@tekmidian/pai 0.5.6 → 0.6.0

package/dist/db-Dp8VXIMR.mjs

@@ -1,212 +0,0 @@
-import { t as __exportAll } from "./rolldown-runtime-95iHPtFO.mjs";
-import { mkdirSync } from "node:fs";
-import { homedir } from "node:os";
-import { dirname, join } from "node:path";
-import BetterSqlite3 from "better-sqlite3";
-
-//#region src/memory/schema.ts
-const FEDERATION_SCHEMA_SQL = `
-PRAGMA journal_mode = WAL;
-PRAGMA foreign_keys = ON;
-
-CREATE TABLE IF NOT EXISTS memory_files (
-  project_id   INTEGER NOT NULL,
-  path         TEXT    NOT NULL,
-  source       TEXT    NOT NULL DEFAULT 'memory',
-  tier         TEXT    NOT NULL DEFAULT 'topic',
-  hash         TEXT    NOT NULL,
-  mtime        INTEGER NOT NULL,
-  size         INTEGER NOT NULL,
-  PRIMARY KEY (project_id, path)
-);
-
-CREATE TABLE IF NOT EXISTS memory_chunks (
-  id           TEXT    PRIMARY KEY,
-  project_id   INTEGER NOT NULL,
-  source       TEXT    NOT NULL DEFAULT 'memory',
-  tier         TEXT    NOT NULL DEFAULT 'topic',
-  path         TEXT    NOT NULL,
-  start_line   INTEGER NOT NULL,
-  end_line     INTEGER NOT NULL,
-  hash         TEXT    NOT NULL,
-  text         TEXT    NOT NULL,
-  updated_at   INTEGER NOT NULL,
-  embedding    BLOB
-);
-
-CREATE VIRTUAL TABLE IF NOT EXISTS memory_fts USING fts5(
-  text,
-  id UNINDEXED,
-  project_id UNINDEXED,
-  path UNINDEXED,
-  source UNINDEXED,
-  tier UNINDEXED,
-  start_line UNINDEXED,
-  end_line UNINDEXED
-);
-
-CREATE INDEX IF NOT EXISTS idx_mc_project ON memory_chunks(project_id);
-CREATE INDEX IF NOT EXISTS idx_mc_source  ON memory_chunks(project_id, source);
-CREATE INDEX IF NOT EXISTS idx_mc_tier    ON memory_chunks(tier);
-CREATE INDEX IF NOT EXISTS idx_mf_project ON memory_files(project_id);
-
--- Vault file inventory with inode dedup
-CREATE TABLE IF NOT EXISTS vault_files (
-  vault_path  TEXT PRIMARY KEY,
-  inode       INTEGER NOT NULL,
-  device      INTEGER NOT NULL,
-  hash        TEXT NOT NULL,
-  title       TEXT,
-  indexed_at  INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_vf_inode ON vault_files(inode, device);
-
--- Alternate paths to same inode (dual-symlink handling)
-CREATE TABLE IF NOT EXISTS vault_aliases (
-  vault_path     TEXT PRIMARY KEY,
-  canonical_path TEXT NOT NULL,
-  inode          INTEGER NOT NULL,
-  device         INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_va_canonical ON vault_aliases(canonical_path);
-
--- Wikilink graph: directed edges
-CREATE TABLE IF NOT EXISTS vault_links (
-  id          INTEGER PRIMARY KEY AUTOINCREMENT,
-  source_path TEXT NOT NULL,
-  target_raw  TEXT NOT NULL,
-  target_path TEXT,
-  link_type   TEXT NOT NULL DEFAULT 'wikilink',
-  line_number INTEGER NOT NULL DEFAULT 0,
-  UNIQUE(source_path, target_raw, line_number)
-);
-CREATE INDEX IF NOT EXISTS idx_vl_source ON vault_links(source_path);
-CREATE INDEX IF NOT EXISTS idx_vl_target ON vault_links(target_path);
-CREATE INDEX IF NOT EXISTS idx_vl_dead ON vault_links(target_path) WHERE target_path IS NULL;
-
--- Obsidian shortest-match resolution lookup
-CREATE TABLE IF NOT EXISTS vault_name_index (
-  name       TEXT NOT NULL,
-  vault_path TEXT NOT NULL,
-  PRIMARY KEY (name, vault_path)
-);
-CREATE INDEX IF NOT EXISTS idx_vni_name ON vault_name_index(name);
-
--- Per-file health metrics
-CREATE TABLE IF NOT EXISTS vault_health (
-  vault_path      TEXT PRIMARY KEY,
-  inbound_count   INTEGER NOT NULL DEFAULT 0,
-  outbound_count  INTEGER NOT NULL DEFAULT 0,
-  dead_link_count INTEGER NOT NULL DEFAULT 0,
-  is_orphan       INTEGER NOT NULL DEFAULT 0,
-  computed_at     INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_vh_orphan ON vault_health(is_orphan) WHERE is_orphan = 1;
-`;
-/**
-* Apply the full federation schema to an open database.
-*
-* Idempotent — all statements use IF NOT EXISTS so calling this on an
-* already-initialised database is safe.
-*
-* Also runs any necessary migrations for existing databases (e.g. adding the
-* embedding column to an older schema that was created without it).
-*/
-function initializeFederationSchema(db) {
-	db.exec(FEDERATION_SCHEMA_SQL);
-	runMigrations(db);
-}
-/**
-* Apply incremental migrations to an existing database.
-*
-* Each migration is idempotent — safe to call on a database that has already
-* been migrated.
-*/
-function runMigrations(db) {
-	if (!db.prepare("PRAGMA table_info(memory_chunks)").all().some((c) => c.name === "embedding")) db.exec("ALTER TABLE memory_chunks ADD COLUMN embedding BLOB");
-	db.exec("CREATE INDEX IF NOT EXISTS idx_mc_embedding ON memory_chunks(id) WHERE embedding IS NOT NULL");
-	if (db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='vault_files'").all().length === 0) db.exec(`
-CREATE TABLE IF NOT EXISTS vault_files (
-  vault_path  TEXT PRIMARY KEY,
-  inode       INTEGER NOT NULL,
-  device      INTEGER NOT NULL,
-  hash        TEXT NOT NULL,
-  title       TEXT,
-  indexed_at  INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_vf_inode ON vault_files(inode, device);
-
-CREATE TABLE IF NOT EXISTS vault_aliases (
-  vault_path     TEXT PRIMARY KEY,
-  canonical_path TEXT NOT NULL,
-  inode          INTEGER NOT NULL,
-  device         INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_va_canonical ON vault_aliases(canonical_path);
-
-CREATE TABLE IF NOT EXISTS vault_links (
-  id          INTEGER PRIMARY KEY AUTOINCREMENT,
-  source_path TEXT NOT NULL,
-  target_raw  TEXT NOT NULL,
-  target_path TEXT,
-  link_type   TEXT NOT NULL DEFAULT 'wikilink',
-  line_number INTEGER NOT NULL DEFAULT 0,
-  UNIQUE(source_path, target_raw, line_number)
-);
-CREATE INDEX IF NOT EXISTS idx_vl_source ON vault_links(source_path);
-CREATE INDEX IF NOT EXISTS idx_vl_target ON vault_links(target_path);
-CREATE INDEX IF NOT EXISTS idx_vl_dead ON vault_links(target_path) WHERE target_path IS NULL;
-
-CREATE TABLE IF NOT EXISTS vault_name_index (
-  name       TEXT NOT NULL,
-  vault_path TEXT NOT NULL,
-  PRIMARY KEY (name, vault_path)
-);
-CREATE INDEX IF NOT EXISTS idx_vni_name ON vault_name_index(name);
-
-CREATE TABLE IF NOT EXISTS vault_health (
-  vault_path      TEXT PRIMARY KEY,
-  inbound_count   INTEGER NOT NULL DEFAULT 0,
-  outbound_count  INTEGER NOT NULL DEFAULT 0,
-  dead_link_count INTEGER NOT NULL DEFAULT 0,
-  is_orphan       INTEGER NOT NULL DEFAULT 0,
-  computed_at     INTEGER NOT NULL
-);
-CREATE INDEX IF NOT EXISTS idx_vh_orphan ON vault_health(is_orphan) WHERE is_orphan = 1;
-`);
-}
-
-//#endregion
-//#region src/memory/db.ts
-/**
-* Database connection helper for the PAI federation DB.
-*
-* Uses better-sqlite3 (synchronous API) to open or create federation.db.
-* On first open it runs the full DDL via initializeFederationSchema().
-*/
-var db_exports = /* @__PURE__ */ __exportAll({ openFederation: () => openFederation });
-/** Default federation DB path inside the ~/.pai/ directory. */
-const DEFAULT_FEDERATION_PATH = join(homedir(), ".pai", "federation.db");
-/**
-* Open (or create) the PAI federation database.
