@teselagen/ove 0.7.28 → 0.7.29
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.cjs.js +1055 -996
- package/index.es.js +1055 -996
- package/index.umd.js +189036 -0
- package/ove.css +1 -1
- package/package.json +2 -6
- package/src/helperComponents/PropertiesDialog/TranslationProperties.js +1 -1
- package/AASliver.js +0 -187
- package/AddLaddersDialog.js +0 -82
- package/AdditionalCutsiteInfoDialog.js +0 -599
- package/AlignmentVisibilityTool.js +0 -105
- package/AnnotationContainerHolder.js +0 -20
- package/AnnotationPositioner.js +0 -27
- package/AutoAnnotate.js +0 -501
- package/AutoAnnotateBpMatchingDialog.js +0 -208
- package/Axis.js +0 -151
- package/AxisNumbers.js +0 -35
- package/Browser.js +0 -106
- package/Caret.js +0 -63
- package/Chromatogram.js +0 -293
- package/CircularDnaSequence.js +0 -73
- package/CircularZoomMinimap.js +0 -16
- package/ColorPicker.js +0 -30
- package/CommandHotkeyHandler.js +0 -44
- package/CreateAnnotationsPage.js +0 -98
- package/Cutsite.js +0 -18
- package/CutsiteProperties.js +0 -176
- package/CutsiteSelectionLayers.js +0 -47
- package/Cutsites.js +0 -271
- package/DeletionLayer.js +0 -28
- package/DropHandler.css +0 -21
- package/DropHandler.js +0 -64
- package/EditCaretPosition.js +0 -234
- package/EditTrackNameDialog.js +0 -30
- package/Feature.js +0 -83
- package/FeatureProperties.js +0 -6
- package/FillWindow.js +0 -47
- package/GenbankView.js +0 -74
- package/GeneralProperties.js +0 -117
- package/GenericAnnotationProperties.js +0 -406
- package/GlobalDialog.js +0 -73
- package/GlobalDialogUtils.js +0 -110
- package/GoToDialog.js +0 -25
- package/HorizontalPanelDragHandle.js +0 -35
- package/Keyboard.js +0 -85
- package/Labels.js +0 -327
- package/Ladder.css +0 -20
- package/Ladder.js +0 -303
- package/MeltingTemp.js +0 -85
- package/Menlo.ttf +0 -0
- package/Minimap.js +0 -515
- package/Mismatches.js +0 -134
- package/Monaco.ttf +0 -0
- package/MultipleSeqsDetectedOnImportDialog.js +0 -74
- package/Orf.js +0 -109
- package/OrfProperties.js +0 -117
- package/Orfs.js +0 -35
- package/PCRTool.js +0 -179
- package/PairwiseAlignmentView.js +0 -68
- package/Part.js +0 -34
- package/PartProperties.js +0 -9
- package/PassThrough.js +0 -3
- package/PerformantSelectionLayer.js +0 -32
- package/PinchHelper.js +0 -24
- package/PointedAnnotation.js +0 -347
- package/PositionAnnotationOnCircle.js +0 -26
- package/Primer.js +0 -41
- package/PrimerProperties.js +0 -19
- package/ReflexContainer.js +0 -802
- package/ReflexElement.js +0 -160
- package/ReflexEvents.js +0 -77
- package/ReflexSplitter.js +0 -205
- package/RenameSequenceDialog.js +0 -7
- package/RotateCircularViewSlider.js +0 -93
- package/SelectDialog.js +0 -150
- package/SequenceName.js +0 -15
- package/SimpleCircularOrLinearView.js +0 -381
- package/SimpleOligoPreview.js +0 -39
- package/SingleEnzymeCutsiteInfo.js +0 -139
- package/ToolbarItem.js +0 -192
- package/Translation.js +0 -198
- package/TranslationProperties.js +0 -149
- package/UncontrolledSliderWithPlusMinusBtns.css +0 -5
- package/UncontrolledSliderWithPlusMinusBtns.js +0 -134
- package/VeTopRightContainer.js +0 -12
- package/ZoomCircularViewSlider.js +0 -62
- package/ZoomLinearView.js +0 -47
- package/addAlignment.js +0 -6
- package/addMetaToActionCreators.js +0 -12
- package/addWrappedAddons.js +0 -20
- package/alignmentTool.js +0 -503
- package/alignments.js +0 -379
- package/annotationLabelVisibility.js +0 -2
- package/annotationSearchSelector.js +0 -24
