !(data[0] in object)) {
1629
1629
  return false;
1630
1630
  }
1631
1631
  }
1632
- while (++index2 < length) {
1633
- data = matchData[index2];
1632
+ while (++index < length) {
1633
+ data = matchData[index];
1634
1634
  var key = data[0], objValue = object[key], srcValue = data[1];
1635
1635
  if (noCustomizer && data[2]) {
1636
1636
  if (objValue === undefined$1 && !(key in object)) {
@@ -1713,9 +1713,9 @@ lodash.exports;
1713
1713
  }
1714
1714
  __name(baseLt, "baseLt");
1715
1715
  function baseMap(collection, iteratee2) {
1716
- var index2 = -1, result2 = isArrayLike(collection) ? Array2(collection.length) : [];
1716
+ var index = -1, result2 = isArrayLike(collection) ? Array2(collection.length) : [];
1717
1717
  baseEach(collection, function(value, key, collection2) {
1718
- result2[++index2] = iteratee2(value, key, collection2);
1718
+ result2[++index] = iteratee2(value, key, collection2);
1719
1719
  });
1720
1720
  return result2;
1721
1721
  }
@@ -1767,7 +1767,7 @@ lodash.exports;
1767
1767
  var newValue = customizer ? customizer(objValue, srcValue, key + "", object, source2, stack) : undefined$1;
1768
1768
  var isCommon = newValue === undefined$1;
1769
1769
  if (isCommon) {
1770
- var isArr = isArray2(srcValue), isBuff = !isArr && isBuffer2(srcValue), isTyped = !isArr && !isBuff && isTypedArray(srcValue);
1770
+ var isArr = isArray2(srcValue), isBuff = !isArr && isBuffer(srcValue), isTyped = !isArr && !isBuff && isTypedArray(srcValue);
1771
1771
  newValue = srcValue;
1772
1772
  if (isArr || isBuff || isTyped) {
1773
1773
  if (isArray2(objValue)) {
@@ -1824,13 +1824,13 @@ lodash.exports;
1824
1824
  } else {
1825
1825
  iteratees = [identity];
1826
1826
  }
1827
- var index2 = -1;
1827
+ var index = -1;
1828
1828
  iteratees = arrayMap(iteratees, baseUnary(getIteratee()));
1829
1829
  var result2 = baseMap(collection, function(value, key, collection2) {
1830
1830
  var criteria = arrayMap(iteratees, function(iteratee2) {
1831
1831
  return iteratee2(value);
1832
1832
  });
1833
- return { "criteria": criteria, "index": ++index2, "value": value };
1833
+ return { "criteria": criteria, "index": ++index, "value": value };
1834
1834
  });
1835
1835
  return baseSortBy(result2, function(object, other) {
1836
1836
  return compareMultiple(object, other, orders);
@@ -1844,9 +1844,9 @@ lodash.exports;
1844
1844
  }
1845
1845
  __name(basePick, "basePick");
1846
1846
  function basePickBy(object, paths, predicate) {
1847
- var index2 = -1, length = paths.length, result2 = {};
1848
- while (++index2 < length) {
1849
- var path = paths[index2], value = baseGet(object, path);
1847
+ var index = -1, length = paths.length, result2 = {};
1848
+ while (++index < length) {
1849
+ var path = paths[index], value = baseGet(object, path);
1850
1850
  if (predicate(value, path)) {
1851
1851
  baseSet(result2, castPath(path, object), value);
1852
1852
  }
@@ -1861,15 +1861,15 @@ lodash.exports;
1861
1861
  }
1862
1862
  __name(basePropertyDeep, "basePropertyDeep");
1863
1863
  function basePullAll(array, values2, iteratee2, comparator) {
1864
- var indexOf2 = comparator ? baseIndexOfWith : baseIndexOf, index2 = -1, length = values2.length, seen = array;
1864
+ var indexOf2 = comparator ? baseIndexOfWith : baseIndexOf, index = -1, length = values2.length, seen = array;
1865
1865
  if (array === values2) {
1866
1866
  values2 = copyArray(values2);
1867
1867
  }
1868
1868
  if (iteratee2) {
1869
1869
  seen = arrayMap(array, baseUnary(iteratee2));
1870
1870
  }
1871
- while (++index2 < length) {
1872
- var fromIndex = 0, value = values2[index2], computed = iteratee2 ? iteratee2(value) : value;
1871
+ while (++index < length) {
1872
+ var fromIndex = 0, value = values2[index], computed = iteratee2 ? iteratee2(value) : value;
1873
1873
  while ((fromIndex = indexOf2(seen, computed, fromIndex, comparator)) > -1) {
1874
1874
  if (seen !== array) {
1875
1875
  splice.call(seen, fromIndex, 1);
@@ -1883,13 +1883,13 @@ lodash.exports;
1883
1883
  function basePullAt(array, indexes) {
1884
1884
  var length = array ? indexes.length : 0, lastIndex = length - 1;
1885
1885
  while (length--) {
1886
- var index2 = indexes[length];
1887
- if (length == lastIndex || index2 !== previous) {
1888
- var previous = index2;
1889
- if (isIndex(index2)) {
1890
- splice.call(array, index2, 1);
1886
+ var index = indexes[length];
1887
+ if (length == lastIndex || index !== previous) {
1888
+ var previous = index;
1889
+ if (isIndex(index)) {
1890
+ splice.call(array, index, 1);
1891
1891
  } else {
1892
- baseUnset(array, index2);
1892
+ baseUnset(array, index);
1893
1893
  }
1894
1894
  }
1895
1895
  }
@@ -1901,9 +1901,9 @@ lodash.exports;
1901
1901
  }
1902
1902
  __name(baseRandom, "baseRandom");
1903
1903
  function baseRange(start, end, step, fromRight) {
1904
- var index2 = -1, length = nativeMax(nativeCeil((end - start) / (step || 1)), 0), result2 = Array2(length);
1904
+ var index = -1, length = nativeMax(nativeCeil((end - start) / (step || 1)), 0), result2 = Array2(length);
1905
1905
  while (length--) {
1906
- result2[fromRight ? length : ++index2] = start;
1906
+ result2[fromRight ? length : ++index] = start;
1907
1907
  start += step;
1908
1908
  }
1909
1909
  return result2;
@@ -1944,17 +1944,17 @@ lodash.exports;
1944
1944
  return object;
1945
1945
  }
1946
1946
  path = castPath(path, object);
1947
- var index2 = -1, length = path.length, lastIndex = length - 1, nested = object;
1948
- while (nested != null && ++index2 < length) {
1949
- var key = toKey(path[index2]), newValue = value;
1947
+ var index = -1, length = path.length, lastIndex = length - 1, nested = object;
1948
+ while (nested != null && ++index < length) {
1949
+ var key = toKey(path[index]), newValue = value;
1950
1950
  if (key === "__proto__" || key === "constructor" || key === "prototype") {
1951
1951
  return object;
1952
1952
  }
1953
- if (index2 != lastIndex) {
1953
+ if (index != lastIndex) {
1954
1954
  var objValue = nested[key];
1955
1955
  newValue = customizer ? customizer(objValue, key, nested) : undefined$1;
1956
1956
  if (newValue === undefined$1) {
1957
- newValue = isObject(objValue) ? objValue : isIndex(path[index2 + 1]) ? [] : {};
1957
+ newValue = isObject(objValue) ? objValue : isIndex(path[index + 1]) ? [] : {};
1958
1958
  }
1959
1959
  }
1960
1960
  assignValue(nested, key, newValue);
@@ -1980,7 +1980,7 @@ lodash.exports;
1980
1980
  }
1981
1981
  __name(baseShuffle, "baseShuffle");
1982
1982
  function baseSlice(array, start, end) {
1983
- var index2 = -1, length = array.length;
1983
+ var index = -1, length = array.length;
1984
1984
  if (start < 0) {
1985
1985
  start = -start > length ? 0 : length + start;
1986
1986
  }
@@ -1991,16 +1991,16 @@ lodash.exports;
1991
1991
  length = start > end ? 0 : end - start >>> 0;
1992
1992
  start >>>= 0;
1993
1993
  var result2 = Array2(length);
1994
- while (++index2 < length) {
1995
- result2[index2] = array[index2 + start];
1994
+ while (++index < length) {
1995
+ result2[index] = array[index + start];
1996
1996
  }
1997
1997
  return result2;
1998
1998
  }
1999
1999
  __name(baseSlice, "baseSlice");
2000
2000
  function baseSome(collection, predicate) {
2001
2001
  var result2;
2002
- baseEach(collection, function(value, index2, collection2) {
2003
- result2 = predicate(value, index2, collection2);
2002
+ baseEach(collection, function(value, index, collection2) {
2003
+ result2 = predicate(value, index, collection2);
2004
2004
  return !result2;
2005
2005
  });
2006
2006
  return !!result2;
@@ -2054,10 +2054,10 @@ lodash.exports;
2054
2054
  }
2055
2055
  __name(baseSortedIndexBy, "baseSortedIndexBy");
2056
2056
  function baseSortedUniq(array, iteratee2) {
2057
- var index2 = -1, length = array.length, resIndex = 0, result2 = [];
2058
- while (++index2 < length) {
2059
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
2060
- if (!index2 || !eq(computed, seen)) {
2057
+ var index = -1, length = array.length, resIndex = 0, result2 = [];
2058
+ while (++index < length) {
2059
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
2060
+ if (!index || !eq(computed, seen)) {
2061
2061
  var seen = computed;
2062
2062
  result2[resIndex++] = value === 0 ? 0 : value;
2063
2063
  }
@@ -2090,7 +2090,7 @@ lodash.exports;
2090
2090
  }
2091
2091
  __name(baseToString, "baseToString");
2092
2092
  function baseUniq(array, iteratee2, comparator) {
2093
- var index2 = -1, includes2 = arrayIncludes, length = array.length, isCommon = true, result2 = [], seen = result2;
2093
+ var index = -1, includes2 = arrayIncludes, length = array.length, isCommon = true, result2 = [], seen = result2;
2094
2094
  if (comparator) {
2095
2095
  isCommon = false;
2096
2096
  includes2 = arrayIncludesWith;
@@ -2106,8 +2106,8 @@ lodash.exports;
2106
2106
  seen = iteratee2 ? [] : result2;
2107
2107
  }
2108
2108
  outer:
2109
- while (++index2 < length) {
2110
- var value = array[index2], computed = iteratee2 ? iteratee2(value) : value;
2109
+ while (++index < length) {
2110
+ var value = array[index], computed = iteratee2 ? iteratee2(value) : value;
2111
2111
  value = comparator || value !== 0 ? value : 0;
2112
2112
  if (isCommon && computed === computed) {
2113
2113
  var seenIndex = seen.length;
@@ -2141,10 +2141,10 @@ lodash.exports;
2141
2141
  }
2142
2142
  __name(baseUpdate, "baseUpdate");
2143
2143
  function baseWhile(array, predicate, isDrop, fromRight) {
2144
- var length = array.length, index2 = fromRight ? length : -1;
2145
- while ((fromRight ? index2-- : ++index2 < length) && predicate(array[index2], index2, array)) {
2144
+ var length = array.length, index = fromRight ? length : -1;
2145
+ while ((fromRight ? index-- : ++index < length) && predicate(array[index], index, array)) {
2146
2146
  }
2147
- return isDrop ? baseSlice(array, fromRight ? 0 : index2, fromRight ? index2 + 1 : length) : baseSlice(array, fromRight ? index2 + 1 : 0, fromRight ? length : index2);
2147
+ return isDrop ? baseSlice(array, fromRight ? 0 : index, fromRight ? index + 1 : length) : baseSlice(array, fromRight ? index + 1 : 0, fromRight ? length : index);
2148
2148
  }
2149
2149
  __name(baseWhile, "baseWhile");
2150
2150
  function baseWrapperValue(value, actions) {
@@ -2162,12 +2162,12 @@ lodash.exports;
2162
2162
  if (length < 2) {
2163
2163
  return length ? baseUniq(arrays[0]) : [];
2164
2164
  }
2165
- var index2 = -1, result2 = Array2(length);
2166
- while (++index2 < length) {
2167
- var array = arrays[index2], othIndex = -1;
2165
+ var index = -1, result2 = Array2(length);
2166
+ while (++index < length) {
2167
+ var array = arrays[index], othIndex = -1;
2168
2168
  while (++othIndex < length) {
2169
- if (othIndex != index2) {
2170
- result2[index2] = baseDifference(result2[index2] || array, arrays[othIndex], iteratee2, comparator);
2169
+ if (othIndex != index) {
2170
+ result2[index] = baseDifference(result2[index] || array, arrays[othIndex], iteratee2, comparator);
2171
2171
  }
2172
2172
  }
2173
2173
  }
@@ -2175,10 +2175,10 @@ lodash.exports;
2175
2175
  }
2176
2176
  __name(baseXor, "baseXor");
2177
2177
  function baseZipObject(props, values2, assignFunc) {
2178
- var index2 = -1, length = props.length, valsLength = values2.length, result2 = {};
2179
- while (++index2 < length) {
2180
- var value = index2 < valsLength ? values2[index2] : undefined$1;
2181
- assignFunc(result2, props[index2], value);
2178
+ var index = -1, length = props.length, valsLength = values2.length, result2 = {};
2179
+ while (++index < length) {
2180
+ var value = index < valsLength ? values2[index] : undefined$1;
2181
+ assignFunc(result2, props[index], value);
2182
2182
  }
2183
2183
  return result2;
2184
2184
  }
@@ -2208,12 +2208,12 @@ lodash.exports;
2208
2208
  var clearTimeout = ctxClearTimeout || function(id) {
2209
2209
  return root.clearTimeout(id);
2210
2210
  };
2211
- function cloneBuffer(buffer2, isDeep) {
2211
+ function cloneBuffer(buffer, isDeep) {
2212
2212
  if (isDeep) {
2213
- return buffer2.slice();
2213
+ return buffer.slice();
2214
2214
  }
2215
- var length = buffer2.length, result2 = allocUnsafe ? allocUnsafe(length) : new buffer2.constructor(length);
2216
- buffer2.copy(result2);
2215
+ var length = buffer.length, result2 = allocUnsafe ? allocUnsafe(length) : new buffer.constructor(length);
2216
+ buffer.copy(result2);
2217
2217
  return result2;
2218
2218
  }
2219
2219
  __name(cloneBuffer, "cloneBuffer");
@@ -2224,8 +2224,8 @@ lodash.exports;
2224
2224
  }
2225
2225
  __name(cloneArrayBuffer, "cloneArrayBuffer");
2226
2226
  function cloneDataView(dataView, isDeep) {
2227
- var buffer2 = isDeep ? cloneArrayBuffer(dataView.buffer) : dataView.buffer;
2228
- return new dataView.constructor(buffer2, dataView.byteOffset, dataView.byteLength);
2227
+ var buffer = isDeep ? cloneArrayBuffer(dataView.buffer) : dataView.buffer;
2228
+ return new dataView.constructor(buffer, dataView.byteOffset, dataView.byteLength);
2229
2229
  }
2230
2230
  __name(cloneDataView, "cloneDataView");
2231
2231
  function cloneRegExp2(regexp) {
@@ -2239,8 +2239,8 @@ lodash.exports;
2239
2239
  }
2240
2240
  __name(cloneSymbol, "cloneSymbol");
2241
2241
  function cloneTypedArray(typedArray, isDeep) {
2242
- var buffer2 = isDeep ? cloneArrayBuffer(typedArray.buffer) : typedArray.buffer;
2243
- return new typedArray.constructor(buffer2, typedArray.byteOffset, typedArray.length);
2242
+ var buffer = isDeep ? cloneArrayBuffer(typedArray.buffer) : typedArray.buffer;
2243
+ return new typedArray.constructor(buffer, typedArray.byteOffset, typedArray.length);
2244
2244
  }
2245
2245
  __name(cloneTypedArray, "cloneTypedArray");
2246
2246
  function compareAscending(value, other) {
@@ -2258,14 +2258,14 @@ lodash.exports;
2258
2258
  }
2259
2259
  __name(compareAscending, "compareAscending");
2260
2260
  function compareMultiple(object, other, orders) {
2261
- var index2 = -1, objCriteria = object.criteria, othCriteria = other.criteria, length = objCriteria.length, ordersLength = orders.length;
2262
- while (++index2 < length) {
2263
- var result2 = compareAscending(objCriteria[index2], othCriteria[index2]);
2261
+ var index = -1, objCriteria = object.criteria, othCriteria = other.criteria, length = objCriteria.length, ordersLength = orders.length;
2262
+ while (++index < length) {
2263
+ var result2 = compareAscending(objCriteria[index], othCriteria[index]);
2264
2264
  if (result2) {
2265
- if (index2 >= ordersLength) {
2265
+ if (index >= ordersLength) {
2266
2266
  return result2;
2267
2267
  }
2268
- var order = orders[index2];
2268
+ var order = orders[index];
2269
2269
  return result2 * (order == "desc" ? -1 : 1);
2270
2270
  }
2271
2271
  }
@@ -2306,10 +2306,10 @@ lodash.exports;
2306
2306
  }
2307
2307
  __name(composeArgsRight, "composeArgsRight");
2308
2308
  function copyArray(source2, array) {
2309
- var index2 = -1, length = source2.length;
2309
+ var index = -1, length = source2.length;
2310
2310
  array || (array = Array2(length));
2311
- while (++index2 < length) {
2312
- array[index2] = source2[index2];
2311