-*
-* @param path  Absolute path to federation.db.  Defaults to ~/.pai/federation.db.
-* @returns     An open better-sqlite3 Database instance.
-*
-* Side effects on first call:
-*  - Creates the parent directory if it does not exist.
-*  - Enables WAL journal mode.
-*  - Runs initializeFederationSchema() to ensure tables exist.
-*/
-function openFederation(path = DEFAULT_FEDERATION_PATH) {
-	mkdirSync(dirname(path), { recursive: true });
-	const db = new BetterSqlite3(path);
-	db.pragma("journal_mode = WAL");
-	db.pragma("foreign_keys = ON");
-	initializeFederationSchema(db);
-	return db;
-}
-
-//#endregion
-export { initializeFederationSchema as i, openFederation as n, FEDERATION_SCHEMA_SQL as r, db_exports as t };
-//# sourceMappingURL=db-Dp8VXIMR.mjs.map

package/dist/db-Dp8VXIMR.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"db-Dp8VXIMR.mjs","names":[],"sources":["../src/memory/schema.ts","../src/memory/db.ts"],"sourcesContent":["/**\n * SQLite DDL for the PAI federation database (federation.db).\n *\n * The federation DB is the cross-project search index — a single SQLite file\n * at ~/.pai/federation.db that holds chunked text from every registered\n * project's memory/ and Notes/ directories.\n *\n * Tables:\n *  - memory_files      — file-level metadata (hash, mtime, size) for change detection\n *  - memory_chunks     — chunked text with line numbers, tier classification, and optional embedding\n *  - memory_fts        — FTS5 virtual table backed by memory_chunks text\n *  - vault_files       — Obsidian vault file inventory with inode-based dedup\n *  - vault_aliases     — Alternate paths to same inode (dual-symlink handling)\n *  - vault_links       — Directed wikilink graph edges\n *  - vault_name_index  — Obsidian shortest-match resolution lookup\n *  - vault_health      — Per-file health metrics (orphan detection, dead links)\n *\n * Schema version history:\n *  v1 — initial schema (BM25 search only)\n *  v2 — added embedding BLOB column to memory_chunks (Phase 2.5, vector search)\n *  v3 — added vault tables for Zettelkasten file graph (vault_files, vault_aliases,\n *        vault_links, vault_name_index, vault_health)\n */\n\nimport type { Database } from \"better-sqlite3\";\n\n/** Current schema version. Bump when adding new columns or tables. */\nexport const SCHEMA_VERSION = 3;\n\nexport const FEDERATION_SCHEMA_SQL = `\nPRAGMA journal_mode = WAL;\nPRAGMA foreign_keys = ON;\n\nCREATE TABLE IF NOT EXISTS memory_files (\n  project_id   INTEGER NOT NULL,\n  path         TEXT    NOT NULL,\n  source       TEXT    NOT NULL DEFAULT 'memory',\n  tier         TEXT    NOT NULL DEFAULT 'topic',\n  hash         TEXT    NOT NULL,\n  mtime        INTEGER NOT NULL,\n  size         INTEGER NOT NULL,\n  PRIMARY KEY (project_id, path)\n);\n\nCREATE TABLE IF NOT EXISTS memory_chunks (\n  id           TEXT    PRIMARY KEY,\n  project_id   INTEGER NOT NULL,\n  source       TEXT    NOT NULL DEFAULT 'memory',\n  tier         TEXT    NOT NULL DEFAULT 'topic',\n  path         TEXT    NOT NULL,\n  start_line   INTEGER NOT NULL,\n  end_line     INTEGER NOT NULL,\n  hash         TEXT    NOT NULL,\n  text         TEXT    NOT NULL,\n  updated_at   INTEGER NOT NULL,\n  embedding    BLOB\n);\n\nCREATE VIRTUAL TABLE IF NOT EXISTS memory_fts USING fts5(\n  text,\n  id UNINDEXED,\n  project_id UNINDEXED,\n  path UNINDEXED,\n  source UNINDEXED,\n  tier UNINDEXED,\n  start_line UNINDEXED,\n  end_line UNINDEXED\n);\n\nCREATE INDEX IF NOT EXISTS idx_mc_project ON memory_chunks(project_id);\nCREATE INDEX IF NOT EXISTS idx_mc_source  ON memory_chunks(project_id, source);\nCREATE INDEX IF NOT EXISTS idx_mc_tier    ON memory_chunks(tier);\nCREATE INDEX IF NOT EXISTS idx_mf_project ON memory_files(project_id);\n\n-- Vault file inventory with inode dedup\nCREATE TABLE IF NOT EXISTS vault_files (\n  vault_path  TEXT PRIMARY KEY,\n  inode       INTEGER NOT NULL,\n  device      INTEGER NOT NULL,\n  hash        TEXT NOT NULL,\n  title       TEXT,\n  indexed_at  INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_vf_inode ON vault_files(inode, device);\n\n-- Alternate paths to same inode (dual-symlink handling)\nCREATE TABLE IF NOT EXISTS vault_aliases (\n  vault_path     TEXT PRIMARY KEY,\n  canonical_path TEXT NOT NULL,\n  inode          INTEGER NOT NULL,\n  device         INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_va_canonical ON vault_aliases(canonical_path);\n\n-- Wikilink graph: directed edges\nCREATE TABLE IF NOT EXISTS vault_links (\n  id          INTEGER PRIMARY KEY AUTOINCREMENT,\n  source_path TEXT NOT NULL,\n  target_raw  TEXT NOT NULL,\n  target_path TEXT,\n  link_type   TEXT NOT NULL DEFAULT 'wikilink',\n  line_number INTEGER NOT NULL DEFAULT 0,\n  UNIQUE(source_path, target_raw, line_number)\n);\nCREATE INDEX IF NOT EXISTS idx_vl_source ON vault_links(source_path);\nCREATE INDEX IF NOT EXISTS idx_vl_target ON vault_links(target_path);\nCREATE INDEX IF NOT EXISTS idx_vl_dead ON vault_links(target_path) WHERE target_path IS NULL;\n\n-- Obsidian shortest-match resolution lookup\nCREATE TABLE IF NOT EXISTS vault_name_index (\n  name       TEXT NOT NULL,\n  vault_path TEXT NOT NULL,\n  PRIMARY KEY (name, vault_path)\n);\nCREATE INDEX IF NOT EXISTS idx_vni_name ON vault_name_index(name);\n\n-- Per-file health metrics\nCREATE TABLE IF NOT EXISTS vault_health (\n  vault_path      TEXT PRIMARY KEY,\n  inbound_count   INTEGER NOT NULL DEFAULT 0,\n  outbound_count  INTEGER NOT NULL DEFAULT 0,\n  dead_link_count INTEGER NOT NULL DEFAULT 0,\n  is_orphan       INTEGER NOT NULL DEFAULT 0,\n  computed_at     INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_vh_orphan ON vault_health(is_orphan) WHERE is_orphan = 1;\n`;\n\n/**\n * Apply the full federation schema to an open database.\n *\n * Idempotent — all statements use IF NOT EXISTS so calling this on an\n * already-initialised database is safe.\n *\n * Also runs any necessary migrations for existing databases (e.g. adding the\n * embedding column to an older schema that was created without it).\n */\nexport function initializeFederationSchema(db: Database): void {\n  db.exec(FEDERATION_SCHEMA_SQL);\n  runMigrations(db);\n}\n\n// ---------------------------------------------------------------------------\n// Migrations\n// ---------------------------------------------------------------------------\n\n/**\n * Apply incremental migrations to an existing database.\n *\n * Each migration is idempotent — safe to call on a database that has already\n * been migrated.\n */\nfunction runMigrations(db: Database): void {\n  // Migration: add embedding BLOB column if it does not already exist.\n  // This handles databases created before Phase 2.5 (schema v1).\n  const columns = db.prepare(\"PRAGMA table_info(memory_chunks)\").all() as Array<{\n    name: string;\n  }>;\n  const hasEmbedding = columns.some((c) => c.name === \"embedding\");\n  if (!hasEmbedding) {\n    db.exec(\"ALTER TABLE memory_chunks ADD COLUMN embedding BLOB\");\n  }\n\n  // Create the partial index for embedded chunks (safe now that the column exists)\n  db.exec(\n    \"CREATE INDEX IF NOT EXISTS idx_mc_embedding ON memory_chunks(id) WHERE embedding IS NOT NULL\",\n  );\n\n  // Migration v2 -> v3: add vault tables if vault_files does not yet exist.\n  // All vault table DDL uses CREATE TABLE/INDEX IF NOT EXISTS, so this is idempotent.