@teselagen/ove 0.5.12 → 0.5.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AlignmentTool/index.d.ts +4 -6
- package/index.cjs.js +399 -351
- package/index.es.js +399 -351
- package/index.umd.js +437 -363
- package/package.json +2 -2
- package/src/AlignmentTool/index.js +7 -11
- package/src/RowItem/Translations/AASliver.js +12 -11
- package/src/RowItem/Translations/Translation.js +41 -9
package/index.cjs.js
CHANGED
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@@ -56,7 +56,7 @@ var __async = (__this, __arguments, generator) => {
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step2((generator = generator.apply(__this, __arguments)).next());
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});
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};
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var
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var _s, _t, _u, _v, _w, _z, _C, _J;
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Object.defineProperty(exports, Symbol.toStringTag, { value: "Module" });
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const core$5 = require("@blueprintjs/core");
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const React$2 = require("react");
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@@ -14373,25 +14373,16 @@ var toString$5 = {}.toString;
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__name(require_iobject, "require_iobject");
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var $defineProperty$3 = require_objectDp();
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var hiddenKeys = _enumBugKeys.concat("length", "prototype");
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_objectGopn.f = Object.getOwnPropertyNames || /* @__PURE__ */ __name(function getOwnPropertyNames4(O2) {
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_objectGopnExt.f = /* @__PURE__ */ __name(function getOwnPropertyNames(it) {
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$defineProperty$2(OPSymbols, key, D2);
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var $getOwnPropertyNames = /* @__PURE__ */ __name(function getOwnPropertyNames2(it) {
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require_objectGopn().f = gOPNExt.f = $getOwnPropertyNames;
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toReturn = /* @__PURE__ */ React$2.createElement(core$5.Tooltip, __spreadProps(__spreadValues({}, toolTipOrPopoverProps), { target: IconInner }));
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const IconInner = /* @__PURE__ */ React$2.createElement(IconToUse, __spreadValues(__spreadValues({}, iconProps), rest));
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let toReturn;
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const toolTipOrPopoverProps = __spreadValues({
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disabled: disabled || !isPopover && window.Cypress && !window.Cypress.allowInfoHelperTooltips,
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popoverClassName: "tg-info-helper-popover bp3-tooltip",
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toReturn = /* @__PURE__ */ React$2.createElement(React$2.Fragment, null, IconInner, /* @__PURE__ */ React$2.createElement("span", { style: { paddingLeft: 5, fontStyle: "italic" } }, content2 || children));
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return /* @__PURE__ */ React$2.createElement(
|
|
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|
+
El,
|
|
36609
|
+
{
|
|
36610
|
+
style: __spreadValues(__spreadValues(__spreadValues({}, clickable ? { cursor: "pointer" } : {}), isInline ? {} : { display: "flex" }), style2),
|
|
36611
|
+
className: classNames(
|
|
36612
|
+
"info-helper-wrapper",
|
|
36613
|
+
{
|
|
36614
|
+
"info-helper-wrapper-noMarginTop": noMarginTop,
|
|
36615
|
+
"info-helper-clickable": isPopover
|
|
36616
|
+
},
|
|
36617
|
+
className
|
|
36618
|
+
)
|
|
36619
|
+
},
|
|
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|
+
toReturn
|
|
36621
|
+
);
|
|
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|
+
}, "InfoHelper");
|
|
36628
36623
|
const getIdOrCodeOrIndex = /* @__PURE__ */ __name((record, rowIndex) => {
|
|
36629
36624
|
if (record.id || record.id === 0) {
|
|
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36625
|
return record.id;
|
|
@@ -37298,16 +37293,25 @@ var getIntrinsic = /* @__PURE__ */ __name(function GetIntrinsic(name2, allowMiss
|
|
|
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37293
|
return value;
|
|
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37294
|
}, "GetIntrinsic");
|
|
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37295
|
var callBind$3 = { exports: {} };
|
|
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|
-
var
|
|
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|
-
var
|
|
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|
-
|
|
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|
-
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
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|
+
var esDefineProperty;
|
|
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|
+
var hasRequiredEsDefineProperty;
|
|
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|
+
function requireEsDefineProperty() {
|
|
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|
+
if (hasRequiredEsDefineProperty)
|
|
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|
+
return esDefineProperty;
|
|
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|
+
hasRequiredEsDefineProperty = 1;
|
|
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|
+
var GetIntrinsic3 = getIntrinsic;
|
|
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|
+
var $defineProperty2 = GetIntrinsic3("%Object.defineProperty%", true) || false;
|
|
37304
|
+
if ($defineProperty2) {
|
|
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|
+
try {
|
|
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|
+
$defineProperty2({}, "a", { value: 1 });
|
|
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|
+
} catch (e2) {
|
|
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|
+
$defineProperty2 = false;
|
|
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|
+
}
|
|
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37310
|
}
|
|
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|
+
esDefineProperty = $defineProperty2;
|
|
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|
+
return esDefineProperty;
|
|
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37313
|
}
|
|
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|
-
|
|
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|
+
__name(requireEsDefineProperty, "requireEsDefineProperty");
|
|
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|
var GetIntrinsic$3 = getIntrinsic;
|
|
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37316
|
var $gOPD$1 = GetIntrinsic$3("%Object.getOwnPropertyDescriptor%", true);
|
|
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37317
|
if ($gOPD$1) {
|
|
@@ -37318,7 +37322,7 @@ if ($gOPD$1) {
|
|
|
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37322
|
}
|
|
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37323
|
}
|
|
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37324
|
var gopd$1 = $gOPD$1;
|
|
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|
-
var $defineProperty$1 =
|
|
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|
+
var $defineProperty$1 = requireEsDefineProperty();
|
|
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37326
|
var $SyntaxError = syntax;
|
|
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37327
|
