@tekmidian/pai 0.16.0 → 0.17.0

package/README.md

@@ -305,17 +305,25 @@ This happens automatically. You don't need to do anything — just keep working,
 - Current working directory and task state
 - Session note checkpoints (persistent — survive even full restarts)
 
+### Surviving a Restart, and Surviving a Crash
+
+Compaction continuity above is one path. Closing the session and opening a new one is another, and it works differently:
+
+- **`## Continue` in the project's `TODO.md`** is the handover. `pai pause` writes a model-authored checkpoint there; the SessionStart hook reads it back and injects it. You do not have to say "go" — it arrives on its own.
+- **A rolling autosave keeps it fresh.** `pai session autosave` runs from the UserPromptSubmit and PostToolUse hooks (rate-limited, ~4 minutes) and records recent prompts plus the state of the working tree. The model is never invoked on `/exit` and never on Ctrl+C, so a checkpoint written *at* exit is impossible — it has to already exist. This is what makes an interrupted session survivable.
+- **Authored beats automatic.** The autosave writes in "auto" mode and will not overwrite a model-authored checkpoint for the same session. Preservation is keyed on the Claude session UUID rather than the session note's name, because the stop hook renames and renumbers that note before the handover runs.
+
 ### Session Lifecycle Hooks
 
 PAI runs hooks at every stage of a Claude Code session:
 
 | Event | What PAI Does |
 |-------|--------------|
-| **Session Start** | Loads project context, detects which project you're in, auto-registers new projects, creates a session note, injects recent observations |
-| **User Prompt** | Cleans up temp files, updates terminal tab titles, injects whisper rules and advisor mode guidance on every prompt |
+| **Session Start** | Loads project context, detects which project you're in, auto-registers new projects, creates a session note, injects recent observations, and **injects the previous session's `## Continue` checkpoint** so a restart resumes with full context |
+| **User Prompt** | Cleans up temp files, updates terminal tab titles, injects whisper rules and advisor mode guidance, refreshes the rolling autosave checkpoint |
 | **Pre-Compact** | Saves session state checkpoint, pushes `session-summary` work item to daemon, sends notification |
 | **Post-Compact** | Injects preserved state back into Claude's context |
-| **Tool Use** | Classifies tool calls into structured observations (decision/bugfix/feature/refactor/discovery/change) |
+| **Tool Use** | Classifies tool calls into structured observations (decision/bugfix/feature/refactor/discovery/change), refreshes the rolling autosave checkpoint (rate-limited) |
 | **Session End** | Pushes `session-summary` work item to daemon for AI-powered note generation |
 | **Stop** | Pushes `session-summary` work item to daemon, sends notification |
 

package/dist/auto-route-DkIRampF.mjs

@@ -0,0 +1,86 @@
+import { r as readPaiMarker } from "./pai-marker-B20KqhA8.mjs";
+import { t as detectProject } from "./detect-Bf2z-oKB.mjs";
+import { existsSync } from "node:fs";
+import { dirname, resolve } from "node:path";
+
+//#region src/session/auto-route.ts
+/**
+* Determine which project a session should be routed to.
+*
+* @param registryDb  Open PAI registry database
+* @param federation  Memory storage backend (needed only for topic fallback)
+* @param cwd         Working directory to detect from (defaults to process.cwd())
+* @param context     Optional conversation text for topic-based fallback
+* @returns           Best project match, or null if nothing matched
+*/
+async function autoRoute(registryDb, federation, cwd, context) {
+	const target = resolve(cwd ?? process.cwd());
+	const pathMatch = detectProject(registryDb, target);
+	if (pathMatch) return {
+		slug: pathMatch.slug,
+		display_name: pathMatch.display_name,
+		root_path: pathMatch.root_path,
+		method: "path",
+		confidence: 1
+	};
+	const markerResult = findMarkerUpward(registryDb, target);
+	if (markerResult) return markerResult;
+	if (context && context.trim().length > 0) {
+		const { detectTopicShift } = await import("./detector-Bwzm3E_x.mjs").then((n) => n.n);
+		const topicResult = await detectTopicShift(registryDb, federation, {
+			context,
+			threshold: .5
+		});
+		if (topicResult.suggestedProject && topicResult.confidence > 0) {
+			const projectRow = registryDb.prepare("SELECT slug, display_name, root_path FROM projects WHERE slug = ? AND status != 'archived'").get(topicResult.suggestedProject);
+			if (projectRow) return {
+				slug: projectRow.slug,
+				display_name: projectRow.display_name,
+				root_path: projectRow.root_path,
+				method: "topic",
+				confidence: topicResult.confidence
+			};
+		}
+	}
+	return null;
+}
+/**
+* Walk up the directory tree from `startDir`, checking each level for a
+* `Notes/PAI.md` file. If found, read the slug and look up the project.
+*
+* Stops at the filesystem root or after 20 levels (safety guard).
+*/
+function findMarkerUpward(registryDb, startDir) {
+	let current = startDir;
+	let depth = 0;
+	while (depth < 20) {
+		if (existsSync(`${current}/Notes/PAI.md`)) {
+			const marker = readPaiMarker(current);
+			if (marker && marker.status !== "archived") {
+				const projectRow = registryDb.prepare("SELECT slug, display_name, root_path FROM projects WHERE slug = ? AND status != 'archived'").get(marker.slug);
+				if (projectRow) return {
+					slug: projectRow.slug,
+					display_name: projectRow.display_name,
+					root_path: projectRow.root_path,
+					method: "marker",
+					confidence: 1
+				};
+			}
+		}
+		const parent = dirname(current);
+		if (parent === current) break;
+		current = parent;
+		depth++;
+	}
+	return null;
+}
+/**
+* Format an AutoRouteResult as JSON for machine consumption.
+*/
+function formatAutoRouteJson(result) {
+	return JSON.stringify(result, null, 2);
+}
+
+//#endregion
+export { autoRoute, formatAutoRouteJson };
+//# sourceMappingURL=auto-route-DkIRampF.mjs.map

package/dist/auto-route-DkIRampF.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"auto-route-DkIRampF.mjs","names":[],"sources":["../src/session/auto-route.ts"],"sourcesContent":["/**\n * Auto-route: automatic project routing suggestion on session start.\n *\n * Given a working directory (and optional conversation context), determine\n * which registered project the session belongs to.\n *\n * Strategy (in priority order):\n *   1. Path match   — exact or parent-directory match in the project registry\n *   2. Marker walk  — walk up from cwd looking for Notes/PAI.md, resolve slug\n *   3. Topic match  — BM25 keyword search against memory (requires context text)\n *\n * The function is stateless and works with direct DB access (no daemon\n * required), making it fast and safe to call during session startup.\n */\n\nimport type { Database } from \"better-sqlite3\";\nimport type { StorageBackend } from \"../storage/interface.js\";\nimport { resolve, dirname } from \"node:path\";\nimport { existsSync } from \"node:fs\";\nimport { readPaiMarker } from \"../registry/pai-marker.js\";\nimport { detectProject } from \"../cli/commands/detect.js\";\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\nexport type AutoRouteMethod = \"path\" | \"marker\" | \"topic\";\n\nexport interface AutoRouteResult {\n  /** Project slug */\n  slug: string;\n  /** Human-readable project name */\n  display_name: string;\n  /** Absolute path to the project root */\n  root_path: string;\n  /** How the project was detected */\n  method: AutoRouteMethod;\n  /** Confidence [0,1]: 1.0 for path/marker matches, BM25 fraction for topic */\n  confidence: number;\n}\n\n// ---------------------------------------------------------------------------\n// Core function\n// ---------------------------------------------------------------------------\n\n/**\n * Determine which project a session should be routed to.\n *\n * @param registryDb  Open PAI registry database\n * @param federation  Memory storage backend (needed only for topic fallback)\n * @param cwd         Working directory to detect from (defaults to process.cwd())\n * @param context     Optional conversation text for topic-based fallback\n * @returns           Best project match, or null if nothing matched\n */\nexport async function autoRoute(\n  registryDb: Database,\n  federation: Database | StorageBackend,\n  cwd?: string,\n  context?: string\n): Promise<AutoRouteResult | null> {\n  const target = resolve(cwd ?? process.cwd());\n\n  // -------------------------------------------------------------------------\n  // Strategy 1: Path match via registry\n  // -------------------------------------------------------------------------\n\n  const pathMatch = detectProject(registryDb, target);\n\n  if (pathMatch) {\n    return {\n      slug: pathMatch.slug,\n      display_name: pathMatch.display_name,\n      root_path: pathMatch.root_path,\n      method: \"path\",\n      confidence: 1.0,\n    };\n  }\n\n  // -------------------------------------------------------------------------\n  // Strategy 2: PAI.md marker file walk\n  //\n  // Walk up from cwd, checking <dir>/Notes/PAI.md at each level.\n  // Once found, resolve the slug against the registry to get full project info.\n  // -------------------------------------------------------------------------\n\n  const markerResult = findMarkerUpward(registryDb, target);\n  if (markerResult) {\n    return markerResult;\n  }\n\n  // -------------------------------------------------------------------------\n  // Strategy 3: Topic detection (requires context text)\n  // -------------------------------------------------------------------------\n\n  if (context && context.trim().length > 0) {\n    // Lazy import to avoid bundler pulling in daemon/index.mjs at module load time\n    const { detectTopicShift } = await import(\"../topics/detector.js\");\n    const topicResult = await detectTopicShift(registryDb, federation, {\n      context,\n      threshold: 0.5, // Lower threshold for initial routing (vs shift detection)\n    });\n\n    if (topicResult.suggestedProject && topicResult.confidence > 0) {\n      // Look up the full project info from the registry\n      const projectRow = registryDb\n        .prepare(\n          \"SELECT slug, display_name, root_path FROM projects WHERE slug = ? AND status != 'archived'\"\n        )\n        .get(topicResult.suggestedProject) as\n        | { slug: string; display_name: string; root_path: string }\n        | undefined;\n\n      if (projectRow) {\n        return {\n          slug: projectRow.slug,\n          display_name: projectRow.display_name,\n          root_path: projectRow.root_path,\n          method: \"topic\",\n          confidence: topicResult.confidence,\n        };\n      }\n    }\n  }\n\n  return null;\n}\n\n// ---------------------------------------------------------------------------\n// Marker walk helper\n// ---------------------------------------------------------------------------\n\n/**\n * Walk up the directory tree from `startDir`, checking each level for a\n * `Notes/PAI.md` file. If found, read the slug and look up the project.\n *\n * Stops at the filesystem root or after 20 levels (safety guard).\n */\nfunction findMarkerUpward(\n  registryDb: Database,\n  startDir: string\n): AutoRouteResult | null {\n  let current = startDir;\n  let depth = 0;\n\n  while (depth < 20) {\n    const markerPath = `${current}/Notes/PAI.md`;\n\n    if (existsSync(markerPath)) {\n      const marker = readPaiMarker(current);\n\n      if (marker && marker.status !== \"archived\") {\n        // Resolve slug to full project info in the registry\n        const projectRow = registryDb\n          .prepare(\n            \"SELECT slug, display_name, root_path FROM projects WHERE slug = ? AND status != 'archived'\"\n          )\n          .get(marker.slug) as\n          | { slug: string; display_name: string; root_path: string }\n          | undefined;\n\n        if (projectRow) {\n          return {\n            slug: projectRow.slug,\n            display_name: projectRow.display_name,\n            root_path: projectRow.root_path,\n            method: \"marker\",\n            confidence: 1.0,\n          };\n        }\n      }\n    }\n\n    const parent = dirname(current);\n    if (parent === current) break; // Reached filesystem root\n    current = parent;\n    depth++;\n  }\n\n  return null;\n}\n\n// ---------------------------------------------------------------------------\n// Format helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Format an AutoRouteResult as a human-readable string for CLI output.\n */\nexport function formatAutoRoute(result: AutoRouteResult): string {\n  const lines: string[] = [\n    `slug:         ${result.slug}`,\n    `display_name: ${result.display_name}`,\n    `root_path:    ${result.root_path}`,\n    `method:       ${result.method}`,\n    `confidence:   ${(result.confidence * 100).toFixed(0)}%`,\n  ];\n  return lines.join(\"\\n\");\n}\n\n/**\n * Format an AutoRouteResult as JSON for machine consumption.\n */\nexport function formatAutoRouteJson(result: AutoRouteResult): string {\n  return JSON.stringify(result, null, 2);\n}\n"],"mappings":";;;;;;;;;;;;;;;AAsDA,eAAsB,UACpB,YACA,YACA,KACA,SACiC;CACjC,MAAM,SAAS,QAAQ,OAAO,QAAQ,KAAK,CAAC;CAM5C,MAAM,YAAY,cAAc,YAAY,OAAO;AAEnD,KAAI,UACF,QAAO;EACL,MAAM,UAAU;EAChB,cAAc,UAAU;EACxB,WAAW,UAAU;EACrB,QAAQ;EACR,YAAY;EACb;CAUH,MAAM,eAAe,iBAAiB,YAAY,OAAO;AACzD,KAAI,aACF,QAAO;AAOT,KAAI,WAAW,QAAQ,MAAM,CAAC,SAAS,GAAG;EAExC,MAAM,EAAE,qBAAqB,MAAM,OAAO;EAC1C,MAAM,cAAc,MAAM,iBAAiB,YAAY,YAAY;GACjE;GACA,WAAW;GACZ,CAAC;AAEF,MAAI,YAAY,oBAAoB,YAAY,aAAa,GAAG;GAE9D,MAAM,aAAa,WAChB,QACC,6FACD,CACA,IAAI,YAAY,iBAAiB;AAIpC,OAAI,WACF,QAAO;IACL,MAAM,WAAW;IACjB,cAAc,WAAW;IACzB,WAAW,WAAW;IACtB,QAAQ;IACR,YAAY,YAAY;IACzB;;;AAKP,QAAO;;;;;;;;AAaT,SAAS,iBACP,YACA,UACwB;CACxB,IAAI,UAAU;CACd,IAAI,QAAQ;AAEZ,QAAO,QAAQ,IAAI;AAGjB,MAAI,WAFe,GAAG,QAAQ,eAEJ,EAAE;GAC1B,MAAM,SAAS,cAAc,QAAQ;AAErC,OAAI,UAAU,OAAO,WAAW,YAAY;IAE1C,MAAM,aAAa,WAChB,QACC,6FACD,CACA,IAAI,OAAO,KAAK;AAInB,QAAI,WACF,QAAO;KACL,MAAM,WAAW;KACjB,cAAc,WAAW;KACzB,WAAW,WAAW;KACtB,QAAQ;KACR,YAAY;KACb;;;EAKP,MAAM,SAAS,QAAQ,QAAQ;AAC/B,MAAI,WAAW,QAAS;AACxB,YAAU;AACV;;AAGF,QAAO;;;;;AAwBT,SAAgB,oBAAoB,QAAiC;AACnE,QAAO,KAAK,UAAU,QAAQ,MAAM,EAAE"}