+ while (++index < length) {
2312
+ array[index] = source2[index];
2313
2313
  }
2314
2314
  return array;
2315
2315
  }
@@ -2317,9 +2317,9 @@ lodash.exports;
2317
2317
  function copyObject(source2, props, object, customizer) {
2318
2318
  var isNew = !object;
2319
2319
  object || (object = {});
2320
- var index2 = -1, length = props.length;
2321
- while (++index2 < length) {
2322
- var key = props[index2];
2320
+ var index = -1, length = props.length;
2321
+ while (++index < length) {
2322
+ var key = props[index];
2323
2323
  var newValue = customizer ? customizer(object[key], source2[key], key, object, source2) : undefined$1;
2324
2324
  if (newValue === undefined$1) {
2325
2325
  newValue = source2[key];
@@ -2350,17 +2350,17 @@ lodash.exports;
2350
2350
  __name(createAggregator, "createAggregator");
2351
2351
  function createAssigner(assigner) {
2352
2352
  return baseRest(function(object, sources) {
2353
- var index2 = -1, length = sources.length, customizer = length > 1 ? sources[length - 1] : undefined$1, guard = length > 2 ? sources[2] : undefined$1;
2353
+ var index = -1, length = sources.length, customizer = length > 1 ? sources[length - 1] : undefined$1, guard = length > 2 ? sources[2] : undefined$1;
2354
2354
  customizer = assigner.length > 3 && typeof customizer == "function" ? (length--, customizer) : undefined$1;
2355
2355
  if (guard && isIterateeCall(sources[0], sources[1], guard)) {
2356
2356
  customizer = length < 3 ? undefined$1 : customizer;
2357
2357
  length = 1;
2358
2358
  }
2359
2359
  object = Object2(object);
2360
- while (++index2 < length) {
2361
- var source2 = sources[index2];
2360
+ while (++index < length) {
2361
+ var source2 = sources[index];
2362
2362
  if (source2) {
2363
- assigner(object, source2, index2, customizer);
2363
+ assigner(object, source2, index, customizer);
2364
2364
  }
2365
2365
  }
2366
2366
  return object;
@@ -2375,9 +2375,9 @@ lodash.exports;
2375
2375
  if (!isArrayLike(collection)) {
2376
2376
  return eachFunc(collection, iteratee2);
2377
2377
  }
2378
- var length = collection.length, index2 = fromRight ? length : -1, iterable = Object2(collection);
2379
- while (fromRight ? index2-- : ++index2 < length) {
2380
- if (iteratee2(iterable[index2], index2, iterable) === false) {
2378
+ var length = collection.length, index = fromRight ? length : -1, iterable = Object2(collection);
2379
+ while (fromRight ? index-- : ++index < length) {
2380
+ if (iteratee2(iterable[index], index, iterable) === false) {
2381
2381
  break;
2382
2382
  }
2383
2383
  }
@@ -2387,9 +2387,9 @@ lodash.exports;
2387
2387
  __name(createBaseEach, "createBaseEach");
2388
2388
  function createBaseFor(fromRight) {
2389
2389
  return function(object, iteratee2, keysFunc) {
2390
- var index2 = -1, iterable = Object2(object), props = keysFunc(object), length = props.length;
2390
+ var index = -1, iterable = Object2(object), props = keysFunc(object), length = props.length;
2391
2391
  while (length--) {
2392
- var key = props[fromRight ? length : ++index2];
2392
+ var key = props[fromRight ? length : ++index];
2393
2393
  if (iteratee2(iterable[key], key, iterable) === false) {
2394
2394
  break;
2395
2395
  }
@@ -2453,9 +2453,9 @@ lodash.exports;
2453
2453
  function createCurry(func, bitmask, arity) {
2454
2454
  var Ctor = createCtor(func);
2455
2455
  function wrapper() {
2456
- var length = arguments.length, args = Array2(length), index2 = length, placeholder = getHolder(wrapper);
2457
- while (index2--) {
2458
- args[index2] = arguments[index2];
2456
+ var length = arguments.length, args = Array2(length), index = length, placeholder = getHolder(wrapper);
2457
+ while (index--) {
2458
+ args[index] = arguments[index];
2459
2459
  }
2460
2460
  var holders = length < 3 && args[0] !== placeholder && args[length - 1] !== placeholder ? [] : replaceHolders(args, placeholder);
2461
2461
  length -= holders.length;
@@ -2490,19 +2490,19 @@ lodash.exports;
2490
2490
  return iteratee2(iterable[key], key, iterable);
2491
2491
  }, "predicate");
2492
2492
  }
2493
- var index2 = findIndexFunc(collection, predicate, fromIndex);
2494
- return index2 > -1 ? iterable[iteratee2 ? collection[index2] : index2] : undefined$1;
2493
+ var index = findIndexFunc(collection, predicate, fromIndex);
2494
+ return index > -1 ? iterable[iteratee2 ? collection[index] : index] : undefined$1;
2495
2495
  };
2496
2496
  }
2497
2497
  __name(createFind, "createFind");
2498
2498
  function createFlow(fromRight) {
2499
2499
  return flatRest(function(funcs) {
2500
- var length = funcs.length, index2 = length, prereq = LodashWrapper.prototype.thru;
2500
+ var length = funcs.length, index = length, prereq = LodashWrapper.prototype.thru;
2501
2501
  if (fromRight) {
2502
2502
  funcs.reverse();
2503
2503
  }
2504
- while (index2--) {
2505
- var func = funcs[index2];
2504
+ while (index--) {
2505
+ var func = funcs[index];
2506
2506
  if (typeof func != "function") {
2507
2507
  throw new TypeError2(FUNC_ERROR_TEXT);
2508
2508
  }
@@ -2510,9 +2510,9 @@ lodash.exports;
2510
2510
  var wrapper = new LodashWrapper([], true);
2511
2511
  }
2512
2512
  }
2513
- index2 = wrapper ? index2 : length;
2514
- while (++index2 < length) {
2515
- func = funcs[index2];
2513
+ index = wrapper ? index : length;
2514
+ while (++index < length) {
2515
+ func = funcs[index];
2516
2516
  var funcName = getFuncName(func), data = funcName == "wrapper" ? getData(func) : undefined$1;
2517
2517
  if (data && isLaziable(data[0]) && data[1] == (WRAP_ARY_FLAG | WRAP_CURRY_FLAG | WRAP_PARTIAL_FLAG | WRAP_REARG_FLAG) && !data[4].length && data[9] == 1) {
2518
2518
  wrapper = wrapper[getFuncName(data[0])].apply(wrapper, data[3]);
@@ -2525,9 +2525,9 @@ lodash.exports;
2525
2525
  if (wrapper && args.length == 1 && isArray2(value)) {
2526
2526
  return wrapper.plant(value).value();
2527
2527
  }
2528
- var index3 = 0, result2 = length ? funcs[index3].apply(this, args) : value;
2529
- while (++index3 < length) {
2530
- result2 = funcs[index3].call(this, result2);
2528
+ var index2 = 0, result2 = length ? funcs[index2].apply(this, args) : value;
2529
+ while (++index2 < length) {
2530
+ result2 = funcs[index2].call(this, result2);
2531
2531
  }
2532
2532
  return result2;
2533
2533
  };
@@ -2537,9 +2537,9 @@ lodash.exports;
2537
2537
  function createHybrid(func, bitmask, thisArg, partials, holders, partialsRight, holdersRight, argPos, ary2, arity) {
2538
2538
  var isAry = bitmask & WRAP_ARY_FLAG, isBind = bitmask & WRAP_BIND_FLAG, isBindKey = bitmask & WRAP_BIND_KEY_FLAG, isCurried = bitmask & (WRAP_CURRY_FLAG | WRAP_CURRY_RIGHT_FLAG), isFlip = bitmask & WRAP_FLIP_FLAG, Ctor = isBindKey ? undefined$1 : createCtor(func);
2539
2539
  function wrapper() {
2540
- var length = arguments.length, args = Array2(length), index2 = length;
2541
- while (index2--) {
2542
- args[index2] = arguments[index2];
2540
+ var length = arguments.length, args = Array2(length), index = length;
2541
+ while (index--) {
2542
+ args[index] = arguments[index];
2543
2543
  }
2544
2544
  if (isCurried) {
2545
2545
  var placeholder = getHolder(wrapper), holdersCount = countHolders(args, placeholder);
@@ -2824,13 +2824,13 @@ lodash.exports;
2824
2824
  if (arrStacked && othStacked) {
2825
2825
  return arrStacked == other && othStacked == array;
2826
2826
  }
2827
- var index2 = -1, result2 = true, seen = bitmask & COMPARE_UNORDERED_FLAG ? new SetCache() : undefined$1;
2827
+ var index = -1, result2 = true, seen = bitmask & COMPARE_UNORDERED_FLAG ? new SetCache() : undefined$1;
2828
2828
  stack.set(array, other);
2829
2829
  stack.set(other, array);
2830
- while (++index2 < arrLength) {
2831
- var arrValue = array[index2], othValue = other[index2];
2830
+ while (++index < arrLength) {
2831
+ var arrValue = array[index], othValue = other[index];
2832
2832
  if (customizer) {
2833
- var compared = isPartial ? customizer(othValue, arrValue, index2, other, array, stack) : customizer(arrValue, othValue, index2, array, other, stack);
2833
+ var compared = isPartial ? customizer(othValue, arrValue, index, other, array, stack) : customizer(arrValue, othValue, index, array, other, stack);
2834
2834
  }
2835
2835
  if (compared !== undefined$1) {
2836
2836
  if (compared) {
@@ -2910,9 +2910,9 @@ lodash.exports;
2910
2910
  if (objLength != othLength && !isPartial) {
2911
2911
  return false;
2912
2912
  }
2913
- var index2 = objLength;
2914
- while (index2--) {
2915
- var key = objProps[index2];
2913
+ var index = objLength;
2914
+ while (index--) {
2915
+ var key = objProps[index];
2916
2916
  if (!(isPartial ? key in other : hasOwnProperty.call(other, key))) {
2917
2917
  return false;
2918
2918
  }
@@ -2926,8 +2926,8 @@ lodash.exports;
2926
2926
  stack.set(object, other);
2927
2927
  stack.set(other, object);
2928
2928
  var skipCtor = isPartial;
2929
- while (++index2 < objLength) {
2930
- key = objProps[index2];
2929
+ while (++index < objLength) {
2930
+ key = objProps[index];
2931
2931
  var objValue = object[key], othValue = other[key];
2932
2932
  if (customizer) {
2933
2933
  var compared = isPartial ? customizer(othValue, objValue, key, other, object, stack) : customizer(objValue, othValue, key, object, other, stack);
@@ -3062,9 +3062,9 @@ lodash.exports;
3062
3062
  }, "getTag");
3063
3063
  }
3064
3064
  function getView(start, end, transforms) {
3065
- var index2 = -1, length = transforms.length;
3066
- while (++index2 < length) {
3067
- var data = transforms[index2], size2 = data.size;
3065
+ var index = -1, length = transforms.length;
3066
+ while (++index < length) {
3067
+ var data = transforms[index], size2 = data.size;
3068
3068
  switch (data.type) {
3069
3069
  case "drop":
3070
3070
  start += size2;
@@ -3090,15 +3090,15 @@ lodash.exports;
3090
3090
  __name(getWrapDetails, "getWrapDetails");
3091
3091
  function hasPath(object, path, hasFunc) {
3092
3092
  path = castPath(path, object);
3093
- var index2 = -1, length = path.length, result2 = false;
3094
- while (++index2 < length) {
3095
- var key = toKey(path[index2]);
3093
+ var index = -1, length = path.length, result2 = false;
3094
+ while (++index < length) {
3095
+ var key = toKey(path[index]);
3096
3096
  if (!(result2 = object != null && hasFunc(object, key))) {
3097
3097
  break;
3098
3098
  }
3099
3099
  object = object[key];
3100
3100
  }
3101
- if (result2 || ++index2 != length) {
3101
+ if (result2 || ++index != length) {
3102
3102
  return result2;
3103
3103
  }
3104
3104
  length = object == null ? 0 : object.length;
@@ -3173,13 +3173,13 @@ lodash.exports;
3173
3173
  return !!length && (type == "number" || type != "symbol" && reIsUint.test(value)) && (value > -1 && value % 1 == 0 && value < length);
3174
3174
  }
3175
3175
  __name(isIndex, "isIndex");
3176
- function isIterateeCall(value, index2, object) {
3176
+ function isIterateeCall(value, index, object) {
3177
3177
  if (!isObject(object)) {
3178
3178
  return false;
3179
3179
  }
3180
- var type = typeof index2;
3181
- if (type == "number" ? isArrayLike(object) && isIndex(index2, object.length) : type == "string" && index2 in object) {
3182
- return eq(object[index2], value);
3180
+ var type = typeof index;
3181
+ if (type == "number" ? isArrayLike(object) && isIndex(index, object.length) : type == "string" && index in object) {
3182
+ return eq(object[index], value);
3183
3183
  }
3184
3184
  return false;
3185
3185
  }
@@ -3300,14 +3300,14 @@ lodash.exports;
3300
3300
  function overRest(func, start, transform2) {
3301
3301
  start = nativeMax(start === undefined$1 ? func.length - 1 : start, 0);
3302
3302
  return function() {
3303
- var args = arguments, index2 = -1, length = nativeMax(args.length - start, 0), array = Array2(length);
3304
- while (++index2 < length) {
3305
- array[index2] = args[start + index2];
3303
+ var args = arguments, index = -1, length = nativeMax(args.length - start, 0), array = Array2(length);
3304
+ while (++index < length) {
3305
+ array[index] = args[start + index];
3306
3306
  }
3307
- index2 = -1;
3307
+ index = -1;
3308
3308
  var otherArgs = Array2(start + 1);
3309
- while (++index2 < start) {
3310
- otherArgs[index2] = args[index2];
3309
+ while (++index < start) {
3310
+ otherArgs[index] = args[index];
3311
3311
  }
3312
3312
  otherArgs[start] = transform2(array);
3313
3313
  return apply(func, this, otherArgs);
@@ -3321,8 +3321,8 @@ lodash.exports;
3321
3321
  function reorder(array, indexes) {
3322
3322
  var arrLength = array.length, length = nativeMin(indexes.length, arrLength), oldArray = copyArray(array);
3323
3323
  while (length--) {
3324
- var index2 = indexes[length];
3325
- array[length] = isIndex(index2, arrLength) ? oldArray[index2] : undefined$1;
3324
+ var index = indexes[length];
3325
+ array[length] = isIndex(index, arrLength) ? oldArray[index] : undefined$1;
3326
3326
  }
3327
3327
  return array;
3328
3328
  }
@@ -3364,12 +3364,12 @@ lodash.exports;
3364
3364
  }
3365
3365
  __name(shortOut, "shortOut");
3366
3366
  function shuffleSelf(array, size2) {
3367
- var index2 = -1, length = array.length, lastIndex = length - 1;
3367
+ var index = -1, length = array.length, lastIndex = length - 1;
3368
3368
  size2 = size2 === undefined$1 ? length : size2;
3369
- while (++index2 < size2) {
3370
- var rand = baseRandom(index2, lastIndex), value = array[rand];
3371
- array[rand] = array[index2];
3372
- array[index2] = value;
3369
+ while (++index < size2) {
3370
+ var rand = baseRandom(index, lastIndex), value = array[rand];
3371
+ array[rand] = array[index];
3372
+ array[index] = value;
3373
3373
  }
3374
3374
  array.length = size2;
3375
3375
  return array;
@@ -3438,17 +3438,17 @@ lodash.exports;
3438
3438
  if (!length || size2 < 1) {
3439
3439
  return [];
3440
3440
  }
3441
- var index2 = 0, resIndex = 0, result2 = Array2(nativeCeil(length / size2));
3442
- while (index2 < length) {
3443
- result2[resIndex++] = baseSlice(array, index2, index2 += size2);
3441
+ var index = 0, resIndex = 0, result2 = Array2(nativeCeil(length / size2));
3442
+ while (index < length) {
3443
+ result2[resIndex++] = baseSlice(array, index, index += size2);
3444
3444
  }
3445
3445
  return result2;
3446
3446
  }
3447
3447
  __name(chunk, "chunk");
3448
3448
  function compact(array) {
3449
- var index2 = -1, length = array == null ? 0 : array.length, resIndex = 0, result2 = [];
3450
- while (++index2 < length) {
3451
- var value = array[index2];
3449
+ var index = -1, length = array == null ? 0 : array.length, resIndex = 0, result2 = [];
3450
+ while (++index < length) {
3451
+ var value = array[index];
3452
3452
  if (value) {
3453
3453
  result2[resIndex++] = value;
3454
3454
  }
@@ -3461,9 +3461,9 @@ lodash.exports;
3461
3461
  if (!length) {
3462
3462
  return [];
3463
3463
  }
3464
- var args = Array2(length - 1), array = arguments[0], index2 = length;
3465
- while (index2--) {
3466
- args[index2 - 1] = arguments[index2];
3464
+ var args = Array2(length - 1), array = arguments[0], index = length;
3465
+ while (index--) {
3466
+ args[index - 1] = arguments[index];
3467
3467
  }
3468
3468