var $TypeError$4 = type$1;
|
|
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|
var gopd = gopd$1;
|
|
@@ -37359,7 +37363,7 @@ var defineDataProperty$1 = /* @__PURE__ */ __name(function defineDataProperty(ob
|
|
|
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|
throw new $SyntaxError("This environment does not support defining a property as non-configurable, non-writable, or non-enumerable.");
|
|
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|
}
|
|
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37365
|
}, "defineDataProperty");
|
|
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|
-
var $defineProperty =
|
|
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|
+
var $defineProperty = requireEsDefineProperty();
|
|
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|
var hasPropertyDescriptors = /* @__PURE__ */ __name(function hasPropertyDescriptors2() {
|
|
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|
return !!$defineProperty;
|
|
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|
}, "hasPropertyDescriptors");
|
|
@@ -37428,7 +37432,7 @@ var setFunctionLength = /* @__PURE__ */ __name(function setFunctionLength2(fn4,
|
|
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|
var $apply = GetIntrinsic3("%Function.prototype.apply%");
|
|
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37433
|
var $call = GetIntrinsic3("%Function.prototype.call%");
|
|
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37434
|
var $reflectApply = GetIntrinsic3("%Reflect.apply%", true) || bind3.call($call, $apply);
|
|
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|
-
var $defineProperty2 =
|
|
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|
+
var $defineProperty2 = requireEsDefineProperty();
|
|
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|
var $max = GetIntrinsic3("%Math.max%");
|
|
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|
module2.exports = /* @__PURE__ */ __name(function callBind2(originalFunction) {
|
|
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37438
|
if (typeof originalFunction !== "function") {
|
|
@@ -48414,8 +48418,8 @@ const renderReactSelect = /* @__PURE__ */ __name((props) => {
|
|
|
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48418
|
});
|
|
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48419
|
return /* @__PURE__ */ React$2.createElement(TgSelect$1, __spreadValues({}, propsToUse));
|
|
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|
}, "renderReactSelect");
|
|
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|
-
const BPSelect = /* @__PURE__ */ __name((
|
|
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|
-
var
|
|
48421
|
+
const BPSelect = /* @__PURE__ */ __name((_e) => {
|
|
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|
+
var _f = _e, { value, onChange } = _f, rest = __objRest(_f, ["value", "onChange"]);
|
|
48419
48423
|
return renderSelect(__spreadProps(__spreadValues({}, rest), { input: { onChange, value } }));
|
|
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48424
|
}, "BPSelect");
|
|
48421
48425
|
const renderSelect = /* @__PURE__ */ __name((props) => {
|
|
@@ -48550,12 +48554,12 @@ const renderBlueprintNumericInput = /* @__PURE__ */ __name((props) => {
|
|
|
48550
48554
|
})
|
|
48551
48555
|
);
|
|
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|
}, "renderBlueprintNumericInput");
|
|
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|
-
const renderBlueprintRadioGroup = /* @__PURE__ */ __name((
|
|
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|
-
var
|
|
48557
|
+
const renderBlueprintRadioGroup = /* @__PURE__ */ __name((_g) => {
|
|
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|
+
var _h = _g, {
|
|
48555
48559
|
input,
|
|
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48560
|
options,
|
|
48557
48561
|
onFieldSubmit
|
|
48558
|
-
} =
|
|
48562
|
+
} = _h, rest = __objRest(_h, [
|
|
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48563
|
"input",
|
|
48560
48564
|
"options",
|
|
48561
48565
|
"onFieldSubmit"
|
|
@@ -49895,7 +49899,7 @@ var KNOWN_STATICS = {
|
|
|
49895
49899
|
arity: true
|
|
49896
49900
|
};
|
|
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49901
|
var defineProperty$3 = Object.defineProperty;
|
|
49898
|
-
var
|
|
49902
|
+
var getOwnPropertyNames3 = Object.getOwnPropertyNames;
|
|
49899
49903
|
var getOwnPropertySymbols3 = Object.getOwnPropertySymbols;
|
|
49900
49904
|
var getOwnPropertyDescriptor3 = Object.getOwnPropertyDescriptor;
|
|
49901
49905
|
var getPrototypeOf = Object.getPrototypeOf;
|
|
@@ -49908,7 +49912,7 @@ function hoistNonReactStatics(targetComponent, sourceComponent, blacklist) {
|
|
|
49908
49912
|
hoistNonReactStatics(targetComponent, inheritedComponent, blacklist);
|
|
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49913
|
}
|
|
49910
49914
|
}
|
|
49911
|
-
var keys5 =
|
|
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|
+
var keys5 = getOwnPropertyNames3(sourceComponent);
|
|
49912
49916
|
if (getOwnPropertySymbols3) {
|
|
49913
49917
|
keys5 = keys5.concat(getOwnPropertySymbols3(sourceComponent));
|
|
49914
49918
|
}
|
|
@@ -51799,8 +51803,8 @@ const _DataTable = class _DataTable extends React$2.Component {
|
|
|
51799
51803
|
};
|
|
51800
51804
|
}),
|
|
51801
51805
|
branch(({ immovable }) => "true" !== immovable, sortableElement)
|
|
51802
|
-
)((
|
|
51803
|
-
var
|
|
51806
|
+
)((_i) => {
|
|
51807
|
+
var _j = _i, { toggleSort, className, children } = _j, rest = __objRest(_j, ["toggleSort", "className", "children"]);
|
|
51804
51808
|
return /* @__PURE__ */ React$2.createElement(
|
|
51805
51809
|
"div",
|
|
51806
51810
|
__spreadValues({
|
|
@@ -54059,13 +54063,13 @@ function getCellInfo({
|
|
|
54059
54063
|
};
|
|
54060
54064
|
}
|
|
54061
54065
|
__name(getCellInfo, "getCellInfo");
|
|
54062
|
-
function ColumnFilterMenu(
|
|
54063
|
-
var
|
|
54066
|
+
function ColumnFilterMenu(_k) {
|
|
54067
|
+
var _l = _k, {
|
|
54064
54068
|
FilterMenu,
|
|
54065
54069
|
filterActiveForColumn,
|
|
54066
54070
|
compact: compact3,
|
|
54067
54071
|
extraCompact
|
|
54068
|
-
} =
|
|
54072
|
+
} = _l, rest = __objRest(_l, [
|
|
54069
54073
|
"FilterMenu",
|
|
54070
54074
|
"filterActiveForColumn",
|
|
54071
54075
|
"compact",
|
|
@@ -56922,8 +56926,8 @@ function maybeStripIdFromEntities(ents, validateAgainstSchema) {
|
|
|
56922
56926
|
return toRet == null ? void 0 : toRet.map((e2) => omit$3(e2, ["_isClean"]));
|
|
56923
56927
|
}
|
|
56924
56928
|
__name(maybeStripIdFromEntities, "maybeStripIdFromEntities");
|
|
56925
|
-
const useDialog = /* @__PURE__ */ __name((
|
|
56926
|
-
var
|
|
56929
|
+
const useDialog = /* @__PURE__ */ __name((_m) => {
|
|
56930
|
+
var _n = _m, { ModalComponent } = _n, rest = __objRest(_n, ["ModalComponent"]);
|
|
56927
56931
|
const [isOpen, setOpen] = React$2.useState(false);
|
|
56928
56932
|
const [additionalProps, setAdditionalProps] = React$2.useState(false);
|
|
56929
56933
|
const comp = /* @__PURE__ */ React$2.createElement(
|
|
@@ -67452,68 +67456,55 @@ function BounceLoader({ style: style2, className }) {
|
|
|
67452
67456
|
);
|
|
67453
67457
|
}
|
|
67454
67458
|
__name(BounceLoader, "BounceLoader");
|
|
67455
|
-
const
|
|
67456
|
-
|
|
67457
|
-
|
|
67458
|
-
|
|
67459
|
-
|
|
67460
|
-
|
|
67461
|
-
|
|
67462
|
-
|
|
67463
|
-
|
|
67464
|
-
|
|
67465
|
-
|
|
67466
|
-
|
|
67459
|
+
const Loading = /* @__PURE__ */ __name(({
|
|
67460
|
+
loading,
|
|
67461
|
+
style: userStyle,
|
|
67462
|
+
className,
|
|
67463
|
+
containerStyle = {},
|
|
67464
|
+
children,
|
|
67465
|
+
displayInstantly = false,
|
|
67466
|
+
bounce = false,
|
|
