@teselagen/ove 0.0.13 → 0.0.15
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.umd.js +164751 -135808
- package/package.json +78 -2
- package/src/AlignmentTool/index.js +16 -0
- package/src/AlignmentView/AlignmentVisibilityTool.js +105 -0
- package/src/AlignmentView/EditTrackNameDialog.js +34 -0
- package/src/AlignmentView/HorizontalPanelDragHandle.js +35 -0
- package/src/AlignmentView/Minimap.js +520 -0
- package/src/AlignmentView/Mismatches.js +134 -0
- package/src/AlignmentView/PairwiseAlignmentView.js +68 -0
- package/src/AlignmentView/PerformantSelectionLayer.js +32 -0
- package/src/AlignmentView/coerceInitialValue.js +7 -0
- package/src/AlignmentView/getGapMap.js +12 -0
- package/src/AlignmentView/getGaps.js +27 -0
- package/src/AlignmentView/getPairwiseOverviewLinearViewOptions.js +38 -0
- package/src/AlignmentView/getTrackFromEvent.js +25 -0
- package/src/AlignmentView/index.js +2058 -0
- package/src/AlignmentView/isTargetWithinEl.js +6 -0
- package/src/AlignmentView/style.css +100 -0
- package/src/AlignmentView/updateTrackHelper.js +58 -0
- package/src/AutoAnnotate.js +500 -0
- package/src/AutoAnnotateBpMatchingDialog.js +208 -0
- package/src/CircularView/Axis.js +40 -0
- package/src/CircularView/AxisNumbers.js +35 -0
- package/src/CircularView/Caret.js +63 -0
- package/src/CircularView/CircularDnaSequence.js +73 -0
- package/src/CircularView/CircularZoomMinimap.js +16 -0
- package/src/CircularView/Cutsite.js +18 -0
- package/src/CircularView/Cutsites.js +113 -0
- package/src/CircularView/DeletionLayer.js +28 -0
- package/src/CircularView/Feature.js +83 -0
- package/src/CircularView/Labels/index.js +536 -0
- package/src/CircularView/Labels/relaxLabelAngles.js +157 -0
- package/src/CircularView/Labels/relaxLabels_DEPRECATED.js +105 -0
- package/src/CircularView/Labels/style.css +55 -0
- package/src/CircularView/Orf.js +25 -0
- package/src/CircularView/Part.js +34 -0
- package/src/CircularView/PositionAnnotationOnCircle.js +26 -0
- package/src/CircularView/Primer.js +41 -0
- package/src/CircularView/RotateCircularViewSlider.js +82 -0
- package/src/CircularView/SelectionLayer.js +132 -0
- package/src/CircularView/VeTopRightContainer.js +12 -0
- package/src/CircularView/ZoomCircularViewSlider.js +62 -0
- package/src/CircularView/drawAnnotations.js +433 -0
- package/src/CircularView/drawDirectedPiePiece.js +142 -0
- package/src/CircularView/getAngleForPositionMidpoint.js +3 -0
- package/src/CircularView/getInternalLabel.js +40 -0
- package/src/CircularView/getRangeAnglesSpecial.js +12 -0
- package/src/CircularView/getYOffset.js +15 -0
- package/src/CircularView/index.d.ts +20 -0
- package/src/CircularView/index.js +930 -0
- package/src/CircularView/normalizeAngle.js +3 -0
- package/src/CircularView/normalizeAngleRange.js +9 -0
- package/src/CircularView/positionCutsites.js +6 -0
- package/src/CircularView/shouldFlipText.js +4 -0
- package/src/CircularView/style.css +47 -0
- package/src/CircularView/utils/polarToSpecialCartesian.js +7 -0
- package/src/CreateAnnotationsPage.js +96 -0
- package/src/CreateCustomEnzyme/index.js +337 -0
- package/src/CreateCustomEnzyme/style.css +100 -0
- package/src/CutsiteFilter/AdditionalCutsiteInfoDialog.js +599 -0
- package/src/CutsiteFilter/index.js +408 -0
- package/src/CutsiteFilter/style.css +23 -0
- package/src/CutsiteFilter/withRestrictionEnzymes.js +15 -0
- package/src/DigestTool/AddLaddersDialog.js +82 -0
- package/src/DigestTool/DigestTool.js +223 -0
- package/src/DigestTool/Ladder.css +20 -0
- package/src/DigestTool/Ladder.js +303 -0
- package/src/DigestTool/createFragmentLines.js +120 -0
- package/src/DigestTool/ladderDefaults.js +26 -0
- package/src/DigestTool/ruler.css +89 -0
- package/src/Editor/CommandHotkeyHandler.js +44 -0
- package/src/Editor/DropHandler.css +21 -0
- package/src/Editor/DropHandler.js +64 -0
- package/src/Editor/FillWindow.js +46 -0
- package/src/Editor/darkmode.css +98 -0
- package/src/Editor/index.js +1005 -0
- package/src/Editor/style.css +235 -0
- package/src/Editor/userDefinedHandlersAndOpts.js +56 -0
- package/src/EnzymeViewer/index.js +81 -0
- package/src/EnzymeViewer/style.css +6 -0
- package/src/FindBar/index.js +411 -0
- package/src/FindBar/style.css +46 -0
- package/src/GlobalDialog.js +66 -0
- package/src/GlobalDialogUtils.js +85 -0
- package/src/LinearView/SequenceName.js +15 -0
- package/src/LinearView/ZoomLinearView.js +47 -0
- package/src/LinearView/index.js +374 -0
- package/src/LinearView/style.css +12 -0
- package/src/ManageEnzymes/index.js +326 -0
- package/src/ManageEnzymes/style.css +100 -0
- package/src/MenuBar/defaultConfig.js +149 -0
- package/src/MenuBar/index.js +98 -0
- package/src/MenuBar/viewSubmenu.js +479 -0
- package/src/PCRTool/PCRTool.js +173 -0
- package/src/Reflex/Browser.js +107 -0
- package/src/Reflex/ReflexContainer.js +802 -0
- package/src/Reflex/ReflexElement.js +160 -0
- package/src/Reflex/ReflexEvents.js +77 -0
- package/src/Reflex/ReflexSplitter.js +205 -0
- package/src/Reflex/index.js +5 -0
- package/src/Reflex/reflex-styles.css +128 -0
- package/src/Reflex/reflex-styles.css.map +9 -0
- package/src/RowItem/AnnotationContainerHolder.js +20 -0
- package/src/RowItem/AnnotationPositioner.js +27 -0
- package/src/RowItem/Axis.js +149 -0
- package/src/RowItem/Caret/index.js +64 -0
- package/src/RowItem/Caret/style.css +8 -0
- package/src/RowItem/Chromatograms/Chromatogram.js +289 -0
- package/src/RowItem/CutsiteSelectionLayers.js +47 -0
- package/src/RowItem/Cutsites.js +271 -0
- package/src/RowItem/DeletionLayers/index.js +113 -0
- package/src/RowItem/DeletionLayers/style.css +5 -0
- package/src/RowItem/Labels.js +327 -0
