@teselagen/ove 0.7.28 → 0.7.29

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (285) hide show
  1. package/index.cjs.js +1055 -996
  2. package/index.es.js +1055 -996
  3. package/index.umd.js +189036 -0
  4. package/ove.css +1 -1
  5. package/package.json +2 -6
  6. package/src/helperComponents/PropertiesDialog/TranslationProperties.js +1 -1
  7. package/AASliver.js +0 -187
  8. package/AddLaddersDialog.js +0 -82
  9. package/AdditionalCutsiteInfoDialog.js +0 -599
  10. package/AlignmentVisibilityTool.js +0 -105
  11. package/AnnotationContainerHolder.js +0 -20
  12. package/AnnotationPositioner.js +0 -27
  13. package/AutoAnnotate.js +0 -501
  14. package/AutoAnnotateBpMatchingDialog.js +0 -208
  15. package/Axis.js +0 -151
  16. package/AxisNumbers.js +0 -35
  17. package/Browser.js +0 -106
  18. package/Caret.js +0 -63
  19. package/Chromatogram.js +0 -293
  20. package/CircularDnaSequence.js +0 -73
  21. package/CircularZoomMinimap.js +0 -16
  22. package/ColorPicker.js +0 -30
  23. package/CommandHotkeyHandler.js +0 -44
  24. package/CreateAnnotationsPage.js +0 -98
  25. package/Cutsite.js +0 -18
  26. package/CutsiteProperties.js +0 -176
  27. package/CutsiteSelectionLayers.js +0 -47
  28. package/Cutsites.js +0 -271
  29. package/DeletionLayer.js +0 -28
  30. package/DropHandler.css +0 -21
  31. package/DropHandler.js +0 -64
  32. package/EditCaretPosition.js +0 -234
  33. package/EditTrackNameDialog.js +0 -30
  34. package/Feature.js +0 -83
  35. package/FeatureProperties.js +0 -6
  36. package/FillWindow.js +0 -47
  37. package/GenbankView.js +0 -74
  38. package/GeneralProperties.js +0 -117
  39. package/GenericAnnotationProperties.js +0 -406
  40. package/GlobalDialog.js +0 -73
  41. package/GlobalDialogUtils.js +0 -110
  42. package/GoToDialog.js +0 -25
  43. package/HorizontalPanelDragHandle.js +0 -35
  44. package/Keyboard.js +0 -85
  45. package/Labels.js +0 -327
  46. package/Ladder.css +0 -20
  47. package/Ladder.js +0 -303
  48. package/MeltingTemp.js +0 -85
  49. package/Menlo.ttf +0 -0
  50. package/Minimap.js +0 -515
  51. package/Mismatches.js +0 -134
  52. package/Monaco.ttf +0 -0
  53. package/MultipleSeqsDetectedOnImportDialog.js +0 -74
  54. package/Orf.js +0 -109
  55. package/OrfProperties.js +0 -117
  56. package/Orfs.js +0 -35
  57. package/PCRTool.js +0 -179
  58. package/PairwiseAlignmentView.js +0 -68
  59. package/Part.js +0 -34
  60. package/PartProperties.js +0 -9
  61. package/PassThrough.js +0 -3
  62. package/PerformantSelectionLayer.js +0 -32
  63. package/PinchHelper.js +0 -24
  64. package/PointedAnnotation.js +0 -347
  65. package/PositionAnnotationOnCircle.js +0 -26
  66. package/Primer.js +0 -41
  67. package/PrimerProperties.js +0 -19
  68. package/ReflexContainer.js +0 -802
  69. package/ReflexElement.js +0 -160
  70. package/ReflexEvents.js +0 -77
  71. package/ReflexSplitter.js +0 -205
  72. package/RenameSequenceDialog.js +0 -7
  73. package/RotateCircularViewSlider.js +0 -93
  74. package/SelectDialog.js +0 -150
  75. package/SequenceName.js +0 -15
  76. package/SimpleCircularOrLinearView.js +0 -381
  77. package/SimpleOligoPreview.js +0 -39
  78. package/SingleEnzymeCutsiteInfo.js +0 -139
  79. package/ToolbarItem.js +0 -192
  80. package/Translation.js +0 -198
  81. package/TranslationProperties.js +0 -149