67467
|
+
withTimeout,
|
|
67468
|
+
inDialog,
|
|
67469
|
+
centeredInPage
|
|
67470
|
+
}) => {
|
|
67471
|
+
const [longerThan200MS, setLongerThan200MS] = React$2.useState(false);
|
|
67472
|
+
React$2.useEffect(() => {
|
|
67473
|
+
const timeoutId = setTimeout(() => {
|
|
67474
|
+
setLongerThan200MS(true);
|
|
67467
67475
|
}, 200);
|
|
67468
|
-
|
|
67469
|
-
|
|
67470
|
-
|
|
67471
|
-
}
|
|
67472
|
-
|
|
67473
|
-
|
|
67474
|
-
|
|
67475
|
-
|
|
67476
|
-
|
|
67477
|
-
containerStyle = {},
|
|
67478
|
-
children,
|
|
67479
|
-
displayInstantly = false,
|
|
67480
|
-
bounce = false,
|
|
67481
|
-
withTimeout,
|
|
67482
|
-
inDialog,
|
|
67483
|
-
centeredInPage
|
|
67484
|
-
} = this.props;
|
|
67485
|
-
const { longerThan200MS } = this.state;
|
|
67486
|
-
const style2 = __spreadValues(__spreadValues({}, userStyle), inDialog && { minHeight: 120 });
|
|
67487
|
-
const LoaderComp = bounce || inDialog ? BounceLoader : DNALoader;
|
|
67488
|
-
if (loading || !children) {
|
|
67489
|
-
if (!displayInstantly && !longerThan200MS && (!bounce && !inDialog || withTimeout)) {
|
|
67490
|
-
return /* @__PURE__ */ React$2.createElement("div", null);
|
|
67491
|
-
}
|
|
67492
|
-
return /* @__PURE__ */ React$2.createElement(
|
|
67493
|
-
"div",
|
|
67494
|
-
{
|
|
67495
|
-
className: "tg-loader-container tg-flex justify-center align-center",
|
|
67496
|
-
style: __spreadValues(__spreadValues({
|
|
67497
|
-
width: "100%"
|
|
67498
|
-
}, containerStyle), centeredInPage && {
|
|
67499
|
-
width: void 0,
|
|
67500
|
-
zIndex: 20,
|
|
67501
|
-
height: 10,
|
|
67502
|
-
position: "fixed",
|
|
67503
|
-
top: "50%",
|
|
67504
|
-
left: "50%",
|
|
67505
|
-
transform: "translate(-50%, 0)"
|
|
67506
|
-
})
|
|
67507
|
-
},
|
|
67508
|
-
/* @__PURE__ */ React$2.createElement(LoaderComp, { style: style2, className })
|
|
67509
|
-
);
|
|
67510
|
-
} else {
|
|
67511
|
-
return children || null;
|
|
67476
|
+
return () => {
|
|
67477
|
+
clearTimeout(timeoutId);
|
|
67478
|
+
};
|
|
67479
|
+
}, []);
|
|
67480
|
+
const style2 = __spreadValues(__spreadValues({}, userStyle), inDialog && { minHeight: 120 });
|
|
67481
|
+
const LoaderComp = bounce || inDialog ? BounceLoader : DNALoader;
|
|
67482
|
+
if (loading || !children) {
|
|
67483
|
+
if (!displayInstantly && !longerThan200MS && (!bounce && !inDialog || withTimeout)) {
|
|
67484
|
+
return /* @__PURE__ */ React$2.createElement("div", null);
|
|
67512
67485
|
}
|
|
67486
|
+
return /* @__PURE__ */ React$2.createElement(
|
|
67487
|
+
"div",
|
|
67488
|
+
{
|
|
67489
|
+
className: "tg-loader-container tg-flex justify-center align-center",
|
|
67490
|
+
style: __spreadValues(__spreadValues({
|
|
67491
|
+
width: "100%"
|
|
67492
|
+
}, containerStyle), centeredInPage && {
|
|
67493
|
+
width: void 0,
|
|
67494
|
+
zIndex: 20,
|
|
67495
|
+
height: 10,
|
|
67496
|
+
position: "fixed",
|
|
67497
|
+
top: "50%",
|
|
67498
|
+
left: "50%",
|
|
67499
|
+
transform: "translate(-50%, 0)"
|
|
67500
|
+
})
|
|
67501
|
+
},
|
|
67502
|
+
/* @__PURE__ */ React$2.createElement(LoaderComp, { style: style2, className })
|
|
67503
|
+
);
|
|
67504
|
+
} else {
|
|
67505
|
+
return children || null;
|
|
67513
67506
|
}
|
|
67514
|
-
};
|
|
67515
|
-
__name(_Loading, "Loading");
|
|
67516
|
-
let Loading = _Loading;
|
|
67507
|
+
}, "Loading");
|
|
67517
67508
|
function AdvancedOptions({
|
|
67518
67509
|
children,
|
|
67519
67510
|
content: content2,
|
|
@@ -67546,14 +67537,14 @@ function AdvancedOptions({
|
|
|
67546
67537
|
), isOpen && /* @__PURE__ */ React$2.createElement("div", { style: { marginTop: 10 } }, content2 || children));
|
|
67547
67538
|
}
|
|
67548
67539
|
__name(AdvancedOptions, "AdvancedOptions");
|
|
67549
|
-
function DropdownButton(
|
|
67550
|
-
var
|
|
67540
|
+
function DropdownButton(_o) {
|
|
67541
|
+
var _p = _o, {
|
|
67551
67542
|
disabled,
|
|
67552
67543
|
menu,
|
|
67553
67544
|
noRightIcon,
|
|
67554
67545
|
popoverProps,
|
|
67555
67546
|
className
|
|
67556
|
-
} =
|
|
67547
|
+
} = _p, rest = __objRest(_p, [
|
|
67557
67548
|
"disabled",
|
|
67558
67549
|
"menu",
|
|
67559
67550
|
"noRightIcon",
|
|
@@ -70912,14 +70903,14 @@ const EnhancedMenuItem = compose(
|
|
|
70912
70903
|
}
|
|
70913
70904
|
}),
|
|
70914
70905
|
branch(({ navTo }) => navTo, withRouter$1)
|
|
70915
|
-
)(function(
|
|
70916
|
-
var
|
|
70906
|
+
)(function(_q) {
|
|
70907
|
+
var _r = _q, {
|
|
70917
70908
|
navTo,
|
|
70918
70909
|
context,
|
|
70919
70910
|
staticContext,
|
|
70920
70911
|
didMount,
|
|
70921
70912
|
willUnmount
|
|
70922
|
-
} =
|
|
70913
|
+
} = _r, props = __objRest(_r, [
|
|
70923
70914
|
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|
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|
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|
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|
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@@ -71113,7 +71104,7 @@ function doesSearchValMatchText(searchVal, justText) {
|
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71104
|
);
|
|
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|
}
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|
__name(doesSearchValMatchText, "doesSearchValMatchText");
|
|
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|
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let MenuBar$1 = (
|
|
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|
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let MenuBar$1 = (_s = class extends React$2.Component {
|
|
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|
constructor(props) {
|
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|
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|
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|
__publicField(this, "state", {
|
|
@@ -71358,10 +71349,10 @@ let MenuBar$1 = (_q = class extends React$2.Component {
|
|
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|
);
|
|
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|
}), extraContent);
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|
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|
}
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|
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}, __name(
|
|
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|
+
}, __name(_s, "MenuBar"), __publicField(_s, "defaultProps", {
|
|
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|
className: "",
|
|
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|
style: {}
|
|
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|
-
}),
|
|
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|
+
}), _s);
|
|
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|
const isDivider = /* @__PURE__ */ __name((item) => item.divider !== void 0, "isDivider");
|
|
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71357
|
function getAllMenuTextsAndHandlers(menu, enhancers, context, path2 = []) {
|
|
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|
if (!menu)
|
|
@@ -71509,7 +71500,7 @@ function HotkeysDialog(props) {
|
|
|
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71500
|
);
|
|
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71501
|
}
|
|
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71502
|
__name(HotkeysDialog, "HotkeysDialog");
|
|
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|
-
let FillWindow$1 = (
|
|
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|
+
let FillWindow$1 = (_t = class extends React$2.Component {
|
|
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71504
|
constructor(props) {
|
|
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71505
|