- package/src/RowItem/Orf.js +109 -0
- package/src/RowItem/Orfs.js +35 -0
- package/src/RowItem/ReplacementLayers/style.css +5 -0
- package/src/RowItem/SelectionLayer/index.js +184 -0
- package/src/RowItem/SelectionLayer/style.css +21 -0
- package/src/RowItem/Sequence.js +269 -0
- package/src/RowItem/StackedAnnotations/PointedAnnotation.js +347 -0
- package/src/RowItem/StackedAnnotations/getStructuredBases.js +97 -0
- package/src/RowItem/StackedAnnotations/index.js +182 -0
- package/src/RowItem/StackedAnnotations/primerBases.js +218 -0
- package/src/RowItem/StackedAnnotations/style.css +14 -0
- package/src/RowItem/Translations/AASliver.js +190 -0
- package/src/RowItem/Translations/Translation.js +162 -0
- package/src/RowItem/Translations/index.js +54 -0
- package/src/RowItem/Translations/style.css +3 -0
- package/src/RowItem/constants.js +3 -0
- package/src/RowItem/getCutsiteLabelHeights.js +56 -0
- package/src/RowItem/getXStartAndWidthFromNonCircularRange.js +12 -0
- package/src/RowItem/getXStartAndWidthOfRangeWrtRow.js +27 -0
- package/src/RowItem/getXStartAndWidthOfRowAnnotation.js +19 -0
- package/src/RowItem/index.js +647 -0
- package/src/RowItem/partOverhangs.js +6 -0
- package/src/RowItem/style.css +103 -0
- package/src/RowItem/utils.js +32 -0
- package/src/RowView/estimateRowHeight.js +184 -0
- package/src/RowView/index.d.ts +10 -0
- package/src/RowView/index.js +554 -0
- package/src/RowView/style.css +12 -0
- package/src/SimpleCircularOrLinearView.js +379 -0
- package/src/SimpleOligoPreview.js +39 -0
- package/src/StatusBar/MeltingTemp.js +81 -0
- package/src/StatusBar/index.js +275 -0
- package/src/StatusBar/style.css +38 -0
- package/src/ToolBar/ToolbarItem.js +194 -0
- package/src/ToolBar/alignmentTool.js +503 -0
- package/src/ToolBar/array_move.js +10 -0
- package/src/ToolBar/cutsiteTool.js +88 -0
- package/src/ToolBar/downloadTool.js +38 -0
- package/src/ToolBar/editTool.js +26 -0
- package/src/ToolBar/featureTool.js +34 -0
- package/src/ToolBar/findTool.js +2 -0
- package/src/ToolBar/importTool.js +27 -0
- package/src/ToolBar/index.js +231 -0
- package/src/ToolBar/inlineFindTool.js +38 -0
- package/src/ToolBar/oligoTool.js +30 -0
- package/src/ToolBar/orfTool.js +141 -0
- package/src/ToolBar/partTool.js +47 -0
- package/src/ToolBar/printTool.js +31 -0
- package/src/ToolBar/redoTool.js +30 -0
- package/src/ToolBar/saveTool.js +48 -0
- package/src/ToolBar/style.css +138 -0
- package/src/ToolBar/undoTool.js +30 -0
- package/src/ToolBar/veToolbarIcons/find.png +0 -0
- package/src/ToolBar/veToolbarIcons/fullscreen.png +0 -0
- package/src/ToolBar/veToolbarIcons/linear.png +0 -0
- package/src/ToolBar/veToolbarIcons/pie.png +0 -0
- package/src/ToolBar/veToolbarIcons/print.png +0 -0
- package/src/ToolBar/veToolbarIcons/save.png +0 -0
- package/src/ToolBar/veToolbarIcons/show_cut_sites.png +0 -0
- package/src/ToolBar/veToolbarIcons/show_features.png +0 -0
- package/src/ToolBar/veToolbarIcons/show_orfs.png +0 -0
- package/src/ToolBar/veToolbarIcons/show_primers.png +0 -0
- package/src/ToolBar/veToolbarIcons/toggle_views.svg +1 -0
- package/src/ToolBar/versionHistoryTool.js +20 -0
- package/src/ToolBar/visibilityTool.js +39 -0
- package/src/VersionHistoryView/index.js +215 -0
- package/src/addAlignment.js +6 -0
- package/src/commands/getOveHotkeyDefs.js +12 -0
- package/src/commands/index.js +1585 -0
- package/src/constants/constants.js +2 -0
- package/src/constants/dnaToColor.js +17 -0
- package/src/constants/draggableClassnames.js +5 -0
- package/src/constants/findToolConstants.js +1 -0
- package/src/constants/orfFrameToColorMap.js +10 -0
- package/src/constants/rowviewContants.js +3 -0
- package/src/constants/specialCutsiteFilterOptions.js +22 -0
- package/src/constants.js +1 -0
- package/src/createVectorEditor/index.js +138 -0
- package/src/createVectorEditor/makeStore.js +34 -0
- package/src/fileUtils.js +103 -0
- package/src/helperComponents/AddOrEditAnnotationDialog/index.js +711 -0
- package/src/helperComponents/AddOrEditAnnotationDialog/style.css +11 -0
- package/src/helperComponents/AddOrEditFeatureDialog/index.js +58 -0
- package/src/helperComponents/AddOrEditPartDialog/index.js +101 -0
- package/src/helperComponents/AddOrEditPrimerDialog/EditCaretPosition.js +234 -0
- package/src/helperComponents/AddOrEditPrimerDialog/index.js +329 -0
- package/src/helperComponents/AddOrEditPrimerDialog/style.css +41 -0
- package/src/helperComponents/EnzymesDialog/index.js +904 -0
- package/src/helperComponents/EnzymesDialog/style.css +21 -0
- package/src/helperComponents/GoToDialog.js +21 -0
- package/src/helperComponents/MergeFeaturesDialog/index.js +253 -0
- package/src/helperComponents/MergeFeaturesDialog/style.css +3 -0
- package/src/helperComponents/MultipleSeqsDetectedOnImportDialog.js +74 -0
- package/src/helperComponents/PinchHelper/PinchHelper.js +24 -0
- package/src/helperComponents/PrintDialog/index.js +396 -0
- package/src/helperComponents/PrintDialog/style.css +4 -0
- package/src/helperComponents/PropertiesDialog/ColorPicker.js +30 -0
- package/src/helperComponents/PropertiesDialog/CutsiteProperties.js +185 -0
- package/src/helperComponents/PropertiesDialog/FeatureProperties.js +6 -0
- package/src/helperComponents/PropertiesDialog/GenbankView.js +74 -0
- package/src/helperComponents/PropertiesDialog/GeneralProperties.js +140 -0
- package/src/helperComponents/PropertiesDialog/GenericAnnotationProperties.js +406 -0
- package/src/helperComponents/PropertiesDialog/OrfProperties.js +117 -0
- package/src/helperComponents/PropertiesDialog/PartProperties.js +9 -0
- package/src/helperComponents/PropertiesDialog/PrimerProperties.js +19 -0
