@teselagen/ove 0.5.12 → 0.5.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AlignmentTool/index.d.ts +4 -6
- package/index.cjs.js +399 -351
- package/index.es.js +399 -351
- package/index.umd.js +437 -363
- package/package.json +2 -2
- package/src/AlignmentTool/index.js +7 -11
- package/src/RowItem/Translations/AASliver.js +12 -11
- package/src/RowItem/Translations/Translation.js +41 -9
package/index.es.js
CHANGED
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@@ -56,7 +56,7 @@ var __async = (__this, __arguments, generator) => {
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step2((generator = generator.apply(__this, __arguments)).next());
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});
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};
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var
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var _s, _t, _u, _v, _w, _z, _C, _J;
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import { Icon, Classes, Button, Intent, Keys, MenuItem, Tag, useHotkeys, Popover, Tooltip, Toaster, Position, Menu, MenuDivider, NumericInput, InputGroup, Spinner, FormGroup, TextArea, Checkbox, Switch, EditableText, RadioGroup, Callout, ContextMenu, Dialog, Card, Tabs, Tab, Colors, KeyCombo, AnchorButton, Slider as Slider$1, ButtonGroup, HTMLSelect, Label, ResizeSensor, FocusStyleManager } from "@blueprintjs/core";
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import * as React$2 from "react";
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import React__default$1, { useState, useEffect, forwardRef, useImperativeHandle, Fragment, useMemo as useMemo$1, useRef, useReducer, useCallback as useCallback$1, memo, Component, PureComponent, createElement, isValidElement, useContext, useLayoutEffect as useLayoutEffect$1 } from "react";
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var _objectGops = {};
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_objectGops.f = Object.getOwnPropertySymbols;
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var toObject2 = _toObject;
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var IObject2 =
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var IObject2 = _iobject;
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var $defineProperty$3 = require_objectDp();
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var hiddenKeys = _enumBugKeys.concat("length", "prototype");
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_objectGopn.f = Object.getOwnPropertyNames || /* @__PURE__ */ __name(function getOwnPropertyNames4(O2) {
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_objectGopnExt.f = /* @__PURE__ */ __name(function getOwnPropertyNames(it) {
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$defineProperty$2(OPSymbols, key, D2);
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var $create = /* @__PURE__ */ __name(function create2(it, P2) {
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var $getOwnPropertyNames = /* @__PURE__ */ __name(function getOwnPropertyNames2(it) {
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require_objectGopn().f = gOPNExt.f = $getOwnPropertyNames;
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};
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const iconProps = {
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iconProps.iconSize = size;
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const IconInner = /* @__PURE__ */ React__default$1.createElement(IconToUse, __spreadValues(__spreadValues({}, iconProps), rest));
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let toReturn;
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const toolTipOrPopoverProps = __spreadValues({
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disabled: disabled || !isPopover && window.Cypress && !window.Cypress.allowInfoHelperTooltips,
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popoverClassName: "tg-info-helper-popover bp3-tooltip",
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content: content2 || children,
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}, popoverProps);
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toReturn = /* @__PURE__ */ React__default$1.createElement(React__default$1.Fragment, null, IconInner, /* @__PURE__ */ React__default$1.createElement("span", { style: { paddingLeft: 5, fontStyle: "italic" } }, content2 || children));
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} else if (isPopover) {
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toReturn = /* @__PURE__ */ React__default$1.createElement(Popover, __spreadProps(__spreadValues({}, toolTipOrPopoverProps), { target: IconInner }));
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} else {
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toReturn = /* @__PURE__ */ React__default$1.createElement(Tooltip, __spreadProps(__spreadValues({}, toolTipOrPopoverProps), { target: IconInner }));
|
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}
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|
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|
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const El = isInline ? "span" : "div";
|
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|
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return /* @__PURE__ */ React__default$1.createElement(
|
|
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|
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El,
|
|
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|
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{
|
|
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|
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style: __spreadValues(__spreadValues(__spreadValues({}, clickable ? { cursor: "pointer" } : {}), isInline ? {} : { display: "flex" }), style2),
|
|
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|
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className: classNames(
|
|
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|
+
"info-helper-wrapper",
|
|
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|
+
{
|
|
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|
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"info-helper-wrapper-noMarginTop": noMarginTop,
|
|
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|
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"info-helper-clickable": isPopover
|
|
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|
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},
|
|
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|
+
className
|
|
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|
+
)
|
|
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|
+
},
|
|
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|
+
toReturn
|
|
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|
+
);
|
|
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|
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}, "InfoHelper");
|
|
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|
const getIdOrCodeOrIndex = /* @__PURE__ */ __name((record, rowIndex) => {
|
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|
if (record.id || record.id === 0) {
|
|
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|
return record.id;
|
|
@@ -37280,16 +37275,25 @@ var getIntrinsic = /* @__PURE__ */ __name(function GetIntrinsic(name2, allowMiss
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|
return value;
|
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|
}, "GetIntrinsic");
|
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|
var callBind$3 = { exports: {} };
|
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|
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var
|
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|
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var
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|
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|
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|
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|
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|