- package/annotationTypes.js +0 -35
- package/annotationVisibility.js +0 -196
- package/annotationsToSupport.js +0 -104
- package/arrayToObjWithIds.js +0 -17
- package/arrayUtils.js +0 -19
- package/array_move.js +0 -10
- package/calculateTickMarkPositionsForGivenRange.js +0 -47
- package/caretPosition.js +0 -27
- package/cdsFeaturesSelector.js +0 -9
- package/charWidth.js +0 -22
- package/circular.js +0 -19
- package/circularSelector.js +0 -4
- package/clickAndDragUtils.js +0 -576
- package/coerceInitialValue.js +0 -7
- package/combineReducersDontIgnoreKeys.js +0 -12
- package/commandUtils.js +0 -20
- package/constants.js +0 -2
- package/copyOptions.js +0 -34
- package/createFragmentLines.js +0 -120
- package/createMergedDefaultStateReducer.js +0 -30
- package/createMetaAction.js +0 -12
- package/createSequenceInputPopup.js +0 -290
- package/createSequenceInputPopupStyle.css +0 -87
- package/createSimpleDialog.js +0 -89
- package/createYourOwnEnzyme.js +0 -39
- package/cutsiteLabelColorSelector.js +0 -6
- package/cutsiteTool.js +0 -88
- package/cutsitesByRangeSelector.js +0 -5
- package/cutsitesSelector.js +0 -61
- package/darkmode.css +0 -98
- package/defaultConfig.js +0 -150
- package/deletionLayers.js +0 -36
- package/description.js +0 -21
- package/digestTool.js +0 -34
- package/dnaToColor.js +0 -17
- package/downloadTool.js +0 -39
- package/draggableClassnames.js +0 -5
- package/drawAnnotations.js +0 -440
- package/drawDirectedPiePiece.js +0 -142
- package/editTool.js +0 -49
- package/editorSelector.js +0 -2
- package/editorUtils.js +0 -205
- package/estimateRowHeight.js +0 -184
- package/featureLengthsToHide.js +0 -27
- package/featureTool.js +0 -34
- package/features.js +0 -19
- package/featuresSelector.js +0 -8
- package/filteredCutsitesSelector.js +0 -136
- package/filteredFeaturesSelector.js +0 -32
- package/filteredPartsSelector.js +0 -57
- package/filteredPrimersSelector.js +0 -27
- package/filteredRestrictionEnzymesSelector.js +0 -1
- package/find.png +0 -0
- package/findTool.js +0 -79
- package/findToolConstants.js +0 -1
- package/frameTranslations.js +0 -52
- package/fullscreen.png +0 -0
- package/getAdditionalEnzymesSelector.js +0 -46
- package/getAngleForPositionMidpoint.js +0 -3
- package/getAnnotationClassnames.js +0 -12
- package/getAnnotationNameAndStartStopString.js +0 -61
- package/getBpsPerRow.js +0 -19
- package/getCutsiteLabelHeights.js +0 -56
- package/getGapMap.js +0 -12
- package/getGaps.js +0 -27
- package/getInternalLabel.js +0 -40
- package/getOveHotkeyDefs.js +0 -12
- package/getPairwiseOverviewLinearViewOptions.js +0 -38
- package/getRangeAnglesSpecial.js +0 -12
- package/getStructuredBases.js +0 -97
- package/getTrackFromEvent.js +0 -25
- package/getVisibleStartEnd.js +0 -7
- package/getXStartAndWidthFromNonCircularRange.js +0 -12
- package/getXStartAndWidthOfRangeWrtRow.js +0 -27
- package/getXStartAndWidthOfRowAnnotation.js +0 -19
- package/getYOffset.js +0 -15
- package/hoveredAnnotation.js +0 -24
- package/importTool.js +0 -27
- package/index.js +0 -71
- package/inlineFindTool.js +0 -38
- package/isElementInViewport.js +0 -29
- package/isEnzymeFilterAndSelector.js +0 -1
- package/isTargetWithinEl.js +0 -6
- package/labelLineIntensity.js +0 -25
- package/labelSize.js +0 -23
- package/ladderDefaults.js +0 -25
- package/lastSavedId.js +0 -20
- package/lineageLines.js +0 -11
- package/linear.png +0 -0
- package/makeStore.js +0 -34
- package/massageTickSpacing.js +0 -19