- package/src/helperComponents/PropertiesDialog/SingleEnzymeCutsiteInfo.js +131 -0
- package/src/helperComponents/PropertiesDialog/TranslationProperties.js +149 -0
- package/src/helperComponents/PropertiesDialog/index.js +166 -0
- package/src/helperComponents/PropertiesDialog/style.css +68 -0
- package/src/helperComponents/PropertiesDialog/typeField.js +24 -0
- package/src/helperComponents/PropertiesDialog/utils.js +37 -0
- package/src/helperComponents/RemoveDuplicates/index.js +194 -0
- package/src/helperComponents/RenameSequenceDialog.js +7 -0
- package/src/helperComponents/SelectDialog.js +150 -0
- package/src/helperComponents/UncontrolledSliderWithPlusMinusBtns.css +5 -0
- package/src/helperComponents/UncontrolledSliderWithPlusMinusBtns.js +134 -0
- package/src/helperComponents/VeWarning/index.js +22 -0
- package/src/helperComponents/VeWarning/style.css +10 -0
- package/src/helperComponents/createSimpleDialog.js +89 -0
- package/src/helperComponents/partTagSearch.js +72 -0
- package/src/helperComponents/simpleDialog.css +13 -0
- package/src/helperComponents/withHover.js +90 -0
- package/src/index.js +60 -0
- package/src/redux/alignments.js +373 -0
- package/src/redux/annotationLabelVisibility.js +53 -0
- package/src/redux/annotationVisibility.js +196 -0
- package/src/redux/annotationsToSupport.js +104 -0
- package/src/redux/caretPosition.js +27 -0
- package/src/redux/charWidth.js +22 -0
- package/src/redux/copyOptions.js +34 -0
- package/src/redux/createYourOwnEnzyme.js +39 -0
- package/src/redux/deletionLayers.js +36 -0
- package/src/redux/digestTool.js +34 -0
- package/src/redux/featureLengthsToHide.js +27 -0
- package/src/redux/findTool.js +79 -0
- package/src/redux/frameTranslations.js +52 -0
- package/src/redux/hoveredAnnotation.js +24 -0
- package/src/redux/index.js +196 -0
- package/src/redux/labelLineIntensity.js +25 -0
- package/src/redux/labelSize.js +23 -0
- package/src/redux/lastSavedId.js +20 -0
- package/src/redux/middleware.js +112 -0
- package/src/redux/minimumOrfSize.js +24 -0
- package/src/redux/modalActions.js +3 -0
- package/src/redux/panelsShown.js +273 -0
- package/src/redux/partLengthsToHide.js +23 -0
- package/src/redux/primerLengthsToHide.js +27 -0
- package/src/redux/propertiesTool.js +40 -0
- package/src/redux/readOnly.js +28 -0
- package/src/redux/replacementLayers.js +36 -0
- package/src/redux/restrictionEnzymes.js +52 -0
- package/src/redux/selectedAnnotations.js +89 -0
- package/src/redux/selectedPartTags.js +21 -0
- package/src/redux/selectionLayer.js +46 -0
- package/src/redux/sequenceData/circular.js +19 -0
- package/src/redux/sequenceData/description.js +21 -0
- package/src/redux/sequenceData/features.js +19 -0
- package/src/redux/sequenceData/index.js +81 -0
- package/src/redux/sequenceData/lineageLines.js +11 -0
- package/src/redux/sequenceData/materiallyAvailable.js +19 -0
- package/src/redux/sequenceData/name.js +19 -0
- package/src/redux/sequenceData/parts.js +19 -0
- package/src/redux/sequenceData/primers.js +19 -0
- package/src/redux/sequenceData/sequence.js +12 -0
- package/src/redux/sequenceData/sharedActionCreators.js +0 -0
- package/src/redux/sequenceData/translations.js +20 -0
- package/src/redux/sequenceData/upsertDeleteActionGenerator.js +31 -0
- package/src/redux/sequenceDataHistory.js +43 -0
- package/src/redux/showGCContent.js +23 -0
- package/src/redux/toolBar.js +25 -0
- package/src/redux/uppercaseSequenceMapFont.js +25 -0
- package/src/redux/useAdditionalOrfStartCodons.js +24 -0
- package/src/redux/utils/addDashesForMatchStartAndEndForTracks/index.js +71 -0
- package/src/redux/utils/addMetaToActionCreators.js +12 -0
- package/src/redux/utils/createMergedDefaultStateReducer.js +30 -0
- package/src/redux/utils/createMetaAction.js +12 -0
- package/src/redux/versionHistory.js +27 -0
- package/src/selectors/annotationLabelVisibility.js +2 -0
- package/src/selectors/annotationSearchSelector.js +24 -0
- package/src/selectors/cdsFeaturesSelector.js +9 -0
- package/src/selectors/circularSelector.js +4 -0
- package/src/selectors/cutsiteLabelColorSelector.js +6 -0
- package/src/selectors/cutsitesByRangeSelector.js +5 -0
- package/src/selectors/cutsitesSelector.js +61 -0
- package/src/selectors/editorSelector.js +2 -0
- package/src/selectors/featuresSelector.js +8 -0
- package/src/selectors/filteredCutsitesSelector.js +137 -0
- package/src/selectors/filteredFeaturesSelector.js +32 -0
- package/src/selectors/filteredPartsSelector.js +57 -0
- package/src/selectors/filteredPrimersSelector.js +27 -0
- package/src/selectors/filteredRestrictionEnzymesSelector.js +1 -0
- package/src/selectors/getAdditionalEnzymesSelector.js +46 -0
- package/src/selectors/index.js +41 -0
- package/src/selectors/isEnzymeFilterAndSelector.js +1 -0
- package/src/selectors/minimumOrfSizeSelector.js +2 -0
- package/src/selectors/orfsSelector.js +15 -0
- package/src/selectors/partsSelector.js +8 -0
- package/src/selectors/primersSelector.js +8 -0
- package/src/selectors/restrictionEnzymesSelector.js +34 -0
- package/src/selectors/searchLayersSelector.js +71 -0
- package/src/selectors/selectedAnnotationsSelector.js +1 -0
- package/src/selectors/selectedCutsitesSelector.js +21 -0
- package/src/selectors/sequenceDataSelector.js +2 -0
- package/src/selectors/sequenceLengthSelector.js +5 -0
- package/src/selectors/sequenceSelector.js +4 -0
- package/src/selectors/tagsToBoldSelector.js +2 -0
- package/src/selectors/translationSearchMatchesSelector.js +14 -0
- package/src/selectors/translationsRawSelector.js +8 -0
- package/src/selectors/translationsSelector.js +137 -0
- package/src/style.css +82 -0
- package/src/updateEditor.js +198 -0
- package/src/utils/PassThrough.js +3 -0
