@teselagen/ove 0.5.11 → 0.5.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AlignmentTool/index.d.ts +4 -0
- package/AlignmentView/AlignmentVisibilityTool.d.ts +2 -0
- package/AlignmentView/EditTrackNameDialog.d.ts +1 -0
- package/AlignmentView/HorizontalPanelDragHandle.d.ts +3 -0
- package/AlignmentView/Minimap.d.ts +63 -0
- package/AlignmentView/Mismatches.d.ts +20 -0
- package/AlignmentView/PairwiseAlignmentView.d.ts +9 -0
- package/AlignmentView/PerformantSelectionLayer.d.ts +1 -0
- package/AlignmentView/coerceInitialValue.d.ts +4 -0
- package/AlignmentView/getGapMap.d.ts +1 -0
- package/AlignmentView/getGaps.d.ts +4 -0
- package/AlignmentView/getPairwiseOverviewLinearViewOptions.d.ts +22 -0
- package/AlignmentView/getTrackFromEvent.d.ts +1 -0
- package/AlignmentView/index.d.ts +107 -0
- package/AlignmentView/isTargetWithinEl.d.ts +1 -0
- package/AlignmentView/updateTrackHelper.d.ts +10 -0
- package/AutoAnnotate.d.ts +4 -0
- package/AutoAnnotateBpMatchingDialog.d.ts +1 -0
- package/CircularView/Axis.d.ts +12 -0
- package/CircularView/AxisNumbers.d.ts +7 -0
- package/CircularView/Caret.d.ts +2 -0
- package/CircularView/CircularDnaSequence.d.ts +10 -0
- package/CircularView/CircularZoomMinimap.d.ts +4 -0
- package/CircularView/Cutsite.d.ts +4 -0
- package/CircularView/Cutsites.d.ts +18 -0
- package/CircularView/DeletionLayer.d.ts +8 -0
- package/CircularView/Feature.d.ts +1 -0
- package/CircularView/Labels/index.d.ts +22 -0
- package/CircularView/Labels/relaxLabelAngles.d.ts +2 -0
- package/CircularView/Labels/relaxLabels_DEPRECATED.d.ts +1 -0
- package/CircularView/Orf.d.ts +6 -0
- package/CircularView/Part.d.ts +9 -0
- package/CircularView/PositionAnnotationOnCircle.d.ts +12 -0
- package/CircularView/Primer.d.ts +1 -0
- package/CircularView/RotateCircularViewSlider.d.ts +7 -0
- package/CircularView/SelectionLayer.d.ts +2 -0
- package/CircularView/VeTopRightContainer.d.ts +4 -0
- package/CircularView/ZoomCircularViewSlider.d.ts +8 -0
- package/CircularView/drawAnnotations.d.ts +10 -0
- package/CircularView/drawDirectedPiePiece.d.ts +11 -0
- package/CircularView/getAngleForPositionMidpoint.d.ts +1 -0
- package/CircularView/getInternalLabel.d.ts +11 -0
- package/CircularView/getRangeAnglesSpecial.d.ts +7 -0
- package/CircularView/getYOffset.d.ts +1 -0
- package/CircularView/index.d.ts +20 -0
- package/CircularView/normalizeAngle.d.ts +1 -0
- package/CircularView/normalizeAngleRange.d.ts +1 -0
- package/CircularView/positionCutsites.d.ts +4 -0
- package/CircularView/shouldFlipText.d.ts +1 -0
- package/CircularView/utils/polarToSpecialCartesian.d.ts +4 -0
- package/CreateAnnotationsPage.d.ts +10 -0
- package/CreateCustomEnzyme/index.d.ts +2 -0
- package/CutsiteFilter/AdditionalCutsiteInfoDialog.d.ts +29 -0
- package/CutsiteFilter/index.d.ts +3 -0
- package/CutsiteFilter/withRestrictionEnzymes.d.ts +1 -0
- package/DigestTool/AddLaddersDialog.d.ts +1 -0
- package/DigestTool/DigestTool.d.ts +11 -0
- package/DigestTool/Ladder.d.ts +11 -0
- package/DigestTool/createFragmentLines.d.ts +0 -0
- package/DigestTool/ladderDefaults.d.ts +5 -0
- package/Editor/CommandHotkeyHandler.d.ts +2 -0
- package/Editor/DropHandler.d.ts +7 -0
- package/Editor/FillWindow.d.ts +9 -0
- package/Editor/index.d.ts +41 -0
- package/Editor/userDefinedHandlersAndOpts.d.ts +1 -0
- package/EnzymeViewer/index.d.ts +11 -0
- package/FindBar/index.d.ts +12 -0
- package/GlobalDialog.d.ts +1 -0
- package/GlobalDialogUtils.d.ts +12 -0
- package/LinearView/SequenceName.d.ts +5 -0
- package/LinearView/ZoomLinearView.d.ts +7 -0
- package/LinearView/index.d.ts +5 -0
- package/ManageEnzymes/index.d.ts +2 -0
- package/MenuBar/defaultConfig.d.ts +225 -0
- package/MenuBar/index.d.ts +2 -0
- package/MenuBar/viewSubmenu.d.ts +146 -0
- package/PCRTool/PCRTool.d.ts +2 -0
- package/Reflex/Browser.d.ts +19 -0
- package/Reflex/ReflexContainer.d.ts +63 -0
- package/Reflex/ReflexElement.d.ts +33 -0
- package/Reflex/ReflexEvents.d.ts +7 -0
- package/Reflex/ReflexSplitter.d.ts +33 -0
- package/Reflex/index.d.ts +4 -0
- package/RowItem/AnnotationContainerHolder.d.ts +2 -0
- package/RowItem/AnnotationPositioner.d.ts +7 -0
- package/RowItem/Axis.d.ts +2 -0
- package/RowItem/Caret/index.d.ts +2 -0
- package/RowItem/Chromatograms/Chromatogram.d.ts +1 -0
- package/RowItem/CutsiteSelectionLayers.d.ts +4 -0
- package/RowItem/Cutsites.d.ts +2 -0
- package/RowItem/DeletionLayers/index.d.ts +2 -0
- package/RowItem/Labels.d.ts +2 -0
- package/RowItem/Orf.d.ts +2 -0
- package/RowItem/Orfs.d.ts +2 -0
- package/RowItem/SelectionLayer/index.d.ts +2 -0
- package/RowItem/Sequence.d.ts +8 -0
- package/RowItem/StackedAnnotations/PointedAnnotation.d.ts +2 -0
- package/RowItem/StackedAnnotations/getStructuredBases.d.ts +17 -0
- package/RowItem/StackedAnnotations/index.d.ts +2 -0
- package/RowItem/StackedAnnotations/primerBases.d.ts +10 -0
- package/RowItem/Translations/AASliver.d.ts +2 -0