- package/materiallyAvailable.js +0 -19
- package/middleware.js +0 -112
- package/minimumOrfSize.js +0 -24
- package/minimumOrfSizeSelector.js +0 -2
- package/modalActions.js +0 -3
- package/moveCaret.js +0 -58
- package/name.js +0 -19
- package/normalizeAngle.js +0 -3
- package/normalizeAngleRange.js +0 -9
- package/oligoTool.js +0 -30
- package/onlyUpdateForKeysDeep.js +0 -31
- package/orfFrameToColorMap.js +0 -10
- package/orfTool.js +0 -136
- package/orfsSelector.js +0 -15
- package/panelsShown.js +0 -294
- package/partLengthsToHide.js +0 -23
- package/partOverhangs.js +0 -6
- package/partTagSearch.js +0 -69
- package/partTool.js +0 -45
- package/parts.js +0 -19
- package/partsSelector.js +0 -8
- package/pie.png +0 -0
- package/polarToSpecialCartesian.js +0 -7
- package/positionCutsites.js +0 -6
- package/prepareRowData.js +0 -64
- package/primerBases.js +0 -221
- package/primerLengthsToHide.js +0 -27
- package/primers.js +0 -19
- package/primersSelector.js +0 -8
- package/print.png +0 -0
- package/printTool.js +0 -31
- package/propertiesTool.js +0 -40
- package/proteinUtils.js +0 -3
- package/pureNoFunc.js +0 -18
- package/readOnly.js +0 -25
- package/redoTool.js +0 -30
- package/reflex-styles.css +0 -128
- package/reflex-styles.css.map +0 -9
- package/relaxLabelAngles.js +0 -157
- package/relaxLabels_DEPRECATED.js +0 -105
- package/replacementLayers.js +0 -36
- package/restrictionEnzymes.js +0 -52
- package/restrictionEnzymesSelector.js +0 -34
- package/rowviewContants.js +0 -3
- package/ruler.css +0 -89
- package/save.png +0 -0
- package/saveTool.js +0 -44
- package/searchLayersSelector.js +0 -71
- package/selectedAnnotations.js +0 -89
- package/selectedAnnotationsSelector.js +0 -1
- package/selectedCutsitesSelector.js +0 -21
- package/selectedPartTags.js +0 -21
- package/selectionLayer.js +0 -25
- package/sequence.js +0 -12
- package/sequenceDataHistory.js +0 -43
- package/sequenceDataSelector.js +0 -2
- package/sequenceLengthSelector.js +0 -5
- package/sequenceSelector.js +0 -4
- package/sharedActionCreators.js +0 -0
- package/shouldFlipText.js +0 -4
- package/shouldRerender.js +0 -27
- package/showFileDialog.js +0 -25
- package/showGCContent.js +0 -23
- package/show_cut_sites.png +0 -0
- package/show_features.png +0 -0
- package/show_orfs.png +0 -0
- package/show_primers.png +0 -0
- package/simpleDialog.css +0 -13
- package/specialCutsiteFilterOptions.js +0 -22
- package/style.css +0 -10
- package/tagsToBoldSelector.js +0 -2
- package/toggle_views.svg +0 -1
- package/toolBar.js +0 -23
- package/translationSearchMatchesSelector.js +0 -14
- package/translations.js +0 -20
- package/translationsRawSelector.js +0 -8
- package/translationsSelector.js +0 -137
- package/typeField.js +0 -24
- package/undoTool.js +0 -30
- package/updateEditor.js +0 -200
- package/updateLabelsForInViewFeatures.js +0 -55
- package/updateLabelsForInViewFeaturesCircView.js +0 -41
- package/updateTrackHelper.js +0 -58
- package/uppercaseSequenceMapFont.js +0 -25
- package/upsertDeleteActionGenerator.js +0 -31
- package/useAAColorType.js +0 -8
- package/useAdditionalOrfStartCodons.js +0 -24
- package/useAnnotationLimits.js +0 -42
- package/useChromatogramPrefs.js +0 -31
- package/useFormValue.js +0 -7
- package/useLadders.js +0 -6
- package/useMeltingTemp.js +0 -7
- package/useTmType.js +0 -10
- package/userDefinedHandlersAndOpts.js +0 -61
- package/utils.js +0 -37
- package/versionHistory.js +0 -26
- package/versionHistoryTool.js +0 -21