- package/src/utils/addWrappedAddons.js +20 -0
- package/src/utils/annotationTypes.js +37 -0
- package/src/utils/arrayUtils.js +19 -0
- package/src/utils/calculateTickMarkPositionsForGivenRange.js +47 -0
- package/src/utils/cleanSequenceData_DEPRECATED/arrayToObjWithIds.js +17 -0
- package/src/utils/combineReducersDontIgnoreKeys.js +12 -0
- package/src/utils/commandUtils.js +18 -0
- package/src/utils/editorUtils.js +223 -0
- package/src/utils/getAnnotationClassnames.js +12 -0
- package/src/utils/getAnnotationNameAndStartStopString.js +61 -0
- package/src/utils/getVisibleStartEnd.js +7 -0
- package/src/utils/massageTickSpacing.js +19 -0
- package/src/utils/onlyUpdateForKeysDeep.js +31 -0
- package/src/utils/prepareRowData.js +64 -0
- package/src/utils/proteinUtils.js +3 -0
- package/src/utils/pureNoFunc.js +18 -0
- package/src/utils/selectionLayer.js +25 -0
- package/src/utils/shouldRerender.js +27 -0
- package/src/utils/showFileDialog.js +26 -0
- package/src/utils/updateLabelsForInViewFeatures.js +55 -0
- package/src/utils/updateLabelsForInViewFeaturesCircView.js +41 -0
- package/src/utils/useAAColorType.js +8 -0
- package/src/utils/useAnnotationLimits.js +42 -0
- package/src/utils/useChromatogramPrefs.js +31 -0
- package/src/utils/useLadders.js +6 -0
- package/src/utils/useMeltingTemp.js +7 -0
- package/src/utils/useTmType.js +10 -0
- package/src/withEditorInteractions/Keyboard.js +86 -0
- package/src/withEditorInteractions/clickAndDragUtils.js +576 -0
- package/src/withEditorInteractions/createSequenceInputPopup.js +296 -0
- package/src/withEditorInteractions/createSequenceInputPopupStyle.css +85 -0
- package/src/withEditorInteractions/getBpsPerRow.js +19 -0
- package/src/withEditorInteractions/index.js +1252 -0
- package/src/withEditorInteractions/isElementInViewport.js +29 -0
- package/src/withEditorInteractions/moveCaret.js +58 -0
- package/src/withEditorProps/index.js +1010 -0
- package/index.mjs +0 -193201
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const upsertLocalEnzymeGroups = (newGroups) => {
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|
39
|
+
const existingGroups = window.getExistingEnzymeGroups();
|
|
40
|
+
const toUpsert = omitBy(
|
|
41
|
+
//delete any groups that have a value of null/undefined
|
|
42
|
+
{
|
|
43
|
+
...existingGroups,
|
|
44
|
+
...newGroups
|
|
45
|
+
},
|
|
46
|
+
(val) => {
|
|
47
|
+
return !val;
|
|
48
|
+
}
|
|
49
|
+
);
|
|
50
|
+
|
|
51
|
+
localStorage.setItem("enzymeGroups", JSON.stringify(toUpsert));
|
|
52
|
+
};
|
|
53
|
+
|
|
54
|
+
window.createNewEnzymeGroup =
|
|
55
|
+
window.createNewEnzymeGroup ||
|
|
56
|
+
((newName) => {
|
|
57
|
+
return upsertLocalEnzymeGroups({
|
|
58
|
+
[newName]: []
|
|
59
|
+
});
|
|
60
|
+
});
|
|
61
|
+
window.editEnzymeGroupName =
|
|
62
|
+
window.editEnzymeGroupName ||
|
|
63
|
+
((oldName, newName) => {
|
|
64
|
+
upsertLocalEnzymeGroups({
|
|
65
|
+
[newName]: window.getExistingEnzymeGroups()[oldName]
|
|
66
|
+
});
|
|
67
|
+
window.deleteEnzymeGroup(oldName);
|
|
68
|
+
});
|
|
69
|
+
window.deleteEnzymeGroup =
|
|
70
|
+
window.deleteEnzymeGroup ||
|
|
71
|
+
((nameToDelete) => {
|
|
72
|
+
return upsertLocalEnzymeGroups({
|
|
73
|
+
[nameToDelete]: null
|
|
74
|
+
});
|
|
75
|
+
});
|
|
76
|
+
|
|
77
|
+
window.updateEnzymeGroup =
|
|
78
|
+
window.updateEnzymeGroup ||
|
|
79
|
+
((groupName, enzymes) => {
|
|
80
|
+
return upsertLocalEnzymeGroups({
|
|
81
|
+
[groupName]: enzymes
|
|
82
|
+
});
|
|
83
|
+
});
|
|
84
|
+
|
|
85
|
+
window.getExistingEnzymeGroups =
|
|
86
|
+
window.getExistingEnzymeGroups ||
|
|
87
|
+
(() => {
|
|
88
|
+
const existingGroups = JSON.parse(
|
|
89
|
+
localStorage.getItem("enzymeGroups") || "{}"
|
|
90
|
+
);
|
|
91
|
+
if (!Object.keys(existingGroups || {}).length) {
|
|
92
|
+
return {};
|
|
93
|
+
}
|
|
94
|
+
map(existingGroups, (g, k) => {
|
|
95
|
+
if (!g || !g.length) existingGroups[k] = [];
|
|
96
|
+
});
|
|
97
|
+
return existingGroups;
|
|
98
|
+
});
|
|
99
|
+
|
|
100
|
+
// window.getExistingEnzymeGroupsWithEnzymeData = () => {
|
|
101
|
+
// const toRet = {};
|
|
102
|
+
// forEach(window.getExistingEnzymeGroups(), (group, name) => {
|
|
103
|
+
// toRet[name] = flatMap(group, enzymeName => {
|
|
104
|
+
// const enzyme = this.getAllEnzymesByName()[enzymeName.toLowerCase()];
|
|
105
|
+
// if (!enzyme) {
|
|
106
|
+
// console.warn("ruh roh");
|
|
107
|
+
// return [];
|
|
108
|
+
// } else {
|
|
109
|
+
// return enzyme;
|
|
110
|
+
// }
|
|
111
|
+
// });
|
|
112
|
+
// });
|
|
113
|
+
// return toRet;
|
|
114
|
+
// };
|
|
115
|
+
|
|
116
|
+
const easyStore = store({ hoveredEnzyme: "" });
|
|
117
|
+
class EnzymesDialog extends React.Component {
|
|
118
|
+
state = {
|
|
119
|
+
selectedEnzymeGroup: "My Enzymes",
|
|
120
|
+
searchInput: ""
|
|
121
|
+
};
|
|
122
|
+
componentDidMount() {
|
|
123
|
+
this.refreshEnzymeGroups();
|
|
124
|
+
}
|
|
125
|
+
getAllEnzymesByName = () => {
|
|
126
|
+
return {
|
|
127
|
+
...this.props.additionalEnzymes,
|
|
128
|
+
...aliasedEnzymesByName
|
|
129
|
+
};
|
|
130
|
+
};
|
|
131
|
+
refreshEnzymeGroups = () => {
|
|
132
|
+
const { sequenceData, additionalEnzymes } = this.props;
|
|
133
|
+
const existingGroups = window.getExistingEnzymeGroups();
|
|
134
|
+
const orderedExistingGroups = {};
|
|
135
|
+
const groupedEnzymesNameMap = {};
|
|
136
|
+
Object.keys(existingGroups)
|
|
137
|
+
.sort()
|
|
138
|
+
.forEach(function (key) {
|
|
139
|
+
const group = existingGroups[key];
|
|
140
|
+
orderedExistingGroups[key] = group;
|
|
141
|
+
group.forEach((name) => {
|
|
142
|
+
const lowerName = name.toLowerCase();
|
|
143
|
+