- package/RowItem/Translations/Translation.d.ts +2 -0
- package/RowItem/Translations/index.d.ts +2 -0
- package/RowItem/constants.d.ts +3 -0
- package/RowItem/getCutsiteLabelHeights.d.ts +8 -0
- package/RowItem/getXStartAndWidthFromNonCircularRange.d.ts +4 -0
- package/RowItem/getXStartAndWidthOfRangeWrtRow.d.ts +11 -0
- package/RowItem/getXStartAndWidthOfRowAnnotation.d.ts +6 -0
- package/RowItem/index.d.ts +1 -0
- package/RowItem/partOverhangs.d.ts +1 -0
- package/RowItem/utils.d.ts +4 -0
- package/RowView/estimateRowHeight.d.ts +6 -0
- package/RowView/index.d.ts +10 -0
- package/SimpleCircularOrLinearView.d.ts +2 -0
- package/SimpleOligoPreview.d.ts +7 -0
- package/StatusBar/MeltingTemp.d.ts +5 -0
- package/StatusBar/index.d.ts +15 -0
- package/ToolBar/ToolbarItem.d.ts +14 -0
- package/ToolBar/alignmentTool.d.ts +6 -0
- package/ToolBar/array_move.d.ts +1 -0
- package/ToolBar/cutsiteTool.d.ts +5 -0
- package/ToolBar/downloadTool.d.ts +5 -0
- package/ToolBar/editTool.d.ts +10 -0
- package/ToolBar/featureTool.d.ts +5 -0
- package/ToolBar/findTool.d.ts +2 -0
- package/ToolBar/importTool.d.ts +2 -0
- package/ToolBar/index.d.ts +2 -0
- package/ToolBar/inlineFindTool.d.ts +5 -0
- package/ToolBar/oligoTool.d.ts +5 -0
- package/ToolBar/orfTool.d.ts +5 -0
- package/ToolBar/partTool.d.ts +5 -0
- package/ToolBar/printTool.d.ts +6 -0
- package/ToolBar/redoTool.d.ts +5 -0
- package/ToolBar/saveTool.d.ts +5 -0
- package/ToolBar/undoTool.d.ts +5 -0
- package/ToolBar/versionHistoryTool.d.ts +5 -0
- package/ToolBar/visibilityTool.d.ts +5 -0
- package/VersionHistoryView/index.d.ts +23 -0
- package/addAlignment.d.ts +1 -0
- package/commands/getOveHotkeyDefs.d.ts +4 -0
- package/commands/index.d.ts +648 -0
- package/constants/constants.d.ts +2 -0
- package/constants/dnaToColor.d.ts +8 -0
- package/constants/draggableClassnames.d.ts +6 -0
- package/constants/findToolConstants.d.ts +1 -0
- package/constants/orfFrameToColorMap.d.ts +7 -0
- package/constants/rowviewContants.d.ts +3 -0
- package/constants/specialCutsiteFilterOptions.d.ts +31 -0
- package/constants.d.ts +1 -0
- package/createVectorEditor/index.d.ts +21 -0
- package/createVectorEditor/makeStore.d.ts +2 -0
- package/fileUtils.d.ts +12 -0
- package/helperComponents/AddOrEditAnnotationDialog/index.d.ts +6 -0
- package/helperComponents/AddOrEditFeatureDialog/index.d.ts +2 -0
- package/helperComponents/AddOrEditPartDialog/index.d.ts +2 -0
- package/helperComponents/AddOrEditPrimerDialog/EditCaretPosition.d.ts +15 -0
- package/helperComponents/AddOrEditPrimerDialog/index.d.ts +2 -0
- package/helperComponents/EnzymesDialog/index.d.ts +2 -0
- package/helperComponents/GoToDialog.d.ts +2 -0
- package/helperComponents/MergeFeaturesDialog/index.d.ts +2 -0
- package/helperComponents/MultipleSeqsDetectedOnImportDialog.d.ts +1 -0
- package/helperComponents/PinchHelper/PinchHelper.d.ts +6 -0
- package/helperComponents/PrintDialog/index.d.ts +2 -0
- package/helperComponents/PropertiesDialog/ColorPicker.d.ts +6 -0
- package/helperComponents/PropertiesDialog/CutsiteProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/FeatureProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/GenbankView.d.ts +2 -0
- package/helperComponents/PropertiesDialog/GeneralProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/GenericAnnotationProperties.d.ts +10 -0
- package/helperComponents/PropertiesDialog/OrfProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/PartProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/PrimerProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/SingleEnzymeCutsiteInfo.d.ts +12 -0
- package/helperComponents/PropertiesDialog/TranslationProperties.d.ts +2 -0
- package/helperComponents/PropertiesDialog/index.d.ts +10 -0
- package/helperComponents/PropertiesDialog/typeField.d.ts +7 -0
- package/helperComponents/PropertiesDialog/utils.d.ts +5 -0
- package/helperComponents/RemoveDuplicates/index.d.ts +2 -0
- package/helperComponents/RenameSequenceDialog.d.ts +2 -0
- package/helperComponents/SelectDialog.d.ts +2 -0
- package/helperComponents/UncontrolledSliderWithPlusMinusBtns.d.ts +13 -0
- package/helperComponents/VeWarning/index.d.ts +2 -0
- package/helperComponents/createSimpleDialog.d.ts +1 -0
- package/helperComponents/partTagSearch.d.ts +1 -0
- package/helperComponents/withHover.d.ts +11 -0
- package/html2canvas.esm-GLpiTZLt.cjs +7891 -0
- package/html2canvas.esm-nFNn58sx.js +7891 -0
- package/index.cjs.js +700 -616
- package/index.d.ts +25 -0
- package/index.es.js +702 -618
- package/index.umd.js +1472 -504
- package/package.json +2 -2
- package/redux/alignments.d.ts +9 -0
- package/redux/annotationLabelVisibility.d.ts +8 -0
- package/redux/annotationVisibility.d.ts +45 -0
- package/redux/annotationsToSupport.d.ts +8 -0
- package/redux/caretPosition.d.ts +4 -0
- package/redux/charWidth.d.ts +3 -0
- package/redux/copyOptions.d.ts +14 -0
- package/redux/createYourOwnEnzyme.d.ts +11 -0