- package/viewSubmenu.js +0 -479
- package/visibilityTool.js +0 -39
- package/withHover.js +0 -113
- package/withRestrictionEnzymes.js +0 -15
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import React from "react";
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import { Icon, Slider, Intent } from "@blueprintjs/core";
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import { preventDefaultStopPropagation } from "../utils/editorUtils";
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import "./UncontrolledSliderWithPlusMinusBtns.css";
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export default class UncontrolledSliderWithPlusMinusBtns extends React.Component {
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state = { value: 0 };
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static getDerivedStateFromProps(nextProps, prevState) {
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) {
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: nextProps.initialValue;
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return {
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const {
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title,
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initialValue,
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label,
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passedRef,
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clickStepSize,
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style,
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onClick,
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smallSlider,
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bindOutsideChangeHelper,
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className,
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...rest
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return (
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<div
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}}
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title={title}
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style={{ ...style, display: "flex", marginLeft: 15, marginRight: 20 }}
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>
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/>
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/>
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);
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package/VeTopRightContainer.js
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import UncontrolledSliderWithPlusMinusBtns from "../helperComponents/UncontrolledSliderWithPlusMinusBtns";
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export function ZoomCircularViewSlider({
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}) {
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|
-
}
|
|
29
|
-
}, 0);
|
|
30
|
-
}
|
|
31
|
-
return (
|
|
32
|
-
<div
|
|
33
|
-
style={{
|
|
34
|
-
position: "absolute",
|
|
35
|
-
left: smallSlider ? 100 : 150,
|
|
36
|
-
top: 0,
|
|
37
|
-
zIndex: 900
|
|
38
|
-
}}
|
|
39
|
-
>
|
|
40
|
-
<UncontrolledSliderWithPlusMinusBtns
|
|
41
|
-
bindOutsideChangeHelper={zoomHelper.current}
|
|
42
|
-
onChange={setZoom}
|
|
43
|
-
onRelease={setZoom}
|
|
44
|
-
title="Adjust Zoom Level"
|
|
45
|
-
style={{
|
|
46
|
-
paddingTop: "4px",
|
|
47
|
-
width: smallSlider ? SLIDER_SMALL_WIDTH : SLIDER_NORM_WIDTH
|
|
48
|