  return arrayPush(isArray2(array) ? copyArray(array) : [array], baseFlatten(args, 1));
3469
3469
  }
@@ -3529,11 +3529,11 @@ lodash.exports;
3529
3529
  if (!length) {
3530
3530
  return -1;
3531
3531
  }
3532
- var index2 = fromIndex == null ? 0 : toInteger(fromIndex);
3533
- if (index2 < 0) {
3534
- index2 = nativeMax(length + index2, 0);
3532
+ var index = fromIndex == null ? 0 : toInteger(fromIndex);
3533
+ if (index < 0) {
3534
+ index = nativeMax(length + index, 0);
3535
3535
  }
3536
- return baseFindIndex(array, getIteratee(predicate, 3), index2);
3536
+ return baseFindIndex(array, getIteratee(predicate, 3), index);
3537
3537
  }
3538
3538
  __name(findIndex, "findIndex");
3539
3539
  function findLastIndex(array, predicate, fromIndex) {
@@ -3541,12 +3541,12 @@ lodash.exports;
3541
3541
  if (!length) {
3542
3542
  return -1;
3543
3543
  }
3544
- var index2 = length - 1;
3544
+ var index = length - 1;
3545
3545
  if (fromIndex !== undefined$1) {
3546
- index2 = toInteger(fromIndex);
3547
- index2 = fromIndex < 0 ? nativeMax(length + index2, 0) : nativeMin(index2, length - 1);
3546
+ index = toInteger(fromIndex);
3547
+ index = fromIndex < 0 ? nativeMax(length + index, 0) : nativeMin(index, length - 1);
3548
3548
  }
3549
- return baseFindIndex(array, getIteratee(predicate, 3), index2, true);
3549
+ return baseFindIndex(array, getIteratee(predicate, 3), index, true);
3550
3550
  }
3551
3551
  __name(findLastIndex, "findLastIndex");
3552
3552
  function flatten(array) {
@@ -3569,9 +3569,9 @@ lodash.exports;
3569
3569
  }
3570
3570
  __name(flattenDepth, "flattenDepth");
3571
3571
  function fromPairs(pairs) {
3572
- var index2 = -1, length = pairs == null ? 0 : pairs.length, result2 = {};
3573
- while (++index2 < length) {
3574
- var pair = pairs[index2];
3572
+ var index = -1, length = pairs == null ? 0 : pairs.length, result2 = {};
3573
+ while (++index < length) {
3574
+ var pair = pairs[index];
3575
3575
  result2[pair[0]] = pair[1];
3576
3576
  }
3577
3577
  return result2;
@@ -3586,11 +3586,11 @@ lodash.exports;
3586
3586
  if (!length) {
3587
3587
  return -1;
3588
3588
  }
3589
- var index2 = fromIndex == null ? 0 : toInteger(fromIndex);
3590
- if (index2 < 0) {
3591
- index2 = nativeMax(length + index2, 0);
3589
+ var index = fromIndex == null ? 0 : toInteger(fromIndex);
3590
+ if (index < 0) {
3591
+ index = nativeMax(length + index, 0);
3592
3592
  }
3593
- return baseIndexOf(array, value, index2);
3593
+ return baseIndexOf(array, value, index);
3594
3594
  }
3595
3595
  __name(indexOf, "indexOf");
3596
3596
  function initial(array) {
@@ -3633,12 +3633,12 @@ lodash.exports;
3633
3633
  if (!length) {
3634
3634
  return -1;
3635
3635
  }
3636
- var index2 = length;
3636
+ var index = length;
3637
3637
  if (fromIndex !== undefined$1) {
3638
- index2 = toInteger(fromIndex);
3639
- index2 = index2 < 0 ? nativeMax(length + index2, 0) : nativeMin(index2, length - 1);
3638
+ index = toInteger(fromIndex);
3639
+ index = index < 0 ? nativeMax(length + index, 0) : nativeMin(index, length - 1);
3640
3640
  }
3641
- return value === value ? strictLastIndexOf(array, value, index2) : baseFindIndex(array, baseIsNaN, index2, true);
3641
+ return value === value ? strictLastIndexOf(array, value, index) : baseFindIndex(array, baseIsNaN, index, true);
3642
3642
  }
3643
3643
  __name(lastIndexOf, "lastIndexOf");
3644
3644
  function nth(array, n) {
@@ -3660,8 +3660,8 @@ lodash.exports;
3660
3660
  __name(pullAllWith, "pullAllWith");
3661
3661
  var pullAt = flatRest(function(array, indexes) {
3662
3662
  var length = array == null ? 0 : array.length, result2 = baseAt(array, indexes);
3663
- basePullAt(array, arrayMap(indexes, function(index2) {
3664
- return isIndex(index2, length) ? +index2 : index2;
3663
+ basePullAt(array, arrayMap(indexes, function(index) {
3664
+ return isIndex(index, length) ? +index : index;
3665
3665
  }).sort(compareAscending));
3666
3666
  return result2;
3667
3667
  });
@@ -3670,13 +3670,13 @@ lodash.exports;
3670
3670
  if (!(array && array.length)) {
3671
3671
  return result2;
3672
3672
  }
3673
- var index2 = -1, indexes = [], length = array.length;
3673
+ var index = -1, indexes = [], length = array.length;
3674
3674
  predicate = getIteratee(predicate, 3);
3675
- while (++index2 < length) {
3676
- var value = array[index2];
3677
- if (predicate(value, index2, array)) {
3675
+ while (++index < length) {
3676
+ var value = array[index];
3677
+ if (predicate(value, index, array)) {
3678
3678
  result2.push(value);
3679
- indexes.push(index2);
3679
+ indexes.push(index);
3680
3680
  }
3681
3681
  }
3682
3682
  basePullAt(array, indexes);
@@ -3713,9 +3713,9 @@ lodash.exports;
3713
3713
  function sortedIndexOf(array, value) {
3714
3714
  var length = array == null ? 0 : array.length;
3715
3715
  if (length) {
3716
- var index2 = baseSortedIndex(array, value);
3717
- if (index2 < length && eq(array[index2], value)) {
3718
- return index2;
3716
+ var index = baseSortedIndex(array, value);
3717
+ if (index < length && eq(array[index], value)) {
3718
+ return index;
3719
3719
  }
3720
3720
  }
3721
3721
  return -1;
@@ -3732,9 +3732,9 @@ lodash.exports;
3732
3732
  function sortedLastIndexOf(array, value) {
3733
3733
  var length = array == null ? 0 : array.length;
3734
3734
  if (length) {
3735
- var index2 = baseSortedIndex(array, value, true) - 1;
3736
- if (eq(array[index2], value)) {
3737
- return index2;
3735
+ var index = baseSortedIndex(array, value, true) - 1;
3736
+ if (eq(array[index], value)) {
3737
+ return index;
3738
3738
  }
3739
3739
  }
3740
3740
  return -1;
@@ -3818,8 +3818,8 @@ lodash.exports;
3818
3818
  return true;
3819
3819
  }
3820
3820
  });
3821
- return baseTimes(length, function(index2) {
3822
- return arrayMap(array, baseProperty(index2));
3821
+ return baseTimes(length, function(index) {
3822
+ return arrayMap(array, baseProperty(index));
3823
3823
  });
3824
3824
  }
3825
3825
  __name(unzip, "unzip");
@@ -4026,9 +4026,9 @@ lodash.exports;
4026
4026
  }
4027
4027
  __name(includes, "includes");
4028
4028
  var invokeMap = baseRest(function(collection, path, args) {
4029
- var index2 = -1, isFunc = typeof path == "function", result2 = isArrayLike(collection) ? Array2(collection.length) : [];
4029
+ var index = -1, isFunc = typeof path == "function", result2 = isArrayLike(collection) ? Array2(collection.length) : [];
4030
4030
  baseEach(collection, function(value) {
4031
- result2[++index2] = isFunc ? apply(path, value, args) : baseInvoke(value, path, args);
4031
+ result2[++index] = isFunc ? apply(path, value, args) : baseInvoke(value, path, args);
4032
4032
  });
4033
4033
  return result2;
4034
4034
  });
@@ -4089,11 +4089,11 @@ lodash.exports;
4089
4089
  return func(collection, n);
4090
4090
  }
4091
4091
  __name(sampleSize, "sampleSize");
4092
- function shuffle(collection) {
4092
+ function shuffle2(collection) {
4093
4093
  var func = isArray2(collection) ? arrayShuffle : baseShuffle;
4094
4094
  return func(collection);
4095
4095
  }
4096
- __name(shuffle, "shuffle");
4096
+ __name(shuffle2, "shuffle");
4097
4097
  function size(collection) {
4098
4098
  if (collection == null) {
4099
4099
  return 0;
@@ -4343,9 +4343,9 @@ lodash.exports;
4343
4343
  transforms = transforms.length == 1 && isArray2(transforms[0]) ? arrayMap(transforms[0], baseUnary(getIteratee())) : arrayMap(baseFlatten(transforms, 1), baseUnary(getIteratee()));
4344
4344
  var funcsLength = transforms.length;
4345
4345
  return baseRest(function(args) {
4346
- var index2 = -1, length = nativeMin(args.length, funcsLength);
4347
- while (++index2 < length) {
4348
- args[index2] = transforms[index2].call(this, args[index2]);
4346
+ var index = -1, length = nativeMin(args.length, funcsLength);
4347
+ while (++index < length) {
4348
+ args[index] = transforms[index].call(this, args[index]);
4349
4349
  }
4350
4350
  return apply(func, this, args);
4351
4351
  });
@@ -4464,7 +4464,7 @@ lodash.exports;
4464
4464
  return value === true || value === false || isObjectLike(value) && baseGetTag(value) == boolTag;
4465
4465
  }
4466
4466
  __name(isBoolean, "isBoolean");
4467
- var isBuffer2 = nativeIsBuffer || stubFalse;
4467
+ var isBuffer = nativeIsBuffer || stubFalse;
4468
4468
  var isDate = nodeIsDate ? baseUnary(nodeIsDate) : baseIsDate;
4469
4469
  function isElement(value) {
4470
4470
  return isObjectLike(value) && value.nodeType === 1 && !isPlainObject(value);
@@ -4474,7 +4474,7 @@ lodash.exports;
4474
4474
  if (value == null) {
4475
4475
  return true;
4476
4476
  }
4477
- if (isArrayLike(value) && (isArray2(value) || typeof value == "string" || typeof value.splice == "function" || isBuffer2(value) || isTypedArray(value) || isArguments(value))) {
4477
+ if (isArrayLike(value) && (isArray2(value) || typeof value == "string" || typeof value.splice == "function" || isBuffer(value) || isTypedArray(value) || isArguments(value))) {
4478
4478
  return !value.length;
4479
4479
  }
4480
4480
  var tag = getTag(value);
@@ -4709,14 +4709,14 @@ lodash.exports;
4709
4709
  __name(create, "create");
4710
4710
  var defaults = baseRest(function(object, sources) {
4711
4711
  object = Object2(object);
4712
- var index2 = -1;
4712
+ var index = -1;
4713
4713
  var length = sources.length;
4714
4714
  var guard = length > 2 ? sources[2] : undefined$1;
4715
4715
  if (guard && isIterateeCall(sources[0], sources[1], guard)) {
4716
4716
  length = 1;
4717
4717
  }
4718
- while (++index2 < length) {
4719
- var source2 = sources[index2];
4718
+ while (++index < length) {
4719
+ var source2 = sources[index];
4720
4720
  var props = keysIn(source2);
4721
4721
  var propsIndex = -1;
4722
4722
  var propsLength = props.length;
@@ -4871,15 +4871,15 @@ lodash.exports;
4871
4871
  __name(pickBy, "pickBy");
4872
4872
  function result(object, path, defaultValue) {
4873
4873
  path = castPath(path, object);
4874
- var index2 = -1, length = path.length;
4874
+ var index = -1, length = path.length;
4875
4875
  if (!length) {
4876
4876
  length = 1;
4877
4877
  object = undefined$1;
4878
4878
  }
4879
- while (++index2 < length) {
4880
- var value = object == null ? undefined$1 : object[toKey(path[index2])];
4879
+ while (++index < length) {
4880
+ var value = object == null ? undefined$1 : object[toKey(path[index])];
4881
4881
  if (value === undefined$1) {
4882
- index2 = length;
4882
+ index = length;
4883
4883
  value = defaultValue;
4884
4884
  }
4885
4885
  object = isFunction(value) ? value.call(object) : value;
@@ -4899,7 +4899,7 @@ lodash.exports;
4899
4899
  var toPairs = createToPairs(keys);
4900
4900
  var toPairsIn = createToPairs(keysIn);
4901
4901
  function transform(object, iteratee2, accumulator) {
4902
- var isArr = isArray2(object), isArrLike = isArr || isBuffer2(object) || isTypedArray(object);
4902
+ var isArr = isArray2(object), isArrLike = isArr || isBuffer(object) || isTypedArray(object);
4903
4903
  iteratee2 = getIteratee(iteratee2, 4);
4904
4904
  if (accumulator == null) {
4905
4905
  var Ctor = object && object.constructor;
@@ -4911,8 +4911,8 @@ lodash.exports;
4911
4911
  accumulator = {};
4912
4912
  }
4913
4913
  }
4914
- (isArrLike ? arrayEach : baseForOwn)(object, function(value, index2, object2) {
4915
- return iteratee2(accumulator, value, index2, object2);
4914
+ (isArrLike ? arrayEach : baseForOwn)(object, function(value, index, object2) {
4915
+ return iteratee2(accumulator, value, index, object2);
4916
4916
  });
4917
4917
  return accumulator;
4918
4918
  }
@@ -4966,7 +4966,7 @@ lodash.exports;
4966
4966
  return baseInRange(number, start, end);
4967
4967
  }
4968
4968
  __name(inRange, "inRange");
4969
- function random(lower, upper, floating) {
4969
+ function random2(lower, upper, floating) {
4970
4970
  if (floating && typeof floating != "boolean" && isIterateeCall(lower, upper, floating)) {
4971
4971
  upper = floating = undefined$1;
4972
4972
  }
@@ -5002,10 +5002,10 @@ lodash.exports;
5002
5002
  }
5003
5003
  return baseRandom(lower, upper);
5004
5004
  }
5005
- __name(random, "random");
5006
- var camelCase = createCompounder(function(result2, word, index2) {
5005
+ __name(random2, "random");
5006
+ var camelCase = createCompounder(function(result2, word, index) {
5007
5007
  word = word.toLowerCase();
5008
- return result2 + (index2 ? capitalize(word) : word);
5008
+ return result2 + (index ? capitalize(word) : word);
5009
5009
  });
5010
5010
  function capitalize(string) {
5011
5011
  return upperFirst(toString(string).toLowerCase());
@@ -5036,11 +5036,11 @@ lodash.exports;
5036
5036
  return string && reHasRegExpChar.test(string) ? string.replace(reRegExpChar, "\\$&") : string;
5037
5037
  }
5038
5038
  __name(escapeRegExp, "escapeRegExp");
5039
- var kebabCase = createCompounder(function(result2, word, index2) {
5040
- return result2 + (index2 ? "-" : "") + word.toLowerCase();
5039
+ var kebabCase = createCompounder(function(result2, word, index) {
5040
+ return result2 + (index ? "-" : "") + word.toLowerCase();
5041
5041
  });
5042
- var lowerCase = createCompounder(function(result2, word, index2) {
5043
- return result2 + (index2 ? " " : "") + word.toLowerCase();
5042
+ var lowerCase = createCompounder(function(result2, word, index) {
5043
+ return result2 + (index ? " " : "") + word.toLowerCase();
5044
5044
  });
5045
5045
  var lowerFirst = createCaseFirst("toLowerCase");
5046
5046
  function pad(string, length, chars) {
@@ -5091,8 +5091,8 @@ lodash.exports;
5091
5091
  return args.length < 3 ? string : string.replace(args[1], args[2]);
5092
5092
  }
5093
5093
  __name(replace, "replace");
5094
- var snakeCase = createCompounder(function(result2, word, index2) {
5095
- return result2 + (index2 ? "_" : "") + word.toLowerCase();
5094
+ var snakeCase = createCompounder(function(result2, word, index) {
5095
+ return result2 + (index ? "_" : "") + word.toLowerCase();
5096
5096
  });
5097
5097
  function split(string, separator, limit) {
5098
5098
  if (limit && typeof limit != "number" && isIterateeCall(string, separator, limit)) {
@@ -5112,8 +5112,8 @@ lodash.exports;
5112
5112
  return string.split(separator, limit);
5113
5113
  }
5114
5114
  __name(split, "split");
5115
- var startCase = createCompounder(function(result2, word, index2) {
5116
- return result2 + (index2 ? " " : "") + upperFirst(word);
5115
+ var startCase = createCompounder(function(result2, word, index) {
5116
+ return result2 + (index ? " " : "") + upperFirst(word);
5117
5117
  });
5118
5118
  function startsWith(string, target, position) {
5119
5119
  string = toString(string);
@@ -5130,7 +5130,7 @@ lodash.exports;
5130
5130
  string = toString(string);
5131
5131
  options = assignInWith({}, options, settings, customDefaultsAssignIn);
5132
5132
  var imports = assignInWith({}, options.imports, settings.imports, customDefaultsAssignIn), importsKeys = keys(imports), importsValues = baseValues(imports, importsKeys);
5133
- var isEscaping, isEvaluating, index2 = 0, interpolate = options.interpolate || reNoMatch, source2 = "__p += '";
5133
+ var isEscaping, isEvaluating, index = 0, interpolate = options.interpolate || reNoMatch, source2 = "__p += '";