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var esDefineProperty;
|
|
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|
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var hasRequiredEsDefineProperty;
|
|
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|
+
function requireEsDefineProperty() {
|
|
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|
+
if (hasRequiredEsDefineProperty)
|
|
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|
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return esDefineProperty;
|
|
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|
+
hasRequiredEsDefineProperty = 1;
|
|
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|
+
var GetIntrinsic3 = getIntrinsic;
|
|
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|
+
var $defineProperty2 = GetIntrinsic3("%Object.defineProperty%", true) || false;
|
|
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|
+
if ($defineProperty2) {
|
|
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|
+
try {
|
|
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|
+
$defineProperty2({}, "a", { value: 1 });
|
|
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|
+
} catch (e2) {
|
|
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|
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$defineProperty2 = false;
|
|
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|
+
}
|
|
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|
}
|
|
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|
+
esDefineProperty = $defineProperty2;
|
|
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|
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return esDefineProperty;
|
|
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|
}
|
|
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|
-
|
|
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|
+
__name(requireEsDefineProperty, "requireEsDefineProperty");
|
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|
var GetIntrinsic$3 = getIntrinsic;
|
|
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|
var $gOPD$1 = GetIntrinsic$3("%Object.getOwnPropertyDescriptor%", true);
|
|
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|
if ($gOPD$1) {
|
|
@@ -37300,7 +37304,7 @@ if ($gOPD$1) {
|
|
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|
}
|
|
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|
}
|
|
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|
var gopd$1 = $gOPD$1;
|
|
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|
-
var $defineProperty$1 =
|
|
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|
+
var $defineProperty$1 = requireEsDefineProperty();
|
|
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|
var $SyntaxError = syntax;
|
|
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|
var $TypeError$4 = type$1;
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|
var gopd = gopd$1;
|
|
@@ -37341,7 +37345,7 @@ var defineDataProperty$1 = /* @__PURE__ */ __name(function defineDataProperty(ob
|
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|
throw new $SyntaxError("This environment does not support defining a property as non-configurable, non-writable, or non-enumerable.");
|
|
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|
}
|
|
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|
}, "defineDataProperty");
|
|
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|
-
var $defineProperty =
|
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|
+
var $defineProperty = requireEsDefineProperty();
|
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|
var hasPropertyDescriptors = /* @__PURE__ */ __name(function hasPropertyDescriptors2() {
|
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|
return !!$defineProperty;
|
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|
}, "hasPropertyDescriptors");
|
|
@@ -37410,7 +37414,7 @@ var setFunctionLength = /* @__PURE__ */ __name(function setFunctionLength2(fn4,
|
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|
var $apply = GetIntrinsic3("%Function.prototype.apply%");
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|
var $call = GetIntrinsic3("%Function.prototype.call%");
|
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|
var $reflectApply = GetIntrinsic3("%Reflect.apply%", true) || bind3.call($call, $apply);
|
|
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|
-
var $defineProperty2 =
|
|
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|
+
var $defineProperty2 = requireEsDefineProperty();
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|
var $max = GetIntrinsic3("%Math.max%");
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|
module2.exports = /* @__PURE__ */ __name(function callBind2(originalFunction) {
|
|
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|
if (typeof originalFunction !== "function") {
|
|
@@ -48396,8 +48400,8 @@ const renderReactSelect = /* @__PURE__ */ __name((props) => {
|
|
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|
});
|
|
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|
return /* @__PURE__ */ React__default$1.createElement(TgSelect$1, __spreadValues({}, propsToUse));
|
|
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|
}, "renderReactSelect");
|
|
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|
-
const BPSelect = /* @__PURE__ */ __name((
|
|
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|
-
var
|
|
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|
+
const BPSelect = /* @__PURE__ */ __name((_e) => {
|
|
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|
+
var _f = _e, { value, onChange } = _f, rest = __objRest(_f, ["value", "onChange"]);
|
|
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|
return renderSelect(__spreadProps(__spreadValues({}, rest), { input: { onChange, value } }));
|
|
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|
}, "BPSelect");
|
|
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|
const renderSelect = /* @__PURE__ */ __name((props) => {
|
|
@@ -48532,12 +48536,12 @@ const renderBlueprintNumericInput = /* @__PURE__ */ __name((props) => {
|
|
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|
})
|
|
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|
);
|
|
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|
}, "renderBlueprintNumericInput");
|
|
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|
-
const renderBlueprintRadioGroup = /* @__PURE__ */ __name((
|
|
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|
-
var
|
|
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|
+
const renderBlueprintRadioGroup = /* @__PURE__ */ __name((_g) => {
|
|
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|
+
var _h = _g, {
|
|
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|
input,
|
|
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|
options,
|
|
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|
onFieldSubmit
|
|
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|
-
} =
|
|
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|
+
} = _h, rest = __objRest(_h, [
|
|
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|
"input",
|
|
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48546
|
"options",
|
|
48543
48547
|
"onFieldSubmit"
|
|
@@ -49877,7 +49881,7 @@ var KNOWN_STATICS = {
|
|
|
49877
49881
|
arity: true
|
|
49878
49882
|
};
|
|
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|
var defineProperty$3 = Object.defineProperty;
|
|
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|
-
var
|
|
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|
+
var getOwnPropertyNames3 = Object.getOwnPropertyNames;
|
|
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|
var getOwnPropertySymbols3 = Object.getOwnPropertySymbols;
|
|
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49886
|
var getOwnPropertyDescriptor3 = Object.getOwnPropertyDescriptor;
|
|
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49887
|
var getPrototypeOf = Object.getPrototypeOf;
|
|
@@ -49890,7 +49894,7 @@ function hoistNonReactStatics(targetComponent, sourceComponent, blacklist) {
|
|
|
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49894
|
hoistNonReactStatics(targetComponent, inheritedComponent, blacklist);