super(props);
|
|
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|
rerenderOnWindowResize(this);
|
|
@@ -71557,7 +71548,7 @@ let FillWindow$1 = (_r = class extends React$2.Component {
|
|
|
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71548
|
return ReactDOM$1.createPortal(inner2, window.document.body);
|
|
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|
return inner2;
|
|
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|
}
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|
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}, __name(
|
|
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+
}, __name(_t, "FillWindow"), _t);
|
|
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|
var relativeTime$1 = { exports: {} };
|
|
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71553
|
(function(module2, exports2) {
|
|
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71554
|
!function(r2, e2) {
|
|
@@ -71605,16 +71596,6 @@ var relativeTime$1 = { exports: {} };
|
|
|
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71596
|
var relativeTimeExports = relativeTime$1.exports;
|
|
71606
71597
|
const relativeTime = /* @__PURE__ */ getDefaultExportFromCjs(relativeTimeExports);
|
|
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71598
|
dayjs.extend(relativeTime);
|
|
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|
-
const _Timeline = class _Timeline extends React$2.Component {
|
|
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|
-
render() {
|
|
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|
-
return /* @__PURE__ */ React$2.createElement("div", { className: "tg-timeline" }, this.props.children.length > 1 && /* @__PURE__ */ React$2.createElement("div", { className: "tg-timeline-line" }), this.props.children);
|
|
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|
-
}
|
|
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|
-
};
|
|
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|
-
__name(_Timeline, "Timeline");
|
|
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|
-
__publicField(_Timeline, "propTypes", {
|
|
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|
-
children: PropTypes.arrayOf(PropTypes.element)
|
|
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|
-
});
|
|
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|
-
let Timeline = _Timeline;
|
|
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71599
|
const ptIconWrapper = /* @__PURE__ */ __name((path2, viewboxDefault = 24, rest) => {
|
|
71619
71600
|
return /* @__PURE__ */ React$2.createElement("span", { className: "bp3-icon" }, /* @__PURE__ */ React$2.createElement(
|
|
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71601
|
"svg",
|
|
@@ -78928,123 +78909,167 @@ function getAminoAcidFromSequenceTriplet(sequenceString) {
|
|
|
78928
78909
|
return proteinAlphabet[letter.toUpperCase()];
|
|
78929
78910
|
}
|
|
78930
78911
|
__name(getAminoAcidFromSequenceTriplet, "getAminoAcidFromSequenceTriplet");
|
|
78931
|
-
function
|
|
78912
|
+
function getNextTriplet(index2, sequenceString, exonRange) {
|
|
78913
|
+
let triplet = "";
|
|
78914
|
+
let internalIndex;
|
|
78915
|
+
const codonPositions = [];
|
|
78916
|
+
const isBaseInExon = /* @__PURE__ */ __name((baseIndex) => exonRange.some(
|
|
78917
|
+
(r2) => isPositionWithinRange(baseIndex, r2, sequenceString.length, true, false)
|
|
78918
|
+
), "isBaseInExon");
|
|
78919
|
+
for (internalIndex = index2; internalIndex < sequenceString.length; internalIndex++) {
|
|
78920
|
+
if (triplet.length === 3) {
|
|
78921
|
+
break;
|
|
78922
|
+
}
|
|
78923
|
+
if (isBaseInExon(internalIndex)) {
|
|
78924
|
+
triplet += sequenceString[internalIndex];
|
|
78925
|
+
codonPositions.push(internalIndex);
|
|
78926
|
+
}
|
|
78927
|
+
}
|
|
78928
|
+
return { triplet, basesRead: internalIndex - index2, codonPositions };
|
|
78929
|
+
}
|
|
78930
|
+
__name(getNextTriplet, "getNextTriplet");
|
|
78931
|
+
function getTranslatedSequenceProperties(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
|
|
78932
78932
|
const originalSequenceStringLength = isProteinSequence ? originalSequenceString.length * 3 : originalSequenceString.length;
|
|
78933
78933
|
let sequenceString = originalSequenceString;
|
|
78934
|
-
|
|
78934
|
+
const translationRange = { start: 0, end: originalSequenceStringLength - 1 };
|
|
78935
78935
|
if (optionalSubrangeRange) {
|
|
78936
78936
|
sequenceString = getSequenceWithinRange(
|
|
78937
78937
|
optionalSubrangeRange,
|
|
78938
78938
|
originalSequenceString
|
|
78939
78939
|
);
|
|
78940
|
-
|
|
78940
|
+
translationRange.start = optionalSubrangeRange.start;
|
|
78941
|
+
translationRange.end = optionalSubrangeRange.end;
|
|
78941
78942
|
}
|
|
78942
78943
|
const sequenceStringLength = isProteinSequence ? sequenceString.length * 3 : sequenceString.length;
|
|
78943
|
-
|
|
78944
|
-
|
|
78945
|
-
|
|
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|
-
|
|
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|
-
|
|
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|
-
|
|
78949
|
-
|
|
78950
|
-
|
|
78951
|
-
{
|
|
78952
|
-
start: 0,
|
|
78953
|
-
end: revCompGapLength - 1
|
|
78954
|
-
},
|
|
78955
|
-
startOffset,
|
|
78944
|
+
if (!isProteinSequence && !forward) {
|
|
78945
|
+
sequenceString = getReverseComplementSequenceString(sequenceString);
|
|
78946
|
+
}
|
|
78947
|
+
const absoluteExonRange = !isProteinSequence && optionalSubrangeRange && optionalSubrangeRange.locations ? optionalSubrangeRange.locations : [translationRange];
|
|
78948
|
+
const exonRange = absoluteExonRange.map((range2) => {
|
|
78949
|
+
let outputRange = translateRange(
|
|
78950
|
+
range2,
|
|
78951
|
+
-translationRange.start,
|
|
78956
78952
|
originalSequenceStringLength
|
|
78957
78953
|
);
|
|
78958
|
-
if (
|
|
78959
|
-
|
|
78960
|
-
|
|
78961
|
-
|
|
78962
|
-
|
|
78963
|
-
|
|
78964
|
-
aminoAcidIndex,
|
|
78965
|
-
sequenceIndex: codonRange.start + i,
|
|
78966
|
-
codonRange,
|
|
78967
|
-
fullCodon: false
|
|
78968
|
-
});
|
|
78969
|
-
}
|
|
78970
|
-
aminoAcidIndex--;
|
|
78954
|
+
if (!forward) {
|
|
78955
|
+
outputRange = flipRelativeRange(
|
|
78956
|
+
outputRange,
|
|
78957
|
+
{ start: 0, end: sequenceStringLength - 1 },
|
|
78958
|
+
sequenceStringLength
|
|
78959
|
+
);
|
|
78971
78960
|
}
|
|
78961
|
+
return outputRange;
|
|
78962
|
+
});
|
|
78963
|
+
return {
|
|
78964
|
+
sequenceString,
|
|
78965
|
+
translationRange,
|
|
78966
|
+
sequenceStringLength,
|
|
78967
|
+
originalSequenceStringLength,
|
|
78968
|
+
exonRange
|
|
78969
|
+
};
|
|
78970
|
+
}
|
|
78971
|
+
__name(getTranslatedSequenceProperties, "getTranslatedSequenceProperties");
|
|
78972
|
+
function positionInCdsToPositionInMainSequence(index2, forward, translationRange, mainSequenceLength) {
|
|
78973
|
+
let outputRange = translateRange(
|
|
78974
|
+
{ start: index2, end: index2 },
|
|
78975
|
+
translationRange.start,
|
|
78976
|
+
mainSequenceLength
|
|
78977
|
+
);
|
|
78978
|
+
if (!forward) {
|
|
78979
|
+
outputRange = flipRelativeRange(
|
|
78980
|
+
outputRange,
|
|
78981
|
+
translationRange,
|
|
78982
|
+
mainSequenceLength
|
|
78983
|
+
);
|
|
78972
78984
|
}
|
|
78973
|
-
|
|
78985
|
+
return outputRange.start;
|
|
78986
|
+
}
|
|
78987
|
+
__name(positionInCdsToPositionInMainSequence, "positionInCdsToPositionInMainSequence");
|
|
78988
|
+
function getAminoAcidDataForEachBaseOfDna(originalSequenceString, forward, optionalSubrangeRange, isProteinSequence) {
|
|
78989
|
+
const {
|
|
78990
|
+
sequenceString,
|
|
78991
|
+
translationRange,
|
|
78992
|
+
sequenceStringLength,
|
|
78993
|
+
originalSequenceStringLength,