5134
5134
  var reDelimiters = RegExp2(
5135
5135
  (options.escape || reNoMatch).source + "|" + interpolate.source + "|" + (interpolate === reInterpolate ? reEsTemplate : reNoMatch).source + "|" + (options.evaluate || reNoMatch).source + "|$",
5136
5136
  "g"
@@ -5138,7 +5138,7 @@ lodash.exports;
5138
5138
  var sourceURL = "//# sourceURL=" + (hasOwnProperty.call(options, "sourceURL") ? (options.sourceURL + "").replace(/\s/g, " ") : "lodash.templateSources[" + ++templateCounter + "]") + "\n";
5139
5139
  string.replace(reDelimiters, function(match, escapeValue, interpolateValue, esTemplateValue, evaluateValue, offset) {
5140
5140
  interpolateValue || (interpolateValue = esTemplateValue);
5141
- source2 += string.slice(index2, offset).replace(reUnescapedString, escapeStringChar);
5141
+ source2 += string.slice(index, offset).replace(reUnescapedString, escapeStringChar);
5142
5142
  if (escapeValue) {
5143
5143
  isEscaping = true;
5144
5144
  source2 += "' +\n__e(" + escapeValue + ") +\n'";
@@ -5150,7 +5150,7 @@ lodash.exports;
5150
5150
  if (interpolateValue) {
5151
5151
  source2 += "' +\n((__t = (" + interpolateValue + ")) == null ? '' : __t) +\n'";
5152
5152
  }
5153
- index2 = offset + match.length;
5153
+ index = offset + match.length;
5154
5154
  return match;
5155
5155
  });
5156
5156
  source2 += "';\n";
@@ -5256,9 +5256,9 @@ lodash.exports;
5256
5256
  result2 = result2.slice(0, newEnd === undefined$1 ? end : newEnd);
5257
5257
  }
5258
5258
  } else if (string.indexOf(baseToString(separator), end) != end) {
5259
- var index2 = result2.lastIndexOf(separator);
5260
- if (index2 > -1) {
5261
- result2 = result2.slice(0, index2);
5259
+ var index = result2.lastIndexOf(separator);
5260
+ if (index > -1) {
5261
+ result2 = result2.slice(0, index);
5262
5262
  }
5263
5263
  }
5264
5264
  return result2 + omission;
@@ -5269,8 +5269,8 @@ lodash.exports;
5269
5269
  return string && reHasEscapedHtml.test(string) ? string.replace(reEscapedHtml, unescapeHtmlChar) : string;
5270
5270
  }
5271
5271
  __name(unescape, "unescape");
5272
- var upperCase = createCompounder(function(result2, word, index2) {
5273
- return result2 + (index2 ? " " : "") + word.toUpperCase();
5272
+ var upperCase = createCompounder(function(result2, word, index) {
5273
+ return result2 + (index ? " " : "") + word.toUpperCase();
5274
5274
  });
5275
5275
  var upperFirst = createCaseFirst("toUpperCase");
5276
5276
  function words(string, pattern, guard) {
@@ -5305,9 +5305,9 @@ lodash.exports;
5305
5305
  return [toIteratee(pair[0]), pair[1]];
5306
5306
  });
5307
5307
  return baseRest(function(args) {
5308
- var index2 = -1;
5309
- while (++index2 < length) {
5310
- var pair = pairs[index2];
5308
+ var index = -1;
5309
+ while (++index < length) {
5310
+ var pair = pairs[index];
5311
5311
  if (apply(pair[0], this, args)) {
5312
5312
  return apply(pair[1], this, args);
5313
5313
  }
@@ -5442,12 +5442,12 @@ lodash.exports;
5442
5442
  if (n < 1 || n > MAX_SAFE_INTEGER) {
5443
5443
  return [];
5444
5444
  }
5445
- var index2 = MAX_ARRAY_LENGTH, length = nativeMin(n, MAX_ARRAY_LENGTH);
5445
+ var index = MAX_ARRAY_LENGTH, length = nativeMin(n, MAX_ARRAY_LENGTH);
5446
5446
  iteratee2 = getIteratee(iteratee2);
5447
5447
  n -= MAX_ARRAY_LENGTH;
5448
5448
  var result2 = baseTimes(length, iteratee2);
5449
- while (++index2 < n) {
5450
- iteratee2(index2);
5449
+ while (++index < n) {
5450
+ iteratee2(index);
5451
5451
  }
5452
5452
  return result2;
5453
5453
  }
@@ -5615,7 +5615,7 @@ lodash.exports;
5615
5615
  lodash2.sampleSize = sampleSize;
5616
5616
  lodash2.set = set;
5617
5617
  lodash2.setWith = setWith;
5618
- lodash2.shuffle = shuffle;
5618
+ lodash2.shuffle = shuffle2;
5619
5619
  lodash2.slice = slice;
5620
5620
  lodash2.sortBy = sortBy;
5621
5621
  lodash2.sortedUniq = sortedUniq;
@@ -5714,7 +5714,7 @@ lodash.exports;
5714
5714
  lodash2.isArrayLike = isArrayLike;
5715
5715
  lodash2.isArrayLikeObject = isArrayLikeObject;
5716
5716
  lodash2.isBoolean = isBoolean;
5717
- lodash2.isBuffer = isBuffer2;
5717
+ lodash2.isBuffer = isBuffer;
5718
5718
  lodash2.isDate = isDate;
5719
5719
  lodash2.isElement = isElement;
5720
5720
  lodash2.isEmpty = isEmpty;
@@ -5773,7 +5773,7 @@ lodash.exports;
5773
5773
  lodash2.padEnd = padEnd;
5774
5774
  lodash2.padStart = padStart;
5775
5775
  lodash2.parseInt = parseInt2;
5776
- lodash2.random = random;
5776
+ lodash2.random = random2;
5777
5777
  lodash2.reduce = reduce;
5778
5778
  lodash2.reduceRight = reduceRight;
5779
5779
  lodash2.repeat = repeat;
@@ -5830,10 +5830,10 @@ lodash.exports;
5830
5830
  arrayEach(["bind", "bindKey", "curry", "curryRight", "partial", "partialRight"], function(methodName) {
5831
5831
  lodash2[methodName].placeholder = lodash2;
5832
5832
  });
5833
- arrayEach(["drop", "take"], function(methodName, index2) {
5833
+ arrayEach(["drop", "take"], function(methodName, index) {
5834
5834
  LazyWrapper.prototype[methodName] = function(n) {
5835
5835
  n = n === undefined$1 ? 1 : nativeMax(toInteger(n), 0);
5836
- var result2 = this.__filtered__ && !index2 ? new LazyWrapper(this) : this.clone();
5836
+ var result2 = this.__filtered__ && !index ? new LazyWrapper(this) : this.clone();
5837
5837
  if (result2.__filtered__) {
5838
5838
  result2.__takeCount__ = nativeMin(n, result2.__takeCount__);
5839
5839
  } else {
@@ -5848,8 +5848,8 @@ lodash.exports;
5848
5848
  return this.reverse()[methodName](n).reverse();
5849
5849
  };
5850
5850
  });
5851
- arrayEach(["filter", "map", "takeWhile"], function(methodName, index2) {
5852
- var type = index2 + 1, isFilter = type == LAZY_FILTER_FLAG || type == LAZY_WHILE_FLAG;
5851
+ arrayEach(["filter", "map", "takeWhile"], function(methodName, index) {
5852
+ var type = index + 1, isFilter = type == LAZY_FILTER_FLAG || type == LAZY_WHILE_FLAG;
5853
5853
  LazyWrapper.prototype[methodName] = function(iteratee2) {
5854
5854
  var result2 = this.clone();
5855
5855
  result2.__iteratees__.push({
@@ -5860,14 +5860,14 @@ lodash.exports;
5860
5860
  return result2;
5861
5861
  };
5862
5862
  });
5863
- arrayEach(["head", "last"], function(methodName, index2) {
5864
- var takeName = "take" + (index2 ? "Right" : "");
5863
+ arrayEach(["head", "last"], function(methodName, index) {
5864
+ var takeName = "take" + (index ? "Right" : "");
5865
5865
  LazyWrapper.prototype[methodName] = function() {
5866
5866
  return this[takeName](1).value()[0];
5867
5867
  };
5868
5868
  });
5869
- arrayEach(["initial", "tail"], function(methodName, index2) {
5870
- var dropName = "drop" + (index2 ? "" : "Right");
5869
+ arrayEach(["initial", "tail"], function(methodName, index) {
5870
+ var dropName = "drop" + (index ? "" : "Right");
5871
5871
  LazyWrapper.prototype[methodName] = function() {
5872
5872
  return this.__filtered__ ? new LazyWrapper(this) : this[dropName](1);
5873
5873
  };
@@ -6556,7 +6556,7 @@ function trimRangeByAnotherRange(rangeToBeTrimmed, trimmingRange, sequenceLength
6556
6556
  rangeToBeTrimmed,
6557
6557
  sequenceLength
6558
6558
  );
6559
- splitRangesToBeTrimmed.forEach(function(nonCircularRangeToBeTrimmed, index2) {
6559
+ splitRangesToBeTrimmed.forEach(function(nonCircularRangeToBeTrimmed, index) {
6560
6560
  overlaps.forEach(function(overlap) {
6561
6561
  if (nonCircularRangeToBeTrimmed) {
6562
6562
  nonCircularRangeToBeTrimmed = trimNonCicularRangeByAnotherNonCircularRange(
@@ -6565,7 +6565,7 @@ function trimRangeByAnotherRange(rangeToBeTrimmed, trimmingRange, sequenceLength
6565
6565
  );
6566
6566
  }
6567
6567
  });
6568
- splitRangesToBeTrimmed[index2] = nonCircularRangeToBeTrimmed;
6568
+ splitRangesToBeTrimmed[index] = nonCircularRangeToBeTrimmed;
6569
6569
  });
6570
6570
  const outputSplitRanges = splitRangesToBeTrimmed.filter(function(trimmedRange) {
6571
6571
  if (trimmedRange) {
@@ -6720,12 +6720,12 @@ function provideInclusiveOptions(funToWrap) {
6720
6720
  const args = Array.prototype.slice.call(arguments);
6721
6721
  const options = args[args.length - 1];
6722
6722
  if (options && (options.inclusive1BasedEnd || options.inclusive1BasedStart)) {
6723
- args.forEach(function(arg, index2) {
6723
+ args.forEach(function(arg, index) {
6724
6724
  if (arg && arg.start > -1 && options.inclusive1BasedStart) {
6725
- args[index2] = lodashExports.assign(arg, { start: arg.start - 1 });
6725
+ args[index] = lodashExports.assign(arg, { start: arg.start - 1 });
6726
6726
  }
6727
6727
  if (arg && arg.end > -1 && options.inclusive1BasedEnd) {
6728
- args[index2] = lodashExports.assign(arg, { end: arg.end - 1 });
6728
+ args[index] = lodashExports.assign(arg, { end: arg.end - 1 });
6729
6729
  }
6730
6730
  });
6731
6731
  }
@@ -6755,7 +6755,7 @@ function getRangeLength$1(range, rangeMax) {
6755
6755
  }
6756
6756
  __name(getRangeLength$1, "getRangeLength$1");
6757
6757
  function isRangeWithinRange(rangeToCheck, containingRange, maxLength) {
6758
- let ranges = trimRangeByAnotherRange(
6758
+ const ranges = trimRangeByAnotherRange(
6759
6759
  rangeToCheck,
6760
6760
  containingRange,
6761
6761
  maxLength
@@ -6920,14 +6920,14 @@ function getShortestDistanceBetweenTwoPositions(position1, position2, sequenceLe
6920
6920
  __name(getShortestDistanceBetweenTwoPositions, "getShortestDistanceBetweenTwoPositions");
6921
6921
  function getYOffsetForPotentiallyCircularRange(range, YOffsetLevelsWithRanges, assignYOffsetToRange) {
6922
6922
  let yOffset = [];
6923
- const openYOffsetFound = YOffsetLevelsWithRanges.some(function(rangesAlreadyAddedToYOffset, index2) {
6923
+ const openYOffsetFound = YOffsetLevelsWithRanges.some(function(rangesAlreadyAddedToYOffset, index) {
6924
6924
  const rangeBlocked = rangesAlreadyAddedToYOffset.some(function(comparisonRange) {
6925
6925
  return checkIfPotentiallyCircularRangesOverlap(range, comparisonRange);
6926
6926
  });
6927
6927
  if (!rangeBlocked) {
6928
- yOffset = index2;
6928
+ yOffset = index;
6929
6929
  if (assignYOffsetToRange)
6930
- range.yOffset = index2;
6930
+ range.yOffset = index;
6931
6931
  rangesAlreadyAddedToYOffset.push(range);
6932
6932
  return true;
6933
6933
  }
@@ -7239,9 +7239,9 @@ function convertApELikeRegexToRegex(regString = "") {
7239
7239
  let isGroupClosed = true;
7240
7240
  let closingBraceHit;
7241
7241
  const groups = [];
7242
- for (let index2 = 0; index2 < newstr.length; index2++) {
7243
- const char = newstr[index2];
7244
- const nextChar = newstr[index2 + 1];
7242
+ for (let index = 0; index < newstr.length; index++) {
7243
+ const char = newstr[index];
7244
+ const nextChar = newstr[index + 1];
7245
7245
  if (char === "[") {
7246
7246
  isGroupClosed = false;
7247
7247
  } else if (char === "]" || closingBraceHit) {
@@ -7419,151 +7419,232 @@ const getFeatureToColorMap = /* @__PURE__ */ __name(({ includeHidden } = {}) =>
7419
7419
  const getFeatureTypes = /* @__PURE__ */ __name(({ includeHidden } = {}) => lodashExports.filter(getMergedFeatureMap(), (f) => includeHidden ? true : !f.isHidden).map(
7420
7420
  (f) => f.name
7421
7421
  ), "getFeatureTypes");
7422
- var MACHINE_ID = Math.floor(Math.random() * 16777215);
7423
- var index = ObjectID.index = parseInt(Math.random() * 16777215, 10);
7424
- var pid = (typeof process === "undefined" || typeof process.pid !== "number" ? Math.floor(Math.random() * 1e5) : process.pid) % 65535;
7425
- var isBuffer = /* @__PURE__ */ __name(function(obj) {
7426
- return !!(obj != null && obj.constructor && typeof obj.constructor.isBuffer === "function" && obj.constructor.isBuffer(obj));
7427
- }, "isBuffer");
7428
- function ObjectID(arg) {
7429
- if (!(this instanceof ObjectID))
7430
- return new ObjectID(arg);
7431
- if (arg && (arg instanceof ObjectID || arg._bsontype === "ObjectID"))
7432
- return arg;
7433
- var buf;
7434
- if (isBuffer(arg) || Array.isArray(arg) && arg.length === 12) {
7435
- buf = Array.prototype.slice.call(arg);
7436
- } else if (typeof arg === "string") {
7437
- if (arg.length !== 12 && !ObjectID.isValid(arg))
7438
- throw new Error("Argument passed in must be a single String of 12 bytes or a string of 24 hex characters");
7439
- buf = buffer(arg);
7440
- } else if (/number|undefined/.test(typeof arg)) {
7441
- buf = buffer(generate(arg));
7442
- }
7443
- Object.defineProperty(this, "id", {
7444
- enumerable: true,
7445
- get: function() {
7446
- return String.fromCharCode.apply(this, buf);
7447
- }
7448
- });
7449
- Object.defineProperty(this, "str", {
7450
- get: function() {
7451
- return buf.map(hex.bind(this, 2)).join("");
7452
- }
7453
- });
7422
+ var lib = { exports: {} };
7423
+ var seed = 1;
7424
+ function getNextValue() {
7425
+ seed = (seed * 9301 + 49297) % 233280;
7426
+ return seed / 233280;
7454
7427
  }
7455
- __name(ObjectID, "ObjectID");
7456
- var objectid = ObjectID;
7457
- ObjectID.generate = generate;
7458
- ObjectID.default = ObjectID;
7459
- ObjectID.createFromTime = function(time) {
7460
- time = parseInt(time, 10) % 4294967295;
7461
- return new ObjectID(hex(8, time) + "0000000000000000");
7462
- };
7463
- ObjectID.createFromHexString = function(hexString) {
7464
- if (!ObjectID.isValid(hexString))
7465
- throw new Error("Invalid ObjectID hex string");
7466
- return new ObjectID(hexString);
7467
- };
7468
- ObjectID.isValid = function(objectid2) {
7469
- if (!objectid2 || typeof objectid2 !== "string" && (typeof objectid2 !== "object" || Array.isArray(objectid2) || typeof objectid2.toString !== "function"))
7470
- return false;
7471
- return /^[0-9A-F]{24}$/i.test(objectid2.toString());
7428
+ __name(getNextValue, "getNextValue");
7429
+ function setSeed$1(_seed_) {
7430
+ seed = _seed_;
7431
+ }
7432
+ __name(setSeed$1, "setSeed$1");
7433
+ var randomFromSeed$1 = {
7434
+ nextValue: getNextValue,
7435
+ seed: setSeed$1
7472
7436
  };
7473
- ObjectID.setMachineID = function(arg) {
7474
- var machineID;
7475
- if (typeof arg === "string") {
7476
- machineID = parseInt(arg, 16);
7477
- if (isNaN(machineID)) {
7478
- arg = ("000000" + arg).substr(-7, 6);
7479
- machineID = "";
7480
- for (var i = 0; i < 6; i++) {
7481
- machineID += arg.charCodeAt(i);
7482
- }
7437
+ var randomFromSeed = randomFromSeed$1;
7438
+ var ORIGINAL = "0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ_-";
7439
+ var alphabet$2;
7440
+ var previousSeed;
7441
+ var shuffled;
7442
+ function reset() {
7443
+ shuffled = false;
7444
+ }
7445
+ __name(reset, "reset");
7446
+ function setCharacters(_alphabet_) {
7447
+ if (!_alphabet_) {
7448
+ if (alphabet$2 !== ORIGINAL) {
7449
+ alphabet$2 = ORIGINAL;
7450
+ reset();
7483
7451
  }
7484
- } else if (/number|undefined/.test(typeof arg)) {
7485
- machineID = arg | 0;
7452
+ return;
7486
7453
  }
7487
- MACHINE_ID = machineID & 16777215;
7488
- };
7489
- ObjectID.getMachineID = function() {
7490
- return MACHINE_ID;
7491
- };
7492
- ObjectID.prototype = {
7493
- _bsontype: "ObjectID",
7494
- constructor: ObjectID,
7495
- /**
7496
- * Return the ObjectID id as a 24 byte hex string representation
7497
- *
7498
- * @return {String} return the 24 byte hex string representation.