|
|
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|
}
|
|
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49896
|
}
|
|
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|
-
var keys5 =
|
|
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|
+
var keys5 = getOwnPropertyNames3(sourceComponent);
|
|
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49898
|
if (getOwnPropertySymbols3) {
|
|
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49899
|
keys5 = keys5.concat(getOwnPropertySymbols3(sourceComponent));
|
|
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|
}
|
|
@@ -51781,8 +51785,8 @@ const _DataTable = class _DataTable extends React__default$1.Component {
|
|
|
51781
51785
|
};
|
|
51782
51786
|
}),
|
|
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51787
|
branch(({ immovable }) => "true" !== immovable, sortableElement)
|
|
51784
|
-
)((
|
|
51785
|
-
var
|
|
51788
|
+
)((_i) => {
|
|
51789
|
+
var _j = _i, { toggleSort, className, children } = _j, rest = __objRest(_j, ["toggleSort", "className", "children"]);
|
|
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|
return /* @__PURE__ */ React__default$1.createElement(
|
|
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51791
|
"div",
|
|
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51792
|
__spreadValues({
|
|
@@ -54041,13 +54045,13 @@ function getCellInfo({
|
|
|
54041
54045
|
};
|
|
54042
54046
|
}
|
|
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|
__name(getCellInfo, "getCellInfo");
|
|
54044
|
-
function ColumnFilterMenu(
|
|
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|
-
var
|
|
54048
|
+
function ColumnFilterMenu(_k) {
|
|
54049
|
+
var _l = _k, {
|
|
54046
54050
|
FilterMenu,
|
|
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54051
|
filterActiveForColumn,
|
|
54048
54052
|
compact: compact3,
|
|
54049
54053
|
extraCompact
|
|
54050
|
-
} =
|
|
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|
+
} = _l, rest = __objRest(_l, [
|
|
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|
"FilterMenu",
|
|
54052
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|
"filterActiveForColumn",
|
|
54053
54057
|
"compact",
|
|
@@ -56904,8 +56908,8 @@ function maybeStripIdFromEntities(ents, validateAgainstSchema) {
|
|
|
56904
56908
|
return toRet == null ? void 0 : toRet.map((e2) => omit$3(e2, ["_isClean"]));
|
|
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56909
|
}
|
|
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56910
|
__name(maybeStripIdFromEntities, "maybeStripIdFromEntities");
|
|
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|
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const useDialog = /* @__PURE__ */ __name((
|
|
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|
-
var
|
|
56911
|
+
const useDialog = /* @__PURE__ */ __name((_m) => {
|
|
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|
+
var _n = _m, { ModalComponent } = _n, rest = __objRest(_n, ["ModalComponent"]);
|
|
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56913
|
const [isOpen, setOpen] = useState(false);
|
|
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|
const [additionalProps, setAdditionalProps] = useState(false);
|
|
56911
56915
|
const comp = /* @__PURE__ */ React__default$1.createElement(
|
|
@@ -67434,68 +67438,55 @@ function BounceLoader({ style: style2, className }) {
|
|
|
67434
67438
|
);
|
|
67435
67439
|
}
|
|
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|
__name(BounceLoader, "BounceLoader");
|
|
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|
-
const
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
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|
|
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|
-
|
|
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|
-
|
|
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|
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|
|
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|
+
const Loading = /* @__PURE__ */ __name(({
|
|
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|
+
loading,
|
|
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|
+
style: userStyle,
|
|
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|
+
className,
|
|
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|
+
containerStyle = {},
|
|
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|
+
children,
|
|
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|
+
displayInstantly = false,
|
|
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|
+
bounce = false,
|
|
67449
|
+
withTimeout,
|
|
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|
+
inDialog,
|
|
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|
+
centeredInPage
|
|
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|
+
}) => {
|
|
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|
+
const [longerThan200MS, setLongerThan200MS] = useState(false);
|
|
67454
|
+
useEffect(() => {
|
|
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|
+
const timeoutId = setTimeout(() => {
|
|
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|
+
setLongerThan200MS(true);
|
|
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67457
|
}, 200);
|
|
67450
|
-
|
|
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|
-
|
|
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|
-
|
|
67453
|
-
}
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
containerStyle = {},
|
|
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|
-
children,
|
|
67461
|
-
displayInstantly = false,
|
|
67462
|
-
bounce = false,
|
|
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|
-
withTimeout,
|
|
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|
-
inDialog,
|
|
67465
|
-
centeredInPage
|
|
67466
|
-
} = this.props;
|
|
67467
|
-
const { longerThan200MS } = this.state;
|
|
67468
|
-
const style2 = __spreadValues(__spreadValues({}, userStyle), inDialog && { minHeight: 120 });
|
|
67469
|
-
const LoaderComp = bounce || inDialog ? BounceLoader : DNALoader;
|
|
67470
|
-
if (loading || !children) {
|
|
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|
-
if (!displayInstantly && !longerThan200MS && (!bounce && !inDialog || withTimeout)) {
|
|
67472
|
-
return /* @__PURE__ */ React__default$1.createElement("div", null);
|
|
67473
|
-
}
|
|
67474
|
-
return /* @__PURE__ */ React__default$1.createElement(
|
|
67475
|
-
"div",
|
|
67476
|
-
{
|
|
67477
|
-
className: "tg-loader-container tg-flex justify-center align-center",
|
|
67478
|
-
style: __spreadValues(__spreadValues({
|
|
67479
|
-
width: "100%"
|
|
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|
-
}, containerStyle), centeredInPage && {
|
|
67481
|
-
width: void 0,
|
|
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|
-
zIndex: 20,
|
|
67483
|
-
height: 10,
|
|
67484
|
-
position: "fixed",
|
|
67485
|
-
top: "50%",
|
|
67486
|
-
left: "50%",
|
|
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|
-
transform: "translate(-50%, 0)"
|
|
67488
|
-
})
|
|
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|
-
},
|
|
67490
|
-
/* @__PURE__ */ React__default$1.createElement(LoaderComp, { style: style2, className })
|
|
67491
|
-
);
|
|
67492
|
-
} else {
|
|
67493
|
-
return children || null;
|
|
67458
|
+
return () => {
|
|
67459
|
+
clearTimeout(timeoutId);
|
|
67460
|
+
};
|
|
67461
|
+
}, []);
|
|
67462
|
+
const style2 = __spreadValues(__spreadValues({}, userStyle), inDialog && { minHeight: 120 });
|
|
67463
|
+
const LoaderComp = bounce || inDialog ? BounceLoader : DNALoader;
|
|
67464
|
+
if (loading || !children) {
|
|
67465
|
+
if (!displayInstantly && !longerThan200MS && (!bounce && !inDialog || withTimeout)) {
|
|
67466
|
+
return /* @__PURE__ */ React__default$1.createElement("div", null);
|
|
67494
67467
|
}
|
|
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|
+
return /* @__PURE__ */ React__default$1.createElement(
|
|
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|
+
"div",
|
|
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|
+
{
|
|
67471
|
+
className: "tg-loader-container tg-flex justify-center align-center",
|
|
67472
|
+
style: __spreadValues(__spreadValues({
|
|
67473
|
+
width: "100%"