package/dist/checkpoint-block-Bl0HD3U2.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"checkpoint-block-Bl0HD3U2.mjs","names":[],"sources":["../src/cli/commands/registry/utils.ts","../src/cli/commands/registry/scan.ts","../src/daemon/templates/triple-extraction-prompt.ts","../src/memory/kg-extraction.ts","../src/session/checkpoint-block.ts"],"sourcesContent":["/** Shared database helpers for registry command operations. */\n\nimport type { Database } from \"better-sqlite3\";\nimport { now } from \"../../utils.js\";\nimport { basename } from \"node:path\";\n\n/**\n * Upsert a project row. Returns { id, isNew }.\n *\n * Matching priority:\n *  1. root_path  — most reliable; handles slug collisions\n *  2. encoded_dir — Claude project dirs are canonical\n *  3. Insert with suffix-deduplication on slug collision\n *\n * display_name is set to basename(rootPath) on INSERT so that the unified\n * listing always shows a human-readable name rather than the kebab-case slug.\n */\nexport function upsertProject(\n  db: Database,\n  slug: string,\n  rootPath: string,\n  encodedDir: string\n): { id: number; isNew: boolean } {\n  const ts = now();\n\n  const byPath = db\n    .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n    .get(rootPath) as { id: number } | undefined;\n\n  if (byPath) {\n    const encodedOwner = db\n      .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n      .get(encodedDir) as { id: number } | undefined;\n\n    if (!encodedOwner || encodedOwner.id === byPath.id) {\n      db.prepare(\n        \"UPDATE projects SET encoded_dir = ?, updated_at = ? WHERE id = ?\"\n      ).run(encodedDir, ts, byPath.id);\n    }\n    return { id: byPath.id, isNew: false };\n  }\n\n  const byEncoded = db\n    .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n    .get(encodedDir) as { id: number } | undefined;\n\n  if (byEncoded) {\n    const pathOwner = db\n      .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n      .get(rootPath) as { id: number } | undefined;\n\n    if (!pathOwner || pathOwner.id === byEncoded.id) {\n      db.prepare(\n        \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n      ).run(rootPath, ts, byEncoded.id);\n    }\n    return { id: byEncoded.id, isNew: false };\n  }\n\n  // Insert — deduplicate slug with numeric suffix if needed.\n  let finalSlug = slug;\n  let attempt = 0;\n  while (true) {\n    const conflict = db\n      .prepare(\"SELECT id FROM projects WHERE slug = ?\")\n      .get(finalSlug) as { id: number } | undefined;\n    if (!conflict) break;\n    attempt++;\n    finalSlug = `${slug}-${attempt}`;\n  }\n\n  // Use basename(rootPath) as the human display name. If rootPath is empty or\n  // just \"/\" fall back to the slug so we always have something non-empty.\n  const displayName = basename(rootPath) || finalSlug;\n\n  const result = db\n    .prepare(\n      `INSERT OR IGNORE INTO projects\n         (slug, display_name, root_path, encoded_dir, type, status, created_at, updated_at)\n       VALUES (?, ?, ?, ?, 'local', 'active', ?, ?)`\n    )\n    .run(finalSlug, displayName, rootPath, encodedDir, ts, ts);\n\n  if (result.changes === 0) {\n    const fallback =\n      (db.prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\").get(encodedDir) as { id: number } | undefined) ??\n      (db.prepare(\"SELECT id FROM projects WHERE root_path = ?\").get(rootPath) as { id: number } | undefined);\n\n    if (fallback) {\n      return { id: fallback.id, isNew: false };\n    }\n\n    throw new Error(\n      `upsertProject: INSERT OR IGNORE was suppressed but no matching row found ` +\n      `for root_path=${rootPath} encoded_dir=${encodedDir}`\n    );\n  }\n\n  return { id: result.lastInsertRowid as number, isNew: true };\n}\n\n/** Upsert a session note. Returns true if newly inserted. */\nexport function upsertSession(\n  db: Database,\n  projectId: number,\n  number: number,\n  date: string,\n  slug: string,\n  title: string,\n  filename: string\n): boolean {\n  const existing = db\n    .prepare(\"SELECT id FROM sessions WHERE project_id = ? AND number = ?\")\n    .get(projectId, number);\n\n  if (existing) return false;\n\n  const ts = now();\n  db.prepare(\n    `INSERT INTO sessions\n       (project_id, number, date, slug, title, filename, status, created_at)\n     VALUES (?, ?, ?, ?, ?, ?, 'completed', ?)`\n  ).run(projectId, number, date, slug, title, filename, ts);\n\n  return true;\n}\n","/** Registry scan command: walk ~/.claude/projects/ and populate the registry. */\n\nimport { existsSync, readdirSync, statSync, readFileSync, writeFileSync, mkdirSync } from \"node:fs\";\nimport { realpathSync } from \"node:fs\";\nimport { join, basename, resolve } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport { ok, warn, err, dim, bold } from \"../../utils.js\";\nimport { encodeDir } from \"../../utils.js\";\nimport { decodeEncodedDir, slugify, parseSessionFilename, buildEncodedDirMap } from \"../../../registry/migrate.js\";\nimport { ensurePaiMarker, discoverPaiMarkers } from \"../../../registry/pai-marker.js\";\nimport { upsertProject, upsertSession } from \"./utils.js\";\nimport type { Database } from \"better-sqlite3\";\n\n// ---------------------------------------------------------------------------\n// clc session.json fallback map\n// ---------------------------------------------------------------------------\n\n/**\n * Build a reverse map from encoded-dir → real path using the clc session\n * registry (~/.claude/session.json).\n *\n * The clc registry stores { sessions: [{ directory, ... }, ...] }. For each\n * entry with a resolvable directory, we encode the realpath and add it to\n * the map. This lets the scanner recover project paths that are not in\n * Claude's session-registry.json but were registered by clc.\n */\nfunction buildClcDirMap(): Map<string, string> {\n  const map = new Map<string, string>();\n  const sessionFile = join(homedir(), \".claude\", \"session.json\");\n  if (!existsSync(sessionFile)) return map;\n\n  try {\n    const raw = readFileSync(sessionFile, \"utf8\");\n    const parsed = JSON.parse(raw) as { sessions?: Array<{ directory?: string }> };\n    for (const entry of parsed.sessions ?? []) {\n      const dir = entry.directory;\n      if (!dir) continue;\n      try {\n        const real = realpathSync(dir);\n        if (!existsSync(real)) continue;\n        const encoded = encodeDir(real);\n        map.set(encoded, real);\n      } catch {\n        // Unresolvable path — skip\n      }\n    }\n  } catch {\n    // Unparseable — return empty map\n  }\n  return map;\n}\n\n// ---------------------------------------------------------------------------\n// Config helpers\n// ---------------------------------------------------------------------------\n\nconst CLAUDE_PROJECTS_DIR = join(homedir(), \".claude\", \"projects\");\nconst PAI_CONFIG_DIR = join(homedir(), \".pai\");\nconst PAI_CONFIG_FILE = join(PAI_CONFIG_DIR, \"config.json\");\n\ninterface PaiConfig {\n  scan_dirs: string[];\n}\n\nexport function loadScanConfig(): PaiConfig {\n  if (!existsSync(PAI_CONFIG_FILE)) return { scan_dirs: [] };\n  try {\n    return JSON.parse(readFileSync(PAI_CONFIG_FILE, \"utf8\")) as PaiConfig;\n  } catch {\n    return { scan_dirs: [] };\n  }\n}\n\nexport function saveScanConfig(config: PaiConfig): void {\n  mkdirSync(PAI_CONFIG_DIR, { recursive: true });\n  writeFileSync(PAI_CONFIG_FILE, JSON.stringify(config, null, 2) + \"\\n\", \"utf8\");\n}\n\n/**\n * Resolve a path to its canonical form, falling back to the input.\n *\n * Every path that becomes a `projects.root_path` must go through this. That\n * column is UNIQUE, so two spellings of one directory create two projects and\n * split session history between them. The spellings are not hypothetical: a\n * configured scan_dir of `~/dev/ai` (where `~/dev` is a symlink) makes every\n * project under it register under the symlinked path, while a session started\n * from the resolved path registers a rival row.\n */\nexport function canonicalPath(p: string): string {\n  try {\n    return realpathSync(p);\n  } catch {\n    return p;\n  }\n}\n\nexport function resolveHome(p: string): string {\n  if (p.startsWith(\"~/\")) return join(homedir(), p.slice(2));\n  return resolve(p);\n}\n\n// ---------------------------------------------------------------------------\n// File discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Recursively find all .md files in a directory, including YYYY/MM subdirectories.\n * Returns filenames (basename only).\n */\nexport function findNoteFiles(dir: string): string[] {\n  const results: string[] = [];\n  if (!existsSync(dir)) return results;\n\n  for (const entry of readdirSync(dir, { withFileTypes: true })) {\n    if (entry.isFile() && entry.name.endsWith(\".md\")) {\n      results.push(entry.name);\n    } else if (entry.isDirectory() && /^\\d{4}$/.test(entry.name)) {\n      const yearDir = join(dir, entry.name);\n      for (const monthEntry of readdirSync(yearDir, { withFileTypes: true })) {\n        if (monthEntry.isDirectory() && /^\\d{2}$/.test(monthEntry.name)) {\n          const monthDir = join(yearDir, monthEntry.name);\n          for (const noteEntry of readdirSync(monthDir, { withFileTypes: true })) {\n            if (noteEntry.isFile() && noteEntry.name.endsWith(\".md\")) {\n              results.push(noteEntry.name);\n            }\n          }\n        }\n      }\n    }\n  }\n  return results;\n}\n\n// ---------------------------------------------------------------------------\n// Scan result type\n// ---------------------------------------------------------------------------\n\nexport interface ScanResult {\n  projectsScanned: number;\n  projectsNew: number;\n  projectsUpdated: number;\n  sessionsScanned: number;\n  sessionsNew: number;\n  skipped: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Core scan logic\n// ---------------------------------------------------------------------------\n\nexport function performScan(db: Database): ScanResult {\n  const result: ScanResult = {\n    projectsScanned: 0,\n    projectsNew: 0,\n    projectsUpdated: 0,\n    sessionsScanned: 0,\n    sessionsNew: 0,\n    skipped: [],\n  };\n\n  if (!existsSync(CLAUDE_PROJECTS_DIR)) {\n    throw new Error(`Claude projects directory not found: ${CLAUDE_PROJECTS_DIR}`);\n  }\n\n  const entries = readdirSync(CLAUDE_PROJECTS_DIR).filter((name) => {\n    const full = join(CLAUDE_PROJECTS_DIR, name);\n    return statSync(full).isDirectory();\n  });\n\n  const lookupMap = buildEncodedDirMap();\n  const clcMap = buildClcDirMap();\n\n  for (const encodedDir of entries) {\n    let rootPath = decodeEncodedDir(encodedDir, lookupMap);\n\n    // If the decoded path doesn't exist, try the clc session.json fallback map.\n    // The clc map is keyed by encodeDir(realpathSync(directory)), so paths that\n    // were registered by clc but not in session-registry.json can be recovered.\n    if (!existsSync(rootPath) && clcMap.has(encodedDir)) {\n      const clcPath = clcMap.get(encodedDir)!;\n      if (existsSync(clcPath)) {\n        rootPath = clcPath;\n      }\n    }\n\n    if (!existsSync(rootPath)) {\n      result.skipped.push(`${encodedDir} (decoded: ${rootPath} — path not found on disk)`);\n      result.projectsScanned++;\n      continue;\n    }\n\n    // Canonicalize before upserting.\n    //\n    // ~/.claude/projects/ holds one encoded entry per path *spelling*, so a\n    // directory reachable through a symlinked prefix (~/dev -> Cloud/Development)\n    // appears twice. Decoding each to its literal path registers two projects\n    // for one directory, and session history then splits between them —\n    // whichever spelling the shell used gets the session.\n    //\n    // upsertProject looks up by root_path first, so resolving here makes the\n    // second spelling land on the row the first one created instead of\n    // creating a rival. Both encoded_dir values stay valid for locating\n    // central notes; only the project identity is unified.\n    rootPath = canonicalPath(rootPath);\n\n    const slug = slugify(basename(rootPath) || encodedDir);\n    const { id, isNew } = upsertProject(db, slug, rootPath, encodedDir);\n\n    result.projectsScanned++;\n    if (isNew) result.projectsNew++;\n    else result.projectsUpdated++;\n\n    try {\n      ensurePaiMarker(rootPath, slug);\n    } catch {\n      // Non-fatal\n    }\n\n    const claudeNotesDir = join(CLAUDE_PROJECTS_DIR, encodedDir, \"Notes\");\n\n    if (existsSync(claudeNotesDir)) {\n      const rootNotesDir = join(rootPath, \"Notes\");\n      if (claudeNotesDir !== rootNotesDir) {\n        db.prepare(\n          \"UPDATE projects SET claude_notes_dir = ?, updated_at = ? WHERE id = ?\"\n        ).run(claudeNotesDir, Date.now(), id);\n      }\n    }\n\n    if (!existsSync(claudeNotesDir)) continue;\n\n    const noteFiles = findNoteFiles(claudeNotesDir);\n\n    for (const filename of noteFiles) {\n      const parsed = parseSessionFilename(filename);\n      if (!parsed) continue;\n\n      result.sessionsScanned++;\n      const isNewSession = upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n      if (isNewSession) result.sessionsNew++;\n    }\n  }\n\n  // Phase 2: Scan project-root Notes/ for all registered active projects\n  {\n    const activeProjects = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE status = 'active'\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const project of activeProjects) {\n      const notesDir = join(project.root_path, \"Notes\");\n      if (!existsSync(notesDir)) continue;\n\n      let files: string[];\n      try {\n        files = findNoteFiles(notesDir);\n      } catch {\n        continue;\n      }\n\n      for (const filename of files) {\n        const parsed = parseSessionFilename(filename);\n        if (!parsed) continue;\n\n        result.sessionsScanned++;\n        const isNewSession = upsertSession(db, project.