- package/redux/deletionLayers.d.ts +5 -0
- package/redux/digestTool.d.ts +7 -0
- package/redux/featureLengthsToHide.d.ts +7 -0
- package/redux/findTool.d.ts +12 -0
- package/redux/frameTranslations.d.ts +13 -0
- package/redux/hoveredAnnotation.d.ts +4 -0
- package/redux/index.d.ts +20 -0
- package/redux/labelLineIntensity.d.ts +3 -0
- package/redux/labelSize.d.ts +3 -0
- package/redux/lastSavedId.d.ts +3 -0
- package/redux/middleware.d.ts +2 -0
- package/redux/minimumOrfSize.d.ts +4 -0
- package/redux/modalActions.d.ts +0 -0
- package/redux/panelsShown.d.ts +21 -0
- package/redux/partLengthsToHide.d.ts +7 -0
- package/redux/primerLengthsToHide.d.ts +7 -0
- package/redux/propertiesTool.d.ts +6 -0
- package/redux/readOnly.d.ts +4 -0
- package/redux/replacementLayers.d.ts +5 -0
- package/redux/restrictionEnzymes.d.ts +13 -0
- package/redux/selectedAnnotations.d.ts +13 -0
- package/redux/selectedPartTags.d.ts +3 -0
- package/redux/selectionLayer.d.ts +7 -0
- package/redux/sequenceData/circular.d.ts +3 -0
- package/redux/sequenceData/description.d.ts +3 -0
- package/redux/sequenceData/features.d.ts +4 -0
- package/redux/sequenceData/index.d.ts +10 -0
- package/redux/sequenceData/lineageLines.d.ts +2 -0
- package/redux/sequenceData/materiallyAvailable.d.ts +3 -0
- package/redux/sequenceData/name.d.ts +3 -0
- package/redux/sequenceData/parts.d.ts +4 -0
- package/redux/sequenceData/primers.d.ts +4 -0
- package/redux/sequenceData/sequence.d.ts +3 -0
- package/redux/sequenceData/sharedActionCreators.d.ts +0 -0
- package/redux/sequenceData/translations.d.ts +4 -0
- package/redux/sequenceData/upsertDeleteActionGenerator.d.ts +3 -0
- package/redux/sequenceDataHistory.d.ts +8 -0
- package/redux/showGCContent.d.ts +3 -0
- package/redux/toolBar.d.ts +6 -0
- package/redux/uppercaseSequenceMapFont.d.ts +3 -0
- package/redux/useAdditionalOrfStartCodons.d.ts +3 -0
- package/redux/utils/addDashesForMatchStartAndEndForTracks/index.d.ts +1 -0
- package/redux/utils/addMetaToActionCreators.d.ts +1 -0
- package/redux/utils/createMergedDefaultStateReducer.d.ts +4 -0
- package/redux/utils/createMetaAction.d.ts +1 -0
- package/redux/versionHistory.d.ts +5 -0
- package/selectors/annotationLabelVisibility.d.ts +2 -0
- package/selectors/annotationSearchSelector.d.ts +7 -0
- package/selectors/cdsFeaturesSelector.d.ts +6 -0
- package/selectors/circularSelector.d.ts +1 -0
- package/selectors/cutsiteLabelColorSelector.d.ts +6 -0
- package/selectors/cutsitesByRangeSelector.d.ts +0 -0
- package/selectors/cutsitesSelector.d.ts +14 -0
- package/selectors/editorSelector.d.ts +2 -0
- package/selectors/featuresSelector.d.ts +6 -0
- package/selectors/filteredCutsitesSelector.d.ts +6 -0
- package/selectors/filteredFeaturesSelector.d.ts +6 -0
- package/selectors/filteredPartsSelector.d.ts +6 -0
- package/selectors/filteredPrimersSelector.d.ts +6 -0
- package/selectors/filteredRestrictionEnzymesSelector.d.ts +2 -0
- package/selectors/getAdditionalEnzymesSelector.d.ts +6 -0
- package/selectors/index.d.ts +41 -0
- package/selectors/isEnzymeFilterAndSelector.d.ts +2 -0
- package/selectors/minimumOrfSizeSelector.d.ts +2 -0
- package/selectors/orfsSelector.d.ts +26 -0
- package/selectors/partsSelector.d.ts +6 -0
- package/selectors/primersSelector.d.ts +6 -0
- package/selectors/restrictionEnzymesSelector.d.ts +6 -0
- package/selectors/searchLayersSelector.d.ts +6 -0
- package/selectors/selectedAnnotationsSelector.d.ts +2 -0
- package/selectors/selectedCutsitesSelector.d.ts +12 -0
- package/selectors/sequenceDataSelector.d.ts +2 -0
- package/selectors/sequenceLengthSelector.d.ts +1 -0
- package/selectors/sequenceSelector.d.ts +1 -0
- package/selectors/tagsToBoldSelector.d.ts +2 -0
- package/selectors/translationSearchMatchesSelector.d.ts +6 -0
- package/selectors/translationsRawSelector.d.ts +6 -0
- package/selectors/translationsSelector.d.ts +16 -0
- package/src/AlignmentTool/index.js +7 -11
- package/src/ToolBar/index.js +12 -12
- package/style.css +33 -4
- package/updateEditor.d.ts +3 -0
- package/utils/PassThrough.d.ts +3 -0
- package/utils/addWrappedAddons.d.ts +1 -0
- package/utils/annotationTypes.d.ts +6 -0
- package/utils/arrayUtils.d.ts +3 -0
- package/utils/calculateTickMarkPositionsForGivenRange.d.ts +7 -0
- package/utils/cleanSequenceData_DEPRECATED/arrayToObjWithIds.d.ts +1 -0
- package/utils/combineReducersDontIgnoreKeys.d.ts +1 -0
- package/utils/commandUtils.d.ts +1 -0
- package/utils/editorUtils.d.ts +36 -0
- package/utils/getAnnotationClassnames.d.ts +6 -0
- package/utils/getAnnotationNameAndStartStopString.d.ts +14 -0
- package/utils/getVisibleStartEnd.d.ts +7 -0
- package/utils/massageTickSpacing.d.ts +1 -0
- package/utils/onlyUpdateForKeysDeep.d.ts +2 -0
- package/utils/prepareRowData.d.ts +6 -0
- package/utils/proteinUtils.d.ts +1 -0
- package/utils/pureNoFunc.d.ts +2 -0
- package/utils/selectionLayer.d.ts +5 -0