\n  const tables = db.prepare(\n    \"SELECT name FROM sqlite_master WHERE type='table' AND name='vault_files'\",\n  ).all() as Array<{ name: string }>;\n  if (tables.length === 0) {\n    db.exec(`\nCREATE TABLE IF NOT EXISTS vault_files (\n  vault_path  TEXT PRIMARY KEY,\n  inode       INTEGER NOT NULL,\n  device      INTEGER NOT NULL,\n  hash        TEXT NOT NULL,\n  title       TEXT,\n  indexed_at  INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_vf_inode ON vault_files(inode, device);\n\nCREATE TABLE IF NOT EXISTS vault_aliases (\n  vault_path     TEXT PRIMARY KEY,\n  canonical_path TEXT NOT NULL,\n  inode          INTEGER NOT NULL,\n  device         INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_va_canonical ON vault_aliases(canonical_path);\n\nCREATE TABLE IF NOT EXISTS vault_links (\n  id          INTEGER PRIMARY KEY AUTOINCREMENT,\n  source_path TEXT NOT NULL,\n  target_raw  TEXT NOT NULL,\n  target_path TEXT,\n  link_type   TEXT NOT NULL DEFAULT 'wikilink',\n  line_number INTEGER NOT NULL DEFAULT 0,\n  UNIQUE(source_path, target_raw, line_number)\n);\nCREATE INDEX IF NOT EXISTS idx_vl_source ON vault_links(source_path);\nCREATE INDEX IF NOT EXISTS idx_vl_target ON vault_links(target_path);\nCREATE INDEX IF NOT EXISTS idx_vl_dead ON vault_links(target_path) WHERE target_path IS NULL;\n\nCREATE TABLE IF NOT EXISTS vault_name_index (\n  name       TEXT NOT NULL,\n  vault_path TEXT NOT NULL,\n  PRIMARY KEY (name, vault_path)\n);\nCREATE INDEX IF NOT EXISTS idx_vni_name ON vault_name_index(name);\n\nCREATE TABLE IF NOT EXISTS vault_health (\n  vault_path      TEXT PRIMARY KEY,\n  inbound_count   INTEGER NOT NULL DEFAULT 0,\n  outbound_count  INTEGER NOT NULL DEFAULT 0,\n  dead_link_count INTEGER NOT NULL DEFAULT 0,\n  is_orphan       INTEGER NOT NULL DEFAULT 0,\n  computed_at     INTEGER NOT NULL\n);\nCREATE INDEX IF NOT EXISTS idx_vh_orphan ON vault_health(is_orphan) WHERE is_orphan = 1;\n`);\n  }\n}\n","/**\n * Database connection helper for the PAI federation DB.\n *\n * Uses better-sqlite3 (synchronous API) to open or create federation.db.\n * On first open it runs the full DDL via initializeFederationSchema().\n */\n\nimport { mkdirSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport BetterSqlite3 from \"better-sqlite3\";\nimport type { Database } from \"better-sqlite3\";\nimport { initializeFederationSchema } from \"./schema.js\";\n\nexport type { Database };\n\n/** Default federation DB path inside the ~/.pai/ directory. */\nconst DEFAULT_FEDERATION_PATH = join(homedir(), \".pai\", \"federation.db\");\n\n/**\n * Open (or create) the PAI federation database.\n *\n * @param path  Absolute path to federation.db.  Defaults to ~/.pai/federation.db.\n * @returns     An open better-sqlite3 Database instance.\n *\n * Side effects on first call:\n *  - Creates the parent directory if it does not exist.\n *  - Enables WAL journal mode.\n *  - Runs initializeFederationSchema() to ensure tables exist.\n */\nexport function openFederation(path: string = DEFAULT_FEDERATION_PATH): Database {\n  // Ensure the directory exists before SQLite tries to create the file\n  mkdirSync(dirname(path), { recursive: true });\n\n  const db = new BetterSqlite3(path);\n\n  // WAL gives better concurrent read performance and crash safety\n  db.pragma(\"journal_mode = WAL\");\n  db.pragma(\"foreign_keys = ON\");\n\n  // Apply schema (idempotent — all statements use IF NOT EXISTS)\n  initializeFederationSchema(db);\n\n  return db;\n}\n"],"mappings":";;;;;;;AA6BA,MAAa,wBAAwB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AA4GrC,SAAgB,2BAA2B,IAAoB;AAC7D,IAAG,KAAK,sBAAsB;AAC9B,eAAc,GAAG;;;;;;;;AAanB,SAAS,cAAc,IAAoB;AAOzC,KAAI,CAJY,GAAG,QAAQ,mCAAmC,CAAC,KAAK,CAGvC,MAAM,MAAM,EAAE,SAAS,YAAY,CAE9D,IAAG,KAAK,sDAAsD;AAIhE,IAAG,KACD,+FACD;AAOD,KAHe,GAAG,QAChB,2EACD,CAAC,KAAK,CACI,WAAW,EACpB,IAAG,KAAK;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAgDV;;;;;;;;;;;;;AC7MF,MAAM,0BAA0B,KAAK,SAAS,EAAE,QAAQ,gBAAgB;;;;;;;;;;;;AAaxE,SAAgB,eAAe,OAAe,yBAAmC;AAE/E,WAAU,QAAQ,KAAK,EAAE,EAAE,WAAW,MAAM,CAAC;CAE7C,MAAM,KAAK,IAAI,cAAc,KAAK;AAGlC,IAAG,OAAO,qBAAqB;AAC/B,IAAG,OAAO,oBAAoB;AAG9B,4BAA2B,GAAG;AAE9B,QAAO"}

package/dist/indexer-CMPOiY1r.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"indexer-CMPOiY1r.mjs","names":[],"sources":["../src/memory/indexer.ts"],"sourcesContent":["/**\n * File indexer for the PAI federation memory engine.\n *\n * Scans project memory/ and Notes/ directories, chunks markdown files, and\n * inserts the resulting chunks into federation.db for BM25 search.\n *\n * Change detection: files whose SHA-256 hash has not changed since the last\n * index run are skipped, keeping incremental re-indexing fast.\n *\n * Phase 2.5: adds embedChunks() for generating vector embeddings on indexed\n * chunks that do not yet have an embedding stored.\n */\n\nimport { createHash } from \"node:crypto\";\nimport { readFileSync, statSync, readdirSync, existsSync } from \"node:fs\";\nimport { join, relative, basename, normalize } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport type { Database } from \"better-sqlite3\";\nimport { chunkMarkdown } from \"./chunker.js\";\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\nexport interface IndexResult {\n  filesProcessed: number;\n  chunksCreated: number;\n  filesSkipped: number;\n}\n\n// ---------------------------------------------------------------------------\n// Tier detection\n// ---------------------------------------------------------------------------\n\n/**\n * Classify a relative file path into one of the four memory tiers.\n *\n * Rules (in priority order):\n *  - MEMORY.md anywhere in memory/  → 'evergreen'\n *  - YYYY-MM-DD.md in memory/       → 'daily'\n *  - anything else in memory/       → 'topic'\n *  - anything in Notes/             → 'session'\n */\nexport function detectTier(\n  relativePath: string,\n): \"evergreen\" | \"daily\" | \"topic\" | \"session\" {\n  // Normalise to forward slashes and strip leading ./\n  const p = relativePath.replace(/\\\\/g, \"/\").replace(/^\\.\\//, \"\");\n\n  // Notes directory → session tier\n  if (p.startsWith(\"Notes/\") || p === \"Notes\") {\n    return \"session\";\n  }\n\n  const fileName = basename(p);\n\n  // MEMORY.md (case-sensitive match) → evergreen\n  if (fileName === \"MEMORY.md\") {\n    return \"evergreen\";\n  }\n\n  // YYYY-MM-DD.md → daily\n  if (/^\\d{4}-\\d{2}-\\d{2}\\.md$/.test(fileName)) {\n    return \"daily\";\n  }\n\n  // Default for memory/ files\n  return \"topic\";\n}\n\n// ---------------------------------------------------------------------------\n// Chunk ID generation\n// ---------------------------------------------------------------------------\n\n/**\n * Generate a deterministic chunk ID from its coordinates.\n * Format: sha256(\"projectId:path:chunkIndex:startLine:endLine\")\n *\n * The chunkIndex (0-based position within the file) is included so that\n * chunks with approximated line numbers (e.g. from splitBySentences) never\n * produce colliding IDs even when multiple chunks share the same startLine/endLine.\n */\nfunction chunkId(\n  projectId: number,\n  path: string,\n  chunkIndex: number,\n  startLine: number,\n  endLine: number,\n): string {\n  return createHash(\"sha256\")\n    .update(`${projectId}:${path}:${chunkIndex}:${startLine}:${endLine}`)\n    .digest(\"hex\");\n}\n\n// ---------------------------------------------------------------------------\n// File hash\n// ---------------------------------------------------------------------------\n\nfunction sha256File(content: string): string {\n  return createHash(\"sha256\").update(content).digest(\"hex\");\n}\n\n// ---------------------------------------------------------------------------\n// Core indexing operations\n// ---------------------------------------------------------------------------\n\n/**\n * Index a single file into the federation database.\n *\n * @returns true if the file was re-indexed (changed or new), false if skipped.\n */\nexport function indexFile(\n  db: Database,\n  projectId: number,\n  rootPath: string,\n  relativePath: string,\n  source: string,\n  tier: string,\n): boolean {\n  const absPath = join(rootPath, relativePath);\n\n  // Read file content\n  let content: string;\n  let stat: ReturnType<typeof statSync>;\n  try {\n    content = readFileSync(absPath, \"utf8\");\n    stat = statSync(absPath);\n  } catch {\n    // File unreadable or missing — skip silently\n    return false;\n  }\n\n  const hash = sha256File(content);\n  const mtime = Math.floor(stat.mtimeMs);\n  const size = stat.size;\n\n  // Check if the file has changed since last index\n  const existing = db\n    .prepare(\n      \"SELECT hash FROM memory_files WHERE project_id = ? AND path = ?