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n        if (isNewSession) result.sessionsNew++;\n      }\n    }\n  }\n\n  // Phase 3: Scan extra directories from config\n  const config = loadScanConfig();\n  if (config.scan_dirs.length) {\n    for (const rawDir of config.scan_dirs) {\n      const scanDir = resolveHome(rawDir);\n      if (!existsSync(scanDir)) {\n        result.skipped.push(`${rawDir} (configured scan_dir not found)`);\n        continue;\n      }\n\n      const children = readdirSync(scanDir).filter((name) => {\n        if (name.startsWith(\".\")) return false;\n        const full = join(scanDir, name);\n        try { return statSync(full).isDirectory(); } catch { return false; }\n      });\n\n      for (const child of children) {\n        // Canonicalize: a scan_dir of \"~/dev/ai\" (symlinked prefix) would\n        // otherwise register every project under the symlinked spelling and\n        // duplicate anything already registered under the resolved one.\n        const childPath = canonicalPath(join(scanDir, child));\n        const childSlug = slugify(child);\n        const childEncoded = encodeDir(childPath);\n\n        const existing = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(childPath) as { id: number } | undefined;\n\n        if (existing) {\n          result.projectsScanned++;\n          result.projectsUpdated++;\n\n          try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n          const notesDir = join(childPath, \"Notes\");\n          if (existsSync(notesDir)) {\n            const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n            for (const filename of noteFiles) {\n              const parsed = parseSessionFilename(filename);\n              if (!parsed) continue;\n              result.sessionsScanned++;\n              if (upsertSession(db, existing.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n                result.sessionsNew++;\n              }\n            }\n          }\n          continue;\n        }\n\n        const { id, isNew } = upsertProject(db, childSlug, childPath, childEncoded);\n        result.projectsScanned++;\n        if (isNew) result.projectsNew++;\n        else result.projectsUpdated++;\n\n        try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n        const notesDir = join(childPath, \"Notes\");\n        if (existsSync(notesDir)) {\n          const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n          for (const filename of noteFiles) {\n            const parsed = parseSessionFilename(filename);\n            if (!parsed) continue;\n            result.sessionsScanned++;\n            if (upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n              result.sessionsNew++;\n            }\n          }\n        }\n      }\n    }\n  }\n\n  // Phase 4: Discover PAI.md markers in scan_dirs\n  if (config.scan_dirs.length) {\n    const resolvedScanDirs = config.scan_dirs.map(resolveHome).filter(existsSync);\n    const markers = discoverPaiMarkers(resolvedScanDirs);\n\n    for (const marker of markers) {\n      const registeredRow = db\n        .prepare(\"SELECT id, root_path, slug FROM projects WHERE slug = ?\")\n        .get(marker.slug) as { id: number; root_path: string; slug: string } | undefined;\n\n      if (!registeredRow) continue;\n\n      // The marker was found by walking a scan_dir, so its projectRoot carries\n      // whatever spelling that dir used. Canonicalize before comparing —\n      // otherwise this \"repair\" step rewrites a correct root_path back to the\n      // symlinked form on every scan, undoing any deduplication.\n      const markerRoot = canonicalPath(marker.projectRoot);\n\n      if (registeredRow.root_path !== markerRoot) {\n        const newEncoded = encodeDir(markerRoot);\n        const now4 = Date.now();\n\n        const encodedOwner = db\n          .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n          .get(newEncoded) as { id: number } | undefined;\n        const pathOwner = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(markerRoot) as { id: number } | undefined;\n\n        const encodedSafe = !encodedOwner || encodedOwner.id === registeredRow.id;\n        const pathSafe = !pathOwner || pathOwner.id === registeredRow.id;\n\n        if (encodedSafe && pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, newEncoded, now4, registeredRow.id);\n        } else if (pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, now4, registeredRow.id);\n        }\n      }\n    }\n  }\n\n  // Phase 5: Backfill display_name for rows where it still equals the slug.\n  // This converts legacy entries created before the basename-based naming was\n  // introduced: \"jobs-grazyna\" → \"Jobs Grazyna\" (from basename of root_path).\n  {\n    const stale = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE display_name = slug AND root_path IS NOT NULL AND root_path != ''\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const row of stale) {\n      const name = basename(row.root_path);\n      if (name && name !== row.slug) {\n        db.prepare(\"UPDATE projects SET display_name = ?, updated_at = ? WHERE id = ?\")\n          .run(name, Date.now(), row.id);\n      }\n    }\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// cmdScan\n// ---------------------------------------------------------------------------\n\n/**\n * Run the registry scan CLI command.\n *\n * @param opts.quick  When true, skips verbose output (same scan, less noise).\n *                    The underlying scan is always incremental via upsert —\n *                    this flag exists for hook/daemon-triggered invocations that\n *                    want minimal log output.\n */\nexport function cmdScan(db: Database, opts: { quick?: boolean } = {}): void {\n  const config = loadScanConfig();\n  if (!opts.quick) {\n    console.log(dim(\"Scanning ~/.claude/projects/ ...\"));\n    if (config.scan_dirs.length) {\n      console.log(dim(`Scanning ${config.scan_dirs.length} extra dir(s): ${config.scan_dirs.join(\", \")}`));\n    }\n    console.log(dim(\"Scanning project-root Notes/ directories ...\"));\n  }\n\n  let result: ScanResult;\n  try {\n    result = performScan(db);\n  } catch (e) {\n    console.error(err(String(e)));\n    process.exit(1);\n  }\n\n  if (!opts.quick) {\n    console.log(\n      ok(`Scanned ${bold(String(result.projectsScanned))} projects, ${bold(String(result.sessionsScanned))} session notes.`)\n    );\n    console.log(dim(`  Projects: ${result.projectsNew} new, ${result.projectsUpdated} updated`));\n    console.log(dim(`  Sessions: ${result.sessionsNew} new`));\n\n    if (result.skipped.length) {\n      console.log();\n      console.log(warn(`  ${result.skipped.length} project(s) skipped (path not found on disk):`));\n      for (const s of result.skipped.slice(0, 10)) {\n        console.log(dim(`    ${s}`));\n      }\n      if (result.skipped.length > 10) {\n        console.log(dim(`    ... and ${result.skipped.length - 10} more`));\n      }\n    }\n  } else {\n    // Quick mode: single compact line (stderr so it doesn't pollute pipe output)\n    process.stderr.write(\n      `[registry-scan] ${result.projectsScanned} projects, ${result.sessionsScanned} sessions ` +\n      `(${result.projectsNew}+${result.sessionsNew} new).\\n`\n    );\n  }\n}\n","/**\n * triple-extraction-prompt.ts — Prompt template for KG triple extraction.\n *\n * Used by the session-summary-worker to extract structured facts from\n * a completed session summary and store them in the temporal knowledge graph.\n */\n\nexport function buildTripleExtractionPrompt(params: {\n  sessionContent: string;\n  projectSlug: string;\n  gitLog: string;\n}): string {\n  return `Extract structured entities and relations from this coding session.\n\nOutput a single JSON object with two arrays: \"entities\" and \"relations\".\n\nEntity types: project | person | concept | tool | file | version | decision | technology | organization\n\nRules:\n- Be SPECIFIC: entity names must be concrete (e.g., \"FSRS\", \"Glidr\", \"Matthias\")\n- Use snake_case relation verb phrases (e.g., \"uses_algorithm\", \"decided_to\", \"shipped_version\")\n- Skip opinions, speculation, and \"we should\" statements\n- Skip entities obvious from project metadata unless they have a meaningful relation\n- Maximum 15 relations per session — pick the most important\n- Each entity should have a brief description (1 sentence, what it is in this context)\n- Each relation must reference entity names that appear in the entities array\n\nExample output:\n{\n  \"entities\": [\n    {\"name\": \"Glidr\", \"type\": \"project\", \"description\": \"Flashcard app using FSRS spaced repetition\"},\n    {\"name\": \"FSRS\", \"type\": \"concept\", \"description\": \"Free Spaced Repetition Scheduler algorithm\"},\n    {\"name\": \"Matthias\", \"type\": \"person\", \"description\": \"Developer of Glidr and Quassl\"},\n    {\"name\": \"Quassl\", \"type\": \"project\", \"description\": \"iOS app being rewritten in Flutter\"},\n    {\"name\": \"Flutter\", \"type\": \"technology\", \"description\": \"Cross-platform mobile framework\"}\n  ],\n  \"relations\": [\n    {\"source\": \"Glidr\", \"relation\": \"uses_algorithm\", \"target\": \"FSRS\"},\n    {\"source\": \"Glidr\", \"relation\": \"shipped_version\", \"target\": \"1.0.5\"},\n    {\"source\": \"Matthias\", \"relation\": \"decided_to_rewrite\", \"target\": \"Quassl\"},\n    {\"source\": \"Quassl\", \"relation\": \"migrating_to\", \"target\": \"Flutter\"}\n  ]\n}\n\nPROJECT: ${params.projectSlug}\n\nSESSION CONTENT:\n${params.sessionContent}\n\nGIT COMMITS:\n${params.gitLog}\n\nJSON object (entities + relations):`;\n}\n","/**\n * kg-extraction.ts — Shared KG triple extraction logic.\n *\n * Extracted from session-summary-worker.ts so both the worker and the\n * CLI backfill (`pai kg backfill`) can use the same code path.\n *\n * Provides:\n *   - findClaudeBinary()       — locate the claude CLI\n *   - spawnClaude()            — generic prompt -> response runner (strips ANTHROPIC_API_KEY)\n *   - extractAndStoreTriples() — run the extractor prompt and persist triples to Postgres\n */\n\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport type { Pool } from \"pg\";\nimport type { Database } from \"better-sqlite3\";\n\nimport { buildTripleExtractionPrompt } from \"../daemon/templates/triple-extraction-prompt.js\";\nimport { kgAdd, kgQuery, kgInvalidate } from \"./kg.js\";\nimport { upsertKgEntity } from \"./kg-entity.js\";\n\n// ---------------------------------------------------------------------------\n// Claude CLI binary discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Find the `claude` CLI binary. Checks common installation locations first\n * (launchd PATH is minimal so bare \"claude\" often won't resolve).\n */\nexport function findClaudeBinary(): string | null {\n  const candidates = [\n    join(homedir(), \".local\", \"bin\", \"claude\"),\n    join(homedir(), \".claude\", \"local\", \"claude\"),\n    \"/usr/local/bin/claude\",\n    \"/opt/homebrew/bin/claude\",\n  ];\n\n  for (const candidate of candidates) {\n    try {\n      if (existsSync(candidate)) return candidate;\n    } catch { /* skip */ }\n  }\n  return \"claude\";\n}\n\nconst CLAUDE_TIMEOUT_MS: Record<string, number> = {\n  haiku: 60_000,\n  sonnet: 120_000,\n  opus: 300_000,\n};\n\n/**\n * Spawn the claude CLI with a prompt on stdin and return stdout.\n *\n * IMPORTANT: ANTHROPIC_API_KEY is stripped from the spawned environment so\n * the CLI uses the user's Max plan (free) instead of billing the API key.\n */\nexport async function spawnClaude(\n  prompt: string,\n  model: \"haiku\" | \"sonnet\" | \"opus\" = \"sonnet\"\n): Promise<string | null> {\n  const claudeBin = findClaudeBinary();\n  if (!claudeBin) {\n    process.stderr.write(\"[kg-extraction] claude CLI not found.\\n\");\n    return null;\n  }\n\n  const { spawn } = await import(\"node:child_process\");\n\n  return new Promise((resolve) => {\n    let timer: ReturnType<typeof setTimeout> | null = null;\n\n    const { ANTHROPIC_API_KEY: _drop, ...envWithoutApiKey } = process.env;\n    const child = spawn(\n      claudeBin,\n      [\"--model\", model, \"-p\", \"--no-session-persistence\"],\n      { env: envWithoutApiKey, stdio: [\"pipe\", \"pipe\", \"pipe\"] }\n    );\n\n    let stdout = \"\";\n    let stderr = \"\";\n\n    child.stdout.on(\"data\", (chunk: Buffer) => { stdout += chunk.toString(); });\n    child.stderr.on(\"data\", (chunk: Buffer) => { stderr += chunk.toString(); });\n\n    child.on(\"error\", (err: Error) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      process.stderr.write(`[kg-extraction] ${model} spawn error: ${err.message}\\n`);\n      resolve(null);\n    });\n\n    child.on(\"close\", (code: number | null) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      if (code !== 0) {\n        process.stderr.write(\n          `[kg-extraction] ${model} exited ${code}: ${stderr.slice(0, 300)}\\n`\n        );\n        resolve(null);\n      } else {\n        resolve(stdout.trim() || null);\n      }\n    });\n\n    timer = setTimeout(() => {\n      process.stderr.write(`[kg-extraction] ${model} timed out — killing process.\\n`);\n      child.kill(\"SIGTERM\");\n      resolve(null);\n    }, CLAUDE_TIMEOUT_MS[model] ?? 120_000);\n\n    child.stdin.write(prompt);\n    child.stdin.end();\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Triple extraction\n// ---------------------------------------------------------------------------\n\nexport interface ExtractTriplesParams {\n  summaryText: string;\n  projectSlug: string;\n  projectId: number | null;\n  sessionId: string;\n  gitLog?: string;\n  model?: \"haiku\" | \"sonnet\" | \"opus\";\n  /** Optional federation SQLite db — when provided, entities are upserted into kg_entities (QW1) */\n  federationDb?: Database;\n  /** Tenant ID for multi-tenant entity scoping (default: \"default\") */\n  tenantId?: string;\n}\n\nexport interface ExtractTriplesResult {\n  extracted: number;\n  added: number;\n  superseded: number;\n}\n\n/**\n * Extract structured KG triples from a session summary and store them in\n * Postgres. Idempotent: if a (subject, predicate) pair already has the same\n * object, no new row is added; if the object differs, the old triple is\n * invalidated (valid_to = NOW()) and a new one is inserted.