- package/utils/shouldRerender.d.ts +2 -0
- package/utils/showFileDialog.d.ts +4 -0
- package/utils/updateLabelsForInViewFeatures.d.ts +3 -0
- package/utils/updateLabelsForInViewFeaturesCircView.d.ts +0 -0
- package/utils/useAAColorType.d.ts +2 -0
- package/utils/useAnnotationLimits.d.ts +14 -0
- package/utils/useChromatogramPrefs.d.ts +7 -0
- package/utils/useLadders.d.ts +2 -0
- package/utils/useMeltingTemp.d.ts +2 -0
- package/utils/useTmType.d.ts +2 -0
- package/withEditorInteractions/Keyboard.d.ts +16 -0
- package/withEditorInteractions/clickAndDragUtils.d.ts +67 -0
- package/withEditorInteractions/createSequenceInputPopup.d.ts +1 -0
- package/withEditorInteractions/getBpsPerRow.d.ts +9 -0
- package/withEditorInteractions/index.d.ts +2 -0
- package/withEditorInteractions/isElementInViewport.d.ts +2 -0
- package/withEditorInteractions/moveCaret.d.ts +10 -0
- package/withEditorProps/index.d.ts +17 -0
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declare namespace _default {
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export { translationsSelector };
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export { getAdditionalEnzymesSelector };
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export { cutsitesSelector };
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export { sequenceDataSelector };
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export { sequenceLengthSelector };
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export { selectedCutsitesSelector };
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export { orfsSelector };
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export { circularSelector };
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export { annotationSearchSelector };
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export { searchLayersSelector };
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export { filteredCutsitesSelector };
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export { filteredRestrictionEnzymesSelector };
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export { filteredPrimersSelector };
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export { filteredFeaturesSelector };
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export { filteredPartsSelector };
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export { isEnzymeFilterAndSelector };
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export { restrictionEnzymesSelector };
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export { sequenceSelector };
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export { cutsiteLabelColorSelector };
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}
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export default _default;
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import translationsSelector from "./translationsSelector";
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import getAdditionalEnzymesSelector from "./getAdditionalEnzymesSelector";
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import cutsitesSelector from "./cutsitesSelector";
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import sequenceDataSelector from "./sequenceDataSelector";
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import sequenceLengthSelector from "./sequenceLengthSelector";
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import selectedCutsitesSelector from "./selectedCutsitesSelector";
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import orfsSelector from "./orfsSelector";
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import circularSelector from "./circularSelector";
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import annotationSearchSelector from "./annotationSearchSelector";
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import searchLayersSelector from "./searchLayersSelector";
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import filteredCutsitesSelector from "./filteredCutsitesSelector";
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import filteredRestrictionEnzymesSelector from "./filteredRestrictionEnzymesSelector";
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import filteredPrimersSelector from "./filteredPrimersSelector";
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import filteredFeaturesSelector from "./filteredFeaturesSelector";
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import filteredPartsSelector from "./filteredPartsSelector";
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import isEnzymeFilterAndSelector from "./isEnzymeFilterAndSelector";
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import restrictionEnzymesSelector from "./restrictionEnzymesSelector";
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import sequenceSelector from "./sequenceSelector";
