@tekmidian/pai 0.16.0 → 0.17.0

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Files changed (123) hide show
  1. package/README.md +11 -3
  2. package/dist/auto-route-DkIRampF.mjs +86 -0
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  4. package/dist/checkpoint-block-Bl0HD3U2.mjs.map +1 -1
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  11. package/dist/cli/index.mjs +6 -6
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  14. package/dist/daemon/index.mjs +9 -9
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  31. package/dist/detector-Bwzm3E_x.mjs +74 -0
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  39. package/dist/hooks/context-compression-hook.mjs +36 -4
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  41. package/dist/hooks/load-project-context.mjs +188 -6
  42. package/dist/hooks/load-project-context.mjs.map +4 -4
  43. package/dist/hooks/stop-hook.mjs +36 -4
  44. package/dist/hooks/stop-hook.mjs.map +3 -3
  45. package/dist/index.mjs +3 -3
  46. package/dist/indexer-backend-BmaS2VcD.mjs +299 -0
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  52. package/dist/latent-ideas-BwM3WdBp.mjs +191 -0
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  90. package/dist/search-CpTv1I24.mjs +298 -0
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  92. package/dist/skills/Pause/SKILL.md +11 -4
  93. package/dist/sqlite-CZ0LFili.mjs +271 -0
  94. package/dist/sqlite-CZ0LFili.mjs.map +1 -0
  95. package/dist/sqlite-Nw8ZW5Rj.mjs +271 -0
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  99. package/dist/themes-BBOlGXAg.mjs +148 -0
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  101. package/dist/tools-B6BmaAvz.mjs +1939 -0
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  105. package/dist/work-queue-worker-BoHIH70K.mjs +1856 -0
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  113. package/dist/zettelkasten-D0N_A_OE.mjs +1063 -0
  114. package/dist/zettelkasten-D0N_A_OE.mjs.map +1 -0
  115. package/docs/commands/README.md +2 -1
  116. package/docs/commands/pause.md +1 -1
  117. package/docs/commands/session.md +27 -3
  118. package/package.json +1 -1
  119. package/plugins/context-preservation/hooks/hooks.json +12 -1
  120. package/scripts/build-hooks.mjs +1 -0
  121. package/src/hooks/session-autosave.sh +69 -0
  122. package/src/hooks/session-stop.sh +32 -1
  123. package/src/hooks/ts/session-start/load-project-context.ts +44 -0
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+ {"version":3,"file":"checkpoint-block-C05sK_HK.mjs","names":[],"sources":["../src/cli/commands/registry/utils.ts","../src/cli/commands/registry/scan.ts","../src/daemon/templates/triple-extraction-prompt.ts","../src/memory/kg-extraction.ts","../src/session/checkpoint-block.ts"],"sourcesContent":["/** Shared database helpers for registry command operations. */\n\nimport type { Database } from \"better-sqlite3\";\nimport { now } from \"../../utils.js\";\nimport { basename } from \"node:path\";\n\n/**\n * Upsert a project row. Returns { id, isNew }.\n *\n * Matching priority:\n * 1. root_path — most reliable; handles slug collisions\n * 2. encoded_dir — Claude project dirs are canonical\n * 3. Insert with suffix-deduplication on slug collision\n *\n * display_name is set to basename(rootPath) on INSERT so that the unified\n * listing always shows a human-readable name rather than the kebab-case slug.\n */\nexport function upsertProject(\n db: Database,\n slug: string,\n rootPath: string,\n encodedDir: string\n): { id: number; isNew: boolean } {\n const ts = now();\n\n const byPath = db\n .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n .get(rootPath) as { id: number } | undefined;\n\n if (byPath) {\n const encodedOwner = db\n .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n .get(encodedDir) as { id: number } | undefined;\n\n if (!encodedOwner || encodedOwner.id === byPath.id) {\n db.prepare(\n \"UPDATE projects SET encoded_dir = ?, updated_at = ? WHERE id = ?\"\n ).run(encodedDir, ts, byPath.id);\n }\n return { id: byPath.id, isNew: false };\n }\n\n const byEncoded = db\n .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n .get(encodedDir) as { id: number } | undefined;\n\n if (byEncoded) {\n const pathOwner = db\n .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n .get(rootPath) as { id: number } | undefined;\n\n if (!pathOwner || pathOwner.id === byEncoded.id) {\n db.prepare(\n \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n ).run(rootPath, ts, byEncoded.id);\n }\n return { id: byEncoded.id, isNew: false };\n }\n\n // Insert — deduplicate slug with numeric suffix if needed.\n let finalSlug = slug;\n let attempt = 0;\n while (true) {\n const conflict = db\n .prepare(\"SELECT id FROM projects WHERE slug = ?\")\n .get(finalSlug) as { id: number } | undefined;\n if (!conflict) break;\n attempt++;\n finalSlug = `${slug}-${attempt}`;\n }\n\n // Use basename(rootPath) as the human display name. If rootPath is empty or\n // just \"/\" fall back to the slug so we always have something non-empty.\n const displayName = basename(rootPath) || finalSlug;\n\n const result = db\n .prepare(\n `INSERT OR IGNORE INTO projects\n (slug, display_name, root_path, encoded_dir, type, status, created_at, updated_at)\n VALUES (?, ?, ?, ?, 'local', 'active', ?, ?)`\n )\n .run(finalSlug, displayName, rootPath, encodedDir, ts, ts);\n\n if (result.changes === 0) {\n const fallback =\n (db.prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\").get(encodedDir) as { id: number } | undefined) ??\n (db.prepare(\"SELECT id FROM projects WHERE root_path = ?\").get(rootPath) as { id: number } | undefined);\n\n if (fallback) {\n return { id: fallback.id, isNew: false };\n }\n\n throw new Error(\n `upsertProject: INSERT OR IGNORE was suppressed but no matching row found ` +\n `for root_path=${rootPath} encoded_dir=${encodedDir}`\n );\n }\n\n return { id: result.lastInsertRowid as number, isNew: true };\n}\n\n/** Upsert a session note. Returns true if newly inserted. */\nexport function upsertSession(\n db: Database,\n projectId: number,\n number: number,\n date: string,\n slug: string,\n title: string,\n filename: string\n): boolean {\n const existing = db\n .prepare(\"SELECT id FROM sessions WHERE project_id = ? AND number = ?\")\n .get(projectId, number);\n\n if (existing) return false;\n\n const ts = now();\n db.prepare(\n `INSERT INTO sessions\n (project_id, number, date, slug, title, filename, status, created_at)\n VALUES (?, ?, ?, ?, ?, ?, 'completed', ?)