\n *\n * Best-effort: per-triple errors are caught and logged but never thrown.\n * Returns a small stats object so callers can report progress.\n */\nexport async function extractAndStoreTriples(\n  pool: Pool,\n  params: ExtractTriplesParams\n): Promise<ExtractTriplesResult> {\n  const stats: ExtractTriplesResult = { extracted: 0, added: 0, superseded: 0 };\n\n  const prompt = buildTripleExtractionPrompt({\n    sessionContent: params.summaryText,\n    projectSlug: params.projectSlug,\n    gitLog: params.gitLog ?? \"\",\n  });\n\n  const jsonOutput = await spawnClaude(prompt, params.model ?? \"sonnet\");\n  if (!jsonOutput) return stats;\n\n  // Strip markdown code fences if Claude wrapped the JSON\n  const cleaned = jsonOutput\n    .replace(/^```json\\s*/m, \"\")\n    .replace(/^```\\s*/m, \"\")\n    .replace(/\\s*```$/m, \"\")\n    .trim();\n\n  // Support both legacy array format and new structured format\n  type LegacyTriple = { subject: string; predicate: string; object: string };\n  type NewRelation = { source: string; relation: string; target: string };\n  type NewEntity = { name: string; type: string; description: string };\n  type NewFormat = { entities: NewEntity[]; relations: NewRelation[] };\n\n  let triples: Array<LegacyTriple>;\n  try {\n    const parsed = JSON.parse(cleaned);\n\n    if (Array.isArray(parsed)) {\n      // Legacy format: [{subject, predicate, object}]\n      triples = parsed;\n    } else if (parsed && typeof parsed === \"object\" && Array.isArray(parsed.relations)) {\n      // New structured format: {entities: [...], relations: [...]}\n      const newFmt = parsed as NewFormat;\n\n      // QW1: Upsert entities into federation SQLite kg_entities table when db is available\n      if (params.federationDb && Array.isArray(newFmt.entities)) {\n        const tenantId = params.tenantId ?? \"default\";\n        for (const entity of newFmt.entities) {\n          if (!entity.name) continue;\n          try {\n            upsertKgEntity(params.federationDb, {\n              name: entity.name,\n              type: entity.type ?? \"unknown\",\n              description: entity.description,\n              tenantId,\n            });\n          } catch (entityErr) {\n            process.stderr.write(`[kg-extraction] entity upsert error (${entity.name}): ${entityErr}\\n`);\n          }\n        }\n      }\n\n      triples = newFmt.relations.map((r: NewRelation) => ({\n        subject: r.source,\n        predicate: r.relation,\n        object: r.target,\n      }));\n    } else {\n      process.stderr.write(`[kg-extraction] Unexpected JSON shape — neither array nor {entities,relations}\\n`);\n      return stats;\n    }\n  } catch (e) {\n    process.stderr.write(`[kg-extraction] JSON parse failed: ${e}\\n`);\n    return stats;\n  }\n\n  if (!Array.isArray(triples)) return stats;\n  stats.extracted = triples.length;\n\n  for (const t of triples) {\n    if (!t.subject || !t.predicate || !t.object) continue;\n\n    try {\n      const existing = await kgQuery(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        project_id: params.projectId ?? undefined,\n      });\n\n      // If an identical (subject, predicate, object) is already valid, skip — idempotent\n      const alreadyValid = existing.find((e) => e.object === t.object && !e.valid_to);\n      if (alreadyValid) continue;\n\n      // Invalidate any superseded triple (same subject+predicate, different object)\n      const supersedes = existing.find((e) => e.object !== t.object && !e.valid_to);\n      if (supersedes) {\n        await kgInvalidate(pool, supersedes.id);\n        stats.superseded++;\n      }\n\n      await kgAdd(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        object: t.object,\n        project_id: params.projectId ?? undefined,\n        source_session: params.sessionId,\n        confidence: \"EXTRACTED\",\n      });\n      stats.added++;\n    } catch (tripleErr) {\n      process.stderr.write(`[kg-extraction] store error (${t.subject}): ${tripleErr}\\n`);\n    }\n  }\n\n  return stats;\n}\n","/**\n * Shared \"## Continue\" checkpoint logic for a project's TODO.md.\n *\n * WHY THIS MODULE EXISTS\n * ----------------------\n * Before this, `pause.ts` and `handover.ts` each carried their own copy of\n * findProjectTodo / stripContinueSection / block-builder. Both wrote the same\n * fixed four-line block, and both stripped any existing ## Continue section\n * unconditionally. The consequence was that a rich, model-authored checkpoint\n * could never survive:\n *\n *   1. `pai pause` had no way to accept a body, so the model printed its\n *      checkpoint to the terminal and it was lost.\n *   2. Even if a body had been written by hand, the session-stop hook runs\n *      `pai session handover` on every clean exit, which regenerated the\n *      generic block and erased it.\n *\n * So there are two jobs here:\n *\n *   - AUTHORED writes (`pai pause --body-file`) carry the model's markdown\n *     verbatim, wrapped in explicit start/end markers.\n *   - AUTO writes (hooks) must never destroy an authored checkpoint belonging\n *     to the *same* session. They may replace a stale one left by an earlier\n *     session, otherwise TODO.md would show a checkpoint that no longer\n *     describes where the work stands.\n *\n * PARSING\n * -------\n * A rich body can legitimately contain `---` rules and `##` headings, which the\n * old heuristic scanner treated as section terminators. Authored blocks are\n * therefore delimited by an explicit HTML-comment pair; the legacy heuristic is\n * kept only as a fallback for blocks written before this change.\n */\n\nimport {\n  existsSync,\n  readFileSync,\n  writeFileSync,\n  readdirSync,\n  renameSync,\n  mkdirSync,\n  realpathSync,\n} from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Locations searched for a project TODO.md, in priority order. */\nexport const TODO_LOCATIONS = [\n  \"Notes/TODO.md\",\n  \".claude/Notes/TODO.md\",\n  \"tasks/todo.md\",\n  \"TODO.md\",\n];\n\nexport const MARKER_OPEN = \"<!-- pai:checkpoint\";\nexport const MARKER_CLOSE = \"<!-- /pai:checkpoint -->\";\n\nexport const CONTINUE_HEADING = \"## Continue\";\n\n/** Who wrote the checkpoint currently in TODO.md. */\nexport type Authorship = \"model\" | \"auto\";\n\n/** Result of applying a checkpoint. */\nexport type ApplyAction = \"written\" | \"preserved\" | \"failed\";\n\n// ---------------------------------------------------------------------------\n// TODO.md discovery\n// ---------------------------------------------------------------------------\n\nexport function findProjectTodo(\n  rootPath: string\n): { path: string; content: string } | null {\n  for (const rel of TODO_LOCATIONS) {\n    const full = join(rootPath, rel);\n    if (existsSync(full)) {\n      try {\n        return { path: full, content: readFileSync(full, \"utf8\") };\n      } catch {\n        // unreadable — try next\n      }\n    }\n  }\n  return null;\n}\n\n/**\n * Resolve the TODO.md to write to, creating Notes/ if nothing exists yet.\n * Returns null only when the directory could not be created.\n */\nexport function resolveTodoTarget(\n  rootPath: string,\n  opts: { create?: boolean } = {}\n): { path: string; content: string } | null {\n  const found = findProjectTodo(rootPath);\n  if (found) return found;\n\n  const notesDir = join(rootPath, \"Notes\");\n  if (opts.create !== false) {\n    try {\n      if (!existsSync(notesDir)) mkdirSync(notesDir, { recursive: true });\n    } catch {\n      return null;\n    }\n  }\n  return { path: join(notesDir, \"TODO.md\"), content: \"\" };\n}\n\n// ---------------------------------------------------------------------------\n// Marker parsing\n// ---------------------------------------------------------------------------\n\nexport interface CheckpointMeta {\n  authored: Authorship;\n  /** Session line the checkpoint describes, e.g. \"0003 - 2026-08-01 - Title\". */\n  session?: string;\n  /** Claude Code session UUID, when known. */\n  sessionId?: string;\n  ts?: string;\n}\n\n/**\n * Parse a `<!-- pai:checkpoint key=\"value\" ... -->` marker line.\n * Returns null when the line is not a marker.\n */\nexport function parseMarker(line: string): CheckpointMeta | null {\n  const trimmed = line.trim();\n  if (!trimmed.startsWith(MARKER_OPEN)) return null;\n\n  const attrs: Record<string, string> = {};\n  for (const m of trimmed.matchAll(/([a-zA-Z][\\w-]*)=\"([^\"]*)\"/g)) {\n    attrs[m[1]] = m[2];\n  }\n\n  return {\n    authored: attrs.authored === \"model\" ? \"model\" : \"auto\",\n    session: attrs.session || undefined,\n    sessionId: attrs[\"session-id\"] || undefined,\n    ts: attrs.ts || undefined,\n  };\n}\n\nexport interface LocatedContinue {\n  /** Index of the \"## Continue\" heading line. */\n  startIdx: number;\n  /** Exclusive end index, past any trailing `---` separator. */\n  endIdx: number;\n  meta: CheckpointMeta | null;\n  /** Raw lines of the section, heading included. */\n  lines: string[];\n}\n\n/**\n * Lines an auto-generated block is made of. Anything else in a section is\n * content somebody put there deliberately.\n */\nconst BOILERPLATE_PATTERNS = [\n  /^##\\s+Continue$/,\n  /^<!--\\s*\\/?pai:checkpoint/,\n  /^>\\s*\\*\\*Last session:\\*\\*/,\n  /^>\\s*\\*\\*Paused at:\\*\\*/,\n  /^>\\s*Working directory:/,\n  /^>\\s*Resume with:/,\n  /^>\\s*_No checkpoint body was recorded/,\n  /^>?\\s*$/,\n  /^-{3,}$/,\n];\n\n/**\n * True when a section contains nothing but generated header lines.\n *\n * This is the guard that stops an auto write from destroying content it did\n * not author. A session that hit the old clobbering bug may have worked around\n * it by hand — writing its state into a subsection underneath the generated\n * header lines, in an unmarked block. Those blocks predate the marker, so\n * authorship cannot be read off them; the only safe signal is whether anything\n * beyond boilerplate is present.\n */\nexport function isBoilerplateOnly(lines: string[]): boolean {\n  return lines.every((line) => {\n    const t = line.trim();\n    return BOILERPLATE_PATTERNS.some((re) => re.test(t));\n  });\n}\n\n/** Extract the non-boilerplate content of a section, or \"\" if there is none. */\nexport function extractSectionContent(lines: string[]): string {\n  const kept: string[] = [];\n  for (const line of lines) {\n    const t = line.trim();\n    if (BOILERPLATE_PATTERNS.some((re) => re.test(t))) continue;\n    kept.push(line);\n  }\n  return kept.join(\"\\n\").trim();\n}\n\n/**\n * Locate the existing ## Continue section.\n *\n * When the section carries an explicit marker pair, the close marker defines\n * the end — this is what lets a rich body contain `---` and `##` safely.\n * Otherwise the legacy heuristic applies: stop at the first `---` or the next\n * `##` heading.\n */\nexport function locateContinue(content: string): LocatedContinue | null {\n  const lines = content.split(\"\\n\");\n  const startIdx = lines.findIndex((l) => l.trim() === CONTINUE_HEADING);\n  if (startIdx === -1) return null;\n\n  // Look for an open marker in the first few lines of the section.\n  let meta: CheckpointMeta | null = null;\n  let markerIdx = -1;\n  for (let i = startIdx + 1; i < Math.min(startIdx + 6, lines.length); i++) {\n    const parsed = parseMarker(lines[i]);\n    if (parsed) {\n      meta = parsed;\n      markerIdx = i;\n      break;\n    }\n    // A non-blank, non-marker line means there is no marker for this section.\n    if (lines[i].trim() !== \"\") break;\n  }\n\n  let endIdx = lines.length;\n\n  if (markerIdx !== -1) {\n    const closeIdx = lines.findIndex(\n      (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n    );\n    if (closeIdx !== -1) {\n      endIdx = closeIdx + 1;\n    } else {\n      // Malformed (open without close) — fall back to the heuristic so we do\n      // not swallow the rest of the file.\n      endIdx = heuristicEnd(lines, startIdx);\n    }\n  } else {\n    endIdx = heuristicEnd(lines, startIdx);\n  }\n\n  // Consume one trailing `---` separator and the blank lines around it.\n  let trailingEnd = endIdx;\n  while (trailingEnd < lines.length && lines[trailingEnd].trim() === \"\") {\n    trailingEnd += 1;\n  }\n  if (trailingEnd < lines.length && lines[trailingEnd].trim() === \"---\") {\n    trailingEnd += 1;\n  } else {\n    trailingEnd = endIdx;\n  }\n\n  return {\n    startIdx,\n    endIdx: trailingEnd,\n    meta,\n    lines: lines.slice(startIdx, trailingEnd),\n  };\n}\n\n/**\n * Legacy scanner for blocks written before checkpoint markers existed.\n *\n * Terminates on a horizontal rule or the next level-2 heading. Note the\n * `(?!#)` — `###` is a *subsection* of `## Continue`, not a terminator. The\n * original scanner stopped at any run of `#`, which meant a `### Restored\n * state` subsection fell outside the section entirely and could not be seen,\n * let alone carried forward.\n */\nfunction heuristicEnd(lines: string[], startIdx: number): number {\n  for (let i = startIdx + 1; i < lines.length; i++) {\n    const trimmed = lines[i].trim();\n    if (\n      trimmed === \"---\" ||\n      (/^##(?!#)/.test(trimmed) && trimmed !