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import cutsiteLabelColorSelector from "./cutsiteLabelColorSelector";
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declare const _default: ((state: any) => {
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end: number;
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length: number;
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internalStartCodonIndices: never[];
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frame: number;
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forward: any;
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annotationTypePlural: string;
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isOrf: boolean;
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id: any;
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}[]) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any) => {
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start: number;
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end: number;
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length: number;
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internalStartCodonIndices: never[];
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frame: number;
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forward: any;
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annotationTypePlural: string;
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isOrf: boolean;
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id: any;
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}[], {
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clearCache: () => void;
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}> & {
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clearCache: () => void;
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};
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export default _default;
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declare const _default: ((state: any) => any[]) & import("reselect").OutputSelectorFields<(args_0: any, args_1: any, args_2: any, args_3: any, args_4: any, args_5: any, args_6: any, args_7: any) => any[], {
|
|
2
|
+
clearCache: () => void;
|
|
3
|
+
}> & {
|
|
4
|
+
clearCache: () => void;
|
|
5
|
+
};
|
|
6
|
+
export default _default;
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
declare const _default: ((state: any) => {
|
|
2
|
+
idStack: any;
|
|
3
|
+
idMap: {};
|
|
4
|
+
}) & import("reselect").OutputSelectorFields<(args_0: any) => {
|
|
5
|
+
idStack: any;
|
|
6
|
+
idMap: {};
|
|
7
|
+
}, {
|
|
8
|
+
clearCache: () => void;
|
|
9
|
+
}> & {
|
|
10
|
+
clearCache: () => void;
|
|
11
|
+
};
|
|
12
|
+
export default _default;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function _default(state: any): any;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function _default(state: any): any;
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
declare const _default: ((state: any) => any) & import("reselect").OutputSelectorFields<(args_0: any, args_1: unknown, args_2: any, args_3: {
|
|
2
|
+
start: number;
|
|
3
|
+
end: number;
|
|
4
|
+
length: number;
|
|
5
|
+
internalStartCodonIndices: never[];
|
|
6
|
+
frame: number;
|
|
7
|
+
forward: any;
|
|
8
|
+
annotationTypePlural: string;
|
|
9
|
+
isOrf: boolean;
|
|
10
|
+
id: any;
|
|
11
|
+
}[], args_4: any, args_5: any, args_6: any[], args_7: any, args_8: any, args_9: any, args_10: any, args_11: any, args_12: any) => any, {
|
|
12
|
+
clearCache: () => void;
|
|
13
|
+
}> & {
|
|
14
|
+
clearCache: () => void;
|
|
15
|
+
};
|
|
16
|
+
export default _default;
|
|
@@ -3,14 +3,10 @@ import React from "react";
|
|
|
3
3
|
// import CutsiteFilter from "../CutsiteFilter";
|
|
4
4
|
// import { Tabs, Tab, Button, InputGroup, Intent } from "@blueprintjs/core";
|
|
5
5
|
|
|
6
|
-
export default
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
</div>
|
|
14
|
-
);
|
|
15
|
-
}
|
|
16
|
-
}
|
|
6
|
+
export default ({ height = "100%" }) => {
|
|
7
|
+
return (
|
|
8
|
+
<div style={{ height, overflow: "auto", padding: 10 }}>
|
|
9
|
+
<div>Add an alignment file (.gb, .fasta, .ab)</div>
|
|
10
|
+
</div>
|
|
11
|
+
);
|
|
12
|
+
};
|
package/src/ToolBar/index.js
CHANGED
|
@@ -4,7 +4,7 @@ import versionHistoryTool from "./versionHistoryTool";
|
|
|
4
4
|
// import {connectToEditor} from "../withEditorProps";
|
|
5
5
|
import MenuBar from "../MenuBar";
|
|
6
6
|
import "./style.css";
|
|
7
|
-
import { Button
|
|
7
|
+
import { Button } from "@blueprintjs/core";
|
|
8
8
|
|
|
9
9
|
import downloadTool from "./downloadTool";
|
|
10
10
|
import importTool from "./importTool";
|
|
@@ -198,17 +198,17 @@ export function ToolBar(props) {
|
|
|
198
198
|
}
|
|
199
199
|
const CloseFullscreenButton = props => {
|
|
200
200
|
return (
|
|
201
|
-
|
|
202
|
-
|
|
203
|
-
|
|
204
|
-
|
|
205
|
-
|