\",\n    )\n    .get(projectId, relativePath) as { hash: string } | undefined;\n\n  if (existing?.hash === hash) {\n    // Unchanged — skip\n    return false;\n  }\n\n  // Delete old chunks for this file from both tables\n  const oldChunkIds = db\n    .prepare(\n      \"SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?\",\n    )\n    .all(projectId, relativePath) as Array<{ id: string }>;\n\n  const deleteFts = db.prepare(\"DELETE FROM memory_fts WHERE id = ?\");\n  const deleteChunk = db.prepare(\n    \"DELETE FROM memory_chunks WHERE project_id = ? AND path = ?\",\n  );\n\n  db.transaction(() => {\n    for (const row of oldChunkIds) {\n      deleteFts.run(row.id);\n    }\n    deleteChunk.run(projectId, relativePath);\n  })();\n\n  // Chunk the new content\n  const chunks = chunkMarkdown(content);\n\n  // Insert new chunks into memory_chunks and memory_fts\n  const insertChunk = db.prepare(`\n    INSERT INTO memory_chunks (id, project_id, source, tier, path, start_line, end_line, hash, text, updated_at)\n    VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n  `);\n\n  const insertFts = db.prepare(`\n    INSERT INTO memory_fts (text, id, project_id, path, source, tier, start_line, end_line)\n    VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n  `);\n\n  const upsertFile = db.prepare(`\n    INSERT INTO memory_files (project_id, path, source, tier, hash, mtime, size)\n    VALUES (?, ?, ?, ?, ?, ?, ?)\n    ON CONFLICT(project_id, path) DO UPDATE SET\n      source = excluded.source,\n      tier   = excluded.tier,\n      hash   = excluded.hash,\n      mtime  = excluded.mtime,\n      size   = excluded.size\n  `);\n\n  const updatedAt = Date.now();\n\n  db.transaction(() => {\n    for (let i = 0; i < chunks.length; i++) {\n      const chunk = chunks[i]!;\n      const id = chunkId(projectId, relativePath, i, chunk.startLine, chunk.endLine);\n      insertChunk.run(\n        id,\n        projectId,\n        source,\n        tier,\n        relativePath,\n        chunk.startLine,\n        chunk.endLine,\n        chunk.hash,\n        chunk.text,\n        updatedAt,\n      );\n      insertFts.run(\n        chunk.text,\n        id,\n        projectId,\n        relativePath,\n        source,\n        tier,\n        chunk.startLine,\n        chunk.endLine,\n      );\n    }\n    upsertFile.run(projectId, relativePath, source, tier, hash, mtime, size);\n  })();\n\n  return true;\n}\n\n// ---------------------------------------------------------------------------\n// Directory walker\n// ---------------------------------------------------------------------------\n\n/**\n * Safety cap: maximum number of .md files collected per project scan.\n * Prevents runaway scans on huge root paths (e.g. home directory).\n * Projects with more files than this are scanned up to the cap only.\n */\nconst MAX_FILES_PER_PROJECT = 5_000;\n\n/**\n * Maximum recursion depth for directory walks.\n * Prevents deep traversal of large directory trees (e.g. development repos).\n * Depth 0 = the given directory itself (no recursion).\n * Value 6 allows: root → subdirs → sub-subdirs → ... up to 6 levels.\n * Sufficient for memory/, Notes/, and typical docs structures.\n */\nconst MAX_WALK_DEPTH = 6;\n\n/**\n * Recursively collect all .md files under a directory.\n * Returns absolute paths. Stops early if the accumulated count hits the cap\n * or if the recursion depth exceeds MAX_WALK_DEPTH.\n *\n * @param dir    Directory to scan.\n * @param acc    Shared accumulator array (mutated in place for early exit).\n * @param cap    Maximum number of files to collect (across all recursive calls).\n * @param depth  Current recursion depth (0 = the initial call).\n */\nfunction walkMdFiles(\n  dir: string,\n  acc?: string[],\n  cap = MAX_FILES_PER_PROJECT,\n  depth = 0,\n): string[] {\n  const results = acc ?? [];\n  if (!existsSync(dir)) return results;\n  if (results.length >= cap) return results;\n  if (depth > MAX_WALK_DEPTH) return results;\n\n  try {\n    for (const entry of readdirSync(dir, { withFileTypes: true })) {\n      if (results.length >= cap) break;\n      if (entry.isSymbolicLink()) continue;\n      // Skip known junk directories at every recursion depth\n      if (ALWAYS_SKIP_DIRS.has(entry.name)) continue;\n      const full = join(dir, entry.name);\n      if (entry.isDirectory()) {\n        walkMdFiles(full, results, cap, depth + 1);\n      } else if (entry.isFile() && entry.name.endsWith(\".md\")) {\n        results.push(full);\n      }\n    }\n  } catch {\n    // Unreadable directory — skip\n  }\n  return results;\n}\n\n/**\n * Directories to ALWAYS skip, at any depth, during any directory walk.\n * These are build artifacts, dependency trees, and VCS internals that\n * should never be indexed regardless of where they appear in the tree.\n */\nconst ALWAYS_SKIP_DIRS = new Set([\n  // Version control\n  \".git\",\n  // Dependency directories (any language)\n  \"node_modules\",\n  \"vendor\",\n  \"Pods\",              // CocoaPods (iOS/macOS)\n  // Build / compile output\n  \"dist\",\n  \"build\",\n  \"out\",\n  \"DerivedData\",       // Xcode\n  \".next\",             // Next.js\n  // Python virtual environments and caches\n  \".venv\",\n  \"venv\",\n  \"__pycache__\",\n  // General caches\n  \".cache\",\n  \".bun\",\n]);\n\n/**\n * Directories to skip when doing a root-level content scan.\n * These are either already handled by dedicated scans or should never be indexed.\n */\nconst ROOT_SCAN_SKIP_DIRS = new Set([\n  \"memory\",\n  \"Notes\",\n  \".claude\",\n  \".DS_Store\",\n  // Everything in ALWAYS_SKIP_DIRS is also excluded at root level\n  ...ALWAYS_SKIP_DIRS,\n]);\n\n/**\n * Additional directories to skip at the content-scan level (first level below root).\n * These are common macOS/Linux home-directory or repo noise directories that are\n * never meaningful as project content.\n */\nconst CONTENT_SCAN_SKIP_DIRS = new Set([\n  // macOS home directory standard folders\n  \"Library\",\n  \"Applications\",\n  \"Music\",\n  \"Movies\",\n  \"Pictures\",\n  \"Desktop\",\n  \"Downloads\",\n  \"Public\",\n  // Common dev noise\n  \"coverage\",\n  // Everything in ALWAYS_SKIP_DIRS is also excluded at this level\n  ...ALWAYS_SKIP_DIRS,\n]);\n\n/**\n * Recursively collect all .md files under rootPath, excluding directories\n * that are already covered by dedicated scans (memory/, Notes/) and\n * common noise directories (.git, node_modules, etc.).\n *\n * Returns absolute paths for files NOT already handled by the specific scanners.\n * Stops collecting once MAX_FILES_PER_PROJECT is reached.\n */\nfunction walkContentFiles(rootPath: string): string[] {\n  if (!existsSync(rootPath)) return [];\n\n  const results: string[] = [];\n  try {\n    for (const entry of readdirSync(rootPath, { withFileTypes: true })) {\n      if (results.length >= MAX_FILES_PER_PROJECT) break;\n      if (entry.isSymbolicLink()) continue;\n      if (ROOT_SCAN_SKIP_DIRS.has(entry.name)) continue;\n      if (CONTENT_SCAN_SKIP_DIRS.has(entry.name)) continue;\n\n      const full = join(rootPath, entry.name);\n      if (entry.isDirectory()) {\n        walkMdFiles(full, results, MAX_FILES_PER_PROJECT);\n      } else if (entry.isFile() && entry.name.endsWith(\".md\")) {\n        // Skip root-level MEMORY.md — handled by the dedicated evergreen scan\n        if (entry.name !== \"MEMORY.md\") {\n          results.push(full);\n        }\n      }\n    }\n  } catch {\n    // Unreadable directory — skip\n  }\n  return results;\n}\n\n// ---------------------------------------------------------------------------\n// Project-level indexing\n// ---------------------------------------------------------------------------\n\n/**\n * Index all memory, Notes, and content files for a single registered project.