`\n ).run(projectId, number, date, slug, title, filename, ts);\n\n return true;\n}\n","/** Registry scan command: walk ~/.claude/projects/ and populate the registry. */\n\nimport { existsSync, readdirSync, statSync, readFileSync, writeFileSync, mkdirSync } from \"node:fs\";\nimport { realpathSync } from \"node:fs\";\nimport { join, basename, resolve } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport { ok, warn, err, dim, bold } from \"../../utils.js\";\nimport { encodeDir } from \"../../utils.js\";\nimport { decodeEncodedDir, slugify, parseSessionFilename, buildEncodedDirMap } from \"../../../registry/migrate.js\";\nimport { ensurePaiMarker, discoverPaiMarkers } from \"../../../registry/pai-marker.js\";\nimport { upsertProject, upsertSession } from \"./utils.js\";\nimport type { Database } from \"better-sqlite3\";\n\n// ---------------------------------------------------------------------------\n// clc session.json fallback map\n// ---------------------------------------------------------------------------\n\n/**\n * Build a reverse map from encoded-dir → real path using the clc session\n * registry (~/.claude/session.json).\n *\n * The clc registry stores { sessions: [{ directory, ... }, ...] }. For each\n * entry with a resolvable directory, we encode the realpath and add it to\n * the map. This lets the scanner recover project paths that are not in\n * Claude's session-registry.json but were registered by clc.\n */\nfunction buildClcDirMap(): Map<string, string> {\n const map = new Map<string, string>();\n const sessionFile = join(homedir(), \".claude\", \"session.json\");\n if (!existsSync(sessionFile)) return map;\n\n try {\n const raw = readFileSync(sessionFile, \"utf8\");\n const parsed = JSON.parse(raw) as { sessions?: Array<{ directory?: string }> };\n for (const entry of parsed.sessions ?? []) {\n const dir = entry.directory;\n if (!dir) continue;\n try {\n const real = realpathSync(dir);\n if (!existsSync(real)) continue;\n const encoded = encodeDir(real);\n map.set(encoded, real);\n } catch {\n // Unresolvable path — skip\n }\n }\n } catch {\n // Unparseable — return empty map\n }\n return map;\n}\n\n// ---------------------------------------------------------------------------\n// Config helpers\n// ---------------------------------------------------------------------------\n\nconst CLAUDE_PROJECTS_DIR = join(homedir(), \".claude\", \"projects\");\nconst PAI_CONFIG_DIR = join(homedir(), \".pai\");\nconst PAI_CONFIG_FILE = join(PAI_CONFIG_DIR, \"config.json\");\n\ninterface PaiConfig {\n scan_dirs: string[];\n}\n\nexport function loadScanConfig(): PaiConfig {\n if (!existsSync(PAI_CONFIG_FILE)) return { scan_dirs: [] };\n try {\n return JSON.parse(readFileSync(PAI_CONFIG_FILE, \"utf8\")) as PaiConfig;\n } catch {\n return { scan_dirs: [] };\n }\n}\n\nexport function saveScanConfig(config: PaiConfig): void {\n mkdirSync(PAI_CONFIG_DIR, { recursive: true });\n writeFileSync(PAI_CONFIG_FILE, JSON.stringify(config, null, 2) + \"\\n\", \"utf8\");\n}\n\n/**\n * Resolve a path to its canonical form, falling back to the input.\n *\n * Every path that becomes a `projects.root_path` must go through this. That\n * column is UNIQUE, so two spellings of one directory create two projects and\n * split session history between them. The spellings are not hypothetical: a\n * configured scan_dir of `~/dev/ai` (where `~/dev` is a symlink) makes every\n * project under it register under the symlinked path, while a session started\n * from the resolved path registers a rival row.\n */\nexport function canonicalPath(p: string): string {\n try {\n return realpathSync(p);\n } catch {\n return p;\n }\n}\n\nexport function resolveHome(p: string): string {\n if (p.startsWith(\"~/\")) return join(homedir(), p.slice(2));\n return resolve(p);\n}\n\n// ---------------------------------------------------------------------------\n// File discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Recursively find all .md files in a directory, including YYYY/MM subdirectories.\n * Returns filenames (basename only).\n */\nexport function findNoteFiles(dir: string): string[] {\n const results: string[] = [];\n if (!existsSync(dir)) return results;\n\n for (const entry of readdirSync(dir, { withFileTypes: true })) {\n if (entry.isFile() && entry.name.endsWith(\".md\")) {\n results.push(entry.name);\n } else if (entry.isDirectory() && /^\\d{4}$/.test(entry.name)) {\n const yearDir = join(dir, entry.name);\n for (const monthEntry of readdirSync(yearDir, { withFileTypes: true })) {\n if (monthEntry.isDirectory() && /^\\d{2}$/.test(monthEntry.name)) {\n const monthDir = join(yearDir, monthEntry.name);\n for (const noteEntry of readdirSync(monthDir, { withFileTypes: true })) {\n if (noteEntry.isFile() && noteEntry.name.endsWith(\".md\")) {\n results.push(noteEntry.name);\n }\n }\n }\n }\n }\n }\n return results;\n}\n\n// ---------------------------------------------------------------------------\n// Scan result type\n// ---------------------------------------------------------------------------\n\nexport interface ScanResult {\n projectsScanned: number;\n projectsNew: number;\n projectsUpdated: number;\n sessionsScanned: number;\n sessionsNew: number;\n skipped: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Core scan logic\n// ---------------------------------------------------------------------------\n\nexport function performScan(db: Database): ScanResult {\n const result: ScanResult = {\n projectsScanned: 0,\n projectsNew: 0,\n projectsUpdated: 0,\n sessionsScanned: 0,\n sessionsNew: 0,\n skipped: [],\n };\n\n if (!existsSync(CLAUDE_PROJECTS_DIR)) {\n throw new Error(`Claude projects directory not found: ${CLAUDE_PROJECTS_DIR}`);\n }\n\n const entries = readdirSync(CLAUDE_PROJECTS_DIR).filter((name) => {\n const full = join(CLAUDE_PROJECTS_DIR, name);\n return statSync(full).isDirectory();\n });\n\n const lookupMap = buildEncodedDirMap();\n const clcMap = buildClcDirMap();\n\n for (const encodedDir of entries) {\n let rootPath = decodeEncodedDir(encodedDir, lookupMap);\n\n // If the decoded path doesn't exist, try the clc session.json fallback map.\n // The clc map is keyed by encodeDir(realpathSync(directory)), so paths that\n // were registered by clc but not in session-registry.json can be recovered.\n if (!existsSync(rootPath) && clcMap.has(encodedDir)) {\n const clcPath = clcMap.get(encodedDir)!;\n if (existsSync(clcPath)) {\n rootPath = clcPath;\n }\n }\n\n if (!existsSync(rootPath)) {\n result.skipped.push(`${encodedDir} (decoded: ${rootPath} — path not found on disk)`);\n result.projectsScanned++;\n continue;\n }\n\n // Canonicalize before upserting.\n //\n // ~/.claude/projects/ holds one encoded entry per path *spelling*, so a\n // directory reachable through a symlinked prefix (~/dev -> Cloud/Development)\n // appears twice. Decoding each to its literal path registers two projects\n // for one directory, and session history then splits between them —\n // whichever spelling the shell used gets the session.\n //\n // upsertProject looks up by root_path first, so resolving here makes the\n // second spelling land on the row the first one created instead of\n // creating a rival. Both encoded_dir values stay valid for locating\n // central notes; only the project identity is unified.\n rootPath = canonicalPath(rootPath);\n\n const slug = slugify(basename(rootPath) || encodedDir);\n const { id, isNew } = upsertProject(db, slug, rootPath, encodedDir);\n\n result.projectsScanned++;\n if (isNew) result.projectsNew++;\n else result.projectsUpdated++;\n\n try {\n ensurePaiMarker(rootPath, slug);\n } catch {\n // Non-fatal\n }\n\n const claudeNotesDir = join(CLAUDE_PROJECTS_DIR, encodedDir, \"Notes\");\n\n if (existsSync(claudeNotesDir)) {\n const rootNotesDir = join(rootPath, \"Notes\");\n if (claudeNotesDir !