|
|
67474
|
+
}, containerStyle), centeredInPage && {
|
|
67475
|
+
width: void 0,
|
|
67476
|
+
zIndex: 20,
|
|
67477
|
+
height: 10,
|
|
67478
|
+
position: "fixed",
|
|
67479
|
+
top: "50%",
|
|
67480
|
+
left: "50%",
|
|
67481
|
+
transform: "translate(-50%, 0)"
|
|
67482
|
+
})
|
|
67483
|
+
},
|
|
67484
|
+
/* @__PURE__ */ React__default$1.createElement(LoaderComp, { style: style2, className })
|
|
67485
|
+
);
|
|
67486
|
+
} else {
|
|
67487
|
+
return children || null;
|
|
67495
67488
|
}
|
|
67496
|
-
};
|
|
67497
|
-
__name(_Loading, "Loading");
|
|
67498
|
-
let Loading = _Loading;
|
|
67489
|
+
}, "Loading");
|
|
67499
67490
|
function AdvancedOptions({
|
|
67500
67491
|
children,
|
|
67501
67492
|
content: content2,
|
|
@@ -67528,14 +67519,14 @@ function AdvancedOptions({
|
|
|
67528
67519
|
), isOpen && /* @__PURE__ */ React__default$1.createElement("div", { style: { marginTop: 10 } }, content2 || children));
|
|
67529
67520
|
}
|
|
67530
67521
|
__name(AdvancedOptions, "AdvancedOptions");
|
|
67531
|
-
function DropdownButton(
|
|
67532
|
-
var
|
|
67522
|
+
function DropdownButton(_o) {
|
|
67523
|
+
var _p = _o, {
|
|
67533
67524
|
disabled,
|
|
67534
67525
|
menu,
|
|
67535
67526
|
noRightIcon,
|
|
67536
67527
|
popoverProps,
|
|
67537
67528
|
className
|
|
67538
|
-
} =
|
|
67529
|
+
} = _p, rest = __objRest(_p, [
|
|
67539
67530
|
"disabled",
|
|
67540
67531
|
"menu",
|
|
67541
67532
|
"noRightIcon",
|
|
@@ -70894,14 +70885,14 @@ const EnhancedMenuItem = compose(
|
|
|
70894
70885
|
}
|
|
70895
70886
|
}),
|
|
70896
70887
|
branch(({ navTo }) => navTo, withRouter$1)
|
|
70897
|
-
)(function(
|
|
70898
|
-
var
|
|
70888
|
+
)(function(_q) {
|
|
70889
|
+
var _r = _q, {
|
|
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navTo,
|
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70891
|
context,
|
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|
staticContext,
|
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70893
|
didMount,
|
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|
willUnmount
|
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|
-
} =
|
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|
+
} = _r, props = __objRest(_r, [
|
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70896
|
"navTo",
|
|
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70897
|
"context",
|
|
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70898
|
"staticContext",
|
|
@@ -71095,7 +71086,7 @@ function doesSearchValMatchText(searchVal, justText) {
|
|
|
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71086
|
);
|
|
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71087
|
}
|
|
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71088
|
__name(doesSearchValMatchText, "doesSearchValMatchText");
|
|
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|
-
let MenuBar$1 = (
|
|
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|
+
let MenuBar$1 = (_s = class extends React__default$1.Component {
|
|
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71090
|
constructor(props) {
|
|
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71091
|
super(props);
|
|
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|
__publicField(this, "state", {
|
|
@@ -71340,10 +71331,10 @@ let MenuBar$1 = (_q = class extends React__default$1.Component {
|
|
|
71340
71331
|
);
|
|
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71332
|
}), extraContent);
|
|
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71333
|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_s, "MenuBar"), __publicField(_s, "defaultProps", {
|
|
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71335
|
className: "",
|
|
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71336
|
style: {}
|
|
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|
-
}),
|
|
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|
+
}), _s);
|
|
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71338
|
const isDivider = /* @__PURE__ */ __name((item) => item.divider !== void 0, "isDivider");
|
|
71348
71339
|
function getAllMenuTextsAndHandlers(menu, enhancers, context, path2 = []) {
|
|
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71340
|
if (!menu)
|
|
@@ -71491,7 +71482,7 @@ function HotkeysDialog(props) {
|
|
|
71491
71482
|
);
|
|
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71483
|
}
|
|
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71484
|
__name(HotkeysDialog, "HotkeysDialog");
|
|
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|
-
let FillWindow$1 = (
|
|
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|
+
let FillWindow$1 = (_t = class extends React__default$1.Component {
|
|
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71486
|
constructor(props) {
|
|
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71487
|
super(props);
|
|
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71488
|
rerenderOnWindowResize(this);
|
|
@@ -71539,7 +71530,7 @@ let FillWindow$1 = (_r = class extends React__default$1.Component {
|
|
|
71539
71530
|
return ReactDOM$1.createPortal(inner2, window.document.body);
|
|
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71531
|
return inner2;
|
|
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|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_t, "FillWindow"), _t);
|
|
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71534
|
var relativeTime$1 = { exports: {} };
|
|
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71535
|
(function(module2, exports2) {
|
|
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71536
|
!function(r2, e2) {
|
|
@@ -71587,16 +71578,6 @@ var relativeTime$1 = { exports: {} };
|
|
|
71587
71578
|
var relativeTimeExports = relativeTime$1.exports;
|
|
71588
71579
|
const relativeTime = /* @__PURE__ */ getDefaultExportFromCjs(relativeTimeExports);
|
|
71589
71580
|
dayjs.extend(relativeTime);
|
|
71590
|
-
const _Timeline = class _Timeline extends Component {
|
|
71591
|
-
render() {
|
|
71592
|
-
return /* @__PURE__ */ React__default$1.createElement("div", { className: "tg-timeline" }, this.props.children.length > 1 && /* @__PURE__ */ React__default$1.createElement("div", { className: "tg-timeline-line" }), this.props.children);
|
|
71593
|
-
}
|
|
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|
-
};
|
|
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|
-
__name(_Timeline, "Timeline");
|
|
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|
-
__publicField(_Timeline, "propTypes", {
|
|
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|
-
children: PropTypes.arrayOf(PropTypes.element)
|
|
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|
-
});
|
|
71599
|
-
let Timeline = _Timeline;
|
|
71600
71581
|
const ptIconWrapper = /* @__PURE__ */ __name((path2, viewboxDefault = 24, rest) => {
|
|
71601
71582
|
return /* @__PURE__ */ React__default$1.createElement("span", { className: "bp3-icon" }, /* @__PURE__ */ React__default$1.createElement(
|
|
71602
71583
|
"svg",
|
|
@@ -78910,123 +78891,167 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
|
|
|
78910
78891
|
return proteinAlphabet[letter.toUpperCase()];
|
|
78911
78892
|
}
|
|
78912
78893
|
__name(getAminoAcidFromSequenceTriplet, "getAminoAcidFromSequenceTriplet");
|
|
78913
|
-
function
|
|
78894
|
+
function getNextTriplet(index2, sequenceString, exonRange) {
|
|
78895
|
+
let triplet = "";
|
|
78896
|
+
let internalIndex;
|
|
78897
|
+
const codonPositions = [];
|
|
78898
|
+
const isBaseInExon = /* @__PURE__ */ __name((baseIndex) => exonRange.some(
|
|
78899
|
+
(r2) => isPositionWithinRange(baseIndex, r2, sequenceString.length, true, false)
|
|
78900
|
+
), "isBaseInExon");
|
|
78901
|
+
for (internalIndex = index2; internalIndex < sequenceString.length; internalIndex++) {
|
|
78902
|
+
if (triplet.length === 3) {
|
|
78903
|
+
break;
|
|
78904
|
+
}
|
|
78905
|
+
if (isBaseInExon(internalIndex)) {
|
|
78906
|
+
triplet += sequenceString[internalIndex];
|
|
78907
|
+
codonPositions.push(internalIndex);
|
|
78908
|
+
}
|
|
78909
|
+
}
|
|
78910
|
+
return { triplet, basesRead: internalIndex - index2, codonPositions };
|
|
78911
|
+
}
|
|
78912
|
+
__name(getNextTriplet, "getNextTriplet");
|