|
|
78994
|
+
exonRange
|
|
78995
|
+
} = getTranslatedSequenceProperties(
|
|
78996
|
+
originalSequenceString,
|
|
78997
|
+
forward,
|
|
78998
|
+
optionalSubrangeRange,
|
|
78999
|
+
isProteinSequence
|
|
79000
|
+
);
|
|
79001
|
+
const aminoAcidDataForEachBaseOfDNA = [];
|
|
79002
|
+
for (let index2 = 0; index2 < sequenceStringLength; index2 += 3) {
|
|
78974
79003
|
let aminoAcid;
|
|
79004
|
+
const aminoAcidIndex = index2 / 3;
|
|
79005
|
+
let codonPositionsInCDS;
|
|
79006
|
+
let basesRead;
|
|
78975
79007
|
if (isProteinSequence) {
|
|
78976
|
-
|
|
79008
|
+
codonPositionsInCDS = [0, 1, 2].map((i) => index2 + i);
|
|
79009
|
+
basesRead = 3;
|
|
79010
|
+
aminoAcid = proteinAlphabet[sequenceString[index2 / 3].toUpperCase()];
|
|
78977
79011
|
} else {
|
|
78978
|
-
|
|
78979
|
-
|
|
78980
|
-
|
|
78981
|
-
|
|
78982
|
-
|
|
78983
|
-
|
|
78984
|
-
|
|
78985
|
-
|
|
78986
|
-
|
|
78987
|
-
|
|
78988
|
-
|
|
78989
|
-
|
|
78990
|
-
|
|
79012
|
+
const {
|
|
79013
|
+
triplet,
|
|
79014
|
+
basesRead: _basesRead,
|
|
79015
|
+
codonPositions
|
|
79016
|
+
} = getNextTriplet(index2, sequenceString, exonRange);
|
|
79017
|
+
basesRead = _basesRead;
|
|
79018
|
+
codonPositionsInCDS = codonPositions;
|
|
79019
|
+
aminoAcid = triplet.length === 3 ? getAminoAcidFromSequenceTriplet(triplet) : getAminoAcidFromSequenceTriplet("xxx");
|
|
79020
|
+
}
|
|
79021
|
+
const absoluteCodonPositions = codonPositionsInCDS.map(
|
|
79022
|
+
(i) => positionInCdsToPositionInMainSequence(
|
|
79023
|
+
i,
|
|
79024
|
+
forward,
|
|
79025
|
+
translationRange,
|
|
79026
|
+
originalSequenceStringLength
|
|
79027
|
+
)
|
|
78991
79028
|
);
|
|
78992
|
-
|
|
78993
|
-
|
|
78994
|
-
|
|
78995
|
-
|
|
78996
|
-
|
|
78997
|
-
|
|
78998
|
-
|
|
78999
|
-
|
|
79000
|
-
|
|
79001
|
-
|
|
79002
|
-
|
|
79003
|
-
|
|
79004
|
-
|
|
79005
|
-
|
|
79006
|
-
|
|
79007
|
-
|
|
79008
|
-
|
|
79009
|
-
|
|
79010
|
-
|
|
79011
|
-
|
|
79012
|
-
|
|
79013
|
-
|
|
79014
|
-
|
|
79015
|
-
|
|
79016
|
-
|
|
79017
|
-
|
|
79018
|
-
|
|
79019
|
-
|
|
79020
|
-
|
|
79021
|
-
|
|
79022
|
-
|
|
79029
|
+
const codonRange = forward ? {
|
|
79030
|
+
start: absoluteCodonPositions[0],
|
|
79031
|
+
end: absoluteCodonPositions[codonPositionsInCDS.length - 1]
|
|
79032
|
+
} : {
|
|
79033
|
+
start: absoluteCodonPositions[codonPositionsInCDS.length - 1],
|
|
79034
|
+
end: absoluteCodonPositions[0]
|
|
79035
|
+
};
|
|
79036
|
+
let positionInCodon = 0;
|
|
79037
|
+
for (let i = 0; i < basesRead; i++) {
|
|
79038
|
+
const posInCds = i + index2;
|
|
79039
|
+
if (codonPositionsInCDS.includes(posInCds)) {
|
|
79040
|
+
aminoAcidDataForEachBaseOfDNA.push({
|
|
79041
|
+
aminoAcid,
|
|
79042
|
+
positionInCodon,
|
|
79043
|
+
aminoAcidIndex,
|
|
79044
|
+
sequenceIndex: absoluteCodonPositions[i],
|
|
79045
|
+
codonRange,
|
|
79046
|
+
fullCodon: codonPositionsInCDS.length === 3
|
|
79047
|
+
});
|
|
79048
|
+
positionInCodon++;
|
|
79049
|
+
} else {
|
|
79050
|
+
aminoAcidDataForEachBaseOfDNA.push({
|
|
79051
|
+
aminoAcid: null,
|
|
79052
|
+
positionInCodon: null,
|
|
79053
|
+
aminoAcidIndex: null,
|
|
79054
|
+
sequenceIndex: positionInCdsToPositionInMainSequence(
|
|
79055
|
+
posInCds,
|
|
79056
|
+
forward,
|
|
79057
|
+
translationRange,
|
|
79058
|
+
originalSequenceStringLength
|
|
79059
|
+
),
|
|
79060
|
+
codonRange: null,
|
|
79061
|
+
fullCodon: null
|
|
79062
|
+
});
|
|
79063
|
+
}
|
|
79023
79064
|
}
|
|
79024
|
-
|
|
79025
|
-
const lengthOfEndBpsNotCoveredByAminoAcids = sequenceStringLength - aminoAcidDataForEachBaseOfDNA.length;
|
|
79026
|
-
codonRange = translateRange(
|
|
79027
|
-
{
|
|
79028
|
-
start: sequenceStringLength - lengthOfEndBpsNotCoveredByAminoAcids,
|
|
79029
|
-
end: sequenceStringLength - 1
|
|
79030
|
-
},
|
|
79031
|
-
startOffset,
|
|
79032
|
-
originalSequenceStringLength
|
|
79033
|
-
);
|
|
79034
|
-
for (let j = 0; j < lengthOfEndBpsNotCoveredByAminoAcids; j++) {
|
|
79035
|
-
aminoAcidDataForEachBaseOfDNA.push({
|
|
79036
|
-
aminoAcid: getAminoAcidFromSequenceTriplet("xxx"),
|
|
79037
|
-
//fake xxx triplet returns the gap amino acid
|
|
79038
|
-
positionInCodon: j,
|
|
79039
|
-
aminoAcidIndex,
|
|
79040
|
-
sequenceIndex: codonRange.start + j,
|
|
79041
|
-
fullCodon: false,
|
|
79042
|
-
codonRange
|
|
79043
|
-
});
|
|
79065
|
+
index2 += basesRead - codonPositionsInCDS.length;
|
|
79044
79066
|
}
|
|
79045
79067
|
if (sequenceStringLength !== aminoAcidDataForEachBaseOfDNA.length) {
|
|
79046
79068
|
throw new Error("something went wrong!");
|
|
79047
79069
|
}
|
|
79070
|
+
if (!forward) {
|
|
79071
|
+
aminoAcidDataForEachBaseOfDNA.reverse();
|
|
79072
|
+
}
|
|
79048
79073
|
return aminoAcidDataForEachBaseOfDNA;
|
|
79049
79074
|
}
|
|
79050
79075
|
__name(getAminoAcidDataForEachBaseOfDna, "getAminoAcidDataForEachBaseOfDna");
|
|
@@ -90444,7 +90469,7 @@ const util$1 = util$4;
|
|
|
90444
90469
|
const xmlNode = xmlNode$1;
|
|
90445
90470
|
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let OrderedObjParser$1 = (
|
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let OrderedObjParser$1 = (_u = class {
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|
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|
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|
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}, __name(
|
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}, __name(_u, "OrderedObjParser"), _u);
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|
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|
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|
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|
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|
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let XMLParser$1 = (
|
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|
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let XMLParser$1 = (_v = class {
|
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|
constructor(options) {
|
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|
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|
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|
|
@@ -91089,7 +91114,7 @@ let XMLParser$1 = (_t = class {
|
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|
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}, __name(
|
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}, __name(_v, "XMLParser"), _v);
|
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|
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|
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|
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function toXml(jArray, options) {
|
|
@@ -118658,7 +118683,7 @@ function AASliver(props) {
|
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|
fill: color2 || "gray"
|
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|
}
|
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|
)),
|
|
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|
-
!isFiller && /* @__PURE__ */ React$2.createElement(
|
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|
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(!isFiller || isTruncatedEnd && isTruncatedStart) && /* @__PURE__ */ React$2.createElement(
|
|
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|
"text",
|
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{
|
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|
fontSize: 25,
|
|
@@ -118735,18 +118760,39 @@ const _Translation = class _Translation extends React$2.Component {
|
|
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118760
|
subrangeStartRelativeToAnnotationStart,