== rootNotesDir) {\n db.prepare(\n \"UPDATE projects SET claude_notes_dir = ?, updated_at = ? WHERE id = ?\"\n ).run(claudeNotesDir, Date.now(), id);\n }\n }\n\n if (!existsSync(claudeNotesDir)) continue;\n\n const noteFiles = findNoteFiles(claudeNotesDir);\n\n for (const filename of noteFiles) {\n const parsed = parseSessionFilename(filename);\n if (!parsed) continue;\n\n result.sessionsScanned++;\n const isNewSession = upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n if (isNewSession) result.sessionsNew++;\n }\n }\n\n // Phase 2: Scan project-root Notes/ for all registered active projects\n {\n const activeProjects = db\n .prepare(\"SELECT id, slug, root_path FROM projects WHERE status = 'active'\")\n .all() as { id: number; slug: string; root_path: string }[];\n\n for (const project of activeProjects) {\n const notesDir = join(project.root_path, \"Notes\");\n if (!existsSync(notesDir)) continue;\n\n let files: string[];\n try {\n files = findNoteFiles(notesDir);\n } catch {\n continue;\n }\n\n for (const filename of files) {\n const parsed = parseSessionFilename(filename);\n if (!parsed) continue;\n\n result.sessionsScanned++;\n const isNewSession = upsertSession(db, project.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n if (isNewSession) result.sessionsNew++;\n }\n }\n }\n\n // Phase 3: Scan extra directories from config\n const config = loadScanConfig();\n if (config.scan_dirs.length) {\n for (const rawDir of config.scan_dirs) {\n const scanDir = resolveHome(rawDir);\n if (!existsSync(scanDir)) {\n result.skipped.push(`${rawDir} (configured scan_dir not found)`);\n continue;\n }\n\n const children = readdirSync(scanDir).filter((name) => {\n if (name.startsWith(\".\")) return false;\n const full = join(scanDir, name);\n try { return statSync(full).isDirectory(); } catch { return false; }\n });\n\n for (const child of children) {\n // Canonicalize: a scan_dir of \"~/dev/ai\" (symlinked prefix) would\n // otherwise register every project under the symlinked spelling and\n // duplicate anything already registered under the resolved one.\n const childPath = canonicalPath(join(scanDir, child));\n const childSlug = slugify(child);\n const childEncoded = encodeDir(childPath);\n\n const existing = db\n .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n .get(childPath) as { id: number } | undefined;\n\n if (existing) {\n result.projectsScanned++;\n result.projectsUpdated++;\n\n try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n const notesDir = join(childPath, \"Notes\");\n if (existsSync(notesDir)) {\n const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n for (const filename of noteFiles) {\n const parsed = parseSessionFilename(filename);\n if (!parsed) continue;\n result.sessionsScanned++;\n if (upsertSession(db, existing.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n result.sessionsNew++;\n }\n }\n }\n continue;\n }\n\n const { id, isNew } = upsertProject(db, childSlug, childPath, childEncoded);\n result.projectsScanned++;\n if (isNew) result.projectsNew++;\n else result.projectsUpdated++;\n\n try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n const notesDir = join(childPath, \"Notes\");\n if (existsSync(notesDir)) {\n const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n for (const filename of noteFiles) {\n const parsed = parseSessionFilename(filename);\n if (!parsed) continue;\n result.sessionsScanned++;\n if (upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n result.sessionsNew++;\n }\n }\n }\n }\n }\n }\n\n // Phase 4: Discover PAI.md markers in scan_dirs\n if (config.scan_dirs.length) {\n const resolvedScanDirs = config.scan_dirs.map(resolveHome).filter(existsSync);\n const markers = discoverPaiMarkers(resolvedScanDirs);\n\n for (const marker of markers) {\n const registeredRow = db\n .prepare(\"SELECT id, root_path, slug FROM projects WHERE slug = ?\")\n .get(marker.slug) as { id: number; root_path: string; slug: string } | undefined;\n\n if (!registeredRow) continue;\n\n // The marker was found by walking a scan_dir, so its projectRoot carries\n // whatever spelling that dir used. Canonicalize before comparing —\n // otherwise this \"repair\" step rewrites a correct root_path back to the\n // symlinked form on every scan, undoing any deduplication.\n const markerRoot = canonicalPath(marker.projectRoot);\n\n if (registeredRow.root_path !== markerRoot) {\n const newEncoded = encodeDir(markerRoot);\n const now4 = Date.now();\n\n const encodedOwner = db\n .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n .get(newEncoded) as { id: number } | undefined;\n const pathOwner = db\n .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n .get(markerRoot) as { id: number } | undefined;\n\n const encodedSafe = !encodedOwner || encodedOwner.id === registeredRow.id;\n const pathSafe = !pathOwner || pathOwner.id === registeredRow.id;\n\n if (encodedSafe && pathSafe) {\n db.prepare(\n \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n ).run(markerRoot, newEncoded, now4, registeredRow.id);\n } else if (pathSafe) {\n db.prepare(\n \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n ).run(markerRoot, now4, registeredRow.id);\n }\n }\n }\n }\n\n // Phase 5: Backfill display_name for rows where it still equals the slug.\n // This converts legacy entries created before the basename-based naming was\n // introduced: \"jobs-grazyna\" → \"Jobs Grazyna\" (from basename of root_path).\n {\n const stale = db\n .prepare(\"SELECT id, slug, root_path FROM projects WHERE display_name = slug AND root_path IS NOT NULL AND root_path != ''\")\n .all() as { id: number; slug: string; root_path: string }[];\n\n for (const row of stale) {\n const name = basename(row.root_path);\n if (name && name !== row.slug) {\n db.prepare(\"UPDATE projects SET display_name = ?, updated_at = ? WHERE id = ?\")\n .run(name, Date.now(), row.id);\n }\n }\n }\n\n return result;\n}\n\n// ---------------------------------------------------------------------------\n// cmdScan\n// ---------------------------------------------------------------------------\n\n/**\n * Run the registry scan CLI command.\n *\n * @param opts.quick When true, skips verbose output (same scan, less noise).\n * The underlying scan is always incremental via upsert —\n * this flag exists for hook/daemon-triggered invocations that\n * want minimal log output.\n */\nexport function cmdScan(db: Database, opts: { quick?: boolean } = {}): void {\n const config = loadScanConfig();\n if (!opts.quick) {\n console.log(dim(\"Scanning ~/.claude/projects/ ...\"));\n if (config.scan_dirs.length) {\n console.log(dim(`Scanning ${config.scan_dirs.length} extra dir(s): ${config.scan_dirs.join(\", \")}`));\n }\n console.log(dim(\"Scanning project-root Notes/ directories ...\"));\n }\n\n let result: ScanResult;\n try {\n result = performScan(db);\n } catch (e) {\n console.error(err(String(e)));\n process.exit(1);\n }\n\n if (!opts.quick) {\n console.log(\n ok(`Scanned ${bold(String(result.projectsScanned))} projects, ${bold(String(result.sessionsScanned))} session notes.