7499
- * @api public
7500
- */
7501
- toHexString: function() {
7502
- return this.str;
7503
- },
7504
- /**
7505
- * Compares the equality of this ObjectID with `otherID`.
7506
- *
7507
- * @param {Object} other ObjectID instance to compare against.
7508
- * @return {Boolean} the result of comparing two ObjectID's
7509
- * @api public
7510
- */
7511
- equals: function(other) {
7512
- return !!other && this.str === other.toString();
7513
- },
7514
- /**
7515
- * Returns the generation date (accurate up to the second) that this ID was generated.
7516
- *
7517
- * @return {Date} the generation date
7518
- * @api public
7519
- */
7520
- getTimestamp: function() {
7521
- return new Date(parseInt(this.str.substr(0, 8), 16) * 1e3);
7454
+ if (_alphabet_ === alphabet$2) {
7455
+ return;
7522
7456
  }
7523
- };
7524
- function next() {
7525
- return index = (index + 1) % 16777215;
7457
+ if (_alphabet_.length !== ORIGINAL.length) {
7458
+ throw new Error("Custom alphabet for shortid must be " + ORIGINAL.length + " unique characters. You submitted " + _alphabet_.length + " characters: " + _alphabet_);
7459
+ }
7460
+ var unique = _alphabet_.split("").filter(function(item, ind, arr) {
7461
+ return ind !== arr.lastIndexOf(item);
7462
+ });
7463
+ if (unique.length) {
7464
+ throw new Error("Custom alphabet for shortid must be " + ORIGINAL.length + " unique characters. These characters were not unique: " + unique.join(", "));
7465
+ }
7466
+ alphabet$2 = _alphabet_;
7467
+ reset();
7526
7468
  }
7527
- __name(next, "next");
7528
- function generate(time) {
7529
- if (typeof time !== "number")
7530
- time = Date.now() / 1e3;
7531
- time = parseInt(time, 10) % 4294967295;
7532
- return hex(8, time) + hex(6, MACHINE_ID) + hex(4, pid) + hex(6, next());
7469
+ __name(setCharacters, "setCharacters");
7470
+ function characters(_alphabet_) {
7471
+ setCharacters(_alphabet_);
7472
+ return alphabet$2;
7533
7473
  }
7534
- __name(generate, "generate");
7535
- function hex(length, n) {
7536
- n = n.toString(16);
7537
- return n.length === length ? n : "00000000".substring(n.length, length) + n;
7474
+ __name(characters, "characters");
7475
+ function setSeed(seed2) {
7476
+ randomFromSeed.seed(seed2);
7477
+ if (previousSeed !== seed2) {
7478
+ reset();
7479
+ previousSeed = seed2;
7480
+ }
7538
7481
  }
7539
- __name(hex, "hex");
7540
- function buffer(str) {
7541
- var i = 0, out = [];
7542
- if (str.length === 24)
7543
- for (; i < 24; out.push(parseInt(str[i] + str[i + 1], 16)), i += 2)
7544
- ;
7545
- else if (str.length === 12)
7546
- for (; i < 12; out.push(str.charCodeAt(i)), i++)
7547
- ;
7548
- return out;
7482
+ __name(setSeed, "setSeed");
7483
+ function shuffle() {
7484
+ if (!alphabet$2) {
7485
+ setCharacters(ORIGINAL);
7486
+ }
7487
+ var sourceArray = alphabet$2.split("");
7488
+ var targetArray = [];
7489
+ var r = randomFromSeed.nextValue();
7490
+ var characterIndex;
7491
+ while (sourceArray.length > 0) {
7492
+ r = randomFromSeed.nextValue();
7493
+ characterIndex = Math.floor(r * sourceArray.length);
7494
+ targetArray.push(sourceArray.splice(characterIndex, 1)[0]);
7495
+ }
7496
+ return targetArray.join("");
7497
+ }
7498
+ __name(shuffle, "shuffle");
7499
+ function getShuffled() {
7500
+ if (shuffled) {
7501
+ return shuffled;
7502
+ }
7503
+ shuffled = shuffle();
7504
+ return shuffled;
7549
7505
  }
7550
- __name(buffer, "buffer");
7551
- var inspect = Symbol && Symbol.for("nodejs.util.inspect.custom") || "inspect";
7552
- ObjectID.prototype[inspect] = function() {
7553
- return "ObjectID(" + this + ")";
7506
+ __name(getShuffled, "getShuffled");
7507
+ function lookup(index) {
7508
+ var alphabetShuffled = getShuffled();
7509
+ return alphabetShuffled[index];
7510
+ }
7511
+ __name(lookup, "lookup");
7512
+ function get$2() {
7513
+ return alphabet$2 || ORIGINAL;
7514
+ }
7515
+ __name(get$2, "get$2");
7516
+ var alphabet_1 = {
7517
+ get: get$2,
7518
+ characters,
7519
+ seed: setSeed,
7520
+ lookup,
7521
+ shuffled: getShuffled
7554
7522
  };
7555
- ObjectID.prototype.toJSON = ObjectID.prototype.toHexString;
7556
- ObjectID.prototype.toString = ObjectID.prototype.toHexString;
7557
- const bsonObjectId = /* @__PURE__ */ getDefaultExportFromCjs(objectid);
7523
+ var crypto = typeof window === "object" && (window.crypto || window.msCrypto);
7524
+ var randomByte;
7525
+ if (!crypto || !crypto.getRandomValues) {
7526
+ randomByte = /* @__PURE__ */ __name(function(size) {
7527
+ var bytes = [];
7528
+ for (var i = 0; i < size; i++) {
7529
+ bytes.push(Math.floor(Math.random() * 256));
7530
+ }
7531
+ return bytes;
7532
+ }, "randomByte");
7533
+ } else {
7534
+ randomByte = /* @__PURE__ */ __name(function(size) {
7535
+ return crypto.getRandomValues(new Uint8Array(size));
7536
+ }, "randomByte");
7537
+ }
7538
+ var randomByteBrowser = randomByte;
7539
+ var format_browser = /* @__PURE__ */ __name(function(random2, alphabet2, size) {
7540
+ var mask = (2 << Math.log(alphabet2.length - 1) / Math.LN2) - 1;
7541
+ var step = -~(1.6 * mask * size / alphabet2.length);
7542
+ var id = "";
7543
+ while (true) {
7544
+ var bytes = random2(step);
7545
+ var i = step;
7546
+ while (i--) {
7547
+ id += alphabet2[bytes[i] & mask] || "";
7548
+ if (id.length === +size)
7549
+ return id;
7550
+ }
7551
+ }
7552
+ }, "format_browser");
7553
+ var alphabet$1 = alphabet_1;
7554
+ var random = randomByteBrowser;
7555
+ var format = format_browser;
7556
+ function generate$1(number) {
7557
+ var loopCounter = 0;
7558
+ var done;
7559
+ var str = "";
7560
+ while (!done) {
7561
+ str = str + format(random, alphabet$1.get(), 1);
7562
+ done = number < Math.pow(16, loopCounter + 1);
7563
+ loopCounter++;
7564
+ }
7565
+ return str;
7566
+ }
7567
+ __name(generate$1, "generate$1");
7568
+ var generate_1 = generate$1;
7569
+ var generate = generate_1;
7570
+ var REDUCE_TIME = 1567752802062;
7571
+ var version = 7;
7572
+ var counter;
7573
+ var previousSeconds;
7574
+ function build(clusterWorkerId) {
7575
+ var str = "";
7576
+ var seconds = Math.floor((Date.now() - REDUCE_TIME) * 1e-3);
7577
+ if (seconds === previousSeconds) {
7578
+ counter++;
7579
+ } else {
7580
+ counter = 0;
7581
+ previousSeconds = seconds;
7582
+ }
7583
+ str = str + generate(version);
7584
+ str = str + generate(clusterWorkerId);
7585
+ if (counter > 0) {
7586
+ str = str + generate(counter);
7587
+ }
7588
+ str = str + generate(seconds);
7589
+ return str;
7590
+ }
7591
+ __name(build, "build");
7592
+ var build_1 = build;
7593
+ var alphabet = alphabet_1;
7594
+ function isShortId(id) {
7595
+ if (!id || typeof id !== "string" || id.length < 6) {
7596
+ return false;
7597
+ }
7598
+ var nonAlphabetic = new RegExp("[^" + alphabet.get().replace(/[|\\{}()[\]^$+*?.-]/g, "\\$&") + "]");
7599
+ return !nonAlphabetic.test(id);
7600
+ }
7601
+ __name(isShortId, "isShortId");
7602
+ var isValid = isShortId;
7603
+ (function(module) {
7604
+ var alphabet2 = alphabet_1;
7605
+ var build2 = build_1;
7606
+ var isValid$1 = isValid;
7607
+ var clusterWorkerId = 0;
7608
+ function seed2(seedValue) {
7609
+ alphabet2.seed(seedValue);
7610
+ return module.exports;
7611
+ }
7612
+ __name(seed2, "seed");
7613
+ function worker(workerId) {
7614
+ clusterWorkerId = workerId;
7615
+ return module.exports;
7616
+ }
7617
+ __name(worker, "worker");
7618
+ function characters2(newCharacters) {
7619
+ if (newCharacters !== void 0) {
7620
+ alphabet2.characters(newCharacters);
7621
+ }
7622
+ return alphabet2.shuffled();
7623
+ }
7624
+ __name(characters2, "characters");
7625
+ function generate2() {
7626
+ return build2(clusterWorkerId);
7627
+ }
7628
+ __name(generate2, "generate");
7629
+ module.exports = generate2;
7630
+ module.exports.generate = generate2;
7631
+ module.exports.seed = seed2;
7632
+ module.exports.worker = worker;
7633
+ module.exports.characters = characters2;
7634
+ module.exports.isValid = isValid$1;
7635
+ })(lib);
7636
+ var libExports = lib.exports;
7637
+ var shortid = libExports;
7638
+ const shortid$1 = /* @__PURE__ */ getDefaultExportFromCjs(shortid);
7558
7639
  function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme) {
7559
7640
  if (restrictionEnzyme.forwardRegex.length === 0 || restrictionEnzyme.reverseRegex.length === 0) {
7560
- let returnArray = [];
7641
+ const returnArray = [];
7561
7642
  returnArray.error = "Cannot cut sequence. Enzyme restriction site must be at least 1 bp long.";
7562
7643
  return returnArray;
7563
7644
  }
7564
- let forwardRegExpPattern = new RegExp(restrictionEnzyme.forwardRegex, "ig");
7565
- let sequence = pSequence;
7566
- let cutsitesForward = cutSequence(
7645
+ const forwardRegExpPattern = new RegExp(restrictionEnzyme.forwardRegex, "ig");
7646
+ const sequence = pSequence;
7647
+ const cutsitesForward = cutSequence(
7567
7648
  forwardRegExpPattern,
7568
7649
  restrictionEnzyme,
7569
7650
  sequence,
@@ -7571,7 +7652,7 @@ function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme)
7571
7652
  );
7572
7653
  let cutsitesReverse = [];
7573
7654
  if (restrictionEnzyme.forwardRegex !== restrictionEnzyme.reverseRegex) {
7574
- let revSequence = getReverseComplementSequenceString(sequence);
7655
+ const revSequence = getReverseComplementSequenceString(sequence);
7575
7656
  cutsitesReverse = cutSequence(
7576
7657
  forwardRegExpPattern,
7577
7658
  restrictionEnzyme,
@@ -7639,20 +7720,20 @@ function cutSequenceByRestrictionEnzyme(pSequence, circular, restrictionEnzyme)
7639
7720
  }
7640
7721
  __name(cutSequenceByRestrictionEnzyme, "cutSequenceByRestrictionEnzyme");
7641
7722
  function cutSequence(forwardRegExpPattern, restrictionEnzyme, sequence, circular) {
7642
- let restrictionCutSites = [];
7723
+ const restrictionCutSites = [];
7643
7724
  let restrictionCutSite;
7644
- let recognitionSiteLength = restrictionEnzyme.site.length;
7645
- let originalSequence = sequence;
7646
- let originalSequenceLength = sequence.length;
7725
+ const recognitionSiteLength = restrictionEnzyme.site.length;
7726
+ const originalSequence = sequence;
7727
+ const originalSequenceLength = sequence.length;
7647
7728
  if (circular) {
7648
7729
  sequence += sequence;
7649
7730
  }
7650
- let currentSequenceLength = sequence.length;
7731
+ const currentSequenceLength = sequence.length;
7651
7732
  let matchIndex = sequence.search(forwardRegExpPattern);
7652
7733
  let startIndex = 0;
7653
7734
  let subSequence = sequence;
7654
7735
  while (matchIndex !== -1) {
7655
- let recognitionSiteRange = {};
7736
+ const recognitionSiteRange = {};
7656
7737
  let start;
7657
7738
  let end;
7658
7739
  let upstreamTopSnip = null;
@@ -7760,9 +7841,9 @@ function cutSequence(forwardRegExpPattern, restrictionEnzyme, sequence, circular
7760
7841
  )
7761
7842
  };
7762
7843
  }
7763
- let overhangBps = getSequenceWithinRange(cutRange, originalSequence);
7844
+ const overhangBps = getSequenceWithinRange(cutRange, originalSequence);
7764
7845
  restrictionCutSite = {
7765
- id: bsonObjectId().str,
7846
+ id: shortid$1(),
7766
7847
  start,
7767
7848
  end,
7768
7849
  topSnipPosition,
@@ -7820,7 +7901,7 @@ function computeDigestFragments({
7820
7901
  });
7821
7902
  if (!circular && cutsites.length) {
7822
7903
  sortedCutsites.push({
7823
- id: "seqTerm_" + bsonObjectId().str,
7904
+ id: "seqTerm_" + shortid$1(),
7824
7905
  start: 0,
7825
7906
  end: 0,
7826
7907
  overhangBps: "",
@@ -7841,19 +7922,19 @@ function computeDigestFragments({
7841
7922
  }
7842
7923
  });
7843
7924
  }
7844
- sortedCutsites.forEach((cutsite1, index2) => {
7925
+ sortedCutsites.forEach((cutsite1, index) => {
7845
7926
  if (computePartialDigest && !computePartialDigestDisabled) {
7846
- sortedCutsites.forEach((cs, index22) => {
7847
- if (index22 === index2 + 1 || index22 === 0) {
7927
+ sortedCutsites.forEach((cs, index2) => {
7928
+ if (index2 === index + 1 || index2 === 0) {
7848
7929
  return;
7849
7930
  }
7850
- pairs.push([cutsite1, sortedCutsites[index22]]);
7931
+ pairs.push([cutsite1, sortedCutsites[index2]]);
7851
7932
  });
7852
7933
  }
7853
7934
  if (!computeDigestDisabled) {
7854
7935
  pairs.push([
7855
7936
  cutsite1,
7856
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
7937
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
7857
7938
  ]);
7858
7939
  }
7859
7940
  });
@@ -8332,11 +8413,11 @@ var diffMatchPatch = { exports: {} };
8332
8413
  }
8333
8414
  var dmp2 = this;
8334
8415
  function diff_halfMatchI_(longtext2, shorttext2, i) {
8335
- var seed = longtext2.substring(i, i + Math.floor(longtext2.length / 4));
8416
+ var seed2 = longtext2.substring(i, i + Math.floor(longtext2.length / 4));
8336
8417
  var j = -1;
8337
8418
  var best_common = "";
8338
8419
  var best_longtext_a, best_longtext_b, best_shorttext_a, best_shorttext_b;
8339
- while ((j = shorttext2.indexOf(seed, j + 1)) != -1) {
8420
+ while ((j = shorttext2.indexOf(seed2, j + 1)) != -1) {
8340
8421
  var prefixLength = dmp2.diff_commonPrefix(
8341
8422
  longtext2.substring(i),
8342
8423
  shorttext2.substring(j)
@@ -10540,30 +10621,30 @@ var browser = {
10540
10621
  stderr: false
10541
10622
  };
10542
10623
  const stringReplaceAll$1 = /* @__PURE__ */ __name((string, substring, replacer) => {
10543
- let index2 = string.indexOf(substring);
10544
- if (index2 === -1) {
10624
+ let index = string.indexOf(substring);
10625
+ if (index === -1) {
10545
10626
  return string;
10546
10627
  }
10547
10628
  const substringLength = substring.length;
10548
10629
  let endIndex = 0;
10549
10630
  let returnValue = "";
10550
10631
  do {
10551
- returnValue += string.substr(endIndex, index2 - endIndex) + substring + replacer;
10552
- endIndex = index2 + substringLength;
10553
- index2 = string.indexOf(substring, endIndex);
10554
- } while (index2 !== -1);
10632
+ returnValue += string.substr(endIndex, index - endIndex) + substring + replacer;
10633
+ endIndex = index + substringLength;
10634
+ index = string.indexOf(substring, endIndex);
10635
+ } while (index !== -1);
10555
10636
  returnValue += string.substr(endIndex);
10556
10637
  return returnValue;
10557
10638
  }, "stringReplaceAll$1");
10558
- const stringEncaseCRLFWithFirstIndex$1 = /* @__PURE__ */ __name((string, prefix, postfix, index2) => {
10639
+ const stringEncaseCRLFWithFirstIndex$1 = /* @__PURE__ */ __name((string, prefix, postfix, index) => {
10559
10640
  let endIndex = 0;
10560
10641
  let returnValue = "";
10561
10642
  do {
10562
- const gotCR = string[index2 - 1] === "\r";
10563
- returnValue += string.substr(endIndex, (gotCR ? index2 - 1 : index2) - endIndex) + prefix + (gotCR ? "\r\n" : "\n") + postfix;