-
}}
|
|
49
|
-
smallSlider
|
|
50
|
-
noWraparound
|
|
51
|
-
className="veZoomCircularSlider ove-slider"
|
|
52
|
-
labelRenderer={false}
|
|
53
|
-
stepSize={stepSize}
|
|
54
|
-
clickStepSize={clickStepSize}
|
|
55
|
-
initialValue={zoomLevel || 1}
|
|
56
|
-
justUpdateInitialValOnce
|
|
57
|
-
max={maxZoomLevel || 14}
|
|
58
|
-
min={min}
|
|
59
|
-
/>
|
|
60
|
-
</div>
|
|
61
|
-
);
|
|
62
|
-
}
|
package/ZoomLinearView.js
DELETED
|
@@ -1,47 +0,0 @@
|
|
|
1
|
-
import React from "react";
|
|
2
|
-
import { SLIDER_NORM_WIDTH, SLIDER_SMALL_WIDTH } from "../constants/constants";
|
|
3
|
-
import UncontrolledSliderWithPlusMinusBtns from "../helperComponents/UncontrolledSliderWithPlusMinusBtns";
|
|
4
|
-
import { scrollToCaret } from "./index";
|
|
5
|
-
|
|
6
|
-
export function ZoomLinearView({
|
|
7
|
-
setCharWidth,
|
|
8
|
-
minCharWidth,
|
|
9
|
-
bindOutsideChangeHelper,
|
|
10
|
-
afterOnChange,
|
|
11
|
-
smallSlider
|
|
12
|
-
}) {
|
|
13
|
-
return (
|
|
14
|
-
<div className="tg-zoom-bar" style={{ zIndex: 900, position: "absolute" }}>
|
|
15
|
-
<UncontrolledSliderWithPlusMinusBtns
|
|
16
|
-
noWraparound
|
|
17
|
-
bindOutsideChangeHelper={bindOutsideChangeHelper}
|
|
18
|
-
onClick={() => {
|
|
19
|
-
setTimeout(scrollToCaret, 0);
|
|
20
|
-
}}
|
|
21
|
-
onChange={zoomLvl => {
|
|
22
|
-
//zoomLvl is in the range of 0 to 10
|
|
23
|
-
const scaleFactor = Math.pow(12 / minCharWidth, 1 / 10);
|
|
24
|
-
const newCharWidth = minCharWidth * Math.pow(scaleFactor, zoomLvl);
|
|
25
|
-
setCharWidth(newCharWidth);
|
|
26
|
-
scrollToCaret();
|
|
27
|
-
afterOnChange && afterOnChange();
|
|
28
|
-
}}
|
|
29
|
-
leftIcon="minus"
|
|
30
|
-
rightIcon="plus"
|
|
31
|
-
title="Zoom"
|
|
32
|
-
smallSlider
|
|
33
|
-
style={{
|
|
34
|
-
paddingTop: "4px",
|
|
35
|
-
width: smallSlider ? SLIDER_SMALL_WIDTH : SLIDER_NORM_WIDTH
|
|
36
|
-
}}
|
|
37
|
-
className="veZoomLinearSlider ove-slider"
|
|
38
|
-
labelRenderer={false}
|
|
39
|
-
stepSize={0.05}
|
|
40
|
-
clickStepSize={0.5}
|
|
41
|
-
initialValue={0}
|
|
42
|
-
max={10}
|
|
43
|
-
min={0}
|
|
44
|
-
></UncontrolledSliderWithPlusMinusBtns>
|
|
45
|
-
</div>
|
|
46
|
-
);
|
|
47
|
-
}
|
package/addAlignment.js
DELETED
|
@@ -1,12 +0,0 @@
|
|
|
1
|
-
export default function addMetaToActionCreators(actions, meta) {
|
|
2
|
-
const metaActions = {};
|
|
3
|
-
Object.keys(actions).forEach(function (actionName) {
|
|
4
|
-
metaActions[actionName] = function (firstArg, additionalMeta) {
|
|
5
|
-
return actions[actionName](firstArg, {
|
|
6
|
-
...meta,
|
|
7
|
-
...(additionalMeta || {})
|
|
8
|
-
});
|
|
9
|
-
};
|
|
10
|
-
});
|
|
11
|
-
return metaActions;
|
|
12
|
-
}
|
package/addWrappedAddons.js
DELETED
|
@@ -1,20 +0,0 @@
|
|
|
1
|
-
import { flatMap } from "lodash-es";
|
|
2
|
-
import { normalizePositionByRangeLength } from "@teselagen/range-utils";
|
|
3
|
-
|
|
4
|
-
export function addWrappedAddons(anns, seqLen) {
|
|
5
|
-
return flatMap(anns, ann => {
|
|
6
|
-
if (ann.overlapsSelf) {
|
|
7
|
-
return [
|
|
8
|
-
ann,
|
|
9
|
-
{
|
|
10
|
-
...ann,
|
|
11
|
-
start: normalizePositionByRangeLength(ann.end + 1, seqLen),
|
|
12
|
-
end: normalizePositionByRangeLength(ann.start - 1, seqLen),
|
|
13
|
-
isWrappedAddon: true,
|
|
14
|
-
rangeTypeOverride: "middle" //we add this rangeTypeOverride here to get the wrapping piece to draw differently than normal
|
|
15
|
-
}
|
|
16
|
-
];
|
|
17
|
-
}
|
|
18
|
-
return [ann];
|
|
19
|
-
});
|
|
20
|
-
}
|