|
206
|
-
|
|
207
|
-
|
|
208
|
-
|
|
209
|
-
|
|
210
|
-
|
|
211
|
-
|
|
201
|
+
<Button
|
|
202
|
+
data-tip="Close Fullscreen Mode"
|
|
203
|
+
minimal
|
|
204
|
+
style={{
|
|
205
|
+
marginTop: 2,
|
|
206
|
+
marginRight: 2
|
|
207
|
+
}}
|
|
208
|
+
onClick={props.onClick}
|
|
209
|
+
className="ve-close-fullscreen-button"
|
|
210
|
+
icon="minimize"
|
|
211
|
+
/>
|
|
212
212
|
);
|
|
213
213
|
};
|
|
214
214
|
|
package/style.css
CHANGED
|
@@ -9066,10 +9066,19 @@ button:not(:disabled):active {
|
|
|
9066
9066
|
}
|
|
9067
9067
|
|
|
9068
9068
|
/* to fix tooltip styling issue - https://github.com/palantir/blueprint/issues/3430 */
|
|
9069
|
-
.bp3-popover[style*="transform-origin"][style*="bottom"] .bp3-popover-arrow {
|
|
9070
|
-
|
|
9071
|
-
|
|
9072
|
-
.bp3-popover[style*="transform-origin"][style*="
|
|
9069
|
+
.bp3-popover[style*="transform-origin"][style*="bottom"] .bp3-popover-arrow {
|
|
9070
|
+
transform: translate(0, -0.5px);
|
|
9071
|
+
}
|
|
9072
|
+
.bp3-popover[style*="transform-origin"][style*="left"] .bp3-popover-arrow {
|
|
9073
|
+
transform: translate(0.5px, 0);
|
|
9074
|
+
}
|
|
9075
|
+
.bp3-popover[style*="transform-origin"][style*="top"] .bp3-popover-arrow {
|
|
9076
|
+
transform: translate(0, 0.5px);
|
|
9077
|
+
}
|
|
9078
|
+
.bp3-popover[style*="transform-origin"][style*="right"] .bp3-popover-arrow {
|
|
9079
|
+
transform: translate(-0.5px, 0);
|
|
9080
|
+
}
|
|
9081
|
+
.tippy-box[data-animation=fade][data-state=hidden]{opacity:0}[data-tippy-root]{max-width:calc(100vw - 10px)}.tippy-box{position:relative;background-color:#333;color:#fff;border-radius:4px;font-size:14px;line-height:1.4;white-space:normal;outline:0;transition-property:transform,visibility,opacity}.tippy-box[data-placement^=top]>.tippy-arrow{bottom:0}.tippy-box[data-placement^=top]>.tippy-arrow:before{bottom:-7px;left:0;border-width:8px 8px 0;border-top-color:initial;transform-origin:center top}.tippy-box[data-placement^=bottom]>.tippy-arrow{top:0}.tippy-box[data-placement^=bottom]>.tippy-arrow:before{top:-7px;left:0;border-width:0 8px 8px;border-bottom-color:initial;transform-origin:center bottom}.tippy-box[data-placement^=left]>.tippy-arrow{right:0}.tippy-box[data-placement^=left]>.tippy-arrow:before{border-width:8px 0 8px 8px;border-left-color:initial;right:-7px;transform-origin:center left}.tippy-box[data-placement^=right]>.tippy-arrow{left:0}.tippy-box[data-placement^=right]>.tippy-arrow:before{left:-7px;border-width:8px 8px 8px 0;border-right-color:initial;transform-origin:center right}.tippy-box[data-inertia][data-state=visible]{transition-timing-function:cubic-bezier(.54,1.5,.38,1.11)}.tippy-arrow{width:16px;height:16px;color:#333}.tippy-arrow:before{content:"";position:absolute;border-color:transparent;border-style:solid}.tippy-content{position:relative;padding:5px 9px;z-index:1}.rg-celleditor-input,
|
|
9073
9082
|
.rg-celleditor input {
|
|
9074
9083
|
border: none;
|
|
9075
9084
|
}
|
|
@@ -9077,6 +9086,26 @@ button:not(:disabled):active {
|
|
|
9077
9086
|
width: 100%;
|
|
9078
9087
|
min-width: 170px;
|
|
9079
9088
|
}
|
|
9089
|
+
.tg-select.tg-select-as-tag .bp3-tag.bp3-minimal.bp3-intent-primary {
|
|
9090
|
+
color: white !important;
|
|
9091
|
+
}
|
|
9092
|
+
.tg-select.do-not-fill-width {
|
|
9093
|
+
width: auto;
|
|
9094
|
+
min-width: 50px;
|
|
9095
|
+
}
|
|
9096
|
+
.tg-select.tg-small .bp3-input {
|
|
9097
|
+
min-height: 25px;
|
|
9098
|
+
height: 25px;
|
|
9099
|
+
}
|
|
9100
|
+
.tg-select.tg-small input {
|
|
9101
|
+
line-height: 10.5px;
|
|
9102
|
+
}
|
|
9103
|
+
.tg-select.tg-small .bp3-tag-input .bp3-input-ghost {
|
|
9104
|
+
line-height: 10.5px;
|
|
9105
|
+
}
|
|
9106
|
+
.tg-select.tg-small .bp3-tag-input .bp3-tag-input-values {
|
|
9107
|
+
margin-top: 2px;
|
|
9108
|
+
}
|
|
9080
9109
|
.tg-select input {
|
|
9081
9110
|
font-size: 14px;
|
|
9082
9111
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export function addWrappedAddons(anns: any, seqLen: any): any[];
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
export default function calculateTickMarkPositionsForGivenRange({ tickSpacing: _tickSpacing, range, sequenceLength, isProtein, increaseOffset }: {
|
|
2
|
+
tickSpacing?: number | undefined;
|
|
3
|
+
range: any;
|
|
4
|
+
sequenceLength: any;
|
|
5
|
+
isProtein: any;
|
|
6
|
+
increaseOffset: any;
|
|
7
|
+
}): any[];
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function arrayToObjWithIds(array: any): {};
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function combineReducersDontIgnoreKeys(reducers: any): (state: {} | undefined, action: any) => {};
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export function oveCommandFactory(instance: any, commandDefs: any): {};
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
export function getSelectionMessage({ caretPosition, selectionLayer, customTitle, sequenceLength, sequenceData, showGCContent, GCDecimalDigits, isProtein }: {