10564
- endIndex = index2 + 1;
10565
- index2 = string.indexOf("\n", endIndex);
10566
- } while (index2 !== -1);
10643
+ const gotCR = string[index - 1] === "\r";
10644
+ returnValue += string.substr(endIndex, (gotCR ? index - 1 : index) - endIndex) + prefix + (gotCR ? "\r\n" : "\n") + postfix;
10645
+ endIndex = index + 1;
10646
+ index = string.indexOf("\n", endIndex);
10647
+ } while (index !== -1);
10567
10648
  returnValue += string.substr(endIndex);
10568
10649
  return returnValue;
10569
10650
  }, "stringEncaseCRLFWithFirstIndex$1");
@@ -10974,7 +11055,7 @@ var Processor = function() {
10974
11055
  }, "pipe")
10975
11056
  }, {
10976
11057
  key: "process",
10977
- value: /* @__PURE__ */ __name(function process2(input, pipe) {
11058
+ value: /* @__PURE__ */ __name(function process(input, pipe) {
10978
11059
  var context = input;
10979
11060
  context.options = this.options();
10980
11061
  var nextPipe = pipe || input.pipe || "default";
@@ -11013,15 +11094,15 @@ var Pipe = function() {
11013
11094
  __name(Pipe2, "Pipe");
11014
11095
  createClass(Pipe2, [{
11015
11096
  key: "process",
11016
- value: /* @__PURE__ */ __name(function process2(input) {
11097
+ value: /* @__PURE__ */ __name(function process(input) {
11017
11098
  if (!this.processor) {
11018
11099
  throw new Error("add this pipe to a processor before using it");
11019
11100
  }
11020
11101
  var debug = this.debug;
11021
11102
  var length = this.filters.length;
11022
11103
  var context = input;
11023
- for (var index2 = 0; index2 < length; index2++) {
11024
- var filter = this.filters[index2];
11104
+ for (var index = 0; index < length; index++) {
11105
+ var filter = this.filters[index];
11025
11106
  if (debug) {
11026
11107
  this.log("filter: " + filter.filterName);
11027
11108
  }
@@ -11060,10 +11141,10 @@ var Pipe = function() {
11060
11141
  if (!filterName) {
11061
11142
  throw new Error("a filter name is required");
11062
11143
  }
11063
- for (var index2 = 0; index2 < this.filters.length; index2++) {
11064
- var filter = this.filters[index2];
11144
+ for (var index = 0; index < this.filters.length; index++) {
11145
+ var filter = this.filters[index];
11065
11146
  if (filter.filterName === filterName) {
11066
- return index2;
11147
+ return index;
11067
11148
  }
11068
11149
  }
11069
11150
  throw new Error("filter not found: " + filterName);
@@ -11078,44 +11159,44 @@ var Pipe = function() {
11078
11159
  }, {
11079
11160
  key: "after",
11080
11161
  value: /* @__PURE__ */ __name(function after(filterName) {
11081
- var index2 = this.indexOf(filterName);
11162
+ var index = this.indexOf(filterName);
11082
11163
  var params = Array.prototype.slice.call(arguments, 1);
11083
11164
  if (!params.length) {
11084
11165
  throw new Error("a filter is required");
11085
11166
  }
11086
- params.unshift(index2 + 1, 0);
11167
+ params.unshift(index + 1, 0);
11087
11168
  Array.prototype.splice.apply(this.filters, params);
11088
11169
  return this;
11089
11170
  }, "after")
11090
11171
  }, {
11091
11172
  key: "before",
11092
11173
  value: /* @__PURE__ */ __name(function before(filterName) {
11093
- var index2 = this.indexOf(filterName);
11174
+ var index = this.indexOf(filterName);
11094
11175
  var params = Array.prototype.slice.call(arguments, 1);
11095
11176
  if (!params.length) {
11096
11177
  throw new Error("a filter is required");
11097
11178
  }
11098
- params.unshift(index2, 0);
11179
+ params.unshift(index, 0);
11099
11180
  Array.prototype.splice.apply(this.filters, params);
11100
11181
  return this;
11101
11182
  }, "before")
11102
11183
  }, {
11103
11184
  key: "replace",
11104
11185
  value: /* @__PURE__ */ __name(function replace(filterName) {
11105
- var index2 = this.indexOf(filterName);
11186
+ var index = this.indexOf(filterName);
11106
11187
  var params = Array.prototype.slice.call(arguments, 1);
11107
11188
  if (!params.length) {
11108
11189
  throw new Error("a filter is required");
11109
11190
  }
11110
- params.unshift(index2, 1);
11191
+ params.unshift(index, 1);
11111
11192
  Array.prototype.splice.apply(this.filters, params);
11112
11193
  return this;
11113
11194
  }, "replace")
11114
11195
  }, {
11115
11196
  key: "remove",
11116
11197
  value: /* @__PURE__ */ __name(function remove(filterName) {
11117
- var index2 = this.indexOf(filterName);
11118
- this.filters.splice(index2, 1);
11198
+ var index = this.indexOf(filterName);
11199
+ this.filters.splice(index, 1);
11119
11200
  return this;
11120
11201
  }, "remove")
11121
11202
  }, {
@@ -11168,11 +11249,11 @@ var Context = function() {
11168
11249
  }, "exit")
11169
11250
  }, {
11170
11251
  key: "switchTo",
11171
- value: /* @__PURE__ */ __name(function switchTo(next2, pipe) {
11172
- if (typeof next2 === "string" || next2 instanceof Pipe) {
11173
- this.nextPipe = next2;
11252
+ value: /* @__PURE__ */ __name(function switchTo(next, pipe) {
11253
+ if (typeof next === "string" || next instanceof Pipe) {
11254
+ this.nextPipe = next;
11174
11255
  } else {
11175
- this.next = next2;
11256
+ this.next = next;
11176
11257
  if (pipe) {
11177
11258
  this.nextPipe = pipe;
11178
11259
  }
@@ -11397,8 +11478,8 @@ function collectChildrenDiffFilter(context) {
11397
11478
  var length = context.children.length;
11398
11479
  var child = void 0;
11399
11480
  var result = context.result;
11400
- for (var index2 = 0; index2 < length; index2++) {
11401
- child = context.children[index2];
11481
+ for (var index = 0; index < length; index++) {
11482
+ child = context.children[index];
11402
11483
  if (typeof child.result === "undefined") {
11403
11484
  continue;
11404
11485
  }
@@ -11474,8 +11555,8 @@ var collectChildrenPatchFilter = /* @__PURE__ */ __name(function collectChildren
11474
11555
  }
11475
11556
  var length = context.children.length;
11476
11557
  var child = void 0;
11477
- for (var index2 = 0; index2 < length; index2++) {
11478
- child = context.children[index2];
11558
+ for (var index = 0; index < length; index++) {
11559
+ child = context.children[index];
11479
11560
  if (Object.prototype.hasOwnProperty.call(context.left, child.childName) && child.result === void 0) {
11480
11561
  delete context.left[child.childName];
11481
11562
  } else if (context.left[child.childName] !== child.result) {
@@ -11511,8 +11592,8 @@ function collectChildrenReverseFilter(context) {
11511
11592
  var length = context.children.length;
11512
11593
  var child = void 0;
11513
11594
  var delta = {};
11514
- for (var index2 = 0; index2 < length; index2++) {
11515
- child = context.children[index2];
11595
+ for (var index = 0; index < length; index++) {
11596
+ child = context.children[index];
11516
11597
  if (delta[child.childName] !== child.result) {
11517
11598
  delta[child.childName] = child.result;
11518
11599
  }
@@ -11666,9 +11747,9 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11666
11747
  };
11667
11748
  var commonHead = 0;
11668
11749
  var commonTail = 0;
11669
- var index2 = void 0;
11750
+ var index = void 0;
11670
11751
  var index1 = void 0;
11671
- var index22 = void 0;
11752
+ var index2 = void 0;
11672
11753
  var array1 = context.left;
11673
11754
  var array2 = context.right;
11674
11755
  var len1 = array1.length;
@@ -11678,16 +11759,16 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11678
11759
  matchContext.matchByPosition = !arraysHaveMatchByRef(array1, array2, len1, len2);
11679
11760
  }
11680
11761
  while (commonHead < len1 && commonHead < len2 && matchItems(array1, array2, commonHead, commonHead, matchContext)) {
11681
- index2 = commonHead;
11682
- child = new DiffContext(context.left[index2], context.right[index2]);
11683
- context.push(child, index2);
11762
+ index = commonHead;
11763
+ child = new DiffContext(context.left[index], context.right[index]);
11764
+ context.push(child, index);
11684
11765
  commonHead++;
11685
11766
  }
11686
11767
  while (commonTail + commonHead < len1 && commonTail + commonHead < len2 && matchItems(array1, array2, len1 - 1 - commonTail, len2 - 1 - commonTail, matchContext)) {
11687
11768
  index1 = len1 - 1 - commonTail;
11688
- index22 = len2 - 1 - commonTail;
11689
- child = new DiffContext(context.left[index1], context.right[index22]);
11690
- context.push(child, index22);
11769
+ index2 = len2 - 1 - commonTail;
11770
+ child = new DiffContext(context.left[index1], context.right[index2]);
11771
+ context.push(child, index2);
11691
11772
  commonTail++;
11692
11773
  }
11693
11774
  var result = void 0;
@@ -11699,8 +11780,8 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11699
11780
  result = result || {
11700
11781
  _t: "a"
11701
11782
  };
11702
- for (index2 = commonHead; index2 < len2 - commonTail; index2++) {
11703
- result[index2] = [array2[index2]];
11783
+ for (index = commonHead; index < len2 - commonTail; index++) {
11784
+ result[index] = [array2[index]];
11704
11785
  }
11705
11786
  context.setResult(result).exit();
11706
11787
  return;
@@ -11709,8 +11790,8 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11709
11790
  result = result || {
11710
11791
  _t: "a"
11711
11792
  };
11712
- for (index2 = commonHead; index2 < len1 - commonTail; index2++) {
11713
- result["_" + index2] = [array1[index2], 0, 0];
11793
+ for (index = commonHead; index < len1 - commonTail; index++) {
11794
+ result["_" + index] = [array1[index], 0, 0];
11714
11795
  }
11715
11796
  context.setResult(result).exit();
11716
11797
  return;
@@ -11724,10 +11805,10 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11724
11805
  result = result || {
11725
11806
  _t: "a"
11726
11807
  };
11727
- for (index2 = commonHead; index2 < len1 - commonTail; index2++) {
11728
- if (arrayIndexOf(seq.indices1, index2 - commonHead) < 0) {
11729
- result["_" + index2] = [array1[index2], 0, 0];
11730
- removedItems.push(index2);
11808
+ for (index = commonHead; index < len1 - commonTail; index++) {
11809
+ if (arrayIndexOf(seq.indices1, index - commonHead) < 0) {
11810
+ result["_" + index] = [array1[index], 0, 0];
11811
+ removedItems.push(index);
11731
11812
  }
11732
11813
  }
11733
11814
  var detectMove = true;
@@ -11739,21 +11820,21 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11739
11820
  includeValueOnMove = true;
11740
11821
  }
11741
11822
  var removedItemsLength = removedItems.length;
11742
- for (index2 = commonHead; index2 < len2 - commonTail; index2++) {
11743
- var indexOnArray2 = arrayIndexOf(seq.indices2, index2 - commonHead);
11823
+ for (index = commonHead; index < len2 - commonTail; index++) {
11824
+ var indexOnArray2 = arrayIndexOf(seq.indices2, index - commonHead);
11744
11825
  if (indexOnArray2 < 0) {
11745
11826
  var isMove = false;
11746
11827
  if (detectMove && removedItemsLength > 0) {
11747
11828
  for (var removeItemIndex1 = 0; removeItemIndex1 < removedItemsLength; removeItemIndex1++) {
11748
11829
  index1 = removedItems[removeItemIndex1];
11749
- if (matchItems(trimmed1, trimmed2, index1 - commonHead, index2 - commonHead, matchContext)) {
11750
- result["_" + index1].splice(1, 2, index2, ARRAY_MOVE);
11830
+ if (matchItems(trimmed1, trimmed2, index1 - commonHead, index - commonHead, matchContext)) {
11831
+ result["_" + index1].splice(1, 2, index, ARRAY_MOVE);
11751
11832
  if (!includeValueOnMove) {
11752
11833
  result["_" + index1][0] = "";
11753
11834
  }
11754
- index22 = index2;
11755
- child = new DiffContext(context.left[index1], context.right[index22]);
11756
- context.push(child, index22);
11835
+ index2 = index;
11836
+ child = new DiffContext(context.left[index1], context.right[index2]);
11837
+ context.push(child, index2);
11757
11838
  removedItems.splice(removeItemIndex1, 1);
11758
11839
  isMove = true;
11759
11840
  break;
@@ -11761,13 +11842,13 @@ var diffFilter$1 = /* @__PURE__ */ __name(function arraysDiffFilter(context) {
11761
11842
  }
11762
11843
  }
11763
11844
  if (!isMove) {
11764
- result[index2] = [array2[index2]];
11845
+ result[index] = [array2[index]];
11765
11846
  }
11766
11847
  } else {
11767
11848
  index1 = seq.indices1[indexOnArray2] + commonHead;
11768
- index22 = seq.indices2[indexOnArray2] + commonHead;
11769
- child = new DiffContext(context.left[index1], context.right[index22]);
11770
- context.push(child, index22);
11849
+ index2 = seq.indices2[indexOnArray2] + commonHead;
11850
+ child = new DiffContext(context.left[index1], context.right[index2]);
11851
+ context.push(child, index2);
11771
11852
  }
11772
11853
  }
11773
11854
  context.setResult(result).exit();
@@ -11790,39 +11871,39 @@ var patchFilter$2 = /* @__PURE__ */ __name(function nestedPatchFilter2(context)
11790
11871
  if (context.delta._t !== "a") {
11791
11872
  return;
11792
11873
  }
11793
- var index2 = void 0;
11874
+ var index = void 0;
11794
11875
  var index1 = void 0;
11795
11876
  var delta = context.delta;
11796
11877
  var array = context.left;
11797
11878
  var toRemove = [];
11798
11879
  var toInsert = [];
11799
11880
  var toModify = [];
11800
- for (index2 in delta) {
11801
- if (index2 !== "_t") {
11802
- if (index2[0] === "_") {
11803
- if (delta[index2][2] === 0 || delta[index2][2] === ARRAY_MOVE) {
11804
- toRemove.push(parseInt(index2.slice(1), 10));
11881
+ for (index in delta) {
11882
+ if (index !== "_t") {
11883
+ if (index[0] === "_") {
11884
+ if (delta[index][2] === 0 || delta[index][2] === ARRAY_MOVE) {
11885
+ toRemove.push(parseInt(index.slice(1), 10));
11805
11886
  } else {
11806
- throw new Error("only removal or move can be applied at original array indices," + (" invalid diff type: " + delta[index2][2]));
11887
+ throw new Error("only removal or move can be applied at original array indices," + (" invalid diff type: " + delta[index][2]));
11807
11888
  }
11808
11889
  } else {
11809
- if (delta[index2].length === 1) {
11890
+ if (delta[index].length === 1) {
11810
11891
  toInsert.push({
11811
- index: parseInt(index2, 10),
11812
- value: delta[index2][0]
11892
+ index: parseInt(index, 10),
11893
+ value: delta[index][0]
11813
11894
  });
11814
11895
  } else {
11815
11896
  toModify.push({
11816
- index: parseInt(index2, 10),
11817
- delta: delta[index2]
11897
+ index: parseInt(index, 10),
11898
+ delta: delta[index]
11818
11899
  });
11819
11900
  }
11820
11901
  }
11821
11902
  }
11822
11903
  }
11823
11904
  toRemove = toRemove.sort(compare.numerically);
11824
- for (index2 = toRemove.length - 1; index2 >= 0; index2--) {
11825
- index1 = toRemove[index2];
11905
+ for (index = toRemove.length - 1; index >= 0; index--) {
11906
+ index1 = toRemove[index];
11826
11907
  var indexDiff = delta["_" + index1];
11827
11908