groupedEnzymesNameMap[lowerName] =
|
|
144
|
+
aliasedEnzymesByName[lowerName] || additionalEnzymes[lowerName];
|
|
145
|
+
});
|
|
146
|
+
});
|
|
147
|
+
const myEnzymes = {
|
|
148
|
+
...groupedEnzymesNameMap,
|
|
149
|
+
...additionalEnzymes,
|
|
150
|
+
...defaultEnzymesByName
|
|
151
|
+
};
|
|
152
|
+
const hiddenEnzymes = omitBy(aliasedEnzymesByName, (p, i) => {
|
|
153
|
+
return myEnzymes[i] || groupedEnzymesNameMap[i];
|
|
154
|
+
});
|
|
155
|
+
this.enzymeGroups = {
|
|
156
|
+
"My Enzymes": {
|
|
157
|
+
protected: true,
|
|
158
|
+
name: "My Enzymes",
|
|
159
|
+
enzymes: map(myEnzymes).sort((e) => e.name)
|
|
160
|
+
},
|
|
161
|
+
Hidden: {
|
|
162
|
+
protected: true,
|
|
163
|
+
name: "Hidden",
|
|
164
|
+
tooltipInfo:
|
|
165
|
+
"These less common enzymes are hidden by default. Adding them to a custom group will make them show up in the cutsite filter dropdown.",
|
|
166
|
+
enzymes: map(hiddenEnzymes).sort((e) => e.name)
|
|
167
|
+
},
|
|
168
|
+
...reduce(
|
|
169
|
+
orderedExistingGroups,
|
|
170
|
+
(acc, val, key) => {
|
|
171
|
+
acc[key] = {
|
|
172
|
+
name: key,
|
|
173
|
+
enzymes: getEnzymesForNames(val, this.getAllEnzymesByName())
|
|
174
|
+
};
|
|
175
|
+
return acc;
|
|
176
|
+
},
|
|
177
|
+
{}
|
|
178
|
+
)
|
|
179
|
+
|
|
180
|
+
// "my special enzymes": {
|
|
181
|
+
// name: "my special enzymes",
|
|
182
|
+
// enzymes: getEnzymesForNames(["bamhi", "bsmbi"])
|
|
183
|
+
// },
|
|
184
|
+
|
|
185
|
+
// "my casual enzymes": {
|
|
186
|
+
// name: "my casual enzymes",
|
|
187
|
+
// enzymes: getEnzymesForNames(["bamhi", "bsmbi"])
|
|
188
|
+
// }
|
|
189
|
+
};
|
|
190
|
+
this.cutsitesByEnzymeName = getCutsitesFromSequence(
|
|
191
|
+
sequenceData.sequence,
|
|
192
|
+
sequenceData.circular,
|
|
193
|
+
map(this.getAllEnzymesByName())
|
|
194
|
+
);
|
|
195
|
+
this.forceUpdate();
|
|
196
|
+
};
|
|
197
|
+
|
|
198
|
+
clearSelection = () => {
|
|
199
|
+
const { selectedEnzymeGroup } = this.state;
|
|
200
|
+
const selectedEnzymesKey = `selectedEnzymes_${selectedEnzymeGroup}`;
|
|
201
|
+
this.setState({
|
|
202
|
+
[selectedEnzymesKey]: {}
|
|
203
|
+
});
|
|
204
|
+
};
|
|
205
|
+
render() {
|
|
206
|
+
const { hideModal } = this.props;
|
|
207
|
+
if (!this.enzymeGroups) return null;
|
|
208
|
+
const { selectedEnzymeGroup, searchInput, enzymeGroupToMoveTo } =
|
|
209
|
+
this.state;
|
|
210
|
+
const selectedEnzymesKey = `selectedEnzymes_${selectedEnzymeGroup}`;
|
|
211
|
+
const selectedEnzymesForGroup = this.state[selectedEnzymesKey] || {};
|
|
212
|
+
const selectedCount = countBy(selectedEnzymesForGroup, (e) => e).true || 0;
|
|
213
|
+
const fullSelectedEnzGroup = this.enzymeGroups[selectedEnzymeGroup] || {};
|
|
214
|
+
|
|
215
|
+
const enzymeList = flatMap(fullSelectedEnzGroup.enzymes, (enz, i) => {
|
|
216
|
+
const name = `${enz.name} (${
|
|
217
|
+
(this.cutsitesByEnzymeName &&
|
|
218
|
+
this.cutsitesByEnzymeName[enz.name] &&
|
|
219
|
+
this.cutsitesByEnzymeName[enz.name].length) ||
|
|
220
|
+
0
|
|
221
|
+
})`;
|
|
222
|
+
if (
|
|
223
|
+
searchInput &&
|
|
224
|
+
!name.toLowerCase().includes(searchInput.toLowerCase())
|
|
225
|
+
) {
|
|
226
|
+
return [];
|
|
227
|
+
}
|
|
228
|
+
return (
|
|
229
|
+
<div
|
|
230
|
+
onMouseOver={() => {
|
|
231
|
+
easyStore.hoveredEnzyme = enz.name;
|
|
232
|
+
clearTimeout(this.clearId);
|
|
233
|
+
}}
|
|
234
|
+
onMouseLeave={() => {
|
|
235
|
+
this.clearId = setTimeout(() => {
|
|
236
|
+
easyStore.hoveredEnzyme = "";
|
|
237
|
+
}, 100);
|
|
238
|
+
}}
|
|
239
|
+
onClick={() => {
|
|
240
|
+
this.setState({
|
|
241
|
+
[selectedEnzymesKey]: {
|
|
242
|
+
...selectedEnzymesForGroup,
|
|
243
|
+
[enz.name]: !selectedEnzymesForGroup[enz.name]
|
|
244
|
+
}
|
|
245
|
+
});
|
|
246
|
+
}}
|
|
247
|
+
className={classNames(Classes.MENU_ITEM, "veEnzymeDialogEnzyme", {
|
|
248
|
+
[`${Classes.ACTIVE} ${Classes.INTENT_PRIMARY}`]:
|
|
249
|
+
selectedEnzymesForGroup[enz.name]
|
|
250
|
+
})}
|
|
251
|
+
key={i}
|
|
252
|
+
>
|
|
253
|
+
{name}
|
|
254
|
+
</div>
|
|
255
|
+
);
|
|
256
|
+
});
|
|
257
|
+
// const enzymesForGroup =
|
|
258
|
+
return (
|
|
259
|
+
<div
|
|
260
|
+
style={{ height: 500 }}
|
|
261
|
+
className={classNames(
|
|
262
|
+
Classes.DIALOG_BODY,
|
|
263
|
+
"tg-min-width-dialog veEnzymeDialog"
|
|
264
|
+
)}
|
|
265
|
+
>
|
|
266
|
+
<div
|
|
267
|
+
className="veEnzymeDialogInner"
|
|
268
|
+
style={{ display: "flex", height: "100%" }}
|
|
269
|
+
>
|
|
270
|
+
<div
|
|
271
|
+
className="veEnzymeDialogEnzymeGroups"
|
|
272
|
+
style={{
|
|
273
|
+
minWidth: 150,
|
|
274
|
+
height: "100%",
|
|
275
|
+
display: "flex",
|
|
276
|
+
flexDirection: "column",
|
|
277
|
+
borderRight: "1px solid lightgrey",
|
|
278
|
+
paddingRight: 5
|
|
279
|
+
}}
|
|
280
|
+
>
|
|
281
|
+
<h5>Enzyme Groups:</h5>
|
|
282
|
+
<div style={{ overflowY: "auto" }}>
|
|
283
|
+
{map(this.enzymeGroups, (group, i) => {
|
|
284
|
+
return (
|
|
285
|
+
<React.Fragment>
|
|
286
|
+
<div
|
|
287
|
+
onClick={() => {
|
|
288
|
+
this.setState({
|
|
289
|
+
selectedEnzymeGroup: group.name
|
|
290
|
+
});
|
|
291
|
+
}}
|
|
292
|
+
className={classNames(Classes.MENU_ITEM, {
|
|
293
|
+
[Classes.ACTIVE]: selectedEnzymeGroup === group.name
|
|
294
|
+
})}
|
|
295
|
+
style={{ marginBottom: 5, cursor: "pointer" }}
|
|
296
|
+
key={i}
|
|
297
|
+
>
|
|
298
|
+
{group.name} {" "}
|
|
299
|
+
{group.tooltipInfo && (
|
|
300
|
+
<InfoHelper
|
|
301
|
+
color="grey"
|
|
302
|
+
isInline
|
|
303
|
+
content={group.tooltipInfo}
|
|
304
|
+
></InfoHelper>
|
|
305
|
+
)}
|
|
306
|
+
</div>
|
|
307
|
+
{group.name === "Hidden" && (
|
|
308
|
+
<div className={Classes.MENU_DIVIDER}></div>