|
|
2
|
+
caretPosition?: number | undefined;
|
|
3
|
+
selectionLayer?: {
|
|
4
|
+
start: number;
|
|
5
|
+
end: number;
|
|
6
|
+
} | undefined;
|
|
7
|
+
customTitle: any;
|
|
8
|
+
sequenceLength: any;
|
|
9
|
+
sequenceData: any;
|
|
10
|
+
showGCContent: any;
|
|
11
|
+
GCDecimalDigits: any;
|
|
12
|
+
isProtein: any;
|
|
13
|
+
}): string;
|
|
14
|
+
export function preventDefaultStopPropagation(e: any): void;
|
|
15
|
+
export function getNodeToRefocus(caretEl: any): any;
|
|
16
|
+
export function getEmptyText({ sequenceData, caretPosition }: {
|
|
17
|
+
sequenceData: any;
|
|
18
|
+
caretPosition: any;
|
|
19
|
+
}): import('../../../../node_modules/react/jsx-runtime').JSX.Element | null;
|
|
20
|
+
export function tryToRefocusEditor(): void;
|
|
21
|
+
export function getCustomEnzymes(): any;
|
|
22
|
+
export function addCustomEnzyme(newEnz: any): void;
|
|
23
|
+
export function pareDownAnnotations(annotations: any, max: any): any[];
|
|
24
|
+
export function getParedDownWarning({ nameUpper, maxToShow, isAdjustable }: {
|
|
25
|
+
nameUpper: any;
|
|
26
|
+
maxToShow: any;
|
|
27
|
+
isAdjustable: any;
|
|
28
|
+
}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
|
|
29
|
+
export function getClientX(event: any): any;
|
|
30
|
+
export function getClientY(event: any): any;
|
|
31
|
+
export function hideAnnByLengthFilter(hideOpts: any, ann: any, seqLen: any): any;
|
|
32
|
+
export function getSelFromWrappedAddon(selectionLayer: any, sequenceLength: any): any;
|
|
33
|
+
export function getStripedPattern({ color }: {
|
|
34
|
+
color: any;
|
|
35
|
+
}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
|
|
36
|
+
export function getEnzymeAliases(enzyme: any): any[];
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
export default function getAnnotationNameAndStartStopString({ name, start, end, type, message, annotationTypePlural, overlapsSelf, isWrappedAddon }: {
|
|
2
|
+
name: any;
|
|
3
|
+
start: any;
|
|
4
|
+
end: any;
|
|
5
|
+
type: any;
|
|
6
|
+
message: any;
|
|
7
|
+
annotationTypePlural: any;
|
|
8
|
+
overlapsSelf: any;
|
|
9
|
+
isWrappedAddon: any;
|
|
10
|
+
}, { startText, isProtein, readOnly }?: {
|
|
11
|
+
startText: any;
|
|
12
|
+
isProtein: any;
|
|
13
|
+
readOnly: any;
|
|
14
|
+
}): string;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export function massageTickSpacing(spacing: any): any;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export function divideBy3(num: any, shouldDivideBy3: any): any;
|
|
File without changes
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
export function LimitAnnotations({ type, ...rest }: {
|
|
2
|
+
[x: string]: any;
|
|
3
|
+
type: any;
|
|
4
|
+
}): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
|
|
5
|
+
export default useAnnotationLimits;
|
|
6
|
+
declare function useAnnotationLimits(): import("tg-use-local-storage-state").LocalStorageState<{
|
|
7
|
+
features: number;
|
|
8
|
+
parts: number;
|
|
9
|
+
primers: number;
|
|
10
|
+
warnings: number;
|
|
11
|
+
assemblyPieces: number;
|
|
12
|
+
lineageAnnotations: number;
|
|
13
|
+
cutsites: number;
|
|
14
|
+
}>;
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
export namespace chromatogramMenu {
|
|
2
|
+
let text: string;
|
|
3
|
+
let cmd: string;
|
|
4
|
+
function component(props: any): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
|
|
5
|
+
let shouldDismissPopover: boolean;
|
|
6
|
+
}
|
|
7
|
+
export function useShowChromQualScores(): import("tg-use-local-storage-state").LocalStorageState<boolean>;
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
export default Clipboard;
|
|
2
|
+
declare class Clipboard extends React.Component<any, any, any> {
|
|
3
|
+
static defaultProps: {
|
|
4
|
+
className: string;
|
|
5
|
+
};
|
|
6
|
+
constructor(props: any);
|
|
7
|
+
constructor(props: any, context: any);
|
|
8
|
+
componentDidMount(): void;
|
|
9
|
+
componentWillUnmount(): void;
|
|
10
|
+
handleKeyDown: (e: any) => void;
|
|
11
|
+
origFocusedElement: Element | null | undefined;
|
|
12
|
+
handleKeyUp: () => void;
|
|
13
|
+
render(): import('../../../../node_modules/react/jsx-runtime').JSX.Element;
|
|
14
|
+
node: HTMLInputElement | undefined;
|
|
15
|
+
}
|
|
16
|
+
import React from '../../../../node_modules/react';
|
|
@@ -0,0 +1,67 @@
|
|
|
1
|
+
export function handleCaretMoved({ moveBy, circular, sequenceLength, caretPosition, selectionLayer, shiftHeld, type, caretPositionUpdate, selectionLayerUpdate }: {
|
|
2
|
+
moveBy: any;
|
|
3
|
+
circular: any;
|
|
4
|
+
sequenceLength: any;
|
|
5
|
+
caretPosition: any;
|
|
6
|
+
selectionLayer: any;
|
|
7
|
+
shiftHeld: any;
|
|
8
|
+
type: any;
|
|
9
|
+
caretPositionUpdate: any;
|
|
10
|
+
selectionLayerUpdate: any;
|
|
11
|
+
}): any;
|
|
12
|
+
export function normalizeNewCaretPos(caretPosition: any, sequenceLength: any, circular: any): any;