\n *\n * Scans:\n *  - {rootPath}/MEMORY.md    → source='memory', tier='evergreen'\n *  - {rootPath}/memory/      → source='memory', tier from detectTier()\n *  - {rootPath}/Notes/       → source='notes',  tier='session'\n *  - {rootPath}/**\\/\\*.md    → source='content', tier='topic'  (all other .md files, recursive)\n *  - {claudeNotesDir}/       → source='notes',  tier='session'  (if set and different)\n *\n * The content scan covers projects like job-discussions where markdown files\n * live in date/topic subdirectories rather than a memory/ folder.  The\n * memory/, Notes/, .git/, and node_modules/ directories are excluded from\n * the content scan to avoid double-indexing.\n *\n * The claudeNotesDir parameter points to ~/.claude/projects/{encoded}/Notes/\n * where Claude Code writes session notes for a given working directory.\n * It is stored on the project row as claude_notes_dir after a registry scan.\n */\n/**\n * Number of files to process before yielding to the event loop inside\n * indexProject. Keeps IPC responsive even while indexing large projects.\n * Lower = more responsive but more overhead. 10 is a good balance.\n */\nconst INDEX_YIELD_EVERY = 10;\n\n/**\n * Returns true if rootPath should skip the recursive content scan.\n *\n * Skips content scanning for:\n *  - The home directory itself or any ancestor (too broad — millions of files)\n *  - Git repositories (code repos — index memory/ and Notes/ only, not all .md files)\n *\n * The content scan is still useful for Obsidian vaults, Notes folders, and\n * other doc-centric project trees where ALL markdown files are meaningful.\n *\n * The memory/, Notes/, and claude_notes_dir scans always run regardless.\n */\nfunction isPathTooBroadForContentScan(rootPath: string): boolean {\n  const normalized = normalize(rootPath);\n  const home = homedir();\n\n  // Skip the home directory itself or any ancestor of home\n  if (home.startsWith(normalized) || normalized === \"/\") {\n    return true;\n  }\n\n  // Skip home directory itself (depth 0)\n  if (normalized.startsWith(home)) {\n    const rel = normalized.slice(home.length).replace(/^\\//, \"\");\n    const depth = rel ? rel.split(\"/\").length : 0;\n    if (depth === 0) return true;\n  }\n\n  // Skip git repositories — content scan is only for doc-centric projects\n  // (Obsidian vaults, knowledge bases). Code repos use memory/ and Notes/ only.\n  if (existsSync(join(normalized, \".git\"))) {\n    return true;\n  }\n\n  return false;\n}\n\nexport async function indexProject(\n  db: Database,\n  projectId: number,\n  rootPath: string,\n  claudeNotesDir?: string | null,\n): Promise<IndexResult> {\n  const result: IndexResult = {\n    filesProcessed: 0,\n    chunksCreated: 0,\n    filesSkipped: 0,\n  };\n\n  const filesToIndex: Array<{ absPath: string; rootBase: string; source: string; tier: string }> = [];\n\n  // Root-level MEMORY.md\n  const rootMemoryMd = join(rootPath, \"MEMORY.md\");\n  if (existsSync(rootMemoryMd)) {\n    filesToIndex.push({ absPath: rootMemoryMd, rootBase: rootPath, source: \"memory\", tier: \"evergreen\" });\n  }\n\n  // memory/ directory\n  const memoryDir = join(rootPath, \"memory\");\n  for (const absPath of walkMdFiles(memoryDir)) {\n    const relPath = relative(rootPath, absPath);\n    const tier = detectTier(relPath);\n    filesToIndex.push({ absPath, rootBase: rootPath, source: \"memory\", tier });\n  }\n\n  // {rootPath}/Notes/ directory\n  const notesDir = join(rootPath, \"Notes\");\n  for (const absPath of walkMdFiles(notesDir)) {\n    filesToIndex.push({ absPath, rootBase: rootPath, source: \"notes\", tier: \"session\" });\n  }\n\n  // Synthetic session-title chunks for Notes files with the standard filename format:\n  // \"NNNN - YYYY-MM-DD - Descriptive Title.md\"\n  // These are small, high-signal chunks that make session titles searchable via BM25 and embeddings.\n  {\n    const SESSION_TITLE_RE = /^(\\d{4})\\s*-\\s*(\\d{4}-\\d{2}-\\d{2})\\s*-\\s*(.+)\\.md$/;\n    const titleInsertChunk = db.prepare(`\n      INSERT OR IGNORE INTO memory_chunks (id, project_id, source, tier, path, start_line, end_line, hash, text, updated_at)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    const titleInsertFts = db.prepare(`\n      INSERT OR IGNORE INTO memory_fts (text, id, project_id, path, source, tier, start_line, end_line)\n      VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n    `);\n    const updatedAt = Date.now();\n    for (const absPath of walkMdFiles(notesDir)) {\n      const fileName = basename(absPath);\n      const m = SESSION_TITLE_RE.exec(fileName);\n      if (!m) continue;\n      const [, num, date, title] = m;\n      const text = `Session #${num} ${date}: ${title}`;\n      const relPath = relative(rootPath, absPath);\n      const syntheticPath = `${relPath}::title`;\n      const id = chunkId(projectId, syntheticPath, 0, 0, 0);\n      const hash = sha256File(text);\n      db.transaction(() => {\n        titleInsertChunk.run(id, projectId, \"notes\", \"session\", syntheticPath, 0, 0, hash, text, updatedAt);\n        titleInsertFts.run(text, id, projectId, syntheticPath, \"notes\", \"session\", 0, 0);\n      })();\n    }\n  }\n\n  // {rootPath}/**/*.md — all other markdown content (e.g. year/month/topic dirs)\n  // Uses walkContentFiles which skips memory/, Notes/, .git/, node_modules/ etc.\n  // Skip the content scan for paths that are too broad (home dir, filesystem root, etc.)\n  // to avoid runaway directory traversal. Memory and Notes scans above are always safe\n  // because they target specific named subdirectories.\n  if (!isPathTooBroadForContentScan(rootPath)) {\n    for (const absPath of walkContentFiles(rootPath)) {\n      filesToIndex.push({ absPath, rootBase: rootPath, source: \"content\", tier: \"topic\" });\n    }\n  }\n\n  // Claude Code session notes directory (~/.claude/projects/{encoded}/Notes/)\n  // Only scan if it is set, exists, and is not the same path as rootPath/Notes/\n  if (claudeNotesDir && claudeNotesDir !== notesDir) {\n    for (const absPath of walkMdFiles(claudeNotesDir)) {\n      filesToIndex.push({ absPath, rootBase: claudeNotesDir, source: \"notes\", tier: \"session\" });\n    }\n\n    // Synthetic title chunks for claude notes dir\n    {\n      const SESSION_TITLE_RE_CLAUDE = /^(\\d{4})\\s*-\\s*(\\d{4}-\\d{2}-\\d{2})\\s*-\\s*(.+)\\.md$/;\n      const updatedAt = Date.now();\n      const titleInsertChunk2 = db.prepare(`\n        INSERT OR IGNORE INTO memory_chunks (id, project_id, source, tier, path, start_line, end_line, hash, text, updated_at)\n        VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)\n      `);\n      const titleInsertFts2 = db.prepare(`\n        INSERT OR IGNORE INTO memory_fts (text, id, project_id, path, source, tier, start_line, end_line)\n        VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n      `);\n      for (const absPath of walkMdFiles(claudeNotesDir)) {\n        const fileName = basename(absPath);\n        const m = SESSION_TITLE_RE_CLAUDE.exec(fileName);\n        if (!m) continue;\n        const [, num, date, title] = m;\n        const text = `Session #${num} ${date}: ${title}`;\n        const relPath = relative(claudeNotesDir, absPath);\n        const syntheticPath = `${relPath}::title`;\n        const id = chunkId(projectId, syntheticPath, 0, 0, 0);\n        const hash = sha256File(text);\n        db.transaction(() => {\n          titleInsertChunk2.run(id, projectId, \"notes\", \"session\", syntheticPath, 0, 0, hash, text, updatedAt);\n          titleInsertFts2.run(text, id, projectId, syntheticPath, \"notes\", \"session\", 0, 0);\n        })();\n      }\n    }\n\n    // Derive the sibling memory/ directory: .../Notes/ → .../memory/\n    if (claudeNotesDir.endsWith(\"/Notes\")) {\n      const claudeProjectDir = claudeNotesDir.slice(0, -\"/Notes\".length);\n      const claudeMemoryDir = join(claudeProjectDir, \"memory\");\n\n      // MEMORY.md at the Claude Code project dir level (sibling of Notes/)\n      const claudeMemoryMd = join(claudeProjectDir, \"MEMORY.md\");\n      if (existsSync(claudeMemoryMd)) {\n        filesToIndex.push({\n          absPath: claudeMemoryMd,\n          rootBase: claudeProjectDir,\n          source: \"memory\",\n          tier: \"evergreen\",\n        });\n      }\n\n      // memory/ directory sibling of Notes/\n      for (const absPath of walkMdFiles(claudeMemoryDir)) {\n        const relPath = relative(claudeProjectDir, absPath);\n        const tier = detectTier(relPath);\n        filesToIndex.push({ absPath, rootBase: claudeProjectDir, source: \"memory\", tier });\n      }\n    }\n  }\n\n  // Yield after collection phase (which is synchronous) before we start processing\n  await yieldToEventLoop();\n\n  let filesSinceYield = 0;\n\n  for (const { absPath, rootBase, source, tier } of filesToIndex) {\n    // Yield to the event loop periodically so the IPC server stays responsive\n    if (filesSinceYield >= INDEX_YIELD_EVERY) {\n      await yieldToEventLoop();\n      filesSinceYield = 0;\n    }\n    filesSinceYield++;\n\n    const relPath = relative(rootBase, absPath);\n    const changed = indexFile(db, projectId, rootBase, relPath, source, tier);\n\n    if (changed) {\n      // Count chunks created for this file\n      const count = db\n        .prepare(\n          \"SELECT COUNT(*) as n FROM memory_chunks WHERE project_id = ? AND path = ?\",\n        )\n        .get(projectId, relPath) as { n: number };\n\n      result.filesProcessed++;\n      result.chunksCreated += count.n;\n    } else {\n      result.filesSkipped++;\n    }\n  }\n\n  // ---------------------------------------------------------------------------\n  // Prune stale paths: remove DB entries for files that no longer exist on disk.\n  // This handles renames, moves, and deletions — the indexer only adds/updates,\n  // so without pruning, old paths accumulate forever.\n  // ---------------------------------------------------------------------------\n\n  const livePaths = new Set<string>();\n  for (const { absPath, rootBase } of filesToIndex) {\n    livePaths.add(relative(rootBase, absPath));\n  }\n\n  // Query all distinct paths in memory_chunks for this project\n  const dbChunkPaths = db\n    .prepare(\"SELECT DISTINCT path FROM memory_chunks WHERE project_id = ?\")\n    .all(projectId) as Array<{ path: string }>;\n\n  const stalePaths: string[] = [];\n  for (const row of dbChunkPaths) {\n    // Synthetic title paths (ending in \"::title\") are live if their base file is live\n    const basePath = row.path.endsWith(\"::title\")\n      ? row.path.slice(0, -\"::title\".length)\n      : row.path;\n    if (!livePaths.has(basePath)) {\n      stalePaths.push(row.path);\n    }\n  }\n\n  if (stalePaths.length > 0) {\n    const deleteChunksFts = db.prepare(\"DELETE FROM memory_fts WHERE id = ?\");\n    const deleteChunks = db.prepare(\n      \"DELETE FROM memory_chunks WHERE project_id = ? AND path = ?\",\n    );\n    const deleteFile = db.prepare(\n      \"DELETE FROM memory_files WHERE project_id = ? AND path = ?\",\n    );\n\n    db.transaction(() => {\n      for (const stalePath of stalePaths) {\n        const chunkIds = db\n          .prepare(\"SELECT id FROM memory_chunks WHERE project_id = ? AND path = ?\")\n          .all(projectId, stalePath) as Array<{ id: string }>;\n        for (const { id } of chunkIds) {\n          deleteChunksFts.run(id);\n        }\n        deleteChunks.run(projectId, stalePath);\n        deleteFile.run(projectId, stalePath);\n      }\n    })();\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// Global indexing (all registered projects)\n// ---------------------------------------------------------------------------\n\n/**\n * Yield to the Node.js event loop between projects so the IPC server\n * remains responsive during long index runs.\n */\nfunction yieldToEventLoop(): Promise<void> {\n  return new Promise((resolve) => setImmediate(resolve));\n}\n\n/**\n * Index all active projects registered in the registry DB.\n *\n * Async: yields to the event loop between each project so that the daemon's\n * Unix socket server can process IPC requests (e.g. status) while indexing.\n */\nexport async function indexAll(\n  db: Database,\n  registryDb: Database,\n): Promise<{ projects: number; result: IndexResult }> {\n  const projects = registryDb\n    .prepare(\"SELECT id, root_path, claude_notes_dir FROM projects WHERE status = 'active'\")\n    .all() as Array<{ id: number; root_path: string; claude_notes_dir: string | null }>;\n\n  const totals: IndexResult = {\n    filesProcessed: 0,\n    chunksCreated: 0,\n    filesSkipped: 0,\n  };\n\n  for (const project of projects) {\n    // Yield before each project so the event loop can drain IPC requests\n    await yieldToEventLoop();\n\n    const r = await indexProject(db, project.id, project.root_path, project.claude_notes_dir);\n    totals.filesProcessed += r.filesProcessed;\n    totals.chunksCreated += r.chunksCreated;\n    totals.filesSkipped += r.filesSkipped;\n  }\n\n  return { projects: projects.length, result: totals };\n}\n\n// ---------------------------------------------------------------------------\n// Embedding generation\n// ---------------------------------------------------------------------------\n\nexport interface EmbedResult {\n  chunksEmbedded: number;\n  chunksSkipped: number;\n}\n\n/**\n * Generate and store embeddings for chunks that do not yet have one.\n *\n * Because better-sqlite3 is synchronous but the embedding pipeline is async,\n * we fetch all unembedded chunk texts first, generate embeddings in batches,\n * and then write them back in a transaction.\n *\n * @param db         Open federation database.\n * @param projectId  Optional — restrict to a specific project.\n * @param batchSize  Number of chunks to embed per round. Default 50.\n * @param onProgress Optional callback called after each batch with running totals.\n */\nexport async function embedChunks(\n  db: Database,\n  projectId?: number,\n  batchSize = 50,\n  onProgress?: (embedded: number, total: number) => void,\n): Promise<EmbedResult> {\n  // Dynamic import — keeps the heavy ML runtime out of the module load path\n  const { generateEmbedding, serializeEmbedding } = await import(\"./embeddings.js\");\n\n  const conditions = [\"embedding IS NULL\"];\n  const params: (string | number)[] = [];\n\n  if (projectId !== undefined) {\n    conditions.push(\"project_id = ?\");\n    params.push(projectId);\n  }\n\n  const where = \"WHERE \" + conditions.join(\" AND \");\n\n  const rows = db\n    .prepare(`SELECT id, text FROM memory_chunks ${where} ORDER BY id`)\n    .all(...params) as Array<{ id: string; text: string }>;\n\n  if (rows.length === 0) {\n    return { chunksEmbedded: 0, chunksSkipped: 0 };\n  }\n\n  const updateStmt = db.prepare(\n    \"UPDATE memory_chunks SET embedding = ? 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package/dist/indexer-backend-CIMXedqk.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"indexer-backend-CIMXedqk.mjs","names":[],"sources":["../src/memory/indexer-backend.ts"],"sourcesContent":["/**\n * Backend-aware indexer for PAI federation memory.\n *\n * This module provides the same functionality as indexer.ts but writes\n * through the StorageBackend interface instead of directly to better-sqlite3.\n * Used when the daemon is configured with the Postgres backend.\n *\n * The SQLite path still uses indexer.ts directly (which is faster for SQLite\n * due to synchronous transactions).\n */\n\nimport { createHash } from \"node:crypto\";\nimport { readFileSync, statSync, readdirSync, existsSync } from \"node:fs\";\nimport { join, relative, basename, normalize } from \"node:path\";\n\n// ---------------------------------------------------------------------------\n// Session title parsing\n// ---------------------------------------------------------------------------\n\nconst SESSION_TITLE_RE = /^(\\d{4})\\s*-\\s*(\\d{4}-\\d{2}-\\d{2})\\s*-\\s*(.+)\\.md$/;\n\n/**\n * Parse a session title from a Notes filename.\n * Format: \"NNNN - YYYY-MM-DD - Descriptive Title.md\"\n * Returns a synthetic chunk text like \"Session #0086 2026-02-23: Pai Daemon Background Service\"\n * or null if the filename doesn't match the expected pattern.