  82. package/UncontrolledSliderWithPlusMinusBtns.css +0 -5
  83. package/UncontrolledSliderWithPlusMinusBtns.js +0 -134
  84. package/VeTopRightContainer.js +0 -12
  85. package/ZoomCircularViewSlider.js +0 -62
  86. package/ZoomLinearView.js +0 -47
  87. package/addAlignment.js +0 -6
  88. package/addMetaToActionCreators.js +0 -12
  89. package/addWrappedAddons.js +0 -20
  90. package/alignmentTool.js +0 -503
  91. package/alignments.js +0 -379
  92. package/annotationLabelVisibility.js +0 -2
  93. package/annotationSearchSelector.js +0 -24
  94. package/annotationTypes.js +0 -35
  95. package/annotationVisibility.js +0 -196
  96. package/annotationsToSupport.js +0 -104
  97. package/arrayToObjWithIds.js +0 -17
  98. package/arrayUtils.js +0 -19
  99. package/array_move.js +0 -10
  100. package/calculateTickMarkPositionsForGivenRange.js +0 -47
  101. package/caretPosition.js +0 -27
  102. package/cdsFeaturesSelector.js +0 -9
  103. package/charWidth.js +0 -22
  104. package/circular.js +0 -19
  105. package/circularSelector.js +0 -4
  106. package/clickAndDragUtils.js +0 -576
  107. package/coerceInitialValue.js +0 -7
  108. package/combineReducersDontIgnoreKeys.js +0 -12
  109. package/commandUtils.js +0 -20
  110. package/constants.js +0 -2
  111. package/copyOptions.js +0 -34
  112. package/createFragmentLines.js +0 -120
  113. package/createMergedDefaultStateReducer.js +0 -30
  114. package/createMetaAction.js +0 -12
  115. package/createSequenceInputPopup.js +0 -290
  116. package/createSequenceInputPopupStyle.css +0 -87
  117. package/createSimpleDialog.js +0 -89
  118. package/createYourOwnEnzyme.js +0 -39
  119. package/cutsiteLabelColorSelector.js +0 -6
  120. package/cutsiteTool.js +0 -88
  121. package/cutsitesByRangeSelector.js +0 -5
  122. package/cutsitesSelector.js +0 -61
  123. package/darkmode.css +0 -98
  124. package/defaultConfig.js +0 -150
  125. package/deletionLayers.js +0 -36
  126. package/description.js +0 -21
  127. package/digestTool.js +0 -34
  128. package/dnaToColor.js +0 -17
  129. package/downloadTool.js +0 -39
  130. package/draggableClassnames.js +0 -5
  131. package/drawAnnotations.js +0 -440
  132. package/drawDirectedPiePiece.js +0 -142
  133. package/editTool.js +0 -49
  134. package/editorSelector.js +0 -2
  135. package/editorUtils.js +0 -205
  136. package/estimateRowHeight.js +0 -184
  137. package/featureLengthsToHide.js +0 -27
  138. package/featureTool.js +0 -34
  139. package/features.js +0 -19
  140. package/featuresSelector.js +0 -8
  141. package/filteredCutsitesSelector.js +0 -136
  142. package/filteredFeaturesSelector.js +0 -32
  143. package/filteredPartsSelector.js +0 -57
  144. package/filteredPrimersSelector.js +0 -27
  145. package/filteredRestrictionEnzymesSelector.js +0 -1
  146. package/find.png +0 -0
  147. package/findTool.js +0 -79
  148. package/findToolConstants.js +0 -1
  149. package/frameTranslations.js +0 -52
  150. package/fullscreen.png +0 -0
  151. package/getAdditionalEnzymesSelector.js +0 -46
  152. package/getAngleForPositionMidpoint.js +0 -3
  153. package/getAnnotationClassnames.js +0 -12
  154. package/getAnnotationNameAndStartStopString.js +0 -61
  155. package/getBpsPerRow.js +0 -19
  156. package/getCutsiteLabelHeights.js +0 -56
  157. package/getGapMap.js +0 -12