== CONTINUE_HEADING)\n    ) {\n      return i;\n    }\n  }\n  return lines.length;\n}\n\n/** Remove the ## Continue section, returning the remainder of the document. */\nexport function stripContinue(content: string): string {\n  const found = locateContinue(content);\n  if (!found) return content;\n\n  const lines = content.split(\"\\n\");\n  const before = lines.slice(0, found.startIdx);\n  const after = lines.slice(found.endIdx);\n  while (after.length > 0 && after[0].trim() === \"\") after.shift();\n\n  return [...before, ...after].join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Block construction\n// ---------------------------------------------------------------------------\n\nexport interface BuildOptions {\n  authored: Authorship;\n  /** Human-readable session line, or \"Unknown session\". */\n  sessionLine: string;\n  /** Claude Code session UUID — the `claude --resume` handle. */\n  sessionId?: string;\n  cwd: string;\n  /** Model-authored markdown. Omitted for auto blocks. */\n  body?: string;\n  /** Overridable for deterministic tests. */\n  timestamp?: string;\n}\n\nfunction escapeAttr(value: string): string {\n  return value.replace(/\"/g, \"'\");\n}\n\nexport function buildContinueBlock(opts: BuildOptions): string {\n  const ts = opts.timestamp ?? new Date().toISOString();\n\n  const attrs = [\n    `authored=\"${opts.authored}\"`,\n    `session=\"${escapeAttr(opts.sessionLine)}\"`,\n    opts.sessionId ? `session-id=\"${escapeAttr(opts.sessionId)}\"` : null,\n    `ts=\"${ts}\"`,\n  ]\n    .filter(Boolean)\n    .join(\" \");\n\n  const header = [\n    `> **Last session:** ${opts.sessionLine}`,\n    `> **Paused at:** ${ts}`,\n    \">\",\n    `> Working directory: ${opts.cwd}`,\n  ];\n\n  if (opts.sessionId) {\n    header.push(\">\", `> Resume with: \\`claude --resume ${opts.sessionId}\\``);\n  }\n\n  const body = (opts.body ?? \"\").trim();\n\n  const parts = [\n    CONTINUE_HEADING,\n    \"\",\n    `${MARKER_OPEN} ${attrs} -->`,\n    \"\",\n    ...header,\n  ];\n\n  if (body) {\n    parts.push(\"\", body);\n  } else {\n    parts.push(\n      \">\",\n      \"> _No checkpoint body was recorded — see the latest session note._\"\n    );\n  }\n\n  parts.push(\"\", MARKER_CLOSE, \"\", \"---\", \"\");\n\n  return parts.join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Apply\n// ---------------------------------------------------------------------------\n\nexport interface ApplyOptions extends BuildOptions {\n  /** Project root; TODO.md is resolved beneath it. */\n  rootPath: string;\n  /** Preview only — nothing is written. */\n  dryRun?: boolean;\n}\n\nexport interface ApplyResult {\n  action: ApplyAction;\n  path: string | null;\n  block: string;\n  /** Set when action === \"preserved\". */\n  preservedMeta?: CheckpointMeta;\n  /** Set when unattributed content was carried forward into the new block. */\n  carriedForward?: boolean;\n  error?: string;\n}\n\n/**\n * Write the ## Continue block, honouring the preservation rules.\n *\n * An AUTO write is unattended — it fires from the session-stop and pre-compact\n * hooks — so it operates under one governing rule: **never destroy content it\n * did not author.** Three cases follow from that:\n *\n *   1. An authored checkpoint for the SAME session is left untouched. The hooks\n *      fire after the model has already recorded the real state; overwriting it\n *      with metadata is the bug this module exists to fix.\n *   2. An authored checkpoint from an EARLIER session is stale — TODO.md would\n *      otherwise keep pointing at the wrong session — so it is replaced. Its\n *      content is not lost: `pai pause` mirrors every authored body into the\n *      session note.\n *   3. An UNMARKED block predates the marker, so authorship cannot be read off\n *      it. If it is nothing but generated header lines it is replaced. If it\n *      carries anything else, that content was put there deliberately — quite\n *      possibly as a hand-rolled workaround for the very clobbering this fixes —\n *      and is carried forward into the new block rather than dropped.\n *\n * A MODEL write always replaces: the model is authoring the checkpoint, and a\n * newer one supersedes an older one.\n */\nexport function applyContinue(opts: ApplyOptions): ApplyResult {\n  const target = resolveTodoTarget(opts.rootPath, { create: !opts.dryRun });\n  if (!target) {\n    return {\n      action: \"failed\",\n      path: null,\n      block: buildContinueBlock(opts),\n      error: \"Could not resolve or create a TODO.md target\",\n    };\n  }\n\n  const existing = locateContinue(target.content);\n  let carriedForward = false;\n  let effectiveBody = opts.body;\n\n  if (opts.authored === \"auto\" && existing) {\n    // Case 1 — authored, same session: hands off.\n    if (\n      existing.meta?.authored === \"model\" &&\n      existing.meta.session === opts.sessionLine\n    ) {\n      return {\n        action: \"preserved\",\n        path: target.path,\n        block: buildContinueBlock(opts),\n        preservedMeta: existing.meta,\n      };\n    }\n\n    // Case 3 — unmarked block holding content nobody can attribute to us.\n    if (!existing.meta && !isBoilerplateOnly(existing.lines)) {\n      const salvaged = extractSectionContent(existing.lines);\n      if (salvaged) {\n        effectiveBody = [\n          \"_Carried forward from the previous checkpoint (author unknown — this\",\n          \"block predates checkpoint authorship markers):_\",\n          \"\",\n          salvaged,\n        ].join(\"\\n\");\n        carriedForward = true;\n      }\n    }\n  }\n\n  const block = buildContinueBlock({ ...opts, body: effectiveBody });\n\n  if (opts.dryRun) {\n    return { action: \"written\", path: target.path, block, carriedForward };\n  }\n\n  const newContent = block + stripContinue(target.content).trimStart();\n  const tmpPath = `${target.path}.continue.tmp`;\n\n  try {\n    writeFileSync(tmpPath, newContent, \"utf8\");\n    renameSync(tmpPath, target.path);\n  } catch (err) {\n    try {\n      if (existsSync(tmpPath)) renameSync(tmpPath, `${tmpPath}.dead`);\n    } catch {\n      /* ignore */\n    }\n    return {\n      action: \"failed\",\n      path: target.path,\n      block,\n      error: String(err),\n    };\n  }\n\n  return { action: \"written\", path: target.path, block, carriedForward };\n}\n\n// ---------------------------------------------------------------------------\n// Session-note discovery\n//\n// Lifted verbatim from end.ts so pause, end and any future caller share one\n// implementation. end.ts now imports these rather than carrying its own copy.\n// ---------------------------------------------------------------------------\n\n/** PAI_DIR — mirrors pai-paths.ts resolution. */\nfunction getPaiDir(): string {\n  const envDir = process.env.PAI_DIR;\n  if (envDir) {\n    try {\n      return realpathSync(envDir);\n    } catch {\n      return envDir;\n    }\n  }\n  return join(homedir(), \".claude\");\n}\n\n/**\n * Find the notes directory for a project — local first, then the central\n * ~/.claude/projects/<encoded>/Notes fallback. Never creates.\n */\nexport function findNotesDir(\n  rootPath: string,\n  encodedDir: string\n): string | null {\n  for (const rel of [\"Notes\", \"notes\", \".claude/Notes\"]) {\n    const p = join(rootPath, rel);\n    if (existsSync(p)) return p;\n  }\n  const central = join(getPaiDir(), \"projects\", encodedDir, \"Notes\");\n  if (existsSync(central)) return central;\n  return null;\n}\n\n/**\n * Find the current (highest-numbered) session note: current month, then the\n * previous month, then a flat notesDir as legacy fallback.\n */\nexport function findLatestNote(notesDir: string): string | null {\n  const findIn = (dir: string): string | null => {\n    if (!existsSync(dir)) return null;\n    let files: string[];\n    try {\n      files = readdirSync(dir);\n    } catch {\n      return null;\n    }\n    const notes = files\n      .filter((f) => /^\\d{3,4}[\\s_-].*\\.md$/.test(f))\n      .sort((a, b) => {\n        const na = parseInt(a.match(/^(\\d+)/)?.[1] ?? \"0\", 10);\n        const nb = parseInt(b.match(/^(\\d+)/)?.[1] ?? \"0\", 10);\n        return na - nb;\n      });\n    return notes.length > 0 ? join(dir, notes[notes.length - 1]) : null;\n  };\n\n  const now = new Date();\n  const year = String(now.getFullYear());\n  const month = String(now.getMonth() + 1).padStart(2, \"0\");\n\n  const current = findIn(join(notesDir, year, month));\n  if (current) return current;\n\n  const prev = new Date(now.getFullYear(), now.getMonth() - 1, 1);\n  const py = String(prev.getFullYear());\n  const pm = String(prev.getMonth() + 1).padStart(2, \"0\");\n  const prevFound = findIn(join(notesDir, py, pm));\n  if (prevFound) return prevFound;\n\n  return findIn(notesDir);\n}\n\n// ---------------------------------------------------------------------------\n// Session-note append\n// ---------------------------------------------------------------------------\n\n/**\n * Append the checkpoint body to a session note.\n *\n * TODO.md's ## Continue is a single slot that every later checkpoint\n * overwrites. The session note is the durable record, so the body goes to both.\n * Idempotent per timestamp: re-running with the same stamp will not duplicate.\n */\nexport function appendCheckpointToNote(\n  notePath: string,\n  body: string,\n  timestamp?: string\n): { appended: boolean; error?: string } {\n  const ts = timestamp ?? new Date().toISOString();\n  const heading = `## Pause Checkpoint — ${ts}`;\n\n  let existing: string;\n  try {\n    existing = readFileSync(notePath, \"utf8\");\n  } catch (err) {\n    return { appended: false, error: String(err) };\n  }\n\n  if (existing.includes(heading)) return { appended: false };\n\n  const block = `\\n\\n---\\n\\n${heading}\\n\\n${body.trim()}\\n`;\n  const tmpPath = `${notePath}.checkpoint.tmp`;\n\n  try {\n    writeFileSync(tmpPath, existing.trimEnd() + block, \"utf8\");\n    renameSync(tmpPath, notePath);\n  } catch (err) {\n    try {\n      if (existsSync(tmpPath)) renameSync(tmpPath, `${tmpPath}.dead`);\n    } catch {\n      /* ignore */\n    }\n    return { appended: false, error: String(err) };\n  }\n\n  return { appended: true };\n}\n\n// ---------------------------------------------------------------------------\n// Body loading\n// ---------------------------------------------------------------------------\n\n/** Read a checkpoint body from a file, or from stdin when path is \"-\". */\nexport function readBodyFile(path: string): string {\n  if (path === \"-\") {\n    return readFileSync(0, \"utf8\");\n  }\n  return readFileSync(path, 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Insert with suffix-deduplication on slug collision\n *\n * display_name is set to basename(rootPath) on INSERT so that the unified\n * listing always shows a human-readable name rather than the kebab-case slug.\n */\nexport function upsertProject(\n  db: Database,\n  slug: string,\n  rootPath: string,\n  encodedDir: string\n): { id: number; isNew: boolean } {\n  const ts = now();\n\n  const byPath = db\n    .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n    .get(rootPath) as { id: number } | undefined;\n\n  if (byPath) {\n    const encodedOwner = db\n      .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n      .get(encodedDir) as { id: number } | undefined;\n\n    if (!encodedOwner || encodedOwner.id === byPath.id) {\n      db.prepare(\n        \"UPDATE projects SET encoded_dir = ?, updated_at = ? WHERE id = ?\"\n      ).run(encodedDir, ts, byPath.id);\n    }\n    return { id: byPath.id, isNew: false };\n  }\n\n  const byEncoded = db\n    .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n    .get(encodedDir) as { id: number } | undefined;\n\n  if (byEncoded) {\n    const pathOwner = db\n      .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n      .get(rootPath) as { id: number } | undefined;\n\n    if (!pathOwner || pathOwner.id === byEncoded.id) {\n      db.prepare(\n        \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n      ).run(rootPath, ts, byEncoded.id);\n    }\n    return { id: byEncoded.id, isNew: false };\n  }\n\n  // Insert — deduplicate slug with numeric suffix if needed.\n  let finalSlug = slug;\n  let attempt = 0;\n  while (true) {\n    const conflict = db\n      .prepare(\"SELECT id FROM projects WHERE slug = ?\")\n      .get(finalSlug) as { id: number } | undefined;\n    if (!conflict) break;\n    attempt++;\n    finalSlug = `${slug}-${attempt}`;\n  }\n\n  // Use basename(rootPath) as the human display name. If rootPath is empty or\n  // just \"/\" fall back to the slug so we always have something non-empty.\n  const displayName = basename(rootPath) || finalSlug;\n\n  const result = db\n    .prepare(\n      `INSERT OR IGNORE INTO projects\n         (slug, display_name, root_path, encoded_dir, type, status, created_at, updated_at)\n       VALUES (?, ?, ?, ?, 'local', 'active', ?, ?)`\n    )\n    .run(finalSlug, displayName, rootPath, encodedDir, ts, ts);\n\n  if (result.changes === 0) {\n    const fallback =\n      (db.prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\").get(encodedDir) as { id: number } | undefined) ??\n      (db.prepare(\"SELECT id FROM projects WHERE root_path = ?\").get(rootPath) as { id: number } | undefined);\n\n    if (fallback) {\n      return { id: fallback.id, isNew: false };\n    }\n\n    throw new Error(\n      `upsertProject: INSERT OR IGNORE was suppressed but no matching row found ` +\n      `for root_path=${rootPath} encoded_dir=${encodedDir}`\n    );\n  }\n\n  return { id: result.lastInsertRowid as number, isNew: true };\n}\n\n/** Upsert a session note. Returns true if newly inserted. */\nexport function upsertSession(\n  db: Database,\n  projectId: number,\n  number: number,\n  date: string,\n  slug: string,\n  title: string,\n  filename: string\n): boolean {\n  const existing = db\n    .prepare(\"SELECT id FROM sessions WHERE project_id = ? AND number = ?\")\n    .get(projectId, number);\n\n  if (existing) return false;\n\n  const ts = now();\n  db.prepare(\n    `INSERT INTO sessions\n       (project_id, number, date, slug, title, filename, status, created_at)\n     VALUES (?, ?, ?, ?, ?, ?, 'completed', ?)