|
|
309
|
+
)}
|
|
310
|
+
</React.Fragment>
|
|
311
|
+
);
|
|
312
|
+
})}
|
|
313
|
+
</div>
|
|
314
|
+
<ButtonGroup style={{ width: "fit-content" }}>
|
|
315
|
+
<Tooltip
|
|
316
|
+
disabled={window.Cypress}
|
|
317
|
+
position="bottom"
|
|
318
|
+
content="Create New Group"
|
|
319
|
+
>
|
|
320
|
+
<Popover
|
|
321
|
+
content={
|
|
322
|
+
<div
|
|
323
|
+
className="veNewEnzymeGroupPopover"
|
|
324
|
+
style={{ padding: 10 }}
|
|
325
|
+
>
|
|
326
|
+
<h5>Create new enzyme group</h5>
|
|
327
|
+
<div style={{ display: "flex" }}>
|
|
328
|
+
<InputGroup
|
|
329
|
+
autoFocus
|
|
330
|
+
className="veNewEnzymeGroupName"
|
|
331
|
+
></InputGroup>
|
|
332
|
+
<AnchorButton
|
|
333
|
+
className={Classes.POPOVER_DISMISS}
|
|
334
|
+
onClick={() => {
|
|
335
|
+
const newName = document.querySelector(
|
|
336
|
+
".veNewEnzymeGroupName input"
|
|
337
|
+
).value;
|
|
338
|
+
if (!newName) {
|
|
339
|
+
return window.toastr.error("Invalid name");
|
|
340
|
+
}
|
|
341
|
+
if (this.enzymeGroups[newName]) {
|
|
342
|
+
window.toastr.error(
|
|
343
|
+
"Choose a different group name"
|
|
344
|
+
);
|
|
345
|
+
} else {
|
|
346
|
+
window.toastr.success(
|
|
347
|
+
"Created New Enzyme Group " + newName
|
|
348
|
+
);
|
|
349
|
+
window.createNewEnzymeGroup(newName);
|
|
350
|
+
this.refreshEnzymeGroups();
|
|
351
|
+
this.setState({
|
|
352
|
+
selectedEnzymeGroup: newName
|
|
353
|
+
});
|
|
354
|
+
}
|
|
355
|
+
}}
|
|
356
|
+
icon="tick"
|
|
357
|
+
intent="success"
|
|
358
|
+
></AnchorButton>
|
|
359
|
+
</div>
|
|
360
|
+
</div>
|
|
361
|
+
}
|
|
362
|
+
>
|
|
363
|
+
<AnchorButton
|
|
364
|
+
className="veEnzymeDialogAddGroupBtn"
|
|
365
|
+
minimal
|
|
366
|
+
icon="add"
|
|
367
|
+
></AnchorButton>
|
|
368
|
+
</Popover>
|
|
369
|
+
</Tooltip>
|
|
370
|
+
<Popover
|
|
371
|
+
content={
|
|
372
|
+
<div
|
|
373
|
+
className="veEditEnzymeGroupPopover"
|
|
374
|
+
style={{ padding: 10 }}
|
|
375
|
+
>
|
|
376
|
+
<h5>Edit group name</h5>
|
|
377
|
+
<div style={{ display: "flex" }}>
|
|
378
|
+
<InputGroup
|
|
379
|
+
defaultValue={selectedEnzymeGroup}
|
|
380
|
+
autoFocus
|
|
381
|
+
className="veEditEnzymeGroupName"
|
|
382
|
+
></InputGroup>
|
|
383
|
+
<AnchorButton
|
|
384
|
+
className={Classes.POPOVER_DISMISS}
|
|
385
|
+
onClick={() => {
|
|
386
|
+
const newName = document.querySelector(
|
|
387
|
+
".veEditEnzymeGroupName input"
|
|
388
|
+
).value;
|
|
389
|
+
if (!newName) {
|
|
390
|
+
return window.toastr.error("Invalid name");
|
|
391
|
+
}
|
|
392
|
+
if (this.enzymeGroups[newName]) {
|
|
393
|
+
window.toastr.error(
|
|
394
|
+
"Choose a different group name"
|
|
395
|
+
);
|
|
396
|
+
} else {
|
|
397
|
+
window.toastr.success("Edit Successful");
|
|
398
|
+
window.editEnzymeGroupName(
|
|
399
|
+
selectedEnzymeGroup,
|
|
400
|
+
newName
|
|
401
|
+
);
|
|
402
|
+
this.refreshEnzymeGroups();
|
|
403
|
+
this.setState({
|
|
404
|
+
selectedEnzymeGroup: newName
|
|
405
|
+
});
|
|
406
|
+
}
|
|
407
|
+
}}
|
|
408
|
+
icon="tick"
|
|
409
|
+
intent="success"
|
|
410
|
+
></AnchorButton>
|
|
411
|
+
</div>
|
|
412
|
+
</div>
|
|
413
|
+
}
|
|
414
|
+
>
|
|
415
|
+
<Tooltip
|
|
416
|
+
disabled={window.Cypress}
|
|
417
|
+
position="bottom"
|
|
418
|
+
content="Edit Group Name"
|
|
419
|
+
>
|
|
420
|
+
<AnchorButton
|
|
421
|
+
disabled={fullSelectedEnzGroup.protected}
|
|
422
|
+
minimal
|
|
423
|
+
icon="edit"
|
|
424
|
+
></AnchorButton>
|
|
425
|
+
</Tooltip>
|
|
426
|
+
</Popover>
|
|
427
|
+
<Tooltip
|
|
428
|
+
disabled={window.Cypress}
|
|
429
|
+
position="bottom"
|
|
430
|
+
content="Delete Group"
|
|
431
|
+
>
|
|
432
|
+
<AnchorButton
|
|
433
|
+
disabled={fullSelectedEnzGroup.protected}
|
|
434
|
+
onClick={async () => {
|
|
435
|
+
const confirm = await showConfirmationDialog({
|
|
436
|
+
text: `Are you sure you want to delete this group, ${selectedEnzymeGroup}?`,
|
|
437
|
+
intent: Intent.DANGER
|
|
438
|
+
});
|
|
439
|
+
if (confirm) {
|
|
440
|
+
window.deleteEnzymeGroup(selectedEnzymeGroup);
|
|
441
|
+
this.refreshEnzymeGroups();
|
|
442
|
+
this.setState({
|
|
443
|
+
selectedEnzymeGroup: "My Enzymes"
|
|
444
|
+
});
|
|
445
|
+
}
|
|
446
|
+
}}
|
|
447
|
+
minimal
|
|
448
|
+
icon="trash"
|
|
449
|
+
></AnchorButton>
|
|
450
|
+
</Tooltip>
|
|
451
|
+
</ButtonGroup>
|
|
452
|
+
</div>
|
|
453
|
+
<div className="veEnzymeDialogEnzymes">
|
|
454
|
+
<div
|
|
455
|
+
className="veEnzymeDialogSearch"
|
|
456
|
+
style={{ width: 250, paddingBottom: 5 }}
|
|
457
|
+
>
|
|
458
|
+
<InputGroup
|
|
459
|
+
round
|
|
460
|
+
placeholder="Search by name or # of cuts"
|
|
461
|
+
onChange={(e) => {
|
|
462
|
+
this.setState({
|
|
463
|
+
searchInput: e.target.value
|
|
464
|
+
});
|
|
465
|
+
}}
|
|
466
|
+
value={searchInput}
|
|
467
|
+
rightElement={
|
|
468
|
+
searchInput && (
|
|
469
|
+
<AnchorButton
|
|
470
|
+
icon="cross"
|
|
471
|
+
minimal
|
|
472
|
+
intent="danger"
|
|
473
|
+
onClick={(e) => {
|
|
474
|
+
this.setState({ searchInput: "" });
|
|
475
|
+
e.stopPropagation();
|
|
476
|
+
}}
|
|
477
|
+
></AnchorButton>
|
|
478
|
+
)
|
|
479
|
+
}
|
|
480
|
+
leftIcon="search"
|
|
481
|
+
></InputGroup>
|
|
482
|
+
</div>
|
|
483
|
+
<div
|
|
484
|
+
style={{
|
|
485
|
+
height: "84%",
|
|
486
|
+
display: "flex",
|
|
487
|
+
flexFlow: "column",
|
|
488
|
+
justifyContent: "space-between"
|
|
489
|
+
}}
|
|
490
|
+
>
|
|
491
|
+
<div
|
|
492
|
+
className="veEnzymeDialogEnzymesList"
|
|
493
|
+
style={{
|
|
494
|
+
height: "fit-parent",
|
|
495
|
+
overflowY: "auto",
|
|
496
|
+
display: "flex",
|
|
497
|
+
flexWrap: "wrap",
|
|
498
|
+
maxWidth: "100%"
|
|
499
|
+
}}
|
|
500
|
+
>
|
|
501
|
+