  158. package/getGaps.js +0 -27
  159. package/getInternalLabel.js +0 -40
  160. package/getOveHotkeyDefs.js +0 -12
  161. package/getPairwiseOverviewLinearViewOptions.js +0 -38
  162. package/getRangeAnglesSpecial.js +0 -12
  163. package/getStructuredBases.js +0 -97
  164. package/getTrackFromEvent.js +0 -25
  165. package/getVisibleStartEnd.js +0 -7
  166. package/getXStartAndWidthFromNonCircularRange.js +0 -12
  167. package/getXStartAndWidthOfRangeWrtRow.js +0 -27
  168. package/getXStartAndWidthOfRowAnnotation.js +0 -19
  169. package/getYOffset.js +0 -15
  170. package/hoveredAnnotation.js +0 -24
  171. package/importTool.js +0 -27
  172. package/index.js +0 -71
  173. package/inlineFindTool.js +0 -38
  174. package/isElementInViewport.js +0 -29
  175. package/isEnzymeFilterAndSelector.js +0 -1
  176. package/isTargetWithinEl.js +0 -6
  177. package/labelLineIntensity.js +0 -25
  178. package/labelSize.js +0 -23
  179. package/ladderDefaults.js +0 -25
  180. package/lastSavedId.js +0 -20
  181. package/lineageLines.js +0 -11
  182. package/linear.png +0 -0
  183. package/makeStore.js +0 -34
  184. package/massageTickSpacing.js +0 -19
  185. package/materiallyAvailable.js +0 -19
  186. package/middleware.js +0 -112
  187. package/minimumOrfSize.js +0 -24
  188. package/minimumOrfSizeSelector.js +0 -2
  189. package/modalActions.js +0 -3
  190. package/moveCaret.js +0 -58
  191. package/name.js +0 -19
  192. package/normalizeAngle.js +0 -3
  193. package/normalizeAngleRange.js +0 -9
  194. package/oligoTool.js +0 -30
  195. package/onlyUpdateForKeysDeep.js +0 -31
  196. package/orfFrameToColorMap.js +0 -10
  197. package/orfTool.js +0 -136
  198. package/orfsSelector.js +0 -15
  199. package/panelsShown.js +0 -294
  200. package/partLengthsToHide.js +0 -23
  201. package/partOverhangs.js +0 -6
  202. package/partTagSearch.js +0 -69
  203. package/partTool.js +0 -45
  204. package/parts.js +0 -19
  205. package/partsSelector.js +0 -8
  206. package/pie.png +0 -0
  207. package/polarToSpecialCartesian.js +0 -7
  208. package/positionCutsites.js +0 -6
  209. package/prepareRowData.js +0 -64
  210. package/primerBases.js +0 -221
  211. package/primerLengthsToHide.js +0 -27
  212. package/primers.js +0 -19
  213. package/primersSelector.js +0 -8
  214. package/print.png +0 -0
  215. package/printTool.js +0 -31
  216. package/propertiesTool.js +0 -40
  217. package/proteinUtils.js +0 -3
  218. package/pureNoFunc.js +0 -18
  219. package/readOnly.js +0 -25
  220. package/redoTool.js +0 -30
  221. package/reflex-styles.css +0 -128
  222. package/reflex-styles.css.map +0 -9
  223. package/relaxLabelAngles.js +0 -157
  224. package/relaxLabels_DEPRECATED.js +0 -105
  225. package/replacementLayers.js +0 -36
  226. package/restrictionEnzymes.js +0 -52
  227. package/restrictionEnzymesSelector.js +0 -34
  228. package/rowviewContants.js +0 -3
  229. package/ruler.css +0 -89
  230. package/save.png +0 -0
  231. package/saveTool.js +0 -44
  232. package/searchLayersSelector.js +0 -71
  233. package/selectedAnnotations.js +0 -89
  234. package/selectedAnnotationsSelector.js +0 -1
  235. package/selectedCutsitesSelector.js +0 -21
  236. package/selectedPartTags.js +0 -21
  237. package/selectionLayer.js +0 -25
  238. package/sequence.js +0 -12
  239. package/sequenceDataHistory.js +0 -43