  var removedValue = array.splice(index1, 1)[0];
11828
11909
  if (indexDiff[2] === ARRAY_MOVE) {
@@ -11834,15 +11915,15 @@ var patchFilter$2 = /* @__PURE__ */ __name(function nestedPatchFilter2(context)
11834
11915
  }
11835
11916
  toInsert = toInsert.sort(compare.numericallyBy("index"));
11836
11917
  var toInsertLength = toInsert.length;
11837
- for (index2 = 0; index2 < toInsertLength; index2++) {
11838
- var insertion = toInsert[index2];
11918
+ for (index = 0; index < toInsertLength; index++) {
11919
+ var insertion = toInsert[index];
11839
11920
  array.splice(insertion.index, 0, insertion.value);
11840
11921
  }
11841
11922
  var toModifyLength = toModify.length;
11842
11923
  var child = void 0;
11843
11924
  if (toModifyLength > 0) {
11844
- for (index2 = 0; index2 < toModifyLength; index2++) {
11845
- var modification = toModify[index2];
11925
+ for (index = 0; index < toModifyLength; index++) {
11926
+ var modification = toModify[index];
11846
11927
  child = new PatchContext(context.left[modification.index], modification.delta);
11847
11928
  context.push(child, modification.index);
11848
11929
  }
@@ -11863,8 +11944,8 @@ var collectChildrenPatchFilter$1 = /* @__PURE__ */ __name(function collectChildr
11863
11944
  }
11864
11945
  var length = context.children.length;
11865
11946
  var child = void 0;
11866
- for (var index2 = 0; index2 < length; index2++) {
11867
- child = context.children[index2];
11947
+ for (var index = 0; index < length; index++) {
11948
+ child = context.children[index];
11868
11949
  context.left[child.childName] = child.result;
11869
11950
  }
11870
11951
  context.setResult(context.left).exit();
@@ -11893,20 +11974,20 @@ var reverseFilter$2 = /* @__PURE__ */ __name(function arraysReverseFilter(contex
11893
11974
  context.exit();
11894
11975
  }, "arraysReverseFilter");
11895
11976
  reverseFilter$2.filterName = "arrays";
11896
- var reverseArrayDeltaIndex = /* @__PURE__ */ __name(function reverseArrayDeltaIndex2(delta, index2, itemDelta) {
11897
- if (typeof index2 === "string" && index2[0] === "_") {
11898
- return parseInt(index2.substr(1), 10);
11977
+ var reverseArrayDeltaIndex = /* @__PURE__ */ __name(function reverseArrayDeltaIndex2(delta, index, itemDelta) {
11978
+ if (typeof index === "string" && index[0] === "_") {
11979
+ return parseInt(index.substr(1), 10);
11899
11980
  } else if (isArray$2(itemDelta) && itemDelta[2] === 0) {
11900
- return "_" + index2;
11981
+ return "_" + index;
11901
11982
  }
11902
- var reverseIndex = +index2;
11983
+ var reverseIndex = +index;
11903
11984
  for (var deltaIndex in delta) {
11904
11985
  var deltaItem = delta[deltaIndex];
11905
11986
  if (isArray$2(deltaItem)) {
11906
11987
  if (deltaItem[2] === ARRAY_MOVE) {
11907
11988
  var moveFromIndex = parseInt(deltaIndex.substr(1), 10);
11908
11989
  var moveToIndex = deltaItem[1];
11909
- if (moveToIndex === +index2) {
11990
+ if (moveToIndex === +index) {
11910
11991
  return moveFromIndex;
11911
11992
  }
11912
11993
  if (moveFromIndex <= reverseIndex && moveToIndex > reverseIndex) {
@@ -11938,8 +12019,8 @@ function collectChildrenReverseFilter$1(context) {
11938
12019
  var delta = {
11939
12020
  _t: "a"
11940
12021
  };
11941
- for (var index2 = 0; index2 < length; index2++) {
11942
- child = context.children[index2];
12022
+ for (var index = 0; index < length; index++) {
12023
+ child = context.children[index];
11943
12024
  var name = child.newName;
11944
12025
  if (typeof name === "undefined") {
11945
12026
  name = reverseArrayDeltaIndex(context.delta, child.childName, child.result);
@@ -12163,7 +12244,7 @@ var BaseFormatter = function() {
12163
12244
  __name(BaseFormatter2, "BaseFormatter");
12164
12245
  createClass(BaseFormatter2, [{
12165
12246
  key: "format",
12166
- value: /* @__PURE__ */ __name(function format(delta, left) {
12247
+ value: /* @__PURE__ */ __name(function format2(delta, left) {
12167
12248
  var context = {};
12168
12249
  this.prepareContext(context);
12169
12250
  this.recurse(context, delta, left);
@@ -12191,9 +12272,9 @@ var BaseFormatter = function() {
12191
12272
  }, {
12192
12273
  key: "finalize",
12193
12274
  value: /* @__PURE__ */ __name(function finalize(_ref) {
12194
- var buffer2 = _ref.buffer;
12195
- if (isArray$3(buffer2)) {
12196
- return buffer2.join("");
12275
+ var buffer = _ref.buffer;
12276
+ if (isArray$3(buffer)) {
12277
+ return buffer.join("");
12197
12278
  }
12198
12279
  }, "finalize")
12199
12280
  }, {
@@ -12272,13 +12353,13 @@ var BaseFormatter = function() {
12272
12353
  } else {
12273
12354
  keys.sort();
12274
12355
  }
12275
- for (var index2 = 0, length = keys.length; index2 < length; index2++) {
12276
- var key = keys[index2];
12356
+ for (var index = 0, length = keys.length; index < length; index++) {
12357
+ var key = keys[index];
12277
12358
  if (arrayKeys && key === "_t") {
12278
12359
  continue;
12279
12360
  }
12280
12361
  var leftKey = arrayKeys ? typeof key === "number" ? key : parseInt(trimUnderscore(key), 10) : key;
12281
- var isLast = index2 === length - 1;
12362
+ var isLast = index === length - 1;
12282
12363
  fn(key, leftKey, moveDestinations[leftKey], isLast);
12283
12364
  }
12284
12365
  }, "forEachDeltaKey")
@@ -12820,7 +12901,7 @@ var OPERATIONS = {
12820
12901
  }, "format_textdiff")
12821
12902
  }, {
12822
12903
  key: "format",
12823
- value: /* @__PURE__ */ __name(function format(delta, left) {
12904
+ value: /* @__PURE__ */ __name(function format2(delta, left) {
12824
12905
  var context = {};
12825
12906
  this.prepareContext(context);
12826
12907
  this.recurse(context, delta, left);
@@ -13407,7 +13488,7 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
13407
13488
  if (sequenceString.length !== 3) {
13408
13489
  throw new Error("must pass a string of length 3");
13409
13490
  }
13410
- let aa = threeLetterSequenceStringToAminoAcidMap[sequenceString];
13491
+ const aa = threeLetterSequenceStringToAminoAcidMap[sequenceString];
13411
13492
  if (aa) {
13412
13493
  return aa;
13413
13494
  }
@@ -13419,7 +13500,7 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
13419
13500
  }
13420
13501
  __name(getAminoAcidFromSequenceTriplet, "getAminoAcidFromSequenceTriplet");
13421
13502
  function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
13422
- let originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
13503
+ const originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
13423
13504
  let sequenceString = originalSequenceString;
13424
13505
  let startOffset = 0;
13425
13506
  if (optionalSubrangeRange) {
@@ -13429,8 +13510,8 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13429
13510
  );
13430
13511
  startOffset = optionalSubrangeRange.start;
13431
13512
  }
13432
- let sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
13433
- let aminoAcidDataForEachBaseOfDNA = [];
13513
+ const sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
13514
+ const aminoAcidDataForEachBaseOfDNA = [];
13434
13515
  let codonRange;
13435
13516
  let revCompGapLength = 0;
13436
13517
  let aminoAcidIndex = 0;
@@ -13460,12 +13541,12 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13460
13541
  aminoAcidIndex--;
13461
13542
  }
13462
13543
  }
13463
- for (let index2 = 2 + revCompGapLength; index2 < sequenceStringLength; index2 += 3) {
13544
+ for (let index = 2 + revCompGapLength; index < sequenceStringLength; index += 3) {
13464
13545
  let aminoAcid;
13465
13546
  if (isProteinSequence) {
13466
- aminoAcid = proteinAlphabet[sequenceString[(index2 - 2) / 3].toUpperCase()];
13547
+ aminoAcid = proteinAlphabet[sequenceString[(index - 2) / 3].toUpperCase()];
13467
13548
  } else {
13468
- let triplet = sequenceString.slice(index2 - 2, index2 + 1);
13549
+ let triplet = sequenceString.slice(index - 2, index + 1);
13469
13550
  if (!forward) {
13470
13551
  triplet = getReverseComplementSequenceString(triplet);
13471
13552
  }
@@ -13473,8 +13554,8 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13473
13554
  }
13474
13555
  codonRange = translateRange(
13475
13556
  {
13476
- start: index2 - 2,
13477
- end: index2
13557
+ start: index - 2,
13558
+ end: index
13478
13559
  },
13479
13560
  startOffset,
13480
13561
  originalSequenceStringLength
@@ -13512,7 +13593,7 @@ function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optio
13512
13593
  aminoAcidIndex--;
13513
13594
  }
13514
13595
  }
13515
- let lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
13596
+ const lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
13516
13597
  codonRange = translateRange(
13517
13598
  {
13518
13599
  start: sequenceStringLength - lengthOfEndBpsNotCoveredByAminoAcids,
@@ -13602,10 +13683,10 @@ function tidyUpAnnotation(_annotation, {
13602
13683
  annotation.name = "Untitled annotation";
13603
13684
  }
13604
13685
  if (provideNewIdsForAnnotations) {
13605
- annotation.id = bsonObjectId().str;
13686
+ annotation.id = shortid$1();
13606
13687
  }
13607
13688
  if (!annotation.id && annotation.id !== 0 && !doNotProvideIdsForAnnotations) {
13608
- annotation.id = bsonObjectId().str;
13689
+ annotation.id = shortid$1();
13609
13690
  messages.push(
13610
13691
  "Unable to detect valid ID for annotation, setting ID to " + annotation.id
13611
13692
  );
@@ -13834,7 +13915,7 @@ function tidyUpSequenceData(pSeqData, options = {}) {
13834
13915
  if (item.id || item.id === 0) {
13835
13916
  itemId = item.id;
13836
13917
  } else {
13837
- itemId = bsonObjectId().str;
13918
+ itemId = shortid$1();
13838
13919
  if (!doNotProvideIdsForAnnotations) {
13839
13920
  item.id = itemId;
13840
13921
  }
@@ -13897,7 +13978,7 @@ const reverseSeqDiff = /* @__PURE__ */ __name((diff2) => {
13897
13978
  return reverse(diff2);
13898
13979
  }, "reverseSeqDiff");
13899
13980
  function getAllInsertionsInSeqReads(seqReads) {
13900
- let allInsertionsInSeqReads = [];
13981
+ const allInsertionsInSeqReads = [];
13901
13982
  seqReads.forEach((seqRead) => {
13902
13983
  const splitSeqRead = seqRead.cigar.match(/([0-9]*[MDI])/g);
13903
13984
  for (let componentI = 0; componentI < splitSeqRead.length; componentI++) {
@@ -13914,7 +13995,7 @@ function getAllInsertionsInSeqReads(seqReads) {
13914
13995
  bpPosOfInsertion += previousComponentNumber;
13915
13996
  }
13916
13997
  }
13917
- let insertionInfo = {
13998
+ const insertionInfo = {
13918
13999
  // keeping bpPos 1-based
13919
14000
  bpPos: bpPosOfInsertion,
13920
14001
  number: numberOfInsertions
@@ -13923,7 +14004,7 @@ function getAllInsertionsInSeqReads(seqReads) {
13923
14004
  }
13924
14005
  }
13925
14006
  });
13926
- let sortedInsertions = allInsertionsInSeqReads.sort((a, b) => {
14007
+ const sortedInsertions = allInsertionsInSeqReads.sort((a, b) => {
13927
14008
  return a.bpPos - b.bpPos;
13928
14009
  });
13929
14010
  for (let i = 0; i < sortedInsertions.length - 1; i++) {
@@ -14017,16 +14098,16 @@ function getVirtualDigest({
14017
14098
  const sortedCutsites = cutsites.sort((a, b) => {
14018
14099
  return a.topSnipPosition - b.topSnipPosition;
14019
14100
  });
14020
- sortedCutsites.forEach((cutsite1, index2) => {
14101
+ sortedCutsites.forEach((cutsite1, index) => {
14021
14102
  if (computePartialDigest && !computePartialDigestDisabled) {
14022
- sortedCutsites.forEach((cs, index22) => {
14023
- pairs.push([cutsite1, sortedCutsites[index22]]);
14103
+ sortedCutsites.forEach((cs, index2) => {
14104
+ pairs.push([cutsite1, sortedCutsites[index2]]);
14024
14105
  });
14025
14106
  }
14026
14107
  if (!computeDigestDisabled) {
14027
14108
  pairs.push([
14028
14109
  cutsite1,
14029
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
14110
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
14030
14111
  ]);
14031
14112
  }
14032
14113
  });
@@ -14115,7 +14196,7 @@ function isEnzymeType2S(e) {
14115
14196
  }
14116
14197
  __name(isEnzymeType2S, "isEnzymeType2S");
14117
14198
  function insertGapsIntoRefSeq(refSeq, seqReads) {
14118
- let refSeqWithGaps = refSeq.split("");
14199
+ const refSeqWithGaps = refSeq.split("");
14119
14200
  const allInsertionsInSeqReads = getAllInsertionsInSeqReads(seqReads);
14120
14201
  for (let i = 0; i < allInsertionsInSeqReads.length; i++) {
14121
14202
  const bpPosOfInsertion = allInsertionsInSeqReads[i].bpPos;
@@ -14132,8 +14213,8 @@ function insertGapsIntoRefSeq(refSeq, seqReads) {
14132
14213
  return refSeqWithGaps.join("");
14133
14214
  }
14134
14215
  __name(insertGapsIntoRefSeq, "insertGapsIntoRefSeq");
14135
- var spliceString = /* @__PURE__ */ __name(function spliceSlice(str, index2, count, add) {
14136
- return str.slice(0, index2) + (add || "") + str.slice(index2 + count);
14216
+ var spliceString = /* @__PURE__ */ __name(function spliceSlice(str, index, count, add) {
14217
+ return str.slice(0, index) + (add || "") + str.slice(index + count);
14137
14218
  }, "spliceSlice");
14138
14219
  const spliceString$1 = /* @__PURE__ */ getDefaultExportFromCjs(spliceString);
14139
14220
  function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOrRange) {
@@ -14146,7 +14227,7 @@ function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOr
14146
14227
  invertRange(caretPositionOrRange, bpString.length)
14147
14228
  );
14148
14229
  stringToReturn = "";
14149
- ranges.forEach((range, index2) => {
14230
+ ranges.forEach((range, index) => {
14150
14231
  stringToReturn += getSequenceWithinRange(range, bpString);
14151
14232
  if (ranges.length === 1) {
14152
14233
  if (isPositionWithinRange(0, range, bpString.length, true, true)) {
@@ -14155,7 +14236,7 @@ function adjustBpsToReplaceOrInsert(bpString, insertString = "", caretPositionOr
14155
14236
  stringToReturn = insertString + stringToReturn;
14156
14237
  }
14157
14238
  } else {
14158
- if (index2 === 0)
14239
+ if (index === 0)
14159
14240
  stringToReturn += insertString;
14160
14241
  }
14161
14242
  });
@@ -14504,7 +14585,7 @@ function insertSequenceDataAtPositionOrRange(_sequenceDataToInsert, _existingSeq
14504
14585
  _sequenceDataToInsert,
14505
14586
  options
14506
14587
  );
14507
- let newSequenceData = lodashExports.cloneDeep(existingSequenceData);
14588
+ const newSequenceData = lodashExports.cloneDeep(existingSequenceData);
14508
14589
  const insertLength = sequenceDataToInsert.proteinSequence ? sequenceDataToInsert.proteinSequence.length * 3 : sequenceDataToInsert.sequence.length;
14509
14590
  let caretPosition = caretPositionOrRange;
14510
14591
  const isInsertSameLengthAsSelection = sequenceDataToInsert.sequence.length === getRangeLength(caretPositionOrRange, existingSequenceData.sequence.length);