`\n  ).run(projectId, number, date, slug, title, filename, ts);\n\n  return true;\n}\n","/** Registry scan command: walk ~/.claude/projects/ and populate the registry. */\n\nimport { existsSync, readdirSync, statSync, readFileSync, writeFileSync, mkdirSync } from \"node:fs\";\nimport { realpathSync } from \"node:fs\";\nimport { join, basename, resolve } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport { ok, warn, err, dim, bold } from \"../../utils.js\";\nimport { encodeDir } from \"../../utils.js\";\nimport { decodeEncodedDir, slugify, parseSessionFilename, buildEncodedDirMap } from \"../../../registry/migrate.js\";\nimport { ensurePaiMarker, discoverPaiMarkers } from \"../../../registry/pai-marker.js\";\nimport { upsertProject, upsertSession } from \"./utils.js\";\nimport type { Database } from \"better-sqlite3\";\n\n// ---------------------------------------------------------------------------\n// clc session.json fallback map\n// ---------------------------------------------------------------------------\n\n/**\n * Build a reverse map from encoded-dir → real path using the clc session\n * registry (~/.claude/session.json).\n *\n * The clc registry stores { sessions: [{ directory, ... }, ...] }. For each\n * entry with a resolvable directory, we encode the realpath and add it to\n * the map. This lets the scanner recover project paths that are not in\n * Claude's session-registry.json but were registered by clc.\n */\nfunction buildClcDirMap(): Map<string, string> {\n  const map = new Map<string, string>();\n  const sessionFile = join(homedir(), \".claude\", \"session.json\");\n  if (!existsSync(sessionFile)) return map;\n\n  try {\n    const raw = readFileSync(sessionFile, \"utf8\");\n    const parsed = JSON.parse(raw) as { sessions?: Array<{ directory?: string }> };\n    for (const entry of parsed.sessions ?? []) {\n      const dir = entry.directory;\n      if (!dir) continue;\n      try {\n        const real = realpathSync(dir);\n        if (!existsSync(real)) continue;\n        const encoded = encodeDir(real);\n        map.set(encoded, real);\n      } catch {\n        // Unresolvable path — skip\n      }\n    }\n  } catch {\n    // Unparseable — return empty map\n  }\n  return map;\n}\n\n// ---------------------------------------------------------------------------\n// Config helpers\n// ---------------------------------------------------------------------------\n\nconst CLAUDE_PROJECTS_DIR = join(homedir(), \".claude\", \"projects\");\nconst PAI_CONFIG_DIR = join(homedir(), \".pai\");\nconst PAI_CONFIG_FILE = join(PAI_CONFIG_DIR, \"config.json\");\n\ninterface PaiConfig {\n  scan_dirs: string[];\n}\n\nexport function loadScanConfig(): PaiConfig {\n  if (!existsSync(PAI_CONFIG_FILE)) return { scan_dirs: [] };\n  try {\n    return JSON.parse(readFileSync(PAI_CONFIG_FILE, \"utf8\")) as PaiConfig;\n  } catch {\n    return { scan_dirs: [] };\n  }\n}\n\nexport function saveScanConfig(config: PaiConfig): void {\n  mkdirSync(PAI_CONFIG_DIR, { recursive: true });\n  writeFileSync(PAI_CONFIG_FILE, JSON.stringify(config, null, 2) + \"\\n\", \"utf8\");\n}\n\n/**\n * Resolve a path to its canonical form, falling back to the input.\n *\n * Every path that becomes a `projects.root_path` must go through this. That\n * column is UNIQUE, so two spellings of one directory create two projects and\n * split session history between them. The spellings are not hypothetical: a\n * configured scan_dir of `~/dev/ai` (where `~/dev` is a symlink) makes every\n * project under it register under the symlinked path, while a session started\n * from the resolved path registers a rival row.\n */\nexport function canonicalPath(p: string): string {\n  try {\n    return realpathSync(p);\n  } catch {\n    return p;\n  }\n}\n\nexport function resolveHome(p: string): string {\n  if (p.startsWith(\"~/\")) return join(homedir(), p.slice(2));\n  return resolve(p);\n}\n\n// ---------------------------------------------------------------------------\n// File discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Recursively find all .md files in a directory, including YYYY/MM subdirectories.\n * Returns filenames (basename only).\n */\nexport function findNoteFiles(dir: string): string[] {\n  const results: string[] = [];\n  if (!existsSync(dir)) return results;\n\n  for (const entry of readdirSync(dir, { withFileTypes: true })) {\n    if (entry.isFile() && entry.name.endsWith(\".md\")) {\n      results.push(entry.name);\n    } else if (entry.isDirectory() && /^\\d{4}$/.test(entry.name)) {\n      const yearDir = join(dir, entry.name);\n      for (const monthEntry of readdirSync(yearDir, { withFileTypes: true })) {\n        if (monthEntry.isDirectory() && /^\\d{2}$/.test(monthEntry.name)) {\n          const monthDir = join(yearDir, monthEntry.name);\n          for (const noteEntry of readdirSync(monthDir, { withFileTypes: true })) {\n            if (noteEntry.isFile() && noteEntry.name.endsWith(\".md\")) {\n              results.push(noteEntry.name);\n            }\n          }\n        }\n      }\n    }\n  }\n  return results;\n}\n\n// ---------------------------------------------------------------------------\n// Scan result type\n// ---------------------------------------------------------------------------\n\nexport interface ScanResult {\n  projectsScanned: number;\n  projectsNew: number;\n  projectsUpdated: number;\n  sessionsScanned: number;\n  sessionsNew: number;\n  skipped: string[];\n}\n\n// ---------------------------------------------------------------------------\n// Core scan logic\n// ---------------------------------------------------------------------------\n\nexport function performScan(db: Database): ScanResult {\n  const result: ScanResult = {\n    projectsScanned: 0,\n    projectsNew: 0,\n    projectsUpdated: 0,\n    sessionsScanned: 0,\n    sessionsNew: 0,\n    skipped: [],\n  };\n\n  if (!existsSync(CLAUDE_PROJECTS_DIR)) {\n    throw new Error(`Claude projects directory not found: ${CLAUDE_PROJECTS_DIR}`);\n  }\n\n  const entries = readdirSync(CLAUDE_PROJECTS_DIR).filter((name) => {\n    const full = join(CLAUDE_PROJECTS_DIR, name);\n    return statSync(full).isDirectory();\n  });\n\n  const lookupMap = buildEncodedDirMap();\n  const clcMap = buildClcDirMap();\n\n  for (const encodedDir of entries) {\n    let rootPath = decodeEncodedDir(encodedDir, lookupMap);\n\n    // If the decoded path doesn't exist, try the clc session.json fallback map.\n    // The clc map is keyed by encodeDir(realpathSync(directory)), so paths that\n    // were registered by clc but not in session-registry.json can be recovered.\n    if (!existsSync(rootPath) && clcMap.has(encodedDir)) {\n      const clcPath = clcMap.get(encodedDir)!;\n      if (existsSync(clcPath)) {\n        rootPath = clcPath;\n      }\n    }\n\n    if (!existsSync(rootPath)) {\n      result.skipped.push(`${encodedDir} (decoded: ${rootPath} — path not found on disk)`);\n      result.projectsScanned++;\n      continue;\n    }\n\n    // Canonicalize before upserting.\n    //\n    // ~/.claude/projects/ holds one encoded entry per path *spelling*, so a\n    // directory reachable through a symlinked prefix (~/dev -> Cloud/Development)\n    // appears twice. Decoding each to its literal path registers two projects\n    // for one directory, and session history then splits between them —\n    // whichever spelling the shell used gets the session.\n    //\n    // upsertProject looks up by root_path first, so resolving here makes the\n    // second spelling land on the row the first one created instead of\n    // creating a rival. Both encoded_dir values stay valid for locating\n    // central notes; only the project identity is unified.\n    rootPath = canonicalPath(rootPath);\n\n    const slug = slugify(basename(rootPath) || encodedDir);\n    const { id, isNew } = upsertProject(db, slug, rootPath, encodedDir);\n\n    result.projectsScanned++;\n    if (isNew) result.projectsNew++;\n    else result.projectsUpdated++;\n\n    try {\n      ensurePaiMarker(rootPath, slug);\n    } catch {\n      // Non-fatal\n    }\n\n    const claudeNotesDir = join(CLAUDE_PROJECTS_DIR, encodedDir, \"Notes\");\n\n    if (existsSync(claudeNotesDir)) {\n      const rootNotesDir = join(rootPath, \"Notes\");\n      if (claudeNotesDir !== rootNotesDir) {\n        db.prepare(\n          \"UPDATE projects SET claude_notes_dir = ?, updated_at = ? WHERE id = ?\"\n        ).run(claudeNotesDir, Date.now(), id);\n      }\n    }\n\n    if (!existsSync(claudeNotesDir)) continue;\n\n    const noteFiles = findNoteFiles(claudeNotesDir);\n\n    for (const filename of noteFiles) {\n      const parsed = parseSessionFilename(filename);\n      if (!parsed) continue;\n\n      result.sessionsScanned++;\n      const isNewSession = upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n      if (isNewSession) result.sessionsNew++;\n    }\n  }\n\n  // Phase 2: Scan project-root Notes/ for all registered active projects\n  {\n    const activeProjects = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE status = 'active'\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const project of activeProjects) {\n      const notesDir = join(project.root_path, \"Notes\");\n      if (!existsSync(notesDir)) continue;\n\n      let files: string[];\n      try {\n        files = findNoteFiles(notesDir);\n      } catch {\n        continue;\n      }\n\n      for (const filename of files) {\n        const parsed = parseSessionFilename(filename);\n        if (!parsed) continue;\n\n        result.sessionsScanned++;\n        const isNewSession = upsertSession(db, project.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename);\n        if (isNewSession) result.sessionsNew++;\n      }\n    }\n  }\n\n  // Phase 3: Scan extra directories from config\n  const config = loadScanConfig();\n  if (config.scan_dirs.length) {\n    for (const rawDir of config.scan_dirs) {\n      const scanDir = resolveHome(rawDir);\n      if (!existsSync(scanDir)) {\n        result.skipped.push(`${rawDir} (configured scan_dir not found)`);\n        continue;\n      }\n\n      const children = readdirSync(scanDir).filter((name) => {\n        if (name.startsWith(\".\")) return false;\n        const full = join(scanDir, name);\n        try { return statSync(full).isDirectory(); } catch { return false; }\n      });\n\n      for (const child of children) {\n        // Canonicalize: a scan_dir of \"~/dev/ai\" (symlinked prefix) would\n        // otherwise register every project under the symlinked spelling and\n        // duplicate anything already registered under the resolved one.\n        const childPath = canonicalPath(join(scanDir, child));\n        const childSlug = slugify(child);\n        const childEncoded = encodeDir(childPath);\n\n        const existing = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(childPath) as { id: number } | undefined;\n\n        if (existing) {\n          result.projectsScanned++;\n          result.projectsUpdated++;\n\n          try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n          const notesDir = join(childPath, \"Notes\");\n          if (existsSync(notesDir)) {\n            const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n            for (const filename of noteFiles) {\n              const parsed = parseSessionFilename(filename);\n              if (!parsed) continue;\n              result.sessionsScanned++;\n              if (upsertSession(db, existing.id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n                result.sessionsNew++;\n              }\n            }\n          }\n          continue;\n        }\n\n        const { id, isNew } = upsertProject(db, childSlug, childPath, childEncoded);\n        result.projectsScanned++;\n        if (isNew) result.projectsNew++;\n        else result.projectsUpdated++;\n\n        try { ensurePaiMarker(childPath, childSlug); } catch { /* non-fatal */ }\n\n        const notesDir = join(childPath, \"Notes\");\n        if (existsSync(notesDir)) {\n          const noteFiles = readdirSync(notesDir).filter((f) => f.endsWith(\".md\"));\n          for (const filename of noteFiles) {\n            const parsed = parseSessionFilename(filename);\n            if (!parsed) continue;\n            result.sessionsScanned++;\n            if (upsertSession(db, id, parsed.number, parsed.date, parsed.slug, parsed.title, parsed.filename)) {\n              result.sessionsNew++;\n            }\n          }\n        }\n      }\n    }\n  }\n\n  // Phase 4: Discover PAI.md markers in scan_dirs\n  if (config.scan_dirs.length) {\n    const resolvedScanDirs = config.scan_dirs.map(resolveHome).filter(existsSync);\n    const markers = discoverPaiMarkers(resolvedScanDirs);\n\n    for (const marker of markers) {\n      const registeredRow = db\n        .prepare(\"SELECT id, root_path, slug FROM projects WHERE slug = ?\")\n        .get(marker.slug) as { id: number; root_path: string; slug: string } | undefined;\n\n      if (!registeredRow) continue;\n\n      // The marker was found by walking a scan_dir, so its projectRoot carries\n      // whatever spelling that dir used. Canonicalize before comparing —\n      // otherwise this \"repair\" step rewrites a correct root_path back to the\n      // symlinked form on every scan, undoing any deduplication.\n      const markerRoot = canonicalPath(marker.projectRoot);\n\n      if (registeredRow.root_path !== markerRoot) {\n        const newEncoded = encodeDir(markerRoot);\n        const now4 = Date.now();\n\n        const encodedOwner = db\n          .prepare(\"SELECT id FROM projects WHERE encoded_dir = ?\")\n          .get(newEncoded) as { id: number } | undefined;\n        const pathOwner = db\n          .prepare(\"SELECT id FROM projects WHERE root_path = ?\")\n          .get(markerRoot) as { id: number } | undefined;\n\n        const encodedSafe = !encodedOwner || encodedOwner.id === registeredRow.id;\n        const pathSafe = !pathOwner || pathOwner.id === registeredRow.id;\n\n        if (encodedSafe && pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, encoded_dir = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, newEncoded, now4, registeredRow.id);\n        } else if (pathSafe) {\n          db.prepare(\n            \"UPDATE projects SET root_path = ?, updated_at = ? WHERE id = ?