  240. package/sequenceDataSelector.js +0 -2
  241. package/sequenceLengthSelector.js +0 -5
  242. package/sequenceSelector.js +0 -4
  243. package/sharedActionCreators.js +0 -0
  244. package/shouldFlipText.js +0 -4
  245. package/shouldRerender.js +0 -27
  246. package/showFileDialog.js +0 -25
  247. package/showGCContent.js +0 -23
  248. package/show_cut_sites.png +0 -0
  249. package/show_features.png +0 -0
  250. package/show_orfs.png +0 -0
  251. package/show_primers.png +0 -0
  252. package/simpleDialog.css +0 -13
  253. package/specialCutsiteFilterOptions.js +0 -22
  254. package/style.css +0 -10
  255. package/tagsToBoldSelector.js +0 -2
  256. package/toggle_views.svg +0 -1
  257. package/toolBar.js +0 -23
  258. package/translationSearchMatchesSelector.js +0 -14
  259. package/translations.js +0 -20
  260. package/translationsRawSelector.js +0 -8
  261. package/translationsSelector.js +0 -137
  262. package/typeField.js +0 -24
  263. package/undoTool.js +0 -30
  264. package/updateEditor.js +0 -200
  265. package/updateLabelsForInViewFeatures.js +0 -55
  266. package/updateLabelsForInViewFeaturesCircView.js +0 -41
  267. package/updateTrackHelper.js +0 -58
  268. package/uppercaseSequenceMapFont.js +0 -25
  269. package/upsertDeleteActionGenerator.js +0 -31
  270. package/useAAColorType.js +0 -8
  271. package/useAdditionalOrfStartCodons.js +0 -24
  272. package/useAnnotationLimits.js +0 -42
  273. package/useChromatogramPrefs.js +0 -31
  274. package/useFormValue.js +0 -7
  275. package/useLadders.js +0 -6
  276. package/useMeltingTemp.js +0 -7
  277. package/useTmType.js +0 -10
  278. package/userDefinedHandlersAndOpts.js +0 -61
  279. package/utils.js +0 -37
  280. package/versionHistory.js +0 -26
  281. package/versionHistoryTool.js +0 -21
  282. package/viewSubmenu.js +0 -479
  283. package/visibilityTool.js +0 -39
  284. package/withHover.js +0 -113
  285. package/withRestrictionEnzymes.js +0 -15
package/withHover.js DELETED
@@ -1,113 +0,0 @@
1
- import classnames from "classnames";
2
- import { compose } from "redux";
3
- import { connect } from "react-redux";
4
- import React from "react";
5
- import { store } from "@risingstack/react-easy-state";
6
- import * as hoveredAnnotationActions from "../redux/hoveredAnnotation";
7
- import { withHandlers, branch } from "recompose";
8
- import { modifiableTypes } from "@teselagen/sequence-utils";
9
-
10
- export const HoveredIdContext = React.createContext({
11
- hoveredId: "" // default value
12
- });
13
-
14
- export function withHoveredIdFromContext(Component) {
15
- return function HoveredIdComponent(props) {
16
- return (
17
- <HoveredIdContext.Consumer>
18
- {contexts => <Component {...props} {...contexts} />}
19
- </HoveredIdContext.Consumer>
20
- );
21
- };
22
- }
23
- export const hoveredAnnEasyStore = store({
24
- hoveredAnn: undefined,
25
- selectedAnn: undefined
26
- });
27
-
28
- export default compose(
29
- withHoveredIdFromContext,
30
- branch(
31
- ({ noRedux }) => !noRedux,
32
- connect(function (
33
- state,
34
- {
35
- id,
36
- editorName = "StandaloneEditor",
37
- className,
38
- hoveredId: hoveredIdFromContext,
39
- passHoveredId
40
- }
41
- ) {
42
- if (!editorName) {
43
- console.warn(
44
- "please pass an editorName to the withHover() wrapped component"
45
- );
46