{/* <span style={{fontSize: 10}}>{fullSelectedEnzGroup.message || "Enzymes added here can be filtered for in the Cutsite Filter"} </span> */}
|
|
502
|
+
{enzymeList.length
|
|
503
|
+
? enzymeList
|
|
504
|
+
: "Copy enzymes from other groups to your custom group"}
|
|
505
|
+
</div>
|
|
506
|
+
<HoverView
|
|
507
|
+
allEnzymesByName={this.getAllEnzymesByName()}
|
|
508
|
+
></HoverView>
|
|
509
|
+
</div>
|
|
510
|
+
<div style={{ display: "flex", justifyContent: "space-between" }}>
|
|
511
|
+
<ButtonGroup>
|
|
512
|
+
<div>
|
|
513
|
+
<Tooltip
|
|
514
|
+
position="left"
|
|
515
|
+
content="Copy Selection To Another Group"
|
|
516
|
+
>
|
|
517
|
+
<Popover
|
|
518
|
+
canEscapeKeyClose
|
|
519
|
+
disabled={!selectedCount}
|
|
520
|
+
// targetClassName={"veEnzymeDialogEnzymeAddIcon"}
|
|
521
|
+
// targetProps={{style: {flex: "0 0 auto"}}}
|
|
522
|
+
// wrapperTagName="div"
|
|
523
|
+
position="top"
|
|
524
|
+
content={
|
|
525
|
+
<MoveToInner
|
|
526
|
+
{...{
|
|
527
|
+
clearSelection: this.clearSelection,
|
|
528
|
+
refreshEnzymeGroups: this.refreshEnzymeGroups,
|
|
529
|
+
selectedEnzymeGroup,
|
|
530
|
+
enzymeGroupToMoveTo,
|
|
531
|
+
selectedCount,
|
|
532
|
+
selectedEnzymesForGroup,
|
|
533
|
+
enzymeGroups: this.enzymeGroups,
|
|
534
|
+
setStateAbove: (val) => {
|
|
535
|
+
this.setState(val);
|
|
536
|
+
}
|
|
537
|
+
}}
|
|
538
|
+
></MoveToInner>
|
|
539
|
+
}
|
|
540
|
+
target={
|
|
541
|
+
<AnchorButton
|
|
542
|
+
className="veEnzymeGroupAddEnzymesBtn"
|
|
543
|
+
disabled={!selectedCount}
|
|
544
|
+
icon="duplicate"
|
|
545
|
+
></AnchorButton>
|
|
546
|
+
}
|
|
547
|
+
></Popover>
|
|
548
|
+
</Tooltip>
|
|
549
|
+
</div>
|
|
550
|
+
<div>
|
|
551
|
+
<Tooltip
|
|
552
|
+
disabled={window.Cypress}
|
|
553
|
+
position="bottom"
|
|
554
|
+
content="Remove Enzymes"
|
|
555
|
+
>
|
|
556
|
+
<AnchorButton
|
|
557
|
+
className="veRemoveEnzymeFromGroupBtn"
|
|
558
|
+
onClick={async () => {
|
|
559
|
+
const confirm = await showConfirmationDialog({
|
|
560
|
+
text: `Are you sure you want to remove ${selectedCount} enzyme(s) from ${selectedEnzymeGroup}`,
|
|
561
|
+
intent: Intent.DANGER
|
|
562
|
+
});
|
|
563
|
+
if (confirm) {
|
|
564
|
+
const enzymes = flatMap(
|
|
565
|
+
fullSelectedEnzGroup.enzymes,
|
|
566
|
+
(e) =>
|
|
567
|
+
selectedEnzymesForGroup[e.name] ? [] : e.name
|
|
568
|
+
);
|
|
569
|
+
window.updateEnzymeGroup(
|
|
570
|
+
selectedEnzymeGroup,
|
|
571
|
+
enzymes
|
|
572
|
+
);
|
|
573
|
+
this.setState({ [selectedEnzymesKey]: {} });
|
|
574
|
+
this.refreshEnzymeGroups();
|
|
575
|
+
window.toastr.success(
|
|
576
|
+
`${selectedCount} enzyme(s) removed`
|
|
577
|
+
);
|
|
578
|
+
}
|
|
579
|
+
}}
|
|
580
|
+
disabled={
|
|
581
|
+
fullSelectedEnzGroup.protected || !selectedCount
|
|
582
|
+
}
|
|
583
|
+
icon="trash"
|
|
584
|
+
></AnchorButton>
|
|
585
|
+
</Tooltip>
|
|
586
|
+
</div>
|
|
587
|
+
|
|
588
|
+
<div>
|
|
589
|
+
{/* <Popover
|
|
590
|
+
autoFocus={false}
|
|
591
|
+
captureDismiss
|
|
592
|
+
content={
|
|
593
|
+
<Menu>
|
|
594
|
+
{createMenu([
|
|
595
|
+
{
|
|
596
|
+
text: "All",
|
|
597
|
+
onClick: () => {
|
|
598
|
+
const selectedEnzymes = {};
|
|
599
|
+
forEach(
|
|
600
|
+
fullSelectedEnzGroup.enzymes,
|
|
601
|
+
enzyme => {
|
|
602
|
+
selectedEnzymes[enzyme.name] = true;
|
|
603
|
+
}
|
|
604
|
+
);
|
|
605
|
+
|
|
606
|
+
this.setState({
|
|
607
|
+
[selectedEnzymesKey]: selectedEnzymes
|
|
608
|
+
});
|
|
609
|
+
}
|
|
610
|
+
},
|
|
611
|
+
{
|
|
612
|
+
text: "Single cutters"
|
|
613
|
+
},
|
|
614
|
+
{
|
|
615
|
+
text: "Double cutters"
|
|
616
|
+
},
|
|
617
|
+
{
|
|
618
|
+
text: "Cut X times",
|
|
619
|
+
submenu: [
|
|
620
|
+
3,
|
|
621
|
+
4,
|
|
622
|
+
5,
|
|
623
|
+
6,
|
|
624
|
+
7,
|
|
625
|
+
8,
|
|
626
|
+
9,
|
|
627
|
+
10,
|
|
628
|
+
11,
|
|
629
|
+
12,
|
|
630
|
+
13,
|
|
631
|
+
14,
|
|
632
|
+
15,
|
|
633
|
+
16
|
|
634
|
+
].map(n => {
|
|
635
|
+
return {
|
|
636
|
+
text: `Cut ${n} times`
|
|
637
|
+
};
|
|
638
|
+
})
|
|
639
|
+
},
|
|
640
|
+
{
|
|
641
|
+
text: "Cut >X times",
|
|
642
|
+
submenu: [
|
|
643
|
+
1,
|
|
644
|
+
2,
|
|
645
|
+
3,
|
|
646
|
+
4,
|
|
647
|
+
5,
|
|
648
|
+
6,
|
|
649
|
+
7,
|
|
650
|
+
8,
|
|
651
|
+
9,
|
|
652
|
+
10,
|
|
653
|
+
11,
|
|
654
|
+
12,
|
|
655
|
+
13,
|
|
656
|
+
14,
|
|
657
|
+
15,
|
|
658
|
+
16
|
|
659
|
+
].map(n => {
|
|
660
|
+
return {
|
|
661
|
+
text: `Cut >${n} times`
|
|
662
|
+
};
|
|
663
|
+
})
|
|
664
|
+
},
|
|
665
|
+
{
|
|
666
|
+
text: "Cut <X times",
|
|
667
|
+
submenu: [
|
|
668
|
+
1,
|
|
669
|
+
2,
|
|
670
|
+
3,
|
|
671
|
+
4,
|
|
672
|
+
5,
|
|
673
|
+
6,
|
|
674
|
+
7,
|
|
675
|
+
8,
|
|
676
|
+
9,
|
|
677
|
+
10,
|
|
678
|
+
11,
|
|
679
|
+
12,
|
|
680
|
+
13,
|
|
681
|
+
14,
|
|
682
|
+
15,
|
|
683
|
+
16
|
|
684
|
+
].map(n => {
|
|
685
|
+
return {
|
|
686
|
+
text: `Cut <${n} times`
|
|
687
|
+
};
|
|
688
|
+
})
|
|
689
|
+
},
|
|
690
|
+
{
|
|
691
|
+
text: "Blunt cutters"
|
|
692
|
+
},
|
|
693
|
+
{
|
|
694
|
+
text: "3' cutters"
|
|
695
|
+
},
|
|
696
|
+
{
|
|
697
|
+
text: "5' cutters"
|
|
698
|
+
},
|
|
699
|
+
{
|
|
700
|
+
text: "4 bp Recognition Site"
|
|
701
|
+
},
|
|
702
|
+
{
|
|
703
|
+
text: "5 bp Recognition Site"
|
|
704
|
+
},
|
|
705
|
+
{
|
|
706
|
+
text: "6 bp Recognition Site"
|
|
707
|
+
},
|
|
708
|
+
{
|
|
709
|
+
text: "Degenerate Recognition Site"
|
|
710
|
+
},
|
|
711
|
+
{
|
|
712
|
+
text: "Degenerate Cut"
|
|
713
|
+
}
|
|
714
|
+
])}
|
|
715
|
+
</Menu>
|
|
716
|
+
}
|
|
717
|
+
position={Position.RIGHT_TOP}
|
|
718
|
+
>
|
|
719
|
+
<AnchorButton>Select...</AnchorButton>
|
|
720
|
+
</Popover> */}
|
|
721
|
+
</div>
|
|
722
|
+