\n */\nexport function parseSessionTitleChunk(fileName: string): string | null {\n  const m = SESSION_TITLE_RE.exec(fileName);\n  if (!m) return null;\n  const [, num, date, title] = m;\n  return `Session #${num} ${date}: ${title}`;\n}\nimport { homedir } from \"node:os\";\nimport type { Database } from \"better-sqlite3\";\nimport type { StorageBackend, ChunkRow } from \"../storage/interface.js\";\nimport type { IndexResult } from \"./indexer.js\";\nimport { chunkMarkdown } from \"./chunker.js\";\nimport { detectTier } from \"./indexer.js\";\n\n// ---------------------------------------------------------------------------\n// Constants (mirrored from indexer.ts)\n// ---------------------------------------------------------------------------\n\nconst MAX_FILES_PER_PROJECT = 5_000;\nconst MAX_WALK_DEPTH = 6;\nconst INDEX_YIELD_EVERY = 10;\n\n/**\n * Directories to ALWAYS skip, at any depth, during any directory walk.\n * These are build artifacts, dependency trees, and VCS internals that\n * should never be indexed regardless of where they appear in the tree.\n */\nconst ALWAYS_SKIP_DIRS = new Set([\n  // Version control\n  \".git\",\n  // Dependency directories (any language)\n  \"node_modules\",\n  \"vendor\",\n  \"Pods\",              // CocoaPods (iOS/macOS)\n  // Build / compile output\n  \"dist\",\n  \"build\",\n  \"out\",\n  \"DerivedData\",       // Xcode\n  \".next\",             // Next.js\n  // Python virtual environments and caches\n  \".venv\",\n  \"venv\",\n  \"__pycache__\",\n  // General caches\n  \".cache\",\n  \".bun\",\n]);\n\nconst ROOT_SCAN_SKIP_DIRS = new Set([\n  \"memory\", \"Notes\", \".claude\", \".DS_Store\",\n  ...ALWAYS_SKIP_DIRS,\n]);\n\nconst CONTENT_SCAN_SKIP_DIRS = new Set([\n  \"Library\", \"Applications\", \"Music\", \"Movies\", \"Pictures\", \"Desktop\",\n  \"Downloads\", \"Public\", \"coverage\",\n  ...ALWAYS_SKIP_DIRS,\n]);\n\n// ---------------------------------------------------------------------------\n// Helpers (same logic as indexer.ts)\n// ---------------------------------------------------------------------------\n\nfunction sha256File(content: string): string {\n  return createHash(\"sha256\").update(content).digest(\"hex\");\n}\n\nfunction chunkId(\n  projectId: number,\n  path: string,\n  chunkIndex: number,\n  startLine: number,\n  endLine: number,\n): string {\n  return createHash(\"sha256\")\n    .update(`${projectId}:${path}:${chunkIndex}:${startLine}:${endLine}`)\n    .digest(\"hex\");\n}\n\nfunction walkMdFiles(\n  dir: string,\n  acc?: string[],\n  cap = MAX_FILES_PER_PROJECT,\n  depth = 0,\n): string[] {\n  const results = acc ?? [];\n  if (!existsSync(dir)) return results;\n  if (results.length >= cap) return results;\n  if (depth > MAX_WALK_DEPTH) return results;\n  try {\n    for (const entry of readdirSync(dir, { withFileTypes: true })) {\n      if (results.length >= cap) break;\n      if (entry.isSymbolicLink()) continue;\n      // Skip known junk directories at every recursion depth\n      if (ALWAYS_SKIP_DIRS.has(entry.name)) continue;\n      const full = join(dir, entry.name);\n      if (entry.isDirectory()) {\n        walkMdFiles(full, results, cap, depth + 1);\n      } else if (entry.isFile() && entry.name.endsWith(\".md\")) {\n        results.push(full);\n      }\n    }\n  } catch { /* skip unreadable */ }\n  return results;\n}\n\nfunction walkContentFiles(rootPath: string): string[] {\n  if (!existsSync(rootPath)) return [];\n  const results: string[] = [];\n  try {\n    for (const entry of readdirSync(rootPath, { withFileTypes: true })) {\n      if (results.length >= MAX_FILES_PER_PROJECT) break;\n      if (entry.isSymbolicLink()) continue;\n      if (ROOT_SCAN_SKIP_DIRS.has(entry.name)) continue;\n      if (CONTENT_SCAN_SKIP_DIRS.has(entry.name)) continue;\n      const full = join(rootPath, entry.name);\n      if (entry.isDirectory()) {\n        walkMdFiles(full, results, MAX_FILES_PER_PROJECT);\n      } else if (entry.isFile() && entry.name.endsWith(\".md\")) {\n        if (entry.name !== \"MEMORY.md\") results.push(full);\n      }\n    }\n  } catch { /* skip */ }\n  return results;\n}\n\nfunction isPathTooBroadForContentScan(rootPath: string): boolean {\n  const normalized = normalize(rootPath);\n  const home = homedir();\n  if (home.startsWith(normalized) || normalized === \"/\") return true;\n  if (normalized.startsWith(home)) {\n    const rel = normalized.slice(home.length).replace(/^\\//, \"\");\n    const depth = rel ? rel.split(\"/\").length : 0;\n    if (depth === 0) return true;\n  }\n  if (existsSync(join(normalized, \".git\"))) return true;\n  return false;\n}\n\nfunction yieldToEventLoop(): Promise<void> {\n  return new Promise((resolve) => setImmediate(resolve));\n}\n\n// ---------------------------------------------------------------------------\n// File indexing via StorageBackend\n// ---------------------------------------------------------------------------\n\n/**\n * Index a single file through the StorageBackend interface.\n * Returns true if the file was re-indexed (changed or new), false if skipped.\n */\nexport async function indexFileWithBackend(\n  backend: StorageBackend,\n  projectId: number,\n  rootPath: string,\n  relativePath: string,\n  source: string,\n  tier: string,\n): Promise<boolean> {\n  const absPath = join(rootPath, relativePath);\n\n  let content: string;\n  let stat: ReturnType<typeof statSync>;\n  try {\n    content = readFileSync(absPath, \"utf8\");\n    stat = statSync(absPath);\n  } catch {\n    return false;\n  }\n\n  const hash = sha256File(content);\n  const mtime = Math.floor(stat.mtimeMs);\n  const size = stat.size;\n\n  // Change detection\n  const existingHash = await backend.getFileHash(projectId, relativePath);\n  if (existingHash === hash) return false;\n\n  // Delete old chunks\n  await backend.deleteChunksForFile(projectId, relativePath);\n\n  // Chunk the content\n  const rawChunks = chunkMarkdown(content);\n  const updatedAt = Date.now();\n\n  const chunks: ChunkRow[] = rawChunks.map((c, i) => ({\n    id: chunkId(projectId, relativePath, i, c.startLine, c.endLine),\n    projectId,\n    source,\n    tier,\n    path: relativePath,\n    startLine: c.startLine,\n    endLine: c.endLine,\n    hash: c.hash,\n    text: c.text,\n    updatedAt,\n    embedding: null,\n  }));\n\n  // Insert chunks + update file record\n  await backend.insertChunks(chunks);\n  await backend.upsertFile({ projectId, path: relativePath, source, tier, hash, mtime, size });\n\n  return true;\n}\n\n// ---------------------------------------------------------------------------\n// Project-level indexing via StorageBackend\n// ---------------------------------------------------------------------------\n\nexport async function indexProjectWithBackend(\n  backend: StorageBackend,\n  projectId: number,\n  rootPath: string,\n  claudeNotesDir?: string | null,\n): Promise<IndexResult> {\n  const result: IndexResult = { filesProcessed: 0, chunksCreated: 0, filesSkipped: 0 };\n\n  const filesToIndex: Array<{ absPath: string; rootBase: string; source: string; tier: string }> = [];\n\n  const rootMemoryMd = join(rootPath, \"MEMORY.md\");\n  if (existsSync(rootMemoryMd)) {\n    filesToIndex.push({ absPath: rootMemoryMd, rootBase: rootPath, source: \"memory\", tier: \"evergreen\" });\n  }\n\n  const memoryDir = join(rootPath, \"memory\");\n  for (const absPath of walkMdFiles(memoryDir)) {\n    const relPath = relative(rootPath, absPath);\n    const tier = detectTier(relPath);\n    filesToIndex.push({ absPath, rootBase: rootPath, source: \"memory\", tier });\n  }\n\n  const notesDir = join(rootPath, \"Notes\");\n  for (const absPath of walkMdFiles(notesDir)) {\n    filesToIndex.push({ absPath, rootBase: rootPath, source: \"notes\", tier: \"session\" });\n  }\n\n  // Synthetic session-title chunks: parse titles from Notes filenames and insert\n  // as high-signal chunks so session names are searchable via BM25 and embeddings.