|
|
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118761
|
aminoAcids
|
|
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|
);
|
|
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|
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let prevAaSliver;
|
|
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|
+
let nextAaSliver = aminoAcidsForSubrange[1];
|
|
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|
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const lastIndex = aminoAcidsForSubrange.length - 1;
|
|
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|
const translationSVG = aminoAcidsForSubrange.map(
|
|
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|
function(aminoAcidSliver, index2) {
|
|
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|
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|
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|
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|
|
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|
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|
|
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|
+
if (aminoAcidSliver.positionInCodon === null) {
|
|
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|
+
prevAaSliver = aminoAcidSliver;
|
|
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nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
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return /* @__PURE__ */ React$2.createElement(
|
|
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|
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"rect",
|
|
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|
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{
|
|
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|
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x: index2 * charWidth2,
|
|
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y: height2 / 2 - height2 / 16,
|
|
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|
+
width: charWidth2,
|
|
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|
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height: height2 / 8,
|
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|
+
fill: "grey",
|
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|
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stroke: "black",
|
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strokeWidth: 1
|
|
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|
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}
|
|
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|
+
);
|
|
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|
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}
|
|
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|
+
const isEndFiller = (index2 === 0 || (prevAaSliver == null ? void 0 : prevAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === (annotation.forward ? 2 : 0);
|
|
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|
+
const isStartFiller = (index2 === lastIndex || (nextAaSliver == null ? void 0 : nextAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === (annotation.forward ? 0 : 2);
|
|
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|
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let isTruncatedEnd = (index2 === 0 || (prevAaSliver == null ? void 0 : prevAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === 1;
|
|
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|
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let isTruncatedStart = (index2 === lastIndex || (nextAaSliver == null ? void 0 : nextAaSliver.positionInCodon) === null) && aminoAcidSliver.positionInCodon === 1;
|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
}
|
|
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|
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const isStartFiller = index2 === aminoAcidsForSubrange.length - 1 && aminoAcidSliver.positionInCodon === (annotation.forward ? 0 : 2);
|
|
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|
if (aminoAcidSliver.positionInCodon !== 1 && !isStartFiller && !isEndFiller) {
|
|
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|
+
prevAaSliver = aminoAcidSliver;
|
|
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|
+
nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
return null;
|
|
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118797
|
}
|
|
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118798
|
const { gapsInside, gapsBefore } = getGaps(aminoAcidSliver.codonRange);
|
|
@@ -118763,10 +118809,12 @@ const _Translation = class _Translation extends React$2.Component {
|
|
|
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|
} else {
|
|
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118810
|
color2 = aminoAcid.color;
|
|
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|
}
|
|
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|
+
prevAaSliver = aminoAcidSliver;
|
|
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|
+
nextAaSliver = aminoAcidsForSubrange[index2 + 2];
|
|
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|
return /* @__PURE__ */ React$2.createElement(
|
|
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|
AASliver$1,
|
|
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|
{
|
|
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|
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isFiller: isEndFiller || isStartFiller,
|
|
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|
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isFiller: isEndFiller || isStartFiller || isTruncatedEnd && isTruncatedStart,
|
|
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|
isTruncatedEnd,
|
|
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|
isTruncatedStart,
|
|
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|
onClick: function(event) {
|
|
@@ -118997,7 +119045,7 @@ const Labels$2 = onlyUpdateForKeys([
|
|
|
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119045
|
"editorName"
|
|
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|
])(Labels$1);
|
|
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|
const DrawLabel = withHover(
|
|
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|
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(
|
|
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|
+
(_w = class extends React$2.Component {
|
|
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|
render() {
|
|
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|
const {
|
|
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119051
|
hovered,
|
|
@@ -119101,7 +119149,7 @@ const DrawLabel = withHover(
|
|
|
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119149
|
}
|
|
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119150
|
));
|
|
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|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_w, "DrawLabelInner"), _w)
|
|
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|
);
|
|
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119154
|
const labelClassNames = {
|
|
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119155
|
cutsites: "veCutsiteLabel",
|
|
@@ -120999,7 +121047,7 @@ function showFileDialog({ multiple = false, onSelect }) {
|
|
|
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121047
|
}
|
|
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121048
|
__name(showFileDialog, "showFileDialog");
|
|
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|
const name = "@teselagen/ove";
|
|
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|
-
const version = "0.5.
