@teselagen/ove 0.3.49 → 0.3.51

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@teselagen/ove",
-  "version": "0.3.49",
+  "version": "0.3.51",
   "main": "./src/index.js",
   "exports": {
     ".": {
@@ -13,12 +13,12 @@
     "node": "16.20.2"
   },
   "dependencies": {
-    "@teselagen/sequence-utils": "0.3.10",
+    "@teselagen/sequence-utils": "0.3.12",
     "@teselagen/range-utils": "0.3.7",
-    "@teselagen/ui": "0.3.37",
+    "@teselagen/ui": "0.3.38",
     "@teselagen/file-utils": "0.3.9",
     "@teselagen/bounce-loader": "0.3.11",
-    "@teselagen/bio-parsers": "0.4.2",
+    "@teselagen/bio-parsers": "0.4.5",
     "@blueprintjs/core": "3.52.0",
     "@blueprintjs/datetime": "3.23.19",
     "@blueprintjs/icons": "3.33.0",

package/src/redux/alignments.js

@@ -79,7 +79,9 @@ function addHighlightedDifferences(alignmentTracks) {
     if (track.isUnmapped) {
       return track;
     }
-    const sequenceData = tidyUpSequenceData(track.sequenceData);
+    const sequenceData = tidyUpSequenceData(track.sequenceData, {
+      doNotRemoveInvalidChars: true
+    });
     const matchHighlightRanges = getRangeMatchesBetweenTemplateAndNonTemplate(
       alignmentTracks[0].alignmentData.sequence,
       track.alignmentData.sequence
@@ -179,7 +181,9 @@ export default (state = {}, { payload = {}, type }) => {
         {
           //add the template seq as the first track in the Pairwise Alignment Overview
           ...templateSeq,
-          sequenceData: tidyUpSequenceData(templateSeq.sequenceData),
+          sequenceData: tidyUpSequenceData(templateSeq.sequenceData, {
+            doNotRemoveInvalidChars: true
+          }),
           alignmentData: { sequence: templateSeq.sequenceData.sequence } //remove the gaps from the template sequence
         }
       ]; // start with just the template seq in there!
@@ -213,7 +217,9 @@ export default (state = {}, { payload = {}, type }) => {
         const alignedSeqMinusInserts = {
           ...alignedSeq,
           sequenceData: {
-            ...tidyUpSequenceData(alignedSeq.sequenceData),
+            ...tidyUpSequenceData(alignedSeq.sequenceData, {
+              doNotRemoveInvalidChars: true
+            }),
             sequence: template.sequenceData.sequence
           },
           additionalSelectionLayers,

package/src/withEditorInteractions/index.js

@@ -283,7 +283,7 @@ function VectorInteractionHOC(Component /* options */) {
               }
             }
           ),
-        { annotationsAsObjects: true }
+        { doNotRemoveInvalidChars: true, annotationsAsObjects: true }
       );
 
       if (
@@ -314,7 +314,7 @@ function VectorInteractionHOC(Component /* options */) {
         this.handleDnaDelete(false);
         onCut(
           e,
-          tidyUpSequenceData(seqData, { annotationsAsObjects: true }),
+          tidyUpSequenceData(seqData, { doNotRemoveInvalidChars: true,annotationsAsObjects: true }),
           this.props
         );
         document.body.removeEventListener("cut", this.handleCut);

package/src/withEditorProps/index.js

@@ -160,7 +160,7 @@ export const handleSave =
       saveHandler &&
       saveHandler(
         opts,
-        tidyUpSequenceData(sequenceData, { annotationsAsObjects: true }),
+        tidyUpSequenceData(sequenceData, { doNotRemoveInvalidChars: true,annotationsAsObjects: true }),
         props,
         updateLastSavedIdToCurrent
       );
@@ -869,7 +869,7 @@ function jsonToJson(incomingJson) {
   return JSON.stringify(
     omit(
       cleanUpTeselagenJsonForExport(
-        tidyUpSequenceData(incomingJson, { annotationsAsObjects: false })
+        tidyUpSequenceData(incomingJson, { doNotRemoveInvalidChars: true,annotationsAsObjects: false })
       ),
       [
         "sequenceFragments",

package/style.css

@@ -9594,7 +9594,7 @@ body:not(.drag-active)
 }
 .rt-td.isEditingCell.isDropdownCell {
   padding: 0;
-  max-height: 24px;
+  /* max-height: 24px; */
 }
 
 .tg-dropdown-cell-edit-container .bp3-tag-input .bp3-button {