\n  {\n    const updatedAt = Date.now();\n    for (const absPath of walkMdFiles(notesDir)) {\n      const fileName = basename(absPath);\n      const text = parseSessionTitleChunk(fileName);\n      if (!text) continue;\n      const relPath = relative(rootPath, absPath);\n      const syntheticPath = `${relPath}::title`;\n      const id = chunkId(projectId, syntheticPath, 0, 0, 0);\n      const hash = sha256File(text);\n      const titleChunk: import(\"../storage/interface.js\").ChunkRow = {\n        id, projectId, source: \"notes\", tier: \"session\",\n        path: syntheticPath, startLine: 0, endLine: 0,\n        hash, text, updatedAt, embedding: null,\n      };\n      try {\n        await backend.insertChunks([titleChunk]);\n      } catch {\n        // Skip title chunks that cause backend errors\n      }\n    }\n  }\n\n  if (!isPathTooBroadForContentScan(rootPath)) {\n    for (const absPath of walkContentFiles(rootPath)) {\n      filesToIndex.push({ absPath, rootBase: rootPath, source: \"content\", tier: \"topic\" });\n    }\n  }\n\n  if (claudeNotesDir && claudeNotesDir !== notesDir) {\n    for (const absPath of walkMdFiles(claudeNotesDir)) {\n      filesToIndex.push({ absPath, rootBase: claudeNotesDir, source: \"notes\", tier: \"session\" });\n    }\n\n    // Synthetic title chunks for claude notes dir\n    {\n      const updatedAt = Date.now();\n      for (const absPath of walkMdFiles(claudeNotesDir)) {\n        const fileName = basename(absPath);\n        const text = parseSessionTitleChunk(fileName);\n        if (!text) continue;\n        const relPath = relative(claudeNotesDir, absPath);\n        const syntheticPath = `${relPath}::title`;\n        const id = chunkId(projectId, syntheticPath, 0, 0, 0);\n        const hash = sha256File(text);\n        const titleChunk: import(\"../storage/interface.js\").ChunkRow = {\n          id, projectId, source: \"notes\", tier: \"session\",\n          path: syntheticPath, startLine: 0, endLine: 0,\n          hash, text, updatedAt, embedding: null,\n        };\n        try {\n          await backend.insertChunks([titleChunk]);\n        } catch {\n          // Skip title chunks that cause backend errors\n        }\n      }\n    }\n\n    if (claudeNotesDir.endsWith(\"/Notes\")) {\n      const claudeProjectDir = claudeNotesDir.slice(0, -\"/Notes\".length);\n      const claudeMemoryMd = join(claudeProjectDir, \"MEMORY.md\");\n      if (existsSync(claudeMemoryMd)) {\n        filesToIndex.push({ absPath: claudeMemoryMd, rootBase: claudeProjectDir, source: \"memory\", tier: \"evergreen\" });\n      }\n      const claudeMemoryDir = join(claudeProjectDir, \"memory\");\n      for (const absPath of walkMdFiles(claudeMemoryDir)) {\n        const relPath = relative(claudeProjectDir, absPath);\n        const tier = detectTier(relPath);\n        filesToIndex.push({ absPath, rootBase: claudeProjectDir, source: \"memory\", tier });\n      }\n    }\n  }\n\n  await yieldToEventLoop();\n\n  let filesSinceYield = 0;\n\n  for (const { absPath, rootBase, source, tier } of filesToIndex) {\n    if (filesSinceYield >= INDEX_YIELD_EVERY) {\n      await yieldToEventLoop();\n      filesSinceYield = 0;\n    }\n    filesSinceYield++;\n\n    const relPath = relative(rootBase, absPath);\n    try {\n      const changed = await indexFileWithBackend(backend, projectId, rootBase, relPath, source, tier);\n\n      if (changed) {\n        // Count chunks — we know we just inserted them, count from the chunk IDs\n        const ids = await backend.getChunkIds(projectId, relPath);\n        result.filesProcessed++;\n        result.chunksCreated += ids.length;\n      } else {\n        result.filesSkipped++;\n      }\n    } catch {\n      // Skip files that cause backend errors (e.g. null bytes in Postgres)\n      result.filesSkipped++;\n    }\n  }\n\n  // ---------------------------------------------------------------------------\n  // Prune stale paths: remove DB entries for files that no longer exist on disk.\n  // This handles renames, moves, and deletions — the indexer only adds/updates,\n  // so without pruning, old paths accumulate forever.\n  // ---------------------------------------------------------------------------\n\n  const livePaths = new Set<string>();\n  for (const { absPath, rootBase } of filesToIndex) {\n    livePaths.add(relative(rootBase, absPath));\n  }\n\n  const dbChunkPaths = await backend.getDistinctChunkPaths(projectId);\n\n  const stalePaths: string[] = [];\n  for (const p of dbChunkPaths) {\n    const basePath = p.endsWith(\"::title\") ? p.slice(0, -\"::title\".length) : p;\n    if (!livePaths.has(basePath)) {\n      stalePaths.push(p);\n    }\n  }\n\n  if (stalePaths.length > 0) {\n    await backend.deletePaths(projectId, stalePaths);\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// Embedding generation via StorageBackend\n// ---------------------------------------------------------------------------\n\nconst EMBED_BATCH_SIZE = 50;\nconst EMBED_YIELD_EVERY = 10;\n\n/**\n * Generate and store embeddings for all unembedded chunks via the StorageBackend.\n *\n * Processes chunks in batches of EMBED_BATCH_SIZE, yielding to the event loop\n * every EMBED_YIELD_EVERY chunks to avoid blocking IPC calls from MCP shims.\n *\n * The optional `shouldStop` callback is checked between every batch. When it\n * returns true the embed loop exits early so the caller (e.g. the daemon\n * shutdown handler) can close the pool without racing against active queries.\n *\n * Returns the number of newly embedded chunks.\n */\nexport async function embedChunksWithBackend(\n  backend: StorageBackend,\n  shouldStop?: () => boolean,\n): Promise<number> {\n  const { generateEmbedding, serializeEmbedding } = await import(\"./embeddings.js\");\n\n  const rows = await backend.getUnembeddedChunkIds();\n  if (rows.length === 0) return 0;\n\n  const total = rows.length;\n  let embedded = 0;\n\n  for (let i = 0; i < rows.length; i += EMBED_BATCH_SIZE) {\n    // Check cancellation between every batch before touching the pool again\n    if (shouldStop?.()) {\n      process.stderr.write(\n        `[pai-daemon] Embed pass cancelled after ${embedded}/${total} chunks (shutdown requested)\\n`\n      );\n      break;\n    }\n\n    const batch = rows.slice(i, i + EMBED_BATCH_SIZE);\n\n    for (let j = 0; j < batch.length; j++) {\n      const { id, text } = batch[j];\n\n      // Yield to the event loop periodically to keep IPC responsive\n      if ((embedded + j) % EMBED_YIELD_EVERY === 0) {\n        await yieldToEventLoop();\n      }\n\n      const vec = await generateEmbedding(text);\n      const blob = serializeEmbedding(vec);\n      await backend.updateEmbedding(id, blob);\n    }\n\n    embedded += batch.length;\n    process.stderr.write(\n      `[pai-daemon] Embedded ${embedded}/${total} chunks\\n`\n    );\n  }\n\n  return embedded;\n}\n\n// ---------------------------------------------------------------------------\n// Global indexing via StorageBackend\n// ---------------------------------------------------------------------------\n\nexport async function indexAllWithBackend(\n  backend: StorageBackend,\n  registryDb: Database,\n): Promise<{ projects: number; result: IndexResult }> {\n  const projects = registryDb\n    .prepare(\"SELECT id, root_path, claude_notes_dir FROM projects WHERE status = 'active'\")\n    .all() as Array<{ id: number; root_path: string; claude_notes_dir: string | null }>;\n\n  const totals: IndexResult = { filesProcessed: 0, chunksCreated: 0, filesSkipped: 0 };\n\n  for (const project of projects) {\n    await yieldToEventLoop();\n    const r = await indexProjectWithBackend(backend, project.id, project.root_path, project.claude_notes_dir);\n    totals.filesProcessed += r.filesProcessed;\n    totals.chunksCreated += r.chunksCreated;\n    totals.filesSkipped += r.filesSkipped;\n  }\n\n  return { projects: projects.length, result: totals 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package/dist/mcp/index.d.mts

@@ -1 +0,0 @@
-export { };