|
|
13
|
+
export function handleSelectionStartGrabbed({ caretPosition, selectionLayer, selectionLayerUpdate, nearestCaretPos, sequenceLength, doNotWrapOrigin, caretPositionUpdate }: {
|
|
14
|
+
caretPosition: any;
|
|
15
|
+
selectionLayer: any;
|
|
16
|
+
selectionLayerUpdate: any;
|
|
17
|
+
nearestCaretPos: any;
|
|
18
|
+
sequenceLength: any;
|
|
19
|
+
doNotWrapOrigin: any;
|
|
20
|
+
caretPositionUpdate: any;
|
|
21
|
+
}): void;
|
|
22
|
+
export function handleSelectionEndGrabbed({ caretPosition, selectionLayer, selectionLayerUpdate, nearestCaretPos, sequenceLength, doNotWrapOrigin, caretPositionUpdate }: {
|
|
23
|
+
caretPosition: any;
|
|
24
|
+
selectionLayer: any;
|
|
25
|
+
selectionLayerUpdate: any;
|
|
26
|
+
nearestCaretPos: any;
|
|
27
|
+
sequenceLength: any;
|
|
28
|
+
doNotWrapOrigin: any;
|
|
29
|
+
caretPositionUpdate: any;
|
|
30
|
+
}): void;
|
|
31
|
+
export function handleNoSelectionLayerYet({ caretPosition, selectionLayerUpdate, nearestCaretPos, sequenceLength, doNotWrapOrigin }: {
|
|
32
|
+
caretPosition: any;
|
|
33
|
+
selectionLayerUpdate: any;
|
|
34
|
+
nearestCaretPos: any;
|
|
35
|
+
sequenceLength: any;
|
|
36
|
+
doNotWrapOrigin: any;
|
|
37
|
+
}): void;
|
|
38
|
+
export function updateSelectionOrCaret({ shiftHeld, sequenceLength, newRangeOrCaret, caretPosition, selectionLayer, selectionLayerUpdate, caretPositionUpdate, doNotWrapOrigin }: {
|
|
39
|
+
shiftHeld: any;
|
|
40
|
+
sequenceLength: any;
|
|
41
|
+
newRangeOrCaret: any;
|
|
42
|
+
caretPosition: any;
|
|
43
|
+
selectionLayer: any;
|
|
44
|
+
selectionLayerUpdate?: ((...args: any[]) => void) | undefined;
|
|
45
|
+
caretPositionUpdate?: ((...args: any[]) => void) | undefined;
|
|
46
|
+
doNotWrapOrigin: any;
|
|
47
|
+
}): void;
|
|
48
|
+
export function editorDragged({ nearestCaretPos, doNotWrapOrigin, caretPosition, easyStore, caretPositionUpdate, selectionLayerUpdate, selectionLayer, sequenceLength }: {
|
|
49
|
+
nearestCaretPos: any;
|
|
50
|
+
doNotWrapOrigin: any;
|
|
51
|
+
caretPosition?: number | undefined;
|
|
52
|
+
easyStore: any;
|
|
53
|
+
caretPositionUpdate?: ((...args: any[]) => void) | undefined;
|
|
54
|
+
selectionLayerUpdate?: ((...args: any[]) => void) | undefined;
|
|
55
|
+
selectionLayer?: {
|
|
56
|
+
start: number;
|
|
57
|
+
end: number;
|
|
58
|
+
} | undefined;
|
|
59
|
+
sequenceLength: any;
|
|
60
|
+
}): void;
|
|
61
|
+
export function editorClicked({ nearestCaretPos, shiftHeld, updateSelectionOrCaret }: {
|
|
62
|
+
nearestCaretPos: any;
|
|
63
|
+
shiftHeld: any;
|
|
64
|
+
updateSelectionOrCaret: any;
|
|
65
|
+
}): void;
|
|
66
|
+
export function editorDragStarted(opts: any): void;
|
|
67
|
+
export function editorDragStopped(): void;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
export default function createSequenceInputPopup(props: any): void;
|
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
export default function getBpsPerRow({ charWidth, width, dimensions: { width: width2 }, marginWidth, sequenceData }: {
|
|
2
|
+
charWidth?: number | undefined;
|
|
3
|
+
width?: number | undefined;
|
|
4
|
+
dimensions?: {
|
|
5
|
+
width: any;
|
|
6
|
+
} | undefined;
|
|
7
|
+
marginWidth?: number | undefined;
|
|
8
|
+
sequenceData: any;
|
|
9
|
+
}): number;
|
|
@@ -0,0 +1,10 @@
|
|
|
1
|
+
export default moveCaret;
|
|
2
|
+
declare function moveCaret({ sequenceLength, bpsPerRow, caretPosition, selectionLayer, shiftHeld, isProtein, type }: {
|
|
3
|
+
sequenceLength: any;
|
|
4
|
+
bpsPerRow: any;
|
|
5
|
+
caretPosition: any;
|
|
6
|
+
selectionLayer: any;
|
|
7
|
+
shiftHeld: any;
|
|
8
|
+
isProtein: any;
|
|
9
|
+
type: any;
|
|
10
|
+
}): any;
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
export function mapDispatchToActions(dispatch: any, ownProps: any): {
|
|
2
|
+
selectionLayerUpdate: any;
|
|
3
|
+
caretPositionUpdate: any;
|
|
4
|
+
dispatch: any;
|
|
5
|
+
};
|
|
6
|
+
export function fakeActionOverrides(): {};
|
|
7
|
+
export function getCombinedActions(editorName: any, actions: any, actionOverrides: any, dispatch: any): {};
|
|
8
|
+
export function getShowGCContent(state: any, ownProps: any): any;
|
|
9
|
+
export function handleSave(props: any): (opts?: {}) => Promise<any>;
|
|
10
|
+
export function handleInverse(props: any): () => false | undefined;
|
|
11
|
+
export function updateCircular(props: any): (isCircular: any) => Promise<void>;
|
|
12
|
+
export function importSequenceFromFile(props: any): (file: any, opts?: {}) => Promise<void>;
|
|
13
|
+
export function exportSequenceToFile(props: any): (format: any, options: any) => void;
|
|
14
|
+
declare const _default: any;
|
|
15
|
+
export default _default;
|
|
16
|
+
export function connectToEditor(fn: any): import('../../../../node_modules/react-redux').InferableComponentEnhancerWithProps<any, any>;
|
|
17
|
+
export const withEditorPropsNoRedux: any;
|