`)\n );\n console.log(dim(` Projects: ${result.projectsNew} new, ${result.projectsUpdated} updated`));\n console.log(dim(` Sessions: ${result.sessionsNew} new`));\n\n if (result.skipped.length) {\n console.log();\n console.log(warn(` ${result.skipped.length} project(s) skipped (path not found on disk):`));\n for (const s of result.skipped.slice(0, 10)) {\n console.log(dim(` ${s}`));\n }\n if (result.skipped.length > 10) {\n console.log(dim(` ... and ${result.skipped.length - 10} more`));\n }\n }\n } else {\n // Quick mode: single compact line (stderr so it doesn't pollute pipe output)\n process.stderr.write(\n `[registry-scan] ${result.projectsScanned} projects, ${result.sessionsScanned} sessions ` +\n `(${result.projectsNew}+${result.sessionsNew} new).\\n`\n );\n }\n}\n","/**\n * triple-extraction-prompt.ts — Prompt template for KG triple extraction.\n *\n * Used by the session-summary-worker to extract structured facts from\n * a completed session summary and store them in the temporal knowledge graph.\n */\n\nexport function buildTripleExtractionPrompt(params: {\n sessionContent: string;\n projectSlug: string;\n gitLog: string;\n}): string {\n return `Extract structured entities and relations from this coding session.\n\nOutput a single JSON object with two arrays: \"entities\" and \"relations\".\n\nEntity types: project | person | concept | tool | file | version | decision | technology | organization\n\nRules:\n- Be SPECIFIC: entity names must be concrete (e.g., \"FSRS\", \"Glidr\", \"Matthias\")\n- Use snake_case relation verb phrases (e.g., \"uses_algorithm\", \"decided_to\", \"shipped_version\")\n- Skip opinions, speculation, and \"we should\" statements\n- Skip entities obvious from project metadata unless they have a meaningful relation\n- Maximum 15 relations per session — pick the most important\n- Each entity should have a brief description (1 sentence, what it is in this context)\n- Each relation must reference entity names that appear in the entities array\n\nExample output:\n{\n \"entities\": [\n {\"name\": \"Glidr\", \"type\": \"project\", \"description\": \"Flashcard app using FSRS spaced repetition\"},\n {\"name\": \"FSRS\", \"type\": \"concept\", \"description\": \"Free Spaced Repetition Scheduler algorithm\"},\n {\"name\": \"Matthias\", \"type\": \"person\", \"description\": \"Developer of Glidr and Quassl\"},\n {\"name\": \"Quassl\", \"type\": \"project\", \"description\": \"iOS app being rewritten in Flutter\"},\n {\"name\": \"Flutter\", \"type\": \"technology\", \"description\": \"Cross-platform mobile framework\"}\n ],\n \"relations\": [\n {\"source\": \"Glidr\", \"relation\": \"uses_algorithm\", \"target\": \"FSRS\"},\n {\"source\": \"Glidr\", \"relation\": \"shipped_version\", \"target\": \"1.0.5\"},\n {\"source\": \"Matthias\", \"relation\": \"decided_to_rewrite\", \"target\": \"Quassl\"},\n {\"source\": \"Quassl\", \"relation\": \"migrating_to\", \"target\": \"Flutter\"}\n ]\n}\n\nPROJECT: ${params.projectSlug}\n\nSESSION CONTENT:\n${params.sessionContent}\n\nGIT COMMITS:\n${params.gitLog}\n\nJSON object (entities + relations):`;\n}\n","/**\n * kg-extraction.ts — Shared KG triple extraction logic.\n *\n * Extracted from session-summary-worker.ts so both the worker and the\n * CLI backfill (`pai kg backfill`) can use the same code path.\n *\n * Provides:\n * - findClaudeBinary() — locate the claude CLI\n * - spawnClaude() — generic prompt -> response runner (strips ANTHROPIC_API_KEY)\n * - extractAndStoreTriples() — run the extractor prompt and persist triples to Postgres\n */\n\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport type { Pool } from \"pg\";\nimport type { Database } from \"better-sqlite3\";\n\nimport { buildTripleExtractionPrompt } from \"../daemon/templates/triple-extraction-prompt.js\";\nimport { kgAdd, kgQuery, kgInvalidate } from \"./kg.js\";\nimport { upsertKgEntity } from \"./kg-entity.js\";\n\n// ---------------------------------------------------------------------------\n// Claude CLI binary discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Find the `claude` CLI binary. Checks common installation locations first\n * (launchd PATH is minimal so bare \"claude\" often won't resolve).\n */\nexport function findClaudeBinary(): string | null {\n const candidates = [\n join(homedir(), \".local\", \"bin\", \"claude\"),\n join(homedir(), \".claude\", \"local\", \"claude\"),\n \"/usr/local/bin/claude\",\n \"/opt/homebrew/bin/claude\",\n ];\n\n for (const candidate of candidates) {\n try {\n if (existsSync(candidate)) return candidate;\n } catch { /* skip */ }\n }\n return \"claude\";\n}\n\nconst CLAUDE_TIMEOUT_MS: Record<string, number> = {\n haiku: 60_000,\n sonnet: 120_000,\n opus: 300_000,\n};\n\n/**\n * Spawn the claude CLI with a prompt on stdin and return stdout.\n *\n * IMPORTANT: ANTHROPIC_API_KEY is stripped from the spawned environment so\n * the CLI uses the user's Max plan (free) instead of billing the API key.\n */\nexport async function spawnClaude(\n prompt: string,\n model: \"haiku\" | \"sonnet\" | \"opus\" = \"sonnet\"\n): Promise<string | null> {\n const claudeBin = findClaudeBinary();\n if (!claudeBin) {\n process.stderr.write(\"[kg-extraction] claude CLI not found.\\n\");\n return null;\n }\n\n const { spawn } = await import(\"node:child_process\");\n\n return new Promise((resolve) => {\n let timer: ReturnType<typeof setTimeout> | null = null;\n\n const { ANTHROPIC_API_KEY: _drop, ...envWithoutApiKey } = process.env;\n const child = spawn(\n claudeBin,\n [\"--model\", model, \"-p\", \"--no-session-persistence\"],\n { env: envWithoutApiKey, stdio: [\"pipe\", \"pipe\", \"pipe\"] }\n );\n\n let stdout = \"\";\n let stderr = \"\";\n\n child.stdout.on(\"data\", (chunk: Buffer) => { stdout += chunk.toString(); });\n child.stderr.on(\"data\", (chunk: Buffer) => { stderr += chunk.toString(); });\n\n child.on(\"error\", (err: Error) => {\n if (timer) { clearTimeout(timer); timer = null; }\n process.stderr.write(`[kg-extraction] ${model} spawn error: ${err.message}\\n`);\n resolve(null);\n });\n\n child.on(\"close\", (code: number | null) => {\n if (timer) { clearTimeout(timer); timer = null; }\n if (code !== 0) {\n process.stderr.write(\n `[kg-extraction] ${model} exited ${code}: ${stderr.slice(0, 300)}\\n`\n );\n resolve(null);\n } else {\n resolve(stdout.trim() || null);\n }\n });\n\n timer = setTimeout(() => {\n process.stderr.write(`[kg-extraction] ${model} timed out — killing process.\\n`);\n child.kill(\"SIGTERM\");\n resolve(null);\n }, CLAUDE_TIMEOUT_MS[model] ?? 