\"\n          ).run(markerRoot, now4, registeredRow.id);\n        }\n      }\n    }\n  }\n\n  // Phase 5: Backfill display_name for rows where it still equals the slug.\n  // This converts legacy entries created before the basename-based naming was\n  // introduced: \"jobs-grazyna\" → \"Jobs Grazyna\" (from basename of root_path).\n  {\n    const stale = db\n      .prepare(\"SELECT id, slug, root_path FROM projects WHERE display_name = slug AND root_path IS NOT NULL AND root_path != ''\")\n      .all() as { id: number; slug: string; root_path: string }[];\n\n    for (const row of stale) {\n      const name = basename(row.root_path);\n      if (name && name !== row.slug) {\n        db.prepare(\"UPDATE projects SET display_name = ?, updated_at = ? WHERE id = ?\")\n          .run(name, Date.now(), row.id);\n      }\n    }\n  }\n\n  return result;\n}\n\n// ---------------------------------------------------------------------------\n// cmdScan\n// ---------------------------------------------------------------------------\n\n/**\n * Run the registry scan CLI command.\n *\n * @param opts.quick  When true, skips verbose output (same scan, less noise).\n *                    The underlying scan is always incremental via upsert —\n *                    this flag exists for hook/daemon-triggered invocations that\n *                    want minimal log output.\n */\nexport function cmdScan(db: Database, opts: { quick?: boolean } = {}): void {\n  const config = loadScanConfig();\n  if (!opts.quick) {\n    console.log(dim(\"Scanning ~/.claude/projects/ ...\"));\n    if (config.scan_dirs.length) {\n      console.log(dim(`Scanning ${config.scan_dirs.length} extra dir(s): ${config.scan_dirs.join(\", \")}`));\n    }\n    console.log(dim(\"Scanning project-root Notes/ directories ...\"));\n  }\n\n  let result: ScanResult;\n  try {\n    result = performScan(db);\n  } catch (e) {\n    console.error(err(String(e)));\n    process.exit(1);\n  }\n\n  if (!opts.quick) {\n    console.log(\n      ok(`Scanned ${bold(String(result.projectsScanned))} projects, ${bold(String(result.sessionsScanned))} session notes.`)\n    );\n    console.log(dim(`  Projects: ${result.projectsNew} new, ${result.projectsUpdated} updated`));\n    console.log(dim(`  Sessions: ${result.sessionsNew} new`));\n\n    if (result.skipped.length) {\n      console.log();\n      console.log(warn(`  ${result.skipped.length} project(s) skipped (path not found on disk):`));\n      for (const s of result.skipped.slice(0, 10)) {\n        console.log(dim(`    ${s}`));\n      }\n      if (result.skipped.length > 10) {\n        console.log(dim(`    ... and ${result.skipped.length - 10} more`));\n      }\n    }\n  } else {\n    // Quick mode: single compact line (stderr so it doesn't pollute pipe output)\n    process.stderr.write(\n      `[registry-scan] ${result.projectsScanned} projects, ${result.sessionsScanned} sessions ` +\n      `(${result.projectsNew}+${result.sessionsNew} new).\\n`\n    );\n  }\n}\n","/**\n * triple-extraction-prompt.ts — Prompt template for KG triple extraction.\n *\n * Used by the session-summary-worker to extract structured facts from\n * a completed session summary and store them in the temporal knowledge graph.\n */\n\nexport function buildTripleExtractionPrompt(params: {\n  sessionContent: string;\n  projectSlug: string;\n  gitLog: string;\n}): string {\n  return `Extract structured entities and relations from this coding session.\n\nOutput a single JSON object with two arrays: \"entities\" and \"relations\".\n\nEntity types: project | person | concept | tool | file | version | decision | technology | organization\n\nRules:\n- Be SPECIFIC: entity names must be concrete (e.g., \"FSRS\", \"Glidr\", \"Matthias\")\n- Use snake_case relation verb phrases (e.g., \"uses_algorithm\", \"decided_to\", \"shipped_version\")\n- Skip opinions, speculation, and \"we should\" statements\n- Skip entities obvious from project metadata unless they have a meaningful relation\n- Maximum 15 relations per session — pick the most important\n- Each entity should have a brief description (1 sentence, what it is in this context)\n- Each relation must reference entity names that appear in the entities array\n\nExample output:\n{\n  \"entities\": [\n    {\"name\": \"Glidr\", \"type\": \"project\", \"description\": \"Flashcard app using FSRS spaced repetition\"},\n    {\"name\": \"FSRS\", \"type\": \"concept\", \"description\": \"Free Spaced Repetition Scheduler algorithm\"},\n    {\"name\": \"Matthias\", \"type\": \"person\", \"description\": \"Developer of Glidr and Quassl\"},\n    {\"name\": \"Quassl\", \"type\": \"project\", \"description\": \"iOS app being rewritten in Flutter\"},\n    {\"name\": \"Flutter\", \"type\": \"technology\", \"description\": \"Cross-platform mobile framework\"}\n  ],\n  \"relations\": [\n    {\"source\": \"Glidr\", \"relation\": \"uses_algorithm\", \"target\": \"FSRS\"},\n    {\"source\": \"Glidr\", \"relation\": \"shipped_version\", \"target\": \"1.0.5\"},\n    {\"source\": \"Matthias\", \"relation\": \"decided_to_rewrite\", \"target\": \"Quassl\"},\n    {\"source\": \"Quassl\", \"relation\": \"migrating_to\", \"target\": \"Flutter\"}\n  ]\n}\n\nPROJECT: ${params.projectSlug}\n\nSESSION CONTENT:\n${params.sessionContent}\n\nGIT COMMITS:\n${params.gitLog}\n\nJSON object (entities + relations):`;\n}\n","/**\n * kg-extraction.ts — Shared KG triple extraction logic.\n *\n * Extracted from session-summary-worker.ts so both the worker and the\n * CLI backfill (`pai kg backfill`) can use the same code path.\n *\n * Provides:\n *   - findClaudeBinary()       — locate the claude CLI\n *   - spawnClaude()            — generic prompt -> response runner (strips ANTHROPIC_API_KEY)\n *   - extractAndStoreTriples() — run the extractor prompt and persist triples to Postgres\n */\n\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\nimport type { Pool } from \"pg\";\nimport type { Database } from \"better-sqlite3\";\n\nimport { buildTripleExtractionPrompt } from \"../daemon/templates/triple-extraction-prompt.js\";\nimport { kgAdd, kgQuery, kgInvalidate } from \"./kg.js\";\nimport { upsertKgEntity } from \"./kg-entity.js\";\n\n// ---------------------------------------------------------------------------\n// Claude CLI binary discovery\n// ---------------------------------------------------------------------------\n\n/**\n * Find the `claude` CLI binary. Checks common installation locations first\n * (launchd PATH is minimal so bare \"claude\" often won't resolve).\n */\nexport function findClaudeBinary(): string | null {\n  const candidates = [\n    join(homedir(), \".local\", \"bin\", \"claude\"),\n    join(homedir(), \".claude\", \"local\", \"claude\"),\n    \"/usr/local/bin/claude\",\n    \"/opt/homebrew/bin/claude\",\n  ];\n\n  for (const candidate of candidates) {\n    try {\n      if (existsSync(candidate)) return candidate;\n    } catch { /* skip */ }\n  }\n  return \"claude\";\n}\n\nconst CLAUDE_TIMEOUT_MS: Record<string, number> = {\n  haiku: 60_000,\n  sonnet: 120_000,\n  opus: 300_000,\n};\n\n/**\n * Spawn the claude CLI with a prompt on stdin and return stdout.\n *\n * IMPORTANT: ANTHROPIC_API_KEY is stripped from the spawned environment so\n * the CLI uses the user's Max plan (free) instead of billing the API key.\n */\nexport async function spawnClaude(\n  prompt: string,\n  model: \"haiku\" | \"sonnet\" | \"opus\" = \"sonnet\"\n): Promise<string | null> {\n  const claudeBin = findClaudeBinary();\n  if (!claudeBin) {\n    process.stderr.write(\"[kg-extraction] claude CLI not found.\\n\");\n    return null;\n  }\n\n  const { spawn } = await import(\"node:child_process\");\n\n  return new Promise((resolve) => {\n    let timer: ReturnType<typeof setTimeout> | null = null;\n\n    const { ANTHROPIC_API_KEY: _drop, ...envWithoutApiKey } = process.env;\n    const child = spawn(\n      claudeBin,\n      [\"--model\", model, \"-p\", \"--no-session-persistence\"],\n      { env: envWithoutApiKey, stdio: [\"pipe\", \"pipe\", \"pipe\"] }\n    );\n\n    let stdout = \"\";\n    let stderr = \"\";\n\n    child.stdout.on(\"data\", (chunk: Buffer) => { stdout += chunk.toString(); });\n    child.stderr.on(\"data\", (chunk: Buffer) => { stderr += chunk.toString(); });\n\n    child.on(\"error\", (err: Error) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      process.stderr.write(`[kg-extraction] ${model} spawn error: ${err.message}\\n`);\n      resolve(null);\n    });\n\n    child.on(\"close\", (code: number | null) => {\n      if (timer) { clearTimeout(timer); timer = null; }\n      if (code !== 0) {\n        process.stderr.write(\n          `[kg-extraction] ${model} exited ${code}: ${stderr.slice(0, 300)}\\n`\n        );\n        resolve(null);\n      } else {\n        resolve(stdout.trim() || null);\n      }\n    });\n\n    timer = setTimeout(() => {\n      process.stderr.write(`[kg-extraction] ${model} timed out — killing process.\\n`);\n      child.kill(\"SIGTERM\");\n      resolve(null);\n    }, CLAUDE_TIMEOUT_MS[model] ?? 120_000);\n\n    child.stdin.write(prompt);\n    child.stdin.end();\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Triple extraction\n// ---------------------------------------------------------------------------\n\nexport interface ExtractTriplesParams {\n  summaryText: string;\n  projectSlug: string;\n  projectId: number | null;\n  sessionId: string;\n  gitLog?: string;\n  model?: \"haiku\" | \"sonnet\" | \"opus\";\n  /** Optional federation SQLite db — when provided, entities are upserted into kg_entities (QW1) */\n  federationDb?: Database;\n  /** Tenant ID for multi-tenant entity scoping (default: \"default\") */\n  tenantId?: string;\n}\n\nexport interface ExtractTriplesResult {\n  extracted: number;\n  added: number;\n  superseded: number;\n}\n\n/**\n * Extract structured KG triples from a session summary and store them in\n * Postgres. Idempotent: if a (subject, predicate) pair already has the same\n * object, no new row is added; if the object differs, the old triple is\n * invalidated (valid_to = NOW()) and a new one is inserted.\n *\n * Best-effort: per-triple errors are caught and logged but never thrown.\n * Returns a small stats object so callers can report progress.\n */\nexport async function extractAndStoreTriples(\n  pool: Pool,\n  params: ExtractTriplesParams\n): Promise<ExtractTriplesResult> {\n  const stats: ExtractTriplesResult = { extracted: 0, added: 0, superseded: 0 };\n\n  const prompt = buildTripleExtractionPrompt({\n    sessionContent: params.summaryText,\n    projectSlug: params.projectSlug,\n    gitLog: params.gitLog ?? \"\",\n  });\n\n  const jsonOutput = await spawnClaude(prompt, params.model ?? \"sonnet\");\n  if (!jsonOutput) return stats;\n\n  // Strip markdown code fences if Claude wrapped the JSON\n  const cleaned = jsonOutput\n    .replace(/^```json\\s*/m, \"\")\n    .replace(/^```\\s*/m, \"\")\n    .replace(/\\s*```$/m, \"\")\n    .trim();\n\n  // Support both legacy array format and new structured format\n  type LegacyTriple = { subject: string; predicate: string; object: string };\n  type NewRelation = { source: string; relation: string; target: string };\n  type NewEntity = { name: string; type: string; description: string };\n  type NewFormat = { entities: NewEntity[]; relations: NewRelation[] };\n\n  let triples: Array<LegacyTriple>;\n  try {\n    const parsed = JSON.parse(cleaned);\n\n    if (Array.isArray(parsed)) {\n      // Legacy format: [{subject, predicate, object}]\n      triples = parsed;\n    } else if (parsed && typeof parsed === \"object\" && Array.isArray(parsed.relations)) {\n      // New structured format: {entities: [...], relations: [...]}\n      const newFmt = parsed as NewFormat;\n\n      // QW1: Upsert entities into federation SQLite kg_entities table when db is available\n      if (params.federationDb && Array.isArray(newFmt.entities)) {\n        const tenantId = params.tenantId ?? \"default\";\n        for (const entity of newFmt.entities) {\n          if (!entity.name) continue;\n          try {\n            upsertKgEntity(params.federationDb, {\n              name: entity.name,\n              type: entity.type ?? \"unknown\",\n              description: entity.description,\n              tenantId,\n            });\n          } catch (entityErr) {\n            process.stderr.write(`[kg-extraction] entity upsert error (${entity.name}): ${entityErr}\\n`);\n          }\n        }\n      }\n\n      triples = newFmt.relations.map((r: NewRelation) => ({\n        subject: r.source,\n        predicate: r.relation,\n        object: r.target,\n      }));\n    } else {\n      process.stderr.write(`[kg-extraction] Unexpected JSON shape — neither array nor {entities,relations}\\n`);\n      return stats;\n    }\n  } catch (e) {\n    process.stderr.write(`[kg-extraction] JSON parse failed: ${e}\\n`);\n    return stats;\n  }\n\n  if (!Array.isArray(triples)) return stats;\n  stats.extracted = triples.length;\n\n  for (const t of triples) {\n    if (!t.subject || !t.predicate || !t.object) continue;\n\n    try {\n      const existing = await kgQuery(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        project_id: params.projectId ?? undefined,\n      });\n\n      // If an identical (subject, predicate, object) is already valid, skip — idempotent\n      const alreadyValid = existing.find((e) => e.object === t.object && !e.valid_to);\n      if (alreadyValid) continue;\n\n      // Invalidate any superseded triple (same subject+predicate, different object)\n      const supersedes = existing.find((e) => e.object !== t.object && !e.valid_to);\n      if (supersedes) {\n        await kgInvalidate(pool, supersedes.id);\n        stats.superseded++;\n      }\n\n      await kgAdd(pool, {\n        subject: t.subject,\n        predicate: t.predicate,\n        object: t.object,\n        project_id: params.projectId ?? undefined,\n        source_session: params.sessionId,\n        confidence: \"EXTRACTED\",\n      });\n      stats.added++;\n    } catch (tripleErr) {\n      process.stderr.write(`[kg-extraction] store error (${t.subject}): ${tripleErr}\\n`);\n    }\n  }\n\n  return stats;\n}\n","/**\n * Shared \"## Continue\" checkpoint logic for a project's TODO.md.