|
|
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|
+
const version = "0.5.13";
|
|
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121051
|
const main = "./src/index.js";
|
|
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121052
|
const type = "module";
|
|
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121053
|
const exports$1 = {
|
|
@@ -121079,8 +121127,8 @@ const useAnnotationLimits = /* @__PURE__ */ __name(() => useLocalStorageState("a
|
|
|
121079
121127
|
cutsites: 100
|
|
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121128
|
}
|
|
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121129
|
}), "useAnnotationLimits");
|
|
121082
|
-
function LimitAnnotations(
|
|
121083
|
-
var
|
|
121130
|
+
function LimitAnnotations(_x) {
|
|
121131
|
+
var _y = _x, { type: type2 } = _y, rest = __objRest(_y, ["type"]);
|
|
121084
121132
|
const [limits = {}, setLimits] = useAnnotationLimits();
|
|
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121133
|
return /* @__PURE__ */ React$2.createElement(core$5.MenuItem, __spreadValues({ icon: "blank", shouldDismissPopover: false }, rest), [50, 100, 200, 400].map((n2) => /* @__PURE__ */ React$2.createElement(
|
|
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121134
|
core$5.MenuItem,
|
|
@@ -127239,7 +127287,7 @@ const commonConfigResolver = {
|
|
|
127239
127287
|
};
|
|
127240
127288
|
const DEFAULT_AXIS_THRESHOLD = 0;
|
|
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127289
|
const coordinatesConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigResolver), {}, {
|
|
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|
-
axis(
|
|
127290
|
+
axis(_v2, _k, {
|
|
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127291
|
axis
|
|
127244
127292
|
}) {
|
|
127245
127293
|
this.lockDirection = axis === "lock";
|
|
@@ -127313,7 +127361,7 @@ const DEFAULT_DRAG_AXIS_THRESHOLD = {
|
|
|
127313
127361
|
pen: 8
|
|
127314
127362
|
};
|
|
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127363
|
_objectSpread2$1(_objectSpread2$1({}, coordinatesConfigResolver), {}, {
|
|
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|
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device(
|
|
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|
+
device(_v2, _k, {
|
|
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|
pointer: {
|
|
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127366
|
touch = false,
|
|
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127367
|
lock = false,
|
|
@@ -127339,7 +127387,7 @@ _objectSpread2$1(_objectSpread2$1({}, coordinatesConfigResolver), {}, {
|
|
|
127339
127387
|
return void 0;
|
|
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127388
|
return value ? value : preventScroll !== void 0 ? "y" : void 0;
|
|
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127389
|
},
|
|
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|
-
pointerCapture(
|
|
127390
|
+
pointerCapture(_v2, _k, {
|
|
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127391
|
pointer: {
|
|
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127392
|
capture = true,
|
|
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127393
|
buttons = 1,
|
|
@@ -127670,7 +127718,7 @@ const _PinchEngine = class _PinchEngine extends Engine {
|
|
|
127670
127718
|
__name(_PinchEngine, "PinchEngine");
|
|
127671
127719
|
let PinchEngine = _PinchEngine;
|
|
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127720
|
const pinchConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigResolver), {}, {
|
|
127673
|
-
device(
|
|
127721
|
+
device(_v2, _k, {
|
|
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127722
|
shared: shared2,
|
|
127675
127723
|
pointer: {
|
|
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127724
|
touch = false
|
|
@@ -127688,7 +127736,7 @@ const pinchConfigResolver = _objectSpread2$1(_objectSpread2$1({}, commonConfigRe
|
|
|
127688
127736
|
return "touch";
|
|
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127737
|
}
|
|
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127738
|
},
|
|
127691
|
-
bounds(
|
|
127739
|
+
bounds(_v2, _k, {
|
|
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127740
|
scaleBounds = {},
|
|
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127741
|
angleBounds = {}
|
|
127694
127742
|
}) {
|
|
@@ -128987,7 +129035,7 @@ const _Minimap = class _Minimap extends React$2.Component {
|
|
|
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129035
|
__name(_Minimap, "Minimap");
|
|
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129036
|
let Minimap = _Minimap;
|
|
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129037
|
const YellowScrollHandle = view(
|
|
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|
-
(
|
|
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|
+
(_z = class extends React$2.Component {
|
|
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129039
|
render() {
|
|
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129040
|
const {
|
|
128993
129041
|
scrollHandleWidth,
|
|
@@ -129142,7 +129190,7 @@ const YellowScrollHandle = view(
|
|
|
129142
129190
|
)
|
|
129143
129191
|
);
|
|
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129192
|
}
|
|
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|
-
}, __name(
|
|
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|
+
}, __name(_z, "YellowScrollHandleInner"), _z)
|
|
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129194
|
);
|
|
129147
129195
|
function getTrimmedRangesToDisplay({ trimmedRange, seqLen }) {
|
|
129148
129196
|
if (!trimmedRange)
|
|
@@ -129515,14 +129563,14 @@ function getRangeAnglesSpecial() {
|
|
|
129515
129563
|
}, rest);
|
|
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129564
|
}
|
|
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129565