|
78913
|
+
function getTranslatedSequenceProperties(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
|
|
78914
78914
|
const originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
|
|
78915
78915
|
let sequenceString = originalSequenceString;
|
|
78916
|
-
|
|
78916
|
+
const translationRange = { start: 0, end: originalSequenceStringLength - 1 };
|
|
78917
78917
|
if (optionalSubrangeRange) {
|
|
78918
78918
|
sequenceString = getSequenceWithinRange(
|
|
78919
78919
|
optionalSubrangeRange,
|
|
78920
78920
|
originalSequenceString
|
|
78921
78921
|
);
|
|
78922
|
-
|
|
78922
|
+
translationRange.start = optionalSubrangeRange.start;
|
|
78923
|
+
translationRange.end = optionalSubrangeRange.end;
|
|
78923
78924
|
}
|
|
78924
78925
|
const sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
|
|
78925
|
-
|
|
78926
|
-
|
|
78927
|
-
|
|
78928
|
-
|
|
78929
|
-
|
|
78930
|
-
|
|
78931
|
-
|
|
78932
|
-
|
|
78933
|
-
{
|
|
78934
|
-
start: 0,
|
|
78935
|
-
end: revCompGapLength - 1
|
|
78936
|
-
},
|
|
78937
|
-
startOffset,
|
|
78926
|
+
if (!isProteinSequence && !forward) {
|
|
78927
|
+
sequenceString = getReverseComplementSequenceString(sequenceString);
|
|
78928
|
+
}
|
|
78929
|
+
const absoluteExonRange = !isProteinSequence && optionalSubrangeRange && optionalSubrangeRange.locations ? optionalSubrangeRange.locations : [translationRange];
|
|
78930
|
+
const exonRange = absoluteExonRange.map((range2) => {
|
|
78931
|
+
let outputRange = translateRange(
|
|
78932
|
+
range2,
|
|
78933
|
+
-translationRange.start,
|
|
78938
78934
|
originalSequenceStringLength
|
|
78939
78935
|
);
|
|
78940
|
-
if (
|
|
78941
|
-
|
|
78942
|
-
|
|
78943
|
-
|
|
78944
|
-
|
|
78945
|
-
|
|
78946
|
-
aminoAcidIndex,
|
|
78947
|
-
sequenceIndex: codonRange.start + i,
|
|
78948
|
-
codonRange,
|
|
78949
|
-
fullCodon: false
|
|
78950
|
-
});
|
|
78951
|
-
}
|
|
78952
|
-
aminoAcidIndex--;
|
|
78936
|
+
if (!forward) {
|
|
78937
|
+
outputRange = flipRelativeRange(
|
|
78938
|
+
outputRange,
|
|
78939
|
+
{ start: 0, end: sequenceStringLength - 1 },
|
|
78940
|
+
sequenceStringLength
|
|
78941
|
+
);
|
|
78953
78942
|
}
|
|
78943
|
+
return outputRange;
|
|
78944
|
+
});
|
|
78945
|
+
return {
|
|
78946
|
+
sequenceString,
|
|
78947
|
+
translationRange,
|
|
78948
|
+
sequenceStringLength,
|
|
78949
|
+
originalSequenceStringLength,
|
|
78950
|
+
exonRange
|
|
78951
|
+
};
|
|
78952
|
+
}
|
|
78953
|
+
__name(getTranslatedSequenceProperties, "getTranslatedSequenceProperties");
|
|
78954
|
+
function positionInCdsToPositionInMainSequence(index2, forward, translationRange, mainSequenceLength) {
|
|
78955
|
+
let outputRange = translateRange(
|
|
78956
|
+
{ start: index2, end: index2 },
|
|
78957
|
+
translationRange.start,
|
|
78958
|
+
mainSequenceLength
|
|
78959
|
+
);
|
|
78960
|
+
if (!forward) {
|
|
78961
|
+
outputRange = flipRelativeRange(
|
|
78962
|
+
outputRange,
|
|
78963
|
+
translationRange,
|
|
78964
|
+
mainSequenceLength
|
|
78965
|
+
);
|
|
78954
78966
|
}
|
|
78955
|
-
|
|
78967
|
+
return outputRange.start;
|
|
78968
|
+
}
|
|
78969
|
+
__name(positionInCdsToPositionInMainSequence, "positionInCdsToPositionInMainSequence");
|
|
78970
|
+
function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
|
|
78971
|
+
const {
|
|
78972
|
+
sequenceString,
|
|
78973
|
+
translationRange,
|
|
78974
|
+
sequenceStringLength,
|
|
78975
|
+
originalSequenceStringLength,
|
|
78976
|
+
exonRange
|
|
78977
|
+
} = getTranslatedSequenceProperties(
|
|
78978
|
+
originalSequenceString,
|
|
78979
|
+
forward,
|
|
78980
|
+
optionalSubrangeRange,
|
|
78981
|
+
isProteinSequence
|
|
78982
|
+
);
|
|
78983
|
+
const aminoAcidDataForEachBaseOfDNA = [];
|
|
78984
|
+
for (let index2 = 0; index2 < sequenceStringLength; index2 += 3) {
|
|
78956
78985
|
let aminoAcid;
|
|
78986
|
+
const aminoAcidIndex = index2 / 3;
|
|
78987
|
+
let codonPositionsInCDS;
|
|
78988
|
+
let basesRead;
|
|
78957
78989
|
if (isProteinSequence) {
|
|
78958
|
-
|
|
78990
|
+
codonPositionsInCDS = [0, 1, 2].map((i) => index2 + i);
|
|
78991
|
+
basesRead = 3;
|
|
78992
|
+
aminoAcid = proteinAlphabet[sequenceString[index2 / 3].toUpperCase()];
|
|
78959
78993
|
} else {
|
|
78960
|
-
|
|
78961
|
-
|
|
78962
|
-
|
|
78963
|
-
|
|
78964
|
-
|
|
78965
|
-
|
|
78966
|
-
|
|
78967
|
-
|
|
78968
|
-
|
|
78969
|
-
|
|
78970
|
-
|
|
78971
|
-
|
|
78972
|
-
|
|
78994
|
+
const {
|
|
78995
|
+
triplet,
|
|
78996
|
+
basesRead: _basesRead,
|
|
78997
|
+
codonPositions
|
|
78998
|
+
} = getNextTriplet(index2, sequenceString, exonRange);
|
|
78999
|
+
basesRead = _basesRead;
|
|
79000
|
+
codonPositionsInCDS = codonPositions;
|
|
79001
|
+
aminoAcid = triplet.length === 3 ? getAminoAcidFromSequenceTriplet(triplet) : getAminoAcidFromSequenceTriplet("xxx");
|
|
79002
|
+
}
|
|
79003
|
+
const absoluteCodonPositions = codonPositionsInCDS.map(
|
|
79004
|
+
(i) => positionInCdsToPositionInMainSequence(
|
|
79005
|
+
i,
|
|
79006
|
+
forward,
|
|
79007
|
+
translationRange,
|
|
79008
|
+
originalSequenceStringLength
|
|
79009
|
+
)
|
|
78973
79010
|
);
|
|
78974
|
-
|
|
78975
|
-
|
|
78976
|
-
|
|
78977
|
-
|
|
78978
|
-
|
|
78979
|
-
|
|
78980
|
-
|
|
78981
|
-
|
|
78982
|
-
|
|
78983
|
-
|
|
78984
|
-
|
|
78985
|
-
|
|
78986
|
-
|
|
78987
|
-
|
|
78988
|
-
|
|
78989
|
-
|
|
78990
|
-
|
|
78991
|
-
|
|
78992
|
-
|
|
78993
|
-
|
|
78994
|
-
|
|
78995
|
-
|
|
78996
|
-
|
|
78997
|
-
|
|
78998
|
-
|
|
78999
|
-
|
|
79000
|
-
|
|
79001
|
-
|
|
79002
|
-
|
|
79003
|
-
|
|
79004
|
-
|
|
79011
|
+
const codonRange = forward ? {
|
|
79012
|
+
start: absoluteCodonPositions[0],
|
|
79013
|
+
end: absoluteCodonPositions[codonPositionsInCDS.length - 1]
|
|
79014
|
+
} : {
|
|
79015
|
+
start: absoluteCodonPositions[codonPositionsInCDS.length - 1],
|
|
79016
|
+
end: absoluteCodonPositions[0]
|
|
79017
|
+
};
|
|
79018
|
+
let positionInCodon = 0;
|
|
79019
|
+
for (let i = 0; i < basesRead; i++) {
|
|
79020
|
+
const posInCds = i + index2;
|
|
79021
|
+
if (codonPositionsInCDS.includes(posInCds)) {
|
|
79022
|
+
aminoAcidDataForEachBaseOfDNA.push({
|
|
79023
|
+
aminoAcid,
|
|
79024
|
+
positionInCodon,
|
|
79025
|
+
aminoAcidIndex,
|
|
79026
|
+
sequenceIndex: absoluteCodonPositions[i],
|
|
79027
|
+
codonRange,
|
|
79028
|
+
fullCodon: codonPositionsInCDS.length === 3
|
|
79029
|
+
});
|
|
79030
|
+
positionInCodon++;
|
|
79031
|
+
} else {
|
|
79032
|
+
aminoAcidDataForEachBaseOfDNA.push({
|
|
79033
|
+
aminoAcid: null,
|
|
79034
|
+
positionInCodon: null,
|
|
79035
|
+
aminoAcidIndex: null,
|
|
79036
|
+
sequenceIndex: positionInCdsToPositionInMainSequence(
|
|
79037
|
+
posInCds,
|
|
79038
|
+
forward,
|
|
79039
|
+
translationRange,
|
|
79040
|
+
originalSequenceStringLength
|
|
79041
|
+
),
|
|
79042
|
+
codonRange: null,
|
|
79043
|
+
fullCodon: null
|
|
79044
|
+
});
|
|
79045
|
+
}
|
|
79005
79046
|
}
|
|
79006
|
-
|
|
79007
|
-
const lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
|
|
79008
|
-
codonRange = translateRange(
|
|
79009
|
-
{
|
|
79010
|
-
start: sequenceStringLength - lengthOfEndBpsNotCoveredByAminoAcids,
|
|
79011
|
-
end: sequenceStringLength - 1
|
|
79012
|
-
},
|
|
79013
|
-
startOffset,
|
|
79014
|
-
originalSequenceStringLength
|
|
79015
|
-
);
|
|
79016
|
-
for (let j = 0; j < lengthOfEndBpsNotCoveredByAminoAcids; j++) {
|
|
79017
|
-
aminoAcidDataForEachBaseOfDNA.push({
|
|
79018
|
-
aminoAcid: getAminoAcidFromSequenceTriplet("xxx"),
|
|
79019
|
-
//fake xxx triplet returns the gap amino acid
|
|
79020
|
-
positionInCodon: j,
|
|
79021
|
-
aminoAcidIndex,
|
|
79022
|
-
sequenceIndex: codonRange.start + j,
|
|
79023
|
-
fullCodon: false,
|
|
79024
|
-
codonRange
|
|
79025
|
-
});
|
|
79047
|
+
index2 += basesRead - codonPositionsInCDS.length;
|
|
79026
79048
|
}
|
|
79027
79049
|
if (sequenceStringLength !== aminoAcidDataForEachBaseOfDNA.length) {
|
|
79028
79050
|
throw new Error("something went wrong!");
|
|
79029
79051
|
}
|
|
79052
|
+
if (!forward) {
|
|
79053
|
+
aminoAcidDataForEachBaseOfDNA.reverse();
|
|
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|
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}
|
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|
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|