<AnchorButton
|
|
723
|
+
onClick={() => {
|
|
724
|
+
this.setState({ [selectedEnzymesKey]: {} });
|
|
725
|
+
}}
|
|
726
|
+
disabled={!selectedCount}
|
|
727
|
+
>
|
|
728
|
+
Deselect {selectedCount}
|
|
729
|
+
</AnchorButton>
|
|
730
|
+
</ButtonGroup>
|
|
731
|
+
{selectedEnzymeGroup === "My Enzymes" && (
|
|
732
|
+
<div>
|
|
733
|
+
<Tooltip
|
|
734
|
+
disabled={window.Cypress}
|
|
735
|
+
position="left"
|
|
736
|
+
content="Create Custom Enzyme"
|
|
737
|
+
>
|
|
738
|
+
<Button
|
|
739
|
+
minimal
|
|
740
|
+
onClick={() => {
|
|
741
|
+
hideModal();
|
|
742
|
+
showDialog({
|
|
743
|
+
dialogType: "CreateCustomEnzyme"
|
|
744
|
+
});
|
|
745
|
+
}}
|
|
746
|
+
className="veEnzymeCreateCustomEnzyme"
|
|
747
|
+
icon="add"
|
|
748
|
+
></Button>
|
|
749
|
+
</Tooltip>
|
|
750
|
+
</div>
|
|
751
|
+
)}
|
|
752
|
+
</div>
|
|
753
|
+
</div>
|
|
754
|
+
</div>
|
|
755
|
+
</div>
|
|
756
|
+
);
|
|
757
|
+
}
|
|
758
|
+
}
|
|
759
|
+
|
|
760
|
+
export default compose(
|
|
761
|
+
wrapDialog({ title: "Manage Enzymes" }),
|
|
762
|
+
withEditorProps
|
|
763
|
+
// reduxForm({
|
|
764
|
+
// form: "EnzymesDialog",
|
|
765
|
+
// validate: ({ id1, id2 }) => {
|
|
766
|
+
// const errors = {};
|
|
767
|
+
// if (!id1 || Array.isArray(id1)) {
|
|
768
|
+
// errors.id1 = "Please select a feature";
|
|
769
|
+
// }
|
|
770
|
+
// if (!id2 || Array.isArray(id2)) {
|
|
771
|
+
// errors.id2 = "Please select a feature";
|
|
772
|
+
// }
|
|
773
|
+
// return errors;
|
|
774
|
+
// }
|
|
775
|
+
// }),
|
|
776
|
+
// formValues("id1", "id2")
|
|
777
|
+
)(EnzymesDialog);
|
|
778
|
+
|
|
779
|
+
function getEnzymesForNames(names, allEnzymesByName) {
|
|
780
|
+
return names.map((n) => {
|
|
781
|
+
return (n && allEnzymesByName[n.toLowerCase()]) || { name: "Not Found!" };
|
|
782
|
+
});
|
|
783
|
+
}
|
|
784
|
+
|
|
785
|
+
class MoveToInner extends React.Component {
|
|
786
|
+
componentDidMount() {
|
|
787
|
+
const {
|
|
788
|
+
selectedEnzymeGroup,
|
|
789
|
+
enzymeGroupToMoveTo,
|
|
790
|
+
setStateAbove,
|
|
791
|
+
enzymeGroups
|
|
792
|
+
} = this.props;
|
|
793
|
+
const enzymeOpts = flatMap(enzymeGroups, (g) => {
|
|
794
|
+
if (g.protected || g.name === selectedEnzymeGroup) return [];
|
|
795
|
+
return {
|
|
796
|
+
value: g.name
|
|
797
|
+
};
|
|
798
|
+
});
|
|
799
|
+
if (!enzymeGroupToMoveTo && enzymeOpts.length) {
|
|
800
|
+
setStateAbove({ enzymeGroupToMoveTo: enzymeOpts[0].value });
|
|
801
|
+
}
|
|
802
|
+
this.setState({
|
|
803
|
+
enzymeOpts
|
|
804
|
+
});
|
|
805
|
+
}
|
|
806
|
+
state = { enzymeOpts: [] };
|
|
807
|
+
render() {
|
|
808
|
+
const {
|
|
809
|
+
clearSelection,
|
|
810
|
+
setStateAbove,
|
|
811
|
+
selectedCount,
|
|
812
|
+
enzymeGroupToMoveTo,
|
|
813
|
+
enzymeGroups,
|
|
814
|
+
refreshEnzymeGroups,
|
|
815
|
+
selectedEnzymesForGroup
|
|
816
|
+
} = this.props;
|
|
817
|
+
const { enzymeOpts } = this.state;
|
|
818
|
+
return (
|
|
819
|
+
<div className="veEnzymeGroupMoveEnzymePopover" style={{ padding: 10 }}>
|
|
820
|
+
{enzymeOpts && !enzymeOpts.length ? (
|
|
821
|
+
<div style={{ maxWidth: 150 }}>
|
|
822
|
+
No other custom enzyme groups exist. Please create a new enzyme
|
|
823
|
+
group to add enzymes to it.
|
|
824
|
+
</div>
|
|
825
|
+
) : (
|
|
826
|
+
<div>
|
|
827
|
+
<h5>Copy {selectedCount} Enzyme(s) To:</h5>
|
|
828
|
+
|
|
829
|
+
<HTMLSelect
|
|
830
|
+
onChange={(e) => {
|
|
831
|
+
setStateAbove({
|
|
832
|
+
enzymeGroupToMoveTo: e.target.value
|
|
833
|
+
});
|
|
834
|
+
}}
|
|
835
|
+
value={enzymeGroupToMoveTo}
|
|
836
|
+
options={enzymeOpts}
|
|
837
|
+
></HTMLSelect>
|
|
838
|
+
<AnchorButton
|
|
839
|
+
className={Classes.POPOVER_DISMISS}
|
|
840
|
+
onClick={() => {
|
|
841
|
+
const enzymes = uniq([
|
|
842
|
+
...map(
|
|
843
|
+
enzymeGroups[enzymeGroupToMoveTo].enzymes,
|
|
844
|
+
(e) => e.name
|
|
845
|
+
),
|
|
846
|
+
...flatMap(selectedEnzymesForGroup, (selected, name) =>
|
|
847
|
+
selected ? name : []
|
|
848
|
+
)
|
|
849
|
+
]);
|
|
850
|
+
|
|
851
|
+
window.updateEnzymeGroup(enzymeGroupToMoveTo, enzymes);
|
|
852
|
+
// setStateAbove({
|
|
853
|
+
// enzymeGroupToMoveTo: e.target.value
|
|
854
|
+
// });
|
|
855
|
+
refreshEnzymeGroups();
|
|
856
|
+
clearSelection();
|
|
857
|
+
window.toastr.success(
|
|
858
|
+
`${selectedCount} enzyme(s) moved to ${enzymeGroupToMoveTo}`
|
|
859
|
+
);
|
|
860
|
+
}}
|
|
861
|
+
intent="success"
|
|
862
|
+
icon="tick"
|
|
863
|
+
></AnchorButton>
|
|
864
|
+
</div>
|
|
865
|
+
)}
|
|
866
|
+
</div>
|
|
867
|
+
);
|
|
868
|
+
}
|
|
869
|
+
}
|
|
870
|
+
|
|
871
|
+
const HoverView = view(({ allEnzymesByName }) => {
|
|
872
|
+
const { hoveredEnzyme } = easyStore;
|
|
873
|
+
return (
|
|
874
|
+
<div
|
|
875
|
+
className="hoveredEnzymeContainer"
|
|
876
|
+
style={{
|
|
877
|
+
overflow: "hidden",
|
|
878
|
+
// maxWidth: "100%",
|
|
879
|
+
minWidth: 0,
|
|
880
|
+
// width: "100%",
|
|
881
|
+
margin: "20px",
|
|
882
|
+
minHeight: 30,
|
|
883
|
+
maxHeight: 30,
|
|
884
|
+
display: "flex",
|
|
885
|
+
justifyContent: "space-between"
|
|
886
|
+
}}
|
|
887
|
+
>
|
|
888
|
+
{hoveredEnzyme}{" "}
|
|
889
|
+
{hoveredEnzyme && (
|
|
890
|
+
<EnzymeViewer
|
|
891
|
+
{...{
|
|
892
|
+
paddingEnd: "--",
|
|
893
|
+
paddingStart: "--",
|
|
894
|
+
sequence: allEnzymesByName[hoveredEnzyme.toLowerCase()].site,
|
|
895
|
+
reverseSnipPosition:
|
|
896
|
+
allEnzymesByName[hoveredEnzyme.toLowerCase()].bottomSnipOffset,
|
|
897
|
+
forwardSnipPosition:
|
|
898
|
+
allEnzymesByName[hoveredEnzyme.toLowerCase()].topSnipOffset
|
|
899
|
+
}}
|
|
900
|
+
></EnzymeViewer>
|
|
901
|
+
)}
|
|
902
|
+
</div>
|
|
903
|
+
);
|
|
904
|
+
});
|