|
__name(getRangeAnglesSpecial, "getRangeAnglesSpecial");
|
|
129518
|
-
function PositionAnnotationOnCircle(
|
|
129519
|
-
var
|
|
129566
|
+
function PositionAnnotationOnCircle(_A) {
|
|
129567
|
+
var _B = _A, {
|
|
129520
129568
|
children,
|
|
129521
129569
|
height: height2 = 0,
|
|
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129570
|
sAngle = 0,
|
|
129523
129571
|
eAngle = 0,
|
|
129524
129572
|
forward = true
|
|
129525
|
-
} =
|
|
129573
|
+
} = _B, rest = __objRest(_B, [
|
|
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129574
|
"children",
|
|
129527
129575
|
"height",
|
|
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129576
|
"sAngle",
|
|
@@ -134041,7 +134089,7 @@ const SelectDialog = redux.compose(
|
|
|
134041
134089
|
}),
|
|
134042
134090
|
tgFormValues("from", "to")
|
|
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134091
|
)(
|
|
134044
|
-
(
|
|
134092
|
+
(_C = class extends React$2.Component {
|
|
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134093
|
constructor() {
|
|
134046
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|
super(...arguments);
|
|
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134095
|
__publicField(this, "updateTempHighlight", /* @__PURE__ */ __name(({ isStart, isEnd } = {}) => (val2) => {
|
|
@@ -134152,7 +134200,7 @@ const SelectDialog = redux.compose(
|
|
|
134152
134200
|
))
|
|
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134201
|
);
|
|
134154
134202
|
}
|
|
134155
|
-
}, __name(
|
|
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|
+
}, __name(_C, "SelectDialog"), _C)
|
|
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134204
|
);
|
|
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134205
|
const normalizeToInt = /* @__PURE__ */ __name((val2) => {
|
|
134158
134206
|
const int2 = Math.round(val2);
|
|
@@ -137607,8 +137655,8 @@ function getTrackFromEvent(event, allTracks) {
|
|
|
137607
137655
|
return track2;
|
|
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137656
|
}
|
|
137609
137657
|
__name(getTrackFromEvent, "getTrackFromEvent");
|
|
137610
|
-
const PerformantSelectionLayer = view((
|
|
137611
|
-
var
|
|
137658
|
+
const PerformantSelectionLayer = view((_D) => {
|
|
137659
|
+
var _E = _D, { easyStore: easyStore2 } = _E, rest = __objRest(_E, ["easyStore"]);
|
|
137612
137660
|
const seqLen = rest.sequenceLength - 1;
|
|
137613
137661
|
return /* @__PURE__ */ React$2.createElement(
|
|
137614
137662
|
SelectionLayer$3,
|
|
@@ -139448,8 +139496,8 @@ const AlignmentView$1 = compose(
|
|
|
139448
139496
|
})
|
|
139449
139497
|
)
|
|
139450
139498
|
)(AlignmentView);
|
|
139451
|
-
const PerformantCaret = view((
|
|
139452
|
-
var
|
|
139499
|
+
const PerformantCaret = view((_F) => {
|
|
139500
|
+
var _G = _F, { easyStore: easyStore2 } = _G, rest = __objRest(_G, ["easyStore"]);
|
|
139453
139501
|
return /* @__PURE__ */ React$2.createElement(Caret$2, __spreadValues({ caretPosition: easyStore2.caretPosition }, rest));
|
|
139454
139502
|
});
|
|
139455
139503
|
function cleanTracks(alignmentTracks) {
|
|
@@ -141714,14 +141762,14 @@ const cutsiteTool = connectToEditor(
|
|
|
141714
141762
|
}, toolbarItemProps))
|
|
141715
141763
|
);
|
|
141716
141764
|
});
|
|
141717
|
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function CutsiteToolDropDown(
|
|
141718
|
-
var
|
|
141765
|
+
function CutsiteToolDropDown(_H) {
|
|
141766
|
+
var _I = _H, {
|
|
141719
141767
|
editorName,
|
|
141720
141768
|
toggleDropdown,
|
|
141721
141769
|
annotationVisibilityShow: annotationVisibilityShow2,
|
|
141722
141770
|
withDigestTool,
|
|
141723
141771
|
createNewDigest: createNewDigest2
|
|
141724
|
-
} =
|
|
141772
|
+
} = _I, rest = __objRest(_I, [
|
|
141725
141773
|
"editorName",
|
|
141726
141774
|
"toggleDropdown",
|
|
141727
141775
|
"annotationVisibilityShow",
|
|
@@ -141849,7 +141897,7 @@ const orfTool = connectToEditor(
|
|
|
141849
141897
|
);
|
|
141850
141898
|
});
|
|
141851
141899
|
const OrfToolDropdown = withEditorProps(
|
|
141852
|
-
(
|
|
141900
|
+
(_J = class extends React$2.Component {
|
|
141853
141901
|
constructor(props) {
|
|
141854
141902
|
super(props);
|
|
141855
141903
|
this.commands = getCommands(this);
|
|
@@ -141875,7 +141923,7 @@ const OrfToolDropdown = withEditorProps(
|
|
|
141875
141923
|
}
|
|
141876
141924
|
));
|
|
141877
141925
|
}
|
|
141878
|
-
}, __name(
|
|
141926
|
+
}, __name(_J, "OrfDropdown"), _J)
|
|
141879
141927
|
);
|
|
141880
141928
|
const opts = [
|
|
141881
141929
|
{ label: "DNA", value: "DNA" },
|
|
@@ -147274,8 +147322,8 @@ function StandaloneVersionHistoryView(props) {
|
|
|
147274
147322
|
return /* @__PURE__ */ React$2.createElement(reactRedux.Provider, { store }, /* @__PURE__ */ React$2.createElement(VersionHistoryView$1, __spreadValues({}, __spreadValues({}, props))));
|
|
147275
147323
|
}
|
|
147276
147324
|
__name(StandaloneVersionHistoryView, "StandaloneVersionHistoryView");
|
|
147277
|
-
function createVectorEditor(_node,
|
|
147278
|
-
var
|
|
147325
|
+
function createVectorEditor(_node, _K = {}) {
|
|
147326
|
+
var _L = _K, { editorName = "StandaloneEditor" } = _L, rest = __objRest(_L, ["editorName"]);
|
|
147279
147327
|
if (!store) {
|
|
147280
147328
|
store = makeStore();
|
|
147281
147329
|
}
|
|
@@ -147308,8 +147356,8 @@ function createVectorEditor(_node, _I = {}) {
|
|
|
147308
147356
|
return editor;
|
|
147309
147357
|
}
|
|
147310
147358
|
__name(createVectorEditor, "createVectorEditor");
|
|
147311
|
-
function createVersionHistoryView(node2,
|
|
147312
|
-
var
|
|
147359
|
+
function createVersionHistoryView(node2, _M = {}) {
|
|
147360
|
+
var _N = _M, { editorName = "StandaloneVersionHistoryView" } = _N, rest = __objRest(_N, ["editorName"]);
|
|
147313
147361
|
if (!store) {
|
|
147314
147362
|
store = makeStore();
|
|
147315
147363
|
}
|