120_000);\n\n child.stdin.write(prompt);\n child.stdin.end();\n });\n}\n\n// ---------------------------------------------------------------------------\n// Triple extraction\n// ---------------------------------------------------------------------------\n\nexport interface ExtractTriplesParams {\n summaryText: string;\n projectSlug: string;\n projectId: number | null;\n sessionId: string;\n gitLog?: string;\n model?: \"haiku\" | \"sonnet\" | \"opus\";\n /** Optional federation SQLite db — when provided, entities are upserted into kg_entities (QW1) */\n federationDb?: Database;\n /** Tenant ID for multi-tenant entity scoping (default: \"default\") */\n tenantId?: string;\n}\n\nexport interface ExtractTriplesResult {\n extracted: number;\n added: number;\n superseded: number;\n}\n\n/**\n * Extract structured KG triples from a session summary and store them in\n * Postgres. Idempotent: if a (subject, predicate) pair already has the same\n * object, no new row is added; if the object differs, the old triple is\n * invalidated (valid_to = NOW()) and a new one is inserted.\n *\n * Best-effort: per-triple errors are caught and logged but never thrown.\n * Returns a small stats object so callers can report progress.\n */\nexport async function extractAndStoreTriples(\n pool: Pool,\n params: ExtractTriplesParams\n): Promise<ExtractTriplesResult> {\n const stats: ExtractTriplesResult = { extracted: 0, added: 0, superseded: 0 };\n\n const prompt = buildTripleExtractionPrompt({\n sessionContent: params.summaryText,\n projectSlug: params.projectSlug,\n gitLog: params.gitLog ?? \"\",\n });\n\n const jsonOutput = await spawnClaude(prompt, params.model ?? \"sonnet\");\n if (!jsonOutput) return stats;\n\n // Strip markdown code fences if Claude wrapped the JSON\n const cleaned = jsonOutput\n .replace(/^```json\\s*/m, \"\")\n .replace(/^```\\s*/m, \"\")\n .replace(/\\s*```$/m, \"\")\n .trim();\n\n // Support both legacy array format and new structured format\n type LegacyTriple = { subject: string; predicate: string; object: string };\n type NewRelation = { source: string; relation: string; target: string };\n type NewEntity = { name: string; type: string; description: string };\n type NewFormat = { entities: NewEntity[]; relations: NewRelation[] };\n\n let triples: Array<LegacyTriple>;\n try {\n const parsed = JSON.parse(cleaned);\n\n if (Array.isArray(parsed)) {\n // Legacy format: [{subject, predicate, object}]\n triples = parsed;\n } else if (parsed && typeof parsed === \"object\" && Array.isArray(parsed.relations)) {\n // New structured format: {entities: [...], relations: [...]}\n const newFmt = parsed as NewFormat;\n\n // QW1: Upsert entities into federation SQLite kg_entities table when db is available\n if (params.federationDb && Array.isArray(newFmt.entities)) {\n const tenantId = params.tenantId ?? \"default\";\n for (const entity of newFmt.entities) {\n if (!entity.name) continue;\n try {\n upsertKgEntity(params.federationDb, {\n name: entity.name,\n type: entity.type ?? \"unknown\",\n description: entity.description,\n tenantId,\n });\n } catch (entityErr) {\n process.stderr.write(`[kg-extraction] entity upsert error (${entity.name}): ${entityErr}\\n`);\n }\n }\n }\n\n triples = newFmt.relations.map((r: NewRelation) => ({\n subject: r.source,\n predicate: r.relation,\n object: r.target,\n }));\n } else {\n process.stderr.write(`[kg-extraction] Unexpected JSON shape — neither array nor {entities,relations}\\n`);\n return stats;\n }\n } catch (e) {\n process.stderr.write(`[kg-extraction] JSON parse failed: ${e}\\n`);\n return stats;\n }\n\n if (!Array.isArray(triples)) return stats;\n stats.extracted = triples.length;\n\n for (const t of triples) {\n if (!t.subject || !t.predicate || !t.object) continue;\n\n try {\n const existing = await kgQuery(pool, {\n subject: t.subject,\n predicate: t.predicate,\n project_id: params.projectId ?? undefined,\n });\n\n // If an identical (subject, predicate, object) is already valid, skip — idempotent\n const alreadyValid = existing.find((e) => e.object === t.object && !e.valid_to);\n if (alreadyValid) continue;\n\n // Invalidate any superseded triple (same subject+predicate, different object)\n const supersedes = existing.find((e) => e.object !== t.object && !e.valid_to);\n if (supersedes) {\n await kgInvalidate(pool, supersedes.id);\n stats.superseded++;\n }\n\n await kgAdd(pool, {\n subject: t.subject,\n predicate: t.predicate,\n object: t.object,\n project_id: params.projectId ?? undefined,\n source_session: params.sessionId,\n confidence: \"EXTRACTED\",\n });\n stats.added++;\n } catch (tripleErr) {\n process.stderr.write(`[kg-extraction] store error (${t.subject}): ${tripleErr}\\n`);\n }\n }\n\n return stats;\n}\n","/**\n * Shared \"## Continue\" checkpoint logic for a project's TODO.md.\n *\n * WHY THIS MODULE EXISTS\n * ----------------------\n * Before this, `pause.ts` and `handover.ts` each carried their own copy of\n * findProjectTodo / stripContinueSection / block-builder. Both wrote the same\n * fixed four-line block, and both stripped any existing ## Continue section\n * unconditionally. The consequence was that a rich, model-authored checkpoint\n * could never survive:\n *\n * 1. `pai pause` had no way to accept a body, so the model printed its\n * checkpoint to the terminal and it was lost.\n * 2. Even if a body had been written by hand, the session-stop hook runs\n * `pai session handover` on every clean exit, which regenerated the\n * generic block and erased it.\n *\n * So there are two jobs here:\n *\n * - AUTHORED writes (`pai pause --body-file`) carry the model's markdown\n * verbatim, wrapped in explicit start/end markers.\n * - AUTO writes (hooks) must never destroy an authored checkpoint belonging\n * to the *same* session. They may replace a stale one left by an earlier\n * session, otherwise TODO.md would show a checkpoint that no longer\n * describes where the work stands.\n *\n * PARSING\n * -------\n * A rich body can legitimately contain `---` rules and `##` headings, which the\n * old heuristic scanner treated as section terminators. Authored blocks are\n * therefore delimited by an explicit HTML-comment pair; the legacy heuristic is\n * kept only as a fallback for blocks written before this change.\n */\n\nimport {\n existsSync,\n readFileSync,\n writeFileSync,\n readdirSync,\n renameSync,\n mkdirSync,\n realpathSync,\n} from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Locations searched for a project TODO.md, in priority order. */\nexport const TODO_LOCATIONS = [\n \"Notes/TODO.md\",\n \".claude/Notes/TODO.md\",\n \"tasks/todo.md\",\n \"TODO.md\",\n];\n\nexport const MARKER_OPEN = \"<!-- pai:checkpoint\";\nexport const MARKER_CLOSE = \"<!-- /pai:checkpoint -->\";\n\nexport const CONTINUE_HEADING = \"## Continue\";\n\n/** Who wrote the checkpoint currently in TODO.md. */\nexport type Authorship = \"model\" | \"auto\";\n\n/** Result of applying a checkpoint. */\nexport type ApplyAction = \"written\" | \"preserved\" | \"failed\";\n\n// ---------------------------------------------------------------------------\n// TODO.md discovery\n// ---------------------------------------------------------------------------\n\nexport function findProjectTodo(\n rootPath: string\n): { path: string; content: string } | null {\n for (const rel of TODO_LOCATIONS) {\n const full = join(rootPath, rel);\n if (existsSync(full)) {\n try {\n return { path: full, content: readFileSync(full, \"utf8\") };\n } catch {\n // unreadable — try next\n }\n }\n }\n return null;\n}\n\n/**\n * Resolve the TODO.md to write to, creating Notes/ if nothing exists yet.