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|
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|
__name(getAminoAcidDataForEachBaseOfDna, "getAminoAcidDataForEachBaseOfDna");
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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}, __name(
|
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}, __name(_u, "OrderedObjParser"), _u);
|
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|
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|
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|
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|
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|
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|
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|
const OrderedObjParser = OrderedObjParser_1;
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
constructor(options) {
|
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|
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|
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|
|
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|
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|
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}, __name(
|
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}, __name(_v, "XMLParser"), _v);
|
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|
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|
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function toXml(jArray, options) {
|
|
@@ -118640,7 +118665,7 @@ function AASliver(props) {
|
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|
fill: color2 || "gray"
|
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|
}
|
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|
)),
|
|
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|
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!isFiller && /* @__PURE__ */ React__default$1.createElement(
|
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(!isFiller || isTruncatedEnd && isTruncatedStart) && /* @__PURE__ */ React__default$1.createElement(
|
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{
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|
fontSize: 25,
|
|
@@ -118717,18 +118742,39 @@ const _Translation = class _Translation extends React__default$1.Component {
|
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|
subrangeStartRelativeToAnnotationStart,
|
|
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|
aminoAcids
|
|
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|
);
|
|
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|
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let prevAaSliver;
|
|
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|
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let nextAaSliver = aminoAcidsForSubrange[1];
|
|
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|
+
const lastIndex = aminoAcidsForSubrange.length - 1;
|
|
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|
const translationSVG = aminoAcidsForSubrange.map(
|
|
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|
function(aminoAcidSliver, index2) {
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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if (aminoAcidSliver.positionInCodon === null) {
|
|
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|
+
prevAaSliver = aminoAcidSliver;
|
|
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|
+
nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
+
return /* @__PURE__ */ React__default$1.createElement(
|
|
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|
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"rect",
|
|
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{
|
|
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|
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x: index2 * charWidth2,
|
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|
+
y: height2 / 2 - height2 / 16,
|
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|
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width: charWidth2,
|
|
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|
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height: height2 / 8,
|
|
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fill: "grey",
|
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stroke: "black",
|
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strokeWidth: 1
|
|
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|
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}
|
|
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|
+
);
|
|
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|
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}
|
|
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|
+
const isEndFiller = (index2 === 0 || (prevAaSliver == null ? void 0 : prevAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === (annotation.forward ? 2 : 0);
|
|
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|
+
const isStartFiller = (index2 === lastIndex || (nextAaSliver == null ? void 0 : nextAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === (annotation.forward ? 0 : 2);
|
|
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|
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let isTruncatedEnd = (index2 === 0 || (prevAaSliver == null ? void 0 : prevAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === 1;
|
|
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|
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let isTruncatedStart = (index2 === lastIndex || (nextAaSliver == null ? void 0 : nextAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === 1;
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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const isStartFiller = index2 === aminoAcidsForSubrange.length - 1 && aminoAcidSliver.positionInCodon === (annotation.forward ? 0 : 2);
|
|
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|
if (aminoAcidSliver.positionInCodon !== 1 && !isStartFiller && !isEndFiller) {
|
|
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|
+
prevAaSliver = aminoAcidSliver;
|
|
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|
+
nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
return null;
|
|
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|
}
|
|
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|
const { gapsInside, gapsBefore } = getGaps2(aminoAcidSliver.codonRange);
|
|
@@ -118745,10 +118791,12 @@ const _Translation = class _Translation extends React__default$1.Component {
|
|
|
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|
} else {
|
|
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118792
|
color2 = aminoAcid.color;
|
|
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|
}
|
|
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|
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prevAaSliver = aminoAcidSliver;
|
|
118795
|
+
nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
return /* @__PURE__ */ React__default$1.createElement(
|
|
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|
AASliver$1,
|
|
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|
{
|
|
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|
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isFiller: isEndFiller || isStartFiller,
|
|
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|
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isFiller: isEndFiller || isStartFiller || isTruncatedEnd && isTruncatedStart,
|
|
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|
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|
|
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|
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|
|
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|
onClick: function(event) {
|
|
@@ -118979,7 +119027,7 @@ const Labels$2 = onlyUpdateForKeys([
|
|
|
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|
"editorName"
|
|
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|
])(Labels$1);
|
|
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|
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|