@@ -14646,9 +14727,9 @@ function insertIntoChromatogram({
14646
14727
  if (justBaseCalls) {
14647
14728
  return chromatogramData;
14648
14729
  }
14649
- let baseTracesToInsert = [];
14650
- let qualNumsToInsert = [];
14651
- for (let index2 = 0; index2 < seqToInsert.length; index2++) {
14730
+ const baseTracesToInsert = [];
14731
+ const qualNumsToInsert = [];
14732
+ for (let index = 0; index < seqToInsert.length; index++) {
14652
14733
  qualNumsToInsert.push(0);
14653
14734
  const toPush = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0];
14654
14735
  baseTracesToInsert.push({
@@ -22326,7 +22407,7 @@ function generateAnnotation(start, end, maxLength) {
22326
22407
  return __spreadProps(__spreadValues({}, range), {
22327
22408
  name: getRandomInt(0, 1e5).toString(),
22328
22409
  type: "misc_feature",
22329
- id: bsonObjectId().str,
22410
+ id: shortid$1(),
22330
22411
  forward: Math.random() > 0.5,
22331
22412
  notes: {}
22332
22413
  });
@@ -22392,7 +22473,7 @@ function findNearestRangeOfSequenceOverlapToPosition(sequenceToSearch, overlapSe
22392
22473
  }
22393
22474
  const regex = new RegExp(overlapSequence, "ig");
22394
22475
  let result;
22395
- let index2;
22476
+ let index;
22396
22477
  let distance = Infinity;
22397
22478
  while (result = regex.exec(sequenceToSearch + (isLinear ? "" : sequenceToSearch))) {
22398
22479
  if (result.index > sequenceToSearch.length)
@@ -22402,13 +22483,13 @@ function findNearestRangeOfSequenceOverlapToPosition(sequenceToSearch, overlapSe
22402
22483
  if (newDistance > distance) {
22403
22484
  break;
22404
22485
  }
22405
- index2 = result.index;
22486
+ index = result.index;
22406
22487
  distance = newDistance;
22407
22488
  }
22408
22489
  return normalizeRange(
22409
22490
  {
22410
- start: index2,
22411
- end: index2 + overlapSequence.length - 1
22491
+ start: index,
22492
+ end: index + overlapSequence.length - 1
22412
22493
  },
22413
22494
  sequenceToSearch.length
22414
22495
  );
@@ -22451,13 +22532,13 @@ function getOrfsFromSequence(options) {
22451
22532
  forward,
22452
22533
  annotationTypePlural: "orfs",
22453
22534
  isOrf: true,
22454
- id: bsonObjectId().str
22535
+ id: shortid$1()
22455
22536
  });
22456
22537
  }
22457
22538
  }
22458
22539
  }
22459
22540
  const orfEnds = {};
22460
- orfRanges.forEach((orf, index2) => {
22541
+ orfRanges.forEach((orf, index) => {
22461
22542
  const indexOfAlreadyExistingOrf = orfEnds[orf.end];
22462
22543
  if (typeof indexOfAlreadyExistingOrf !== "undefined") {
22463
22544
  let internalOrf = orf;
@@ -22465,7 +22546,7 @@ function getOrfsFromSequence(options) {
22465
22546
  if (containingOrf.length < internalOrf.length) {
22466
22547
  internalOrf = orfRanges[indexOfAlreadyExistingOrf];
22467
22548
  containingOrf = orf;
22468
- orfEnds[orf.end] = index2;
22549
+ orfEnds[orf.end] = index;
22469
22550
  }
22470
22551
  const internalStartCodonIndex = forward ? internalOrf.start : originalSequenceLength - internalOrf.start - 1;
22471
22552
  containingOrf.internalStartCodonIndices = [
@@ -22475,7 +22556,7 @@ function getOrfsFromSequence(options) {
22475
22556
  ];
22476
22557
  internalOrf.remove = true;
22477
22558
  } else {
22478
- orfEnds[orf.end] = index2;
22559
+ orfEnds[orf.end] = index;
22479
22560
  if (!forward) {
22480
22561
  const endHolder = orf.end;
22481
22562
  orf.end = originalSequenceLength - orf.start - 1;
@@ -22510,14 +22591,13 @@ function findOrfsInPlasmid(sequence, circular, minimumOrfSize, useAdditionalOrfS
22510
22591
  return forwardOrfs.concat(reverseOrfs);
22511
22592
  }
22512
22593
  __name(findOrfsInPlasmid, "findOrfsInPlasmid");
22513
- var matchOperatorsRe = /[|\\{}()[\]^$+*?.]/g;
22514
- var escapeStringRegexp = /* @__PURE__ */ __name(function(str) {
22515
- if (typeof str !== "string") {
22594
+ function escapeStringRegexp(string) {
22595
+ if (typeof string !== "string") {
22516
22596
  throw new TypeError("Expected a string");
22517
22597
  }
22518
- return str.replace(matchOperatorsRe, "\\$&");
22519
- }, "escapeStringRegexp");
22520
- const escapeStringRegexp$1 = /* @__PURE__ */ getDefaultExportFromCjs(escapeStringRegexp);
22598
+ return string.replace(/[|\\{}()[\]^$+*?.]/g, "\\$&").replace(/-/g, "\\x2d");
22599
+ }
22600
+ __name(escapeStringRegexp, "escapeStringRegexp");
22521
22601
  function getAminoAcidStringFromSequenceString(sequenceString) {
22522
22602
  const aminoAcidsPerBase = getAminoAcidDataForEachBaseOfDna(
22523
22603
  sequenceString,
@@ -22540,8 +22620,7 @@ function findSequenceMatches(sequence, searchString, options = {}) {
22540
22620
  const { searchReverseStrand } = options;
22541
22621
  if (searchReverseStrand) {
22542
22622
  const sequenceLength = sequence.length;
22543
- let reverseSeq;
22544
- reverseSeq = getReverseComplementSequenceString(sequence);
22623
+ const reverseSeq = getReverseComplementSequenceString(sequence);
22545
22624
  const reverseMatches = findSequenceMatchesTopStrand(
22546
22625
  reverseSeq,
22547
22626
  searchString,
@@ -22568,7 +22647,7 @@ function findSequenceMatchesTopStrand(sequence, searchString, options = {}) {
22568
22647
  isProteinSequence,
22569
22648
  isProteinSearch
22570
22649
  } = options;
22571
- let searchStringToUse = escapeStringRegexp$1(searchString);
22650
+ let searchStringToUse = escapeStringRegexp(searchString);
22572
22651
  if (isAmbiguous) {
22573
22652
  if (isProteinSearch || isProteinSequence) {
22574
22653
  searchStringToUse = convertAmbiguousStringToRegex(
@@ -22606,7 +22685,7 @@ function findSequenceMatchesTopStrand(sequence, searchString, options = {}) {
22606
22685
  }
22607
22686
  ];
22608
22687
  }
22609
- let ranges = [];
22688
+ const ranges = [];
22610
22689
  sequencesToCheck.forEach(({ seqToCheck, offset }) => {
22611
22690
  const reg = new RegExp(searchStringToUse, "ig");
22612
22691
  let match;
@@ -22851,7 +22930,7 @@ function getInsertBetweenVals(caretPosition, selectionLayer, sequenceLength) {
22851
22930
  }
22852
22931
  __name(getInsertBetweenVals, "getInsertBetweenVals");
22853
22932
  function getLeftAndRightOfSequenceInRangeGivenPosition(range, position, sequence) {
22854
- let result = {
22933
+ const result = {
22855
22934
  leftHandSide: "",
22856
22935
  rightHandSide: ""
22857
22936
  };
@@ -22877,15 +22956,15 @@ function getLeftAndRightOfSequenceInRangeGivenPosition(range, position, sequence
22877
22956
  return result;
22878
22957
  }
22879
22958
  __name(getLeftAndRightOfSequenceInRangeGivenPosition, "getLeftAndRightOfSequenceInRangeGivenPosition");
22880
- function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn, options) {
22959
+ function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn) {
22881
22960
  sequenceToSearchIn = sequenceToSearchIn.toLowerCase();
22882
22961
  sequenceToFind = sequenceToFind.toLowerCase();
22883
22962
  const lengthenedSeqToSearch = sequenceToSearchIn + sequenceToSearchIn;
22884
- const index2 = lengthenedSeqToSearch.indexOf(sequenceToFind);
22885
- if (index2 > -1) {
22963
+ const index = lengthenedSeqToSearch.indexOf(sequenceToFind);
22964
+ if (index > -1) {
22886
22965
  return {
22887
- start: index2,
22888
- end: modulatePositionByRange(index2 + sequenceToFind.length - 1, {
22966
+ start: index,
22967
+ end: modulatePositionByRange(index + sequenceToFind.length - 1, {
22889
22968
  start: 0,
22890
22969
  end: sequenceToSearchIn.length - 1
22891
22970
  })
@@ -22897,15 +22976,15 @@ function getOverlapBetweenTwoSequences(sequenceToFind, sequenceToSearchIn, optio
22897
22976
  __name(getOverlapBetweenTwoSequences, "getOverlapBetweenTwoSequences");
22898
22977
  function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22899
22978
  restrictionEnzymes = restrictionEnzymes.length ? restrictionEnzymes : [restrictionEnzymes];
22900
- let bps = seqData.sequence;
22901
- let seqLen = bps.length;
22902
- let circular = seqData.circular;
22979
+ const bps = seqData.sequence;
22980
+ const seqLen = bps.length;
22981
+ const circular = seqData.circular;
22903
22982
  let cutsites = [];
22904
22983
  restrictionEnzymes.forEach((enzyme) => {
22905
- let newCutsites = cutSequenceByRestrictionEnzyme(bps, circular, enzyme);
22984
+ const newCutsites = cutSequenceByRestrictionEnzyme(bps, circular, enzyme);
22906
22985
  cutsites = cutsites.concat(newCutsites);
22907
22986
  });
22908
- let parts = [];
22987
+ const parts = [];
22909
22988
  if (cutsites.length < 1) {
22910
22989
  return parts;
22911
22990
  } else if (cutsites.length === 1) {
@@ -22918,16 +22997,16 @@ function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22918
22997
  );
22919
22998
  return parts;
22920
22999
  } else {
22921
- let pairs = pairwise(cutsites);
23000
+ const pairs = pairwise(cutsites);
22922
23001
  pairs.forEach((pair) => {
22923
- let cut1 = pair[0];
22924
- let cut2 = pair[1];
22925
- let part1 = getPartBetweenEnzymesWithInclusiveOverhangs(
23002
+ const cut1 = pair[0];
23003
+ const cut2 = pair[1];
23004
+ const part1 = getPartBetweenEnzymesWithInclusiveOverhangs(
22926
23005
  cut1,
22927
23006
  cut2,
22928
23007
  seqLen
22929
23008
  );
22930
- let part2 = getPartBetweenEnzymesWithInclusiveOverhangs(
23009
+ const part2 = getPartBetweenEnzymesWithInclusiveOverhangs(
22931
23010
  cut2,
22932
23011
  cut1,
22933
23012
  seqLen
@@ -22944,10 +23023,10 @@ function getPossiblePartsFromSequenceAndEnzyme(seqData, restrictionEnzymes) {
22944
23023
  }
22945
23024
  __name(getPossiblePartsFromSequenceAndEnzyme, "getPossiblePartsFromSequenceAndEnzyme");
22946
23025
  function getPartBetweenEnzymesWithInclusiveOverhangs(cut1, cut2, seqLen) {
22947
- let firstCutOffset = getEnzymeRelativeOffset(cut1.restrictionEnzyme);
22948
- let secondCutOffset = getEnzymeRelativeOffset(cut2.restrictionEnzyme);
22949
- let start = cut1.topSnipBeforeBottom ? cut1.topSnipPosition : cut1.bottomSnipPosition;
22950
- let end = normalizePositionByRangeLength(
23026
+ const firstCutOffset = getEnzymeRelativeOffset(cut1.restrictionEnzyme);
23027
+ const secondCutOffset = getEnzymeRelativeOffset(cut2.restrictionEnzyme);
23028
+ const start = cut1.topSnipBeforeBottom ? cut1.topSnipPosition : cut1.bottomSnipPosition;
23029
+ const end = normalizePositionByRangeLength(
22951
23030
  (cut2.topSnipBeforeBottom ? cut2.bottomSnipPosition : cut2.topSnipPosition) - 1,
22952
23031
  seqLen
22953
23032
  );
@@ -22979,7 +23058,7 @@ function pairwise(list) {
22979
23058
  if (list.length < 2) {
22980
23059
  return [];
22981
23060
  }
22982
- let first = list[0], rest = list.slice(1), pairs = rest.map((x) => {
23061
+ const first = list[0], rest = list.slice(1), pairs = rest.map((x) => {
22983
23062
  return [first, x];
22984
23063
  });
22985
23064
  return pairs.concat(pairwise(rest));
@@ -23063,8 +23142,8 @@ function guessIfSequenceIsDnaAndNotProtein(seq, options = {}) {
23063
23142
  let count = 0;
23064
23143
  if (!seq || !seq.length)
23065
23144
  return true;
23066
- for (let index2 = 0; index2 < seq.length; index2++) {
23067
- const letter = seq[index2];
23145
+ for (let index = 0; index < seq.length; index++) {
23146
+ const letter = seq[index];
23068
23147
  if (dnaLetterMap[letter.toUpperCase()]) {
23069
23148
  count = count + 1;
23070
23149
  }
@@ -23135,7 +23214,6 @@ function mapAnnotationsToRows(annotations, sequenceLength, bpsPerRow, { splitFor
23135
23214
  }
23136
23215
  __name(mapAnnotationsToRows, "mapAnnotationsToRows");
23137
23216
  function mapAnnotationToRows({
23138
- wrappedAnnotations,
23139
23217
  annotation,
23140
23218
  sequenceLength,
23141
23219
  bpsPerRow,
@@ -23149,7 +23227,7 @@ function mapAnnotationToRows({
23149
23227
  location || annotation,
23150
23228
  sequenceLength
23151
23229
  );
23152
- ranges.forEach((range, index2) => {
23230
+ ranges.forEach((range, index) => {
23153
23231
  const startingRow = Math.floor(range.start / bpsPerRow);
23154
23232
  const endingRow = Math.floor(range.end / bpsPerRow);
23155
23233
  for (let rowNumber = startingRow; rowNumber <= endingRow; rowNumber++) {
@@ -23179,7 +23257,7 @@ function mapAnnotationToRows({
23179
23257
  }
23180
23258
  });
23181
23259
  } else {
23182
- if (index2 > 0 && //second half of an annotation range
23260
+ if (index > 0 && //second half of an annotation range
23183
23261
  annotationsForRow.length && //there are already annotations within the row
23184
23262
  annotationsForRow[annotationsForRow.length - 1].annotation === annotation) {
23185
23263
  yOffset = annotationsForRow[annotationsForRow.length - 1].yOffset;
@@ -23255,7 +23333,7 @@ function prepareRowData(sequenceData, bpsPerRow) {
23255
23333
  }
23256
23334
  __name(prepareRowData, "prepareRowData");
23257
23335
  function condensePairwiseAlignmentDifferences(referenceSeq, alignedSeq) {
23258
- let overviewMinimapTrack = [];
23336
+ const overviewMinimapTrack = [];
23259
23337
  const referenceSeqSplit = referenceSeq.toLowerCase().split("");
23260
23338
  const alignedSeqSplit = alignedSeq.toLowerCase().split("");
23261
23339
  const seqLength = alignedSeq.length;
@@ -23435,7 +23513,7 @@ function addGapsToSeqReads(refSeq, seqReads) {
23435
23513
  return a.bpPos - b.bpPos;
23436
23514
  });
23437
23515
  otherInsertions = otherInsertions.filter(
23438
- (object, index2) => index2 === otherInsertions.findIndex(
23516
+ (object, index) => index === otherInsertions.findIndex(
23439
23517
  (obj) => JSON.stringify(obj) === JSON.stringify(object)
23440
23518
  )
23441
23519
  );
@@ -23754,21 +23832,21 @@ function getDigestFragmentsForCutsites(sequenceLength, circular, cutsites, opts
23754
23832
  }
23755
23833
  ];
23756
23834
  }
23757
- sortedCutsites.forEach((cutsite1, index2) => {
23758
- if (!circular && !sortedCutsites[index2 + 1]) {
23835
+ sortedCutsites.forEach((cutsite1, index) => {
23836
+ if (!circular && !sortedCutsites[index + 1]) {
23759
23837
  return;
23760
23838
  }
23761
23839
  if (opts.computePartialDigests) {
23762
- sortedCutsites.forEach((cs, index22) => {
23763
- if (index22 === index2 + 1 || index22 === 0) {
23840
+ sortedCutsites.forEach((cs, index2) => {
23841
+ if (index2 === index + 1 || index2 === 0) {
23764
23842
  return;
23765
23843
  }
23766
- pairs.push([cutsite1, sortedCutsites[index22]]);
23844
+ pairs.push([cutsite1, sortedCutsites[index2]]);
23767
23845
  });
23768
23846
  }
23769
23847
  pairs.push([
23770
23848
  cutsite1,
23771
- sortedCutsites[index2 + 1] ? sortedCutsites[index2 + 1] : sortedCutsites[0]
23849
+ sortedCutsites[index + 1] ? sortedCutsites[index + 1] : sortedCutsites[0]
23772
23850
  ]);
23773
23851
  });
23774
23852
  pairs.forEach(([cut1, cut2]) => {