\n * Returns null only when the directory could not be created.\n */\nexport function resolveTodoTarget(\n rootPath: string,\n opts: { create?: boolean } = {}\n): { path: string; content: string } | null {\n const found = findProjectTodo(rootPath);\n if (found) return found;\n\n const notesDir = join(rootPath, \"Notes\");\n if (opts.create !== false) {\n try {\n if (!existsSync(notesDir)) mkdirSync(notesDir, { recursive: true });\n } catch {\n return null;\n }\n }\n return { path: join(notesDir, \"TODO.md\"), content: \"\" };\n}\n\n// ---------------------------------------------------------------------------\n// Marker parsing\n// ---------------------------------------------------------------------------\n\nexport interface CheckpointMeta {\n authored: Authorship;\n /** Session line the checkpoint describes, e.g. \"0003 - 2026-08-01 - Title\". */\n session?: string;\n /** Claude Code session UUID, when known. */\n sessionId?: string;\n ts?: string;\n}\n\n/**\n * Parse a `<!-- pai:checkpoint key=\"value\" ... -->` marker line.\n * Returns null when the line is not a marker.\n */\nexport function parseMarker(line: string): CheckpointMeta | null {\n const trimmed = line.trim();\n if (!trimmed.startsWith(MARKER_OPEN)) return null;\n\n const attrs: Record<string, string> = {};\n for (const m of trimmed.matchAll(/([a-zA-Z][\\w-]*)=\"([^\"]*)\"/g)) {\n attrs[m[1]] = m[2];\n }\n\n return {\n authored: attrs.authored === \"model\" ? \"model\" : \"auto\",\n session: attrs.session || undefined,\n sessionId: attrs[\"session-id\"] || undefined,\n ts: attrs.ts || undefined,\n };\n}\n\nexport interface LocatedContinue {\n /** Index of the \"## Continue\" heading line. */\n startIdx: number;\n /** Exclusive end index, past any trailing `---` separator. */\n endIdx: number;\n meta: CheckpointMeta | null;\n /** Raw lines of the section, heading included. */\n lines: string[];\n}\n\n/**\n * Lines an auto-generated block is made of. Anything else in a section is\n * content somebody put there deliberately.\n */\nconst BOILERPLATE_PATTERNS = [\n /^##\\s+Continue$/,\n /^<!--\\s*\\/?pai:checkpoint/,\n /^>\\s*\\*\\*Last session:\\*\\*/,\n /^>\\s*\\*\\*Paused at:\\*\\*/,\n /^>\\s*Working directory:/,\n /^>\\s*Resume with:/,\n /^>\\s*_No checkpoint body was recorded/,\n /^-{3,}$/,\n];\n\n/** A blank line, with or without a blockquote marker. */\nconst BLANK_LINE = /^>?\\s*$/;\n\n/**\n * True when a section contains nothing but generated header lines.\n *\n * This is the guard that stops an auto write from destroying content it did\n * not author. A session that hit the old clobbering bug may have worked around\n * it by hand — writing its state into a subsection underneath the generated\n * header lines, in an unmarked block. Those blocks predate the marker, so\n * authorship cannot be read off them; the only safe signal is whether anything\n * beyond boilerplate is present.\n */\nexport function isBoilerplateOnly(lines: string[]): boolean {\n return lines.every((line) => {\n const t = line.trim();\n return BLANK_LINE.test(t) || BOILERPLATE_PATTERNS.some((re) => re.test(t));\n });\n}\n\n/**\n * Extract the non-boilerplate content of a section, or \"\" if there is none.\n *\n * Interior blank lines are kept. They are not decoration — in Markdown they\n * are what separates a paragraph from the table or list that follows, so\n * dropping them (as this did while it treated every blank line as boilerplate)\n * silently welds a checkpoint body into one unreadable run.\n */\nexport function extractSectionContent(lines: string[]): string {\n const kept: string[] = [];\n for (const line of lines) {\n const t = line.trim();\n if (BOILERPLATE_PATTERNS.some((re) => re.test(t))) continue;\n kept.push(line);\n }\n return trimBlankEdges(collapseBlankRuns(kept)).join(\"\\n\");\n}\n\n/** Drop leading and trailing blank lines, leaving interior spacing alone. */\nfunction trimBlankEdges(lines: string[]): string[] {\n let start = 0;\n let end = lines.length;\n while (start < end && BLANK_LINE.test(lines[start].trim())) start += 1;\n while (end > start && BLANK_LINE.test(lines[end - 1].trim())) end -= 1;\n return lines.slice(start, end);\n}\n\n/**\n * Collapse runs of blank lines to a single blank.\n *\n * Removing a boilerplate line leaves the blank that surrounded it behind, so\n * stripping the header can open a three-line gap in the middle of the body.\n * One blank line is all Markdown needs.\n */\nfunction collapseBlankRuns(lines: string[]): string[] {\n const out: string[] = [];\n let lastWasBlank = false;\n for (const line of lines) {\n const isBlank = BLANK_LINE.test(line.trim());\n if (isBlank && lastWasBlank) continue;\n out.push(line);\n lastWasBlank = isBlank;\n }\n return out;\n}\n\n/**\n * Locate the existing ## Continue section.\n *\n * When the section carries an explicit marker pair, the close marker defines\n * the end — this is what lets a rich body contain `---` and `##` safely.\n * Otherwise the legacy heuristic applies: stop at the first `---` or the next\n * `##` heading.\n */\nexport function locateContinue(content: string): LocatedContinue | null {\n const lines = content.split(\"\\n\");\n const startIdx = lines.findIndex((l) => l.trim() === CONTINUE_HEADING);\n if (startIdx === -1) return null;\n\n // Look for an open marker in the first few lines of the section.\n let meta: CheckpointMeta | null = null;\n let markerIdx = -1;\n for (let i = startIdx + 1; i < Math.min(startIdx + 6, lines.length); i++) {\n const parsed = parseMarker(lines[i]);\n if (parsed) {\n meta = parsed;\n markerIdx = i;\n break;\n }\n // A non-blank, non-marker line means there is no marker for this section.\n if (lines[i].trim() !== \"\") break;\n }\n\n let endIdx = lines.length;\n\n if (markerIdx !== -1) {\n const closeIdx = lines.findIndex(\n (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n );\n if (closeIdx !== -1) {\n endIdx = closeIdx + 1;\n } else {\n // Malformed (open without close) — fall back to the heuristic so we do\n // not swallow the rest of the file.\n endIdx = heuristicEnd(lines, startIdx);\n }\n } else {\n endIdx = heuristicEnd(lines, startIdx);\n }\n\n // Consume one trailing `---` separator and the blank lines around it.\n let trailingEnd = endIdx;\n while (trailingEnd < lines.length && lines[trailingEnd].trim() === \"\") {\n trailingEnd += 1;\n }\n if (trailingEnd < lines.length && lines[trailingEnd].trim() === \"---\") {\n trailingEnd += 1;\n } else {\n trailingEnd = endIdx;\n }\n\n return {\n startIdx,\n endIdx: trailingEnd,\n meta,\n lines: lines.slice(startIdx, trailingEnd),\n };\n}\n\n/**\n * Legacy scanner for blocks written before checkpoint markers existed.\n *\n * Terminates on a horizontal rule or the next level-2 heading. Note the\n * `(?!#)` — `###` is a *subsection* of `## Continue`, not a terminator. The\n * original scanner stopped at any run of `#`, which meant a `### Restored\n * state` subsection fell outside the section entirely and could not be seen,\n * let alone carried forward.