- }
47
- const editorState = state.VectorEditor[editorName] || {};
48
- const hoveredId = editorState.hoveredAnnotation || hoveredIdFromContext; //we can pass a hoveredId from context in order to still use the hover functionality without being connected to redux! see http://localhost:3344/#/SimpleCircularOrLinearView for an example
49
- const isIdHashmap = typeof id === "object";
50
-
51
- const hovered = !!(isIdHashmap ? id[hoveredId] : hoveredId === id);
52
- const newClassName = classnames(className, "hoverHelper", {
53
- veAnnotationHovered: hovered
54
- });
55
- const toReturn = {
56
- hovered,
57
- className: newClassName
58
- };
59
- if (hovered && passHoveredId) {
60
- //only pass hoveredId if it is hovered
61
- toReturn.hoveredId = hoveredId;
62
- }
63
- return toReturn;
64
- }, hoveredAnnotationActions)
65
- ),
66
- withHandlers({
67
- onMouseOver: props =>
68
- function (e) {
69
- // loop through the target element and the parents and see if any of them have the hoverHelper class
70
- // if they do, then we don't want to trigger the hover event
71
- // if they don't, then we do want to trigger the hover event
72
- // we should stop the loop if the target element is implementing this onMouseOver event
73
- // e.stopPropagation(); //this is important otherwise hovering labels inside circular view label groups won't work
74
- const target = e.target;
75
- let alreadyHandled = false;
76
- let currentElement = target;
77
- while (currentElement) {
78
- if (currentElement === e.currentTarget) {
79
- break;
80
- }
81
- // console.log(`currentElement:`, currentElement)
82
-
83
- if (currentElement.classList.contains("hoverHelper")) {
84
- alreadyHandled = true;
85
- break;
86
- }
87
- currentElement = currentElement.parentElement;
88
- }
89
- if (alreadyHandled) return;
90
-
91
- // const alreadyHandled = e.target.classList.contains("hoverHelper");
92
- const { editorName, id, hoveredAnnotationUpdate } = props;
93
- const isIdHashmap = typeof id === "object";
94
- const idToPass = isIdHashmap ? Object.keys(id)[0] : id;
95
- const annot = props?.annotation || props?.label?.annotation;
96
- if (modifiableTypes.includes(annot?.annotationTypePlural)) {
97
- hoveredAnnEasyStore.hoveredAnn = annot;
98
- }
99
- //because the calling onHover can slow things down, we disable it if dragging or scrolling
100
- if (window.__veDragging || window.__veScrolling) return;
101
-
102
- hoveredAnnotationUpdate &&
103
- hoveredAnnotationUpdate(idToPass, { editorName });
104
- },
105
- onMouseLeave: props => e => {
106
- hoveredAnnEasyStore.hoveredAnn = undefined;
107
- const { editorName, hoveredAnnotationClear } = props;
108
- e.stopPropagation();
109
- if (window.__veDragging || window.__veScrolling) return;
110
- hoveredAnnotationClear && hoveredAnnotationClear(true, { editorName });
111
- }
112
- })
113
- );
@@ -1,15 +0,0 @@
1
- import { connectToEditor } from "../withEditorProps";
2
- import restrictionEnzymesSelector from "../selectors/restrictionEnzymesSelector";
3
-
4
- export const withRestrictionEnzymes = connectToEditor(
5
- (editorState, ownProps) => {
6
- const allRestrictionEnzymes = restrictionEnzymesSelector(
7
- editorState,
8
- ownProps.additionalEnzymes,
9
- ownProps.enzymeGroupsOverride
10
- );
11
- return {
12
- allRestrictionEnzymes
13
- };
14
- }
15
- );