|
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|
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(
|
|
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|
+
(_w = class extends React__default$1.Component {
|
|
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|
render() {
|
|
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|
const {
|
|
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|
hovered,
|
|
@@ -119083,7 +119131,7 @@ const DrawLabel = withHover(
|
|
|
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|
}
|
|
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|
));
|
|
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|
}
|
|
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|
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}, __name(
|
|
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|
+
}, __name(_w, "DrawLabelInner"), _w)
|
|
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|
);
|
|
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|
const labelClassNames = {
|
|
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|
cutsites: "veCutsiteLabel",
|
|
@@ -120981,7 +121029,7 @@ function showFileDialog({ multiple = false, onSelect }) {
|
|
|
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|
}
|
|
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|
__name(showFileDialog, "showFileDialog");
|
|
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|
const name = "@teselagen/ove";
|
|
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|
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const version = "0.5.
|
|
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|
+
const version = "0.5.13";
|
|
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|
const main = "./src/index.js";
|
|
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|
const type = "module";
|
|
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|
const exports$1 = {
|
|
@@ -121061,8 +121109,8 @@ const useAnnotationLimits = /* @__PURE__ */ __name(() => useLocalStorageState("a
|
|
|
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|
cutsites: 100
|
|
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|
}
|
|
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|
}), "useAnnotationLimits");
|
|
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|
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function LimitAnnotations(
|
|
121065
|
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var
|
|
121112
|
+
function LimitAnnotations(_x) {
|
|
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|
+
var _y = _x, { type: type2 } = _y, rest = __objRest(_y, ["type"]);
|
|
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|
const [limits = {}, setLimits] = useAnnotationLimits();
|
|
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|
return /* @__PURE__ */ React__default$1.createElement(MenuItem, __spreadValues({ icon: "blank", shouldDismissPopover: false }, rest), [50, 100, 200, 400].map((n2) => /* @__PURE__ */ React__default$1.createElement(
|
|
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|
MenuItem,
|
|
@@ -127221,7 +127269,7 @@ const commonConfigResolver = {
|
|
|
127221
127269
|
};
|
|
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|
const DEFAULT_AXIS_THRESHOLD = 0;
|
|
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|
const coordinatesConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigResolver), {}, {
|
|
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|
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axis(
|
|
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|
+
axis(_v2, _k, {
|
|
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|
axis
|
|
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127274
|
}) {
|
|
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127275
|
this.lockDirection = axis === "lock";
|
|
@@ -127295,7 +127343,7 @@ const DEFAULT_DRAG_AXIS_THRESHOLD = {
|
|
|
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127343
|
pen: 8
|
|
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127344
|
};
|
|
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|
_objectSpread2$1(_objectSpread2$1({}, coordinatesConfigResolver), {}, {
|
|
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|
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device(
|
|
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|
+
device(_v2, _k, {
|
|
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|
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|
|
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|
touch = false,
|
|
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|
lock = false,
|
|
@@ -127321,7 +127369,7 @@ _objectSpread2$1(_objectSpread2$1({}, coordinatesConfigResolver), {}, {
|
|
|
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127369
|
return void 0;
|
|
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|
return value ? value : preventScroll !== void 0 ? "y" : void 0;
|
|
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127371
|
},
|
|
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|
-
pointerCapture(
|
|
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|
+
pointerCapture(_v2, _k, {
|
|
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|
pointer: {
|
|
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127374
|
capture = true,
|
|
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127375
|
buttons = 1,
|
|
@@ -127652,7 +127700,7 @@ const _PinchEngine = class _PinchEngine extends Engine {
|
|
|
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127700
|
__name(_PinchEngine, "PinchEngine");
|
|
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127701
|
let PinchEngine = _PinchEngine;
|
|
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127702
|
const pinchConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigResolver), {}, {
|
|
127655
|
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device(
|
|
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|
+
device(_v2, _k, {
|
|
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127704
|
shared: shared2,
|
|
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127705
|
pointer: {
|
|
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127706
|
touch = false
|
|
@@ -127670,7 +127718,7 @@ const pinchConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigRe
|
|
|
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127718
|
return "touch";
|
|
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127719
|
}
|
|
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127720
|
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|
|
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|
-
bounds(
|
|
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|
+
bounds(_v2, _k, {
|
|
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127722
|
scaleBounds = {},
|
|
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127723
|
angleBounds = {}
|
|
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127724
|
}) {
|
|
@@ -128969,7 +129017,7 @@ const _Minimap = class _Minimap extends React__default$1.Component {
|
|
|
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129017
|
__name(_Minimap, "Minimap");
|
|
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129018
|
let Minimap = _Minimap;
|
|
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129019
|
const YellowScrollHandle = view(
|
|
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|
-
(
|
|
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|
+
(_z = class extends React__default$1.Component {
|
|
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|
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|
|
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129022
|
const {
|
|
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129023
|
scrollHandleWidth,
|
|
@@ -129124,7 +129172,7 @@ const YellowScrollHandle = view(
|
|
|
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129172
|
)
|
|
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129173
|
);
|
|
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129174
|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_z, "YellowScrollHandleInner"), _z)