\n */\nfunction heuristicEnd(lines: string[], startIdx: number): number {\n for (let i = startIdx + 1; i < lines.length; i++) {\n const trimmed = lines[i].trim();\n if (\n trimmed === \"---\" ||\n (/^##(?!#)/.test(trimmed) && trimmed !== CONTINUE_HEADING)\n ) {\n return i;\n }\n }\n return lines.length;\n}\n\n/** Remove the ## Continue section, returning the remainder of the document. */\nexport function stripContinue(content: string): string {\n const found = locateContinue(content);\n if (!found) return content;\n\n const lines = content.split(\"\\n\");\n const before = lines.slice(0, found.startIdx);\n const after = lines.slice(found.endIdx);\n while (after.length > 0 && after[0].trim() === \"\") after.shift();\n\n return [...before, ...after].join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Reading a checkpoint back\n// ---------------------------------------------------------------------------\n\nexport interface ContinueCheckpoint {\n meta: CheckpointMeta | null;\n /** The authored body — the section with generated header lines removed. */\n body: string;\n /** The full section, heading included. */\n raw: string;\n}\n\n/**\n * Read the `## Continue` checkpoint out of a TODO.md.\n *\n * Writing a checkpoint is only half of a handover; something has to deliver it\n * to the next session. This is the read side, used by the SessionStart hook.\n *\n * Returns null when there is no section, or when the section holds nothing but\n * generated header lines — a bodyless block carries no information a new\n * session does not already have, and injecting it would only add noise.\n */\nexport function readContinueCheckpoint(\n content: string\n): ContinueCheckpoint | null {\n const found = locateContinue(content);\n if (!found) return null;\n\n const body = found.meta\n ? extractMarkedBody(found.lines)\n : extractSectionContent(found.lines);\n if (!body) return null;\n\n return { meta: found.meta, body, raw: found.lines.join(\"\\n\") };\n}\n\n/**\n * Extract the body of a marker-delimited block by position rather than by\n * pattern.\n *\n * The layout is fixed: open marker, a contiguous run of `>` header lines, the\n * body, then the close marker. Because the boundaries are known exactly, the\n * body comes back byte-for-byte — including any `---` rules or `##` headings\n * of its own, which a pattern-based filter would mistake for boilerplate and\n * delete. Falls back to the pattern filter if the shape is not as expected.\n */\nfunction extractMarkedBody(lines: string[]): string {\n const markerIdx = lines.findIndex((l) => parseMarker(l) !== null);\n if (markerIdx === -1) return extractSectionContent(lines);\n\n const closeIdx = lines.findIndex(\n (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n );\n if (closeIdx === -1) return extractSectionContent(lines);\n\n // Skip the blank lines and the `>` header run that follow the open marker.\n let bodyStart = markerIdx + 1;\n while (bodyStart < closeIdx) {\n const t = lines[bodyStart].trim();\n if (BLANK_LINE.test(t) || t.startsWith(\">\")) {\n bodyStart += 1;\n continue;\n }\n break;\n }\n\n return trimBlankEdges(lines.slice(bodyStart, closeIdx)).join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Block construction\n// ---------------------------------------------------------------------------\n\nexport interface BuildOptions {\n authored: Authorship;\n /** Human-readable session line, or \"Unknown session\". */\n sessionLine: string;\n /** Claude Code session UUID — the `claude --resume` handle. */\n sessionId?: string;\n cwd: string;\n /** Model-authored markdown. Omitted for auto blocks. */\n body?: string;\n /** Overridable for deterministic tests. */\n timestamp?: string;\n}\n\nfunction escapeAttr(value: string): string {\n return value.replace(/\"/g, \"'\");\n}\n\nexport function buildContinueBlock(opts: BuildOptions): string {\n const ts = opts.timestamp ?? new Date().toISOString();\n\n const attrs = [\n `authored=\"${opts.authored}\"`,\n `session=\"${escapeAttr(opts.sessionLine)}\"`,\n opts.sessionId ? `session-id=\"${escapeAttr(opts.sessionId)}\"` : null,\n `ts=\"${ts}\"`,\n ]\n .filter(Boolean)\n .join(\" \");\n\n const header = [\n `> **Last session:** ${opts.sessionLine}`,\n `> **Paused at:** ${ts}`,\n \">\",\n `> Working directory: ${opts.cwd}`,\n ];\n\n if (opts.sessionId) {\n header.push(\">\", `> Resume with: \\`claude --resume ${opts.sessionId}\\``);\n }\n\n const body = (opts.body ?? \"\").trim();\n\n const parts = [\n CONTINUE_HEADING,\n \"\",\n `${MARKER_OPEN} ${attrs} -->`,\n \"\",\n ...header,\n ];\n\n if (body) {\n parts.push(\"\", body);\n } else {\n parts.push(\n \">\",\n \"> _No checkpoint body was recorded — see the latest session note._\"\n );\n }\n\n parts.push(\"\", MARKER_CLOSE, \"\", \"---\", \"\");\n\n return parts.join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Apply\n// ---------------------------------------------------------------------------\n\nexport interface ApplyOptions extends BuildOptions {\n /** Project root; TODO.md is resolved beneath it. */\n rootPath: string;\n /** Preview only — nothing is written. */\n dryRun?: boolean;\n}\n\nexport interface ApplyResult {\n action: ApplyAction;\n path: string | null;\n block: string;\n /** Set when action === \"preserved\". */\n preservedMeta?: CheckpointMeta;\n /** Set when unattributed content was carried forward into the new block. */\n carriedForward?: boolean;\n error?: string;\n}\n\n/**\n * Write the ## Continue block, honouring the preservation rules.\n *\n * An AUTO write is unattended — it fires from the session-stop and pre-compact\n * hooks — so it operates under one governing rule: **never destroy content it\n * did not author.** Three cases follow from that:\n *\n * 1. An authored checkpoint for the SAME session is left untouched. The hooks\n * fire after the model has already recorded the real state; overwriting it\n * with metadata is the bug this module exists to fix.\n *\n * \"Same session\" is decided by the Claude session UUID whenever both sides\n * know it, and only falls back to the human-readable session line when one\n * of them does not. The line is derived from the session note filename,\n * and `session-stop.sh` *renames and renumbers that file* — via `session\n * slug --apply` and `session cleanup --execute` — before it reaches the\n * handover step. So the key the hook computes at exit is not the key the\n * model wrote seconds earlier, and a filename-keyed comparison mismatches\n * by construction. Observed live on 2026-08-01: notes renumbered twice\n * within a single session. The UUID is the only identifier that holds\n * still.\n * 2. An authored checkpoint from an EARLIER session is stale — TODO.md would\n * otherwise keep pointing at the wrong session — so it is replaced. Its\n * content is not lost: `pai pause` mirrors every authored body into the\n * session note.\n * 3. An UNMARKED block predates the marker, so authorship cannot be read off\n * it. If it is nothing but generated header lines it is replaced. If it\n * carries anything else, that content was put there deliberately — quite\n * possibly as a hand-rolled workaround for the very clobbering this fixes —\n * and is carried forward into the new block rather than dropped.\n *\n * A MODEL write always replaces: the model is authoring the checkpoint, and a\n * newer one supersedes an older one.\n */\n/**\n * Do an existing checkpoint and an incoming write describe the same session?\n *\n * The UUID is authoritative when both sides carry one: it is assigned by Claude\n * Code and never changes for the life of the session. The session line is a\n * derived, mutable label and is only consulted when there is no UUID to compare\n * — a checkpoint written before `--session-id` was threaded through, or an auto\n * write from a caller that was not given one.\n */\nfunction isSameSession(\n meta: CheckpointMeta,\n opts: Pick<ApplyOptions, \"sessionId\" | \"sessionLine\">\n): boolean {\n if (meta.sessionId && opts.sessionId) {\n return meta.sessionId === opts.sessionId;\n }\n return meta.session === opts.sessionLine;\n}\n\nexport function applyContinue(opts: ApplyOptions): ApplyResult {\n const target = resolveTodoTarget(opts.rootPath, { create: !opts.dryRun });\n if (!target) {\n return {\n action: \"failed\",\n path: null,\n block: buildContinueBlock(opts),\n error: \"Could not resolve or create a TODO.md target\",\n };\n }\n\n const existing = locateContinue(target.content);\n let carriedForward = false;\n let effectiveBody = opts.body;\n\n if (opts.authored === \"auto\" && existing) {\n // Case 1 — authored, same session: hands off.\n if (existing.meta?.authored === \"model\" && isSameSession(existing.meta, opts)) {\n return {\n action: \"preserved\",\n path: target.path,\n block: buildContinueBlock(opts),\n preservedMeta: existing.meta,\n };\n }\n\n // Case 3 — unmarked block holding content nobody can attribute to us.\n if (!existing.meta && !isBoilerplateOnly(existing.lines)) {\n const salvaged = extractSectionContent(existing.lines);\n if (salvaged) {\n effectiveBody = [\n \"_Carried forward from the previous checkpoint (author unknown — this\",\n \"block predates checkpoint authorship markers):_\",\n \"\",\n salvaged,\n ].join(\"\\n\");\n carriedForward = true;\n }\n }\n }\n\n const block = buildContinueBlock({ ...opts, body: effectiveBody });\n\n if (opts.dryRun) {\n return { action: \"written\", path: target.path, block, carriedForward };\n }\n\n const newContent = block + stripContinue(target.content).trimStart();\n const tmpPath = `${target.path}.continue.tmp`;\n\n try {\n writeFileSync(tmpPath, newContent, \"utf8\");\n renameSync(tmpPath, target.path);\n } catch (err) {\n try {\n if (existsSync(tmpPath)) renameSync(tmpPath, `${tmpPath}.dead`);\n } catch {\n /* ignore */\n }\n return {\n action: \"failed\",\n path: target.path,\n block,\n error: String(err),\n };\n }\n\n return { action: \"written\", path: target.path, block, carriedForward };\n}\n\n// ---------------------------------------------------------------------------\n// Session-note discovery\n//\n// Lifted verbatim from end.ts so pause, end and any future caller share one\n// implementation. end.ts now imports these rather than carrying its own copy.\n// ---------------------------------------------------------------------------\n\n/** PAI_DIR — mirrors pai-paths.ts resolution. */\nfunction getPaiDir(): string {\n const envDir = process.env.PAI_DIR;\n if (envDir) {\n try {\n return realpathSync(envDir);\n } catch {\n return envDir;\n }\n }\n return join(homedir(), \".claude\");\n}\n\n/**\n * Find the notes directory for a project — local first, then the central\n * ~/.claude/projects/<encoded>/Notes fallback. Never creates.\n */\nexport function findNotesDir(\n rootPath: string,\n encodedDir: string\n): string | null {\n for (const rel of [\"Notes\", \"notes\", \".claude/Notes\"]) {\n const p = join(rootPath, rel);\n if (existsSync(p)) return p;\n }\n const central = join(getPaiDir(), \"projects\", encodedDir, \"Notes\");\n if (existsSync(central)) return central;\n return null;\n}\n\n/**\n * Find the current (highest-numbered) session note: current month, then the\n * previous month, then a flat notesDir as legacy fallback.\n */\nexport function findLatestNote(notesDir: string): string | null {\n const findIn = (dir: string): string | null => {\n if (!existsSync(dir)) return null;\n let files: string[];\n try {\n files = readdirSync(dir);\n } catch {\n return null;\n }\n const notes = files\n .filter((f) => /^\\d{3,4}[\\s_-].*\\.md$/.test(f))\n .sort((a, b) => {\n const na = parseInt(a.match(/^(\\d+)/)?.[1] ?? \"0\", 10);\n const nb = parseInt(b.match(/^(\\d+)/)?.[1] ?? \"0\", 10);\n return na - nb;\n });\n return notes.length > 0 ? join(dir, notes[notes.length - 1]) : null;\n };\n\n const now = new Date();\n const year = String(now.getFullYear());\n const month = String(now.getMonth() + 1).padStart(2, \"0\");\n\n const current = findIn(join(notesDir, year, month));\n if (current) return current;\n\n const prev = new Date(now.getFullYear(), now.getMonth() - 1, 1);\n const py = String(prev.getFullYear());\n const pm = String(prev.getMonth() + 1).padStart(2, \"0\");\n const prevFound = findIn(join(notesDir, py, pm));\n if (prevFound) return prevFound;\n\n return findIn(notesDir);\n}\n\n// ---------------------------------------------------------------------------\n// Session-note append\n// ---------------------------------------------------------------------------\n\n/**\n * Append the checkpoint body to a session note.\n *\n * TODO.md's ## Continue is a single slot that every later checkpoint\n * overwrites. The session note is the durable record, so the body goes to both.\n * Idempotent per timestamp: re-running with the same stamp will not duplicate.\n */\nexport function appendCheckpointToNote(\n notePath: string,\n body: string,\n timestamp?: string\n): { appended: boolean; error?: string } {\n const ts = timestamp ?? new Date().toISOString();\n const heading = `## Pause Checkpoint — ${ts}`;\n\n let existing: string;\n try {\n existing = readFileSync(notePath, \"utf8\");\n } catch (err) {\n return { appended: false, error: String(err) };\n }\n\n if (existing.includes(heading)) return { appended: false };\n\n const block = `\\n\\n---\\n\\n${heading}\\n\\n${body.trim()}\\n`;\n const tmpPath = `${notePath}.checkpoint.tmp`;\n\n try {\n writeFileSync(tmpPath, existing.trimEnd() + block, \"utf8\");\n renameSync(tmpPath, notePath);\n } catch (err) {\n try {\n if (existsSync(tmpPath)) renameSync(tmpPath, `${tmpPath}.dead`);\n } catch {\n /* ignore */\n }\n return { appended: false, error: String(err) };\n }\n\n return { appended: true };\n}\n\n// ---------------------------------------------------------------------------\n// Body loading\n// ---------------------------------------------------------------------------\n\n/** Read a checkpoint body from a file, or from stdin when path is \"-\". */\nexport function readBodyFile(path: string): string {\n if (path === \"-\") {\n return readFileSync(0, \"utf8\");\n }\n return readFileSync(path, 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