|
|
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129176
|
);
|
|
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129177
|
function getTrimmedRangesToDisplay({ trimmedRange, seqLen }) {
|
|
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129178
|
if (!trimmedRange)
|
|
@@ -129497,14 +129545,14 @@ function getRangeAnglesSpecial() {
|
|
|
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129545
|
}, rest);
|
|
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129546
|
}
|
|
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129547
|
__name(getRangeAnglesSpecial, "getRangeAnglesSpecial");
|
|
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|
-
function PositionAnnotationOnCircle(
|
|
129501
|
-
var
|
|
129548
|
+
function PositionAnnotationOnCircle(_A) {
|
|
129549
|
+
var _B = _A, {
|
|
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129550
|
children,
|
|
129503
129551
|
height: height2 = 0,
|
|
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129552
|
sAngle = 0,
|
|
129505
129553
|
eAngle = 0,
|
|
129506
129554
|
forward = true
|
|
129507
|
-
} =
|
|
129555
|
+
} = _B, rest = __objRest(_B, [
|
|
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129556
|
"children",
|
|
129509
129557
|
"height",
|
|
129510
129558
|
"sAngle",
|
|
@@ -134023,7 +134071,7 @@ const SelectDialog = compose$1(
|
|
|
134023
134071
|
}),
|
|
134024
134072
|
tgFormValues("from", "to")
|
|
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134073
|
)(
|
|
134026
|
-
(
|
|
134074
|
+
(_C = class extends React__default$1.Component {
|
|
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134075
|
constructor() {
|
|
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134076
|
super(...arguments);
|
|
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134077
|
__publicField(this, "updateTempHighlight", /* @__PURE__ */ __name(({ isStart, isEnd } = {}) => (val2) => {
|
|
@@ -134134,7 +134182,7 @@ const SelectDialog = compose$1(
|
|
|
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134182
|
))
|
|
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134183
|
);
|
|
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134184
|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_C, "SelectDialog"), _C)
|
|
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134186
|
);
|
|
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134187
|
const normalizeToInt = /* @__PURE__ */ __name((val2) => {
|
|
134140
134188
|
const int2 = Math.round(val2);
|
|
@@ -137589,8 +137637,8 @@ function getTrackFromEvent(event, allTracks) {
|
|
|
137589
137637
|
return track2;
|
|
137590
137638
|
}
|
|
137591
137639
|
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|
|
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|
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const PerformantSelectionLayer = view((
|
|
137593
|
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var
|
|
137640
|
+
const PerformantSelectionLayer = view((_D) => {
|
|
137641
|
+
var _E = _D, { easyStore: easyStore2 } = _E, rest = __objRest(_E, ["easyStore"]);
|
|
137594
137642
|
const seqLen = rest.sequenceLength - 1;
|
|
137595
137643
|
return /* @__PURE__ */ React__default$1.createElement(
|
|
137596
137644
|
SelectionLayer$3,
|
|
@@ -139430,8 +139478,8 @@ const AlignmentView$1 = compose(
|
|
|
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139478
|
})
|
|
139431
139479
|
)
|
|
139432
139480
|
)(AlignmentView);
|
|
139433
|
-
const PerformantCaret = view((
|
|
139434
|
-
var
|
|
139481
|
+
const PerformantCaret = view((_F) => {
|
|
139482
|
+
var _G = _F, { easyStore: easyStore2 } = _G, rest = __objRest(_G, ["easyStore"]);
|
|
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139483
|
return /* @__PURE__ */ React__default$1.createElement(Caret$2, __spreadValues({ caretPosition: easyStore2.caretPosition }, rest));
|
|
139436
139484
|
});
|
|
139437
139485
|
function cleanTracks(alignmentTracks) {
|
|
@@ -141696,14 +141744,14 @@ const cutsiteTool = connectToEditor(
|
|
|
141696
141744
|
}, toolbarItemProps))
|
|
141697
141745
|
);
|
|
141698
141746
|
});
|
|
141699
|
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function CutsiteToolDropDown(
|
|
141700
|
-
var
|
|
141747
|
+
function CutsiteToolDropDown(_H) {
|
|
141748
|
+
var _I = _H, {
|
|
141701
141749
|
editorName,
|
|
141702
141750
|
toggleDropdown,
|
|
141703
141751
|
annotationVisibilityShow: annotationVisibilityShow2,
|
|
141704
141752
|
withDigestTool,
|
|
141705
141753
|
createNewDigest: createNewDigest2
|
|
141706
|
-
} =
|
|
141754
|
+
} = _I, rest = __objRest(_I, [
|
|
141707
141755
|
"editorName",
|
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"toggleDropdown",
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"annotationVisibilityShow",
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@@ -141831,7 +141879,7 @@ const orfTool = connectToEditor(
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);
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141832
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});
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141833
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const OrfToolDropdown = withEditorProps(
|
|
141834
|
-
(
|
|
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+
(_J = class extends React__default$1.Component {
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constructor(props) {
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super(props);
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this.commands = getCommands(this);
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@@ -141857,7 +141905,7 @@ const OrfToolDropdown = withEditorProps(
|
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141857
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}
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));
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141859
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|
}
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|
141860
|
-
}, __name(
|
|
141908
|
+
}, __name(_J, "OrfDropdown"), _J)
|
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|
);
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|
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const opts = [
|
|
141863
141911
|
{ label: "DNA", value: "DNA" },
|
|
@@ -147256,8 +147304,8 @@ function StandaloneVersionHistoryView(props) {
|
|
|
147256
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|
return /* @__PURE__ */ React__default$1.createElement(Provider, { store }, /* @__PURE__ */ React__default$1.createElement(VersionHistoryView$1, __spreadValues({}, __spreadValues({}, props))));
|
|
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}
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|
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__name(StandaloneVersionHistoryView, "StandaloneVersionHistoryView");
|
|
147259
|
-
function createVectorEditor(_node,
|
|
147260
|
-
var
|
|
147307
|
+
function createVectorEditor(_node, _K = {}) {
|
|
147308
|
+
var _L = _K, { editorName = "StandaloneEditor" } = _L, rest = __objRest(_L, ["editorName"]);
|
|
147261
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|
if (!store) {
|
|
147262
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|
store = makeStore();
|
|
147263
147311
|
}
|
|
@@ -147290,8 +147338,8 @@ function createVectorEditor(_node, _I = {}) {
|
|
|
147290
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return editor;
|
|
147291
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|
}
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|
147292
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|
__name(createVectorEditor, "createVectorEditor");
|
|
147293
|
-
function createVersionHistoryView(node2,
|
|
147294
|
-
var
|
|
147341
|
+
function createVersionHistoryView(node2, _M = {}) {
|
|
147342
|
+
var _N = _M, { editorName = "StandaloneVersionHistoryView" } = _N, rest = __objRest(_N, ["editorName"]);
|
|
147295
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|
if (!store) {
|
|
147296
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|
store = makeStore();
|
|
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|
}
|