\n *\n * WHY THIS MODULE EXISTS\n * ----------------------\n * Before this, `pause.ts` and `handover.ts` each carried their own copy of\n * findProjectTodo / stripContinueSection / block-builder. Both wrote the same\n * fixed four-line block, and both stripped any existing ## Continue section\n * unconditionally. The consequence was that a rich, model-authored checkpoint\n * could never survive:\n *\n *   1. `pai pause` had no way to accept a body, so the model printed its\n *      checkpoint to the terminal and it was lost.\n *   2. Even if a body had been written by hand, the session-stop hook runs\n *      `pai session handover` on every clean exit, which regenerated the\n *      generic block and erased it.\n *\n * So there are two jobs here:\n *\n *   - AUTHORED writes (`pai pause --body-file`) carry the model's markdown\n *     verbatim, wrapped in explicit start/end markers.\n *   - AUTO writes (hooks) must never destroy an authored checkpoint belonging\n *     to the *same* session. They may replace a stale one left by an earlier\n *     session, otherwise TODO.md would show a checkpoint that no longer\n *     describes where the work stands.\n *\n * PARSING\n * -------\n * A rich body can legitimately contain `---` rules and `##` headings, which the\n * old heuristic scanner treated as section terminators. Authored blocks are\n * therefore delimited by an explicit HTML-comment pair; the legacy heuristic is\n * kept only as a fallback for blocks written before this change.\n */\n\nimport {\n  existsSync,\n  readFileSync,\n  writeFileSync,\n  readdirSync,\n  renameSync,\n  mkdirSync,\n  realpathSync,\n} from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Locations searched for a project TODO.md, in priority order. */\nexport const TODO_LOCATIONS = [\n  \"Notes/TODO.md\",\n  \".claude/Notes/TODO.md\",\n  \"tasks/todo.md\",\n  \"TODO.md\",\n];\n\nexport const MARKER_OPEN = \"<!-- pai:checkpoint\";\nexport const MARKER_CLOSE = \"<!-- /pai:checkpoint -->\";\n\nexport const CONTINUE_HEADING = \"## Continue\";\n\n/** Who wrote the checkpoint currently in TODO.md. */\nexport type Authorship = \"model\" | \"auto\";\n\n/** Result of applying a checkpoint. */\nexport type ApplyAction = \"written\" | \"preserved\" | \"failed\";\n\n// ---------------------------------------------------------------------------\n// TODO.md discovery\n// ---------------------------------------------------------------------------\n\nexport function findProjectTodo(\n  rootPath: string\n): { path: string; content: string } | null {\n  for (const rel of TODO_LOCATIONS) {\n    const full = join(rootPath, rel);\n    if (existsSync(full)) {\n      try {\n        return { path: full, content: readFileSync(full, \"utf8\") };\n      } catch {\n        // unreadable — try next\n      }\n    }\n  }\n  return null;\n}\n\n/**\n * Resolve the TODO.md to write to, creating Notes/ if nothing exists yet.\n * Returns null only when the directory could not be created.\n */\nexport function resolveTodoTarget(\n  rootPath: string,\n  opts: { create?: boolean } = {}\n): { path: string; content: string } | null {\n  const found = findProjectTodo(rootPath);\n  if (found) return found;\n\n  const notesDir = join(rootPath, \"Notes\");\n  if (opts.create !== false) {\n    try {\n      if (!existsSync(notesDir)) mkdirSync(notesDir, { recursive: true });\n    } catch {\n      return null;\n    }\n  }\n  return { path: join(notesDir, \"TODO.md\"), content: \"\" };\n}\n\n// ---------------------------------------------------------------------------\n// Marker parsing\n// ---------------------------------------------------------------------------\n\nexport interface CheckpointMeta {\n  authored: Authorship;\n  /** Session line the checkpoint describes, e.g. \"0003 - 2026-08-01 - Title\". */\n  session?: string;\n  /** Claude Code session UUID, when known. */\n  sessionId?: string;\n  ts?: string;\n}\n\n/**\n * Parse a `<!-- pai:checkpoint key=\"value\" ... -->` marker line.\n * Returns null when the line is not a marker.\n */\nexport function parseMarker(line: string): CheckpointMeta | null {\n  const trimmed = line.trim();\n  if (!trimmed.startsWith(MARKER_OPEN)) return null;\n\n  const attrs: Record<string, string> = {};\n  for (const m of trimmed.matchAll(/([a-zA-Z][\\w-]*)=\"([^\"]*)\"/g)) {\n    attrs[m[1]] = m[2];\n  }\n\n  return {\n    authored: attrs.authored === \"model\" ? \"model\" : \"auto\",\n    session: attrs.session || undefined,\n    sessionId: attrs[\"session-id\"] || undefined,\n    ts: attrs.ts || undefined,\n  };\n}\n\nexport interface LocatedContinue {\n  /** Index of the \"## Continue\" heading line. */\n  startIdx: number;\n  /** Exclusive end index, past any trailing `---` separator. */\n  endIdx: number;\n  meta: CheckpointMeta | null;\n  /** Raw lines of the section, heading included. */\n  lines: string[];\n}\n\n/**\n * Lines an auto-generated block is made of. Anything else in a section is\n * content somebody put there deliberately.\n */\nconst BOILERPLATE_PATTERNS = [\n  /^##\\s+Continue$/,\n  /^<!--\\s*\\/?pai:checkpoint/,\n  /^>\\s*\\*\\*Last session:\\*\\*/,\n  /^>\\s*\\*\\*Paused at:\\*\\*/,\n  /^>\\s*Working directory:/,\n  /^>\\s*Resume with:/,\n  /^>\\s*_No checkpoint body was recorded/,\n  /^>?\\s*$/,\n  /^-{3,}$/,\n];\n\n/**\n * True when a section contains nothing but generated header lines.\n *\n * This is the guard that stops an auto write from destroying content it did\n * not author. A session that hit the old clobbering bug may have worked around\n * it by hand — writing its state into a subsection underneath the generated\n * header lines, in an unmarked block. Those blocks predate the marker, so\n * authorship cannot be read off them; the only safe signal is whether anything\n * beyond boilerplate is present.\n */\nexport function isBoilerplateOnly(lines: string[]): boolean {\n  return lines.every((line) => {\n    const t = line.trim();\n    return BOILERPLATE_PATTERNS.some((re) => re.test(t));\n  });\n}\n\n/** Extract the non-boilerplate content of a section, or \"\" if there is none. */\nexport function extractSectionContent(lines: string[]): string {\n  const kept: string[] = [];\n  for (const line of lines) {\n    const t = line.trim();\n    if (BOILERPLATE_PATTERNS.some((re) => re.test(t))) continue;\n    kept.push(line);\n  }\n  return kept.join(\"\\n\").trim();\n}\n\n/**\n * Locate the existing ## Continue section.\n *\n * When the section carries an explicit marker pair, the close marker defines\n * the end — this is what lets a rich body contain `---` and `##` safely.\n * Otherwise the legacy heuristic applies: stop at the first `---` or the next\n * `##` heading.\n */\nexport function locateContinue(content: string): LocatedContinue | null {\n  const lines = content.split(\"\\n\");\n  const startIdx = lines.findIndex((l) => l.trim() === CONTINUE_HEADING);\n  if (startIdx === -1) return null;\n\n  // Look for an open marker in the first few lines of the section.\n  let meta: CheckpointMeta | null = null;\n  let markerIdx = -1;\n  for (let i = startIdx + 1; i < Math.min(startIdx + 6, lines.length); i++) {\n    const parsed = parseMarker(lines[i]);\n    if (parsed) {\n      meta = parsed;\n      markerIdx = i;\n      break;\n    }\n    // A non-blank, non-marker line means there is no marker for this section.\n    if (lines[i].trim() !== \"\") break;\n  }\n\n  let endIdx = lines.length;\n\n  if (markerIdx !== -1) {\n    const closeIdx = lines.findIndex(\n      (l, i) => i > markerIdx && l.trim() === MARKER_CLOSE\n    );\n    if (closeIdx !== -1) {\n      endIdx = closeIdx + 1;\n    } else {\n      // Malformed (open without close) — fall back to the heuristic so we do\n      // not swallow the rest of the file.\n      endIdx = heuristicEnd(lines, startIdx);\n    }\n  } else {\n    endIdx = heuristicEnd(lines, startIdx);\n  }\n\n  // Consume one trailing `---` separator and the blank lines around it.\n  let trailingEnd = endIdx;\n  while (trailingEnd < lines.length && lines[trailingEnd].trim() === \"\") {\n    trailingEnd += 1;\n  }\n  if (trailingEnd < lines.length && lines[trailingEnd].trim() === \"---\") {\n    trailingEnd += 1;\n  } else {\n    trailingEnd = endIdx;\n  }\n\n  return {\n    startIdx,\n    endIdx: trailingEnd,\n    meta,\n    lines: lines.slice(startIdx, trailingEnd),\n  };\n}\n\n/**\n * Legacy scanner for blocks written before checkpoint markers existed.\n *\n * Terminates on a horizontal rule or the next level-2 heading. Note the\n * `(?!#)` — `###` is a *subsection* of `## Continue`, not a terminator. The\n * original scanner stopped at any run of `#`, which meant a `### Restored\n * state` subsection fell outside the section entirely and could not be seen,\n * let alone carried forward.\n */\nfunction heuristicEnd(lines: string[], startIdx: number): number {\n  for (let i = startIdx + 1; i < lines.length; i++) {\n    const trimmed = lines[i].trim();\n    if (\n      trimmed === \"---\" ||\n      (/^##(?!#)/.test(trimmed) && trimmed !== CONTINUE_HEADING)\n    ) {\n      return i;\n    }\n  }\n  return lines.length;\n}\n\n/** Remove the ## Continue section, returning the remainder of the document. */\nexport function stripContinue(content: string): string {\n  const found = locateContinue(content);\n  if (!found) return content;\n\n  const lines = content.split(\"\\n\");\n  const before = lines.slice(0, found.startIdx);\n  const after = lines.slice(found.endIdx);\n  while (after.length > 0 && after[0].trim() === \"\") after.shift();\n\n  return [...before, ...after].join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Reading a checkpoint back\n// ---------------------------------------------------------------------------\n\nexport interface ContinueCheckpoint {\n  meta: CheckpointMeta | null;\n  /** The authored body — the section with generated header lines removed. */\n  body: string;\n  /** The full section, heading included. */\n  raw: string;\n}\n\n/**\n * Read the `## Continue` checkpoint out of a TODO.md.\n *\n * Writing a checkpoint is only half of a handover; something has to deliver it\n * to the next session. This is the read side, used by the SessionStart hook.\n *\n * Returns null when there is no section, or when the section holds nothing but\n * generated header lines — a bodyless block carries no information a new\n * session does not already have, and injecting it would only add noise.\n */\nexport function readContinueCheckpoint(\n  content: string\n): ContinueCheckpoint | null {\n  const found = locateContinue(content);\n  if (!found) return null;\n\n  const body = extractSectionContent(found.lines);\n  if (!body) return null;\n\n  return { meta: found.meta, body, raw: found.lines.join(\"\\n\") };\n}\n\n// ---------------------------------------------------------------------------\n// Block construction\n// ---------------------------------------------------------------------------\n\nexport interface BuildOptions {\n  authored: Authorship;\n  /** Human-readable session line, or \"Unknown session\". */\n  sessionLine: string;\n  /** Claude Code session UUID — the `claude --resume` handle. */\n  sessionId?: string;\n  cwd: string;\n  /** Model-authored markdown. Omitted for auto blocks. */\n  body?: string;\n  /** Overridable for deterministic tests. */\n  timestamp?: string;\n}\n\nfunction escapeAttr(value: string): string {\n  return value.replace(/\"/g, \"'\");\n}\n\nexport function buildContinueBlock(opts: BuildOptions): string {\n  const ts = opts.timestamp ?? new Date().toISOString();\n\n  const attrs = [\n    `authored=\"${opts.authored}\"`,\n    `session=\"${escapeAttr(opts.sessionLine)}\"`,\n    opts.sessionId ? `session-id=\"${escapeAttr(opts.sessionId)}\"` : null,\n    `ts=\"${ts}\"`,\n  ]\n    .filter(Boolean)\n    .join(\" \");\n\n  const header = [\n    `> **Last session:** ${opts.sessionLine}`,\n    `> **Paused at:** ${ts}`,\n    \">\",\n    `> Working directory: ${opts.cwd}`,\n  ];\n\n  if (opts.sessionId) {\n    header.push(\">\", `> Resume with: \\`claude --resume ${opts.sessionId}\\``);\n  }\n\n  const body = (opts.body ?? \"\").trim();\n\n  const parts = [\n    CONTINUE_HEADING,\n    \"\",\n    `${MARKER_OPEN} ${attrs} -->`,\n    \"\",\n    ...header,\n  ];\n\n  if (body) {\n    parts.push(\"\", body);\n  } else {\n    parts.push(\n      \">\",\n      \"> _No checkpoint body was recorded — see the latest session note._\"\n    );\n  }\n\n  parts.push(\"\", MARKER_CLOSE, \"\", \"---\", \"\");\n\n  return parts.join(\"\\n\");\n}\n\n// ---------------------------------------------------------------------------\n// Apply\n// ---------------------------------------------------------------------------\n\nexport interface ApplyOptions extends BuildOptions {\n  /** Project root; TODO.md is resolved beneath it. */\n  rootPath: string;\n  /** Preview only — nothing is written. */\n  dryRun?: boolean;\n}\n\nexport interface ApplyResult {\n  action: ApplyAction;\n  path: string | null;\n  block: string;\n  /** Set when action === \"preserved\". */\n  preservedMeta?: CheckpointMeta;\n  /** Set when unattributed content was carried forward into the new block. */\n  carriedForward?: boolean;\n  error?: string;\n}\n\n/**\n * Write the ## Continue block, honouring the preservation rules.\n *\n * An AUTO write is unattended — it fires from the session-stop and pre-compact\n * hooks — so it operates under one governing rule: **never destroy content it\n * did not author.** Three cases follow from that:\n *\n *   1. An authored checkpoint for the SAME session is left untouched. The hooks\n *      fire after the model has already recorded the real state; overwriting it\n *      with metadata is the bug this module exists to fix.\n *   2. An authored checkpoint from an EARLIER session is stale — TODO.md would\n *      otherwise keep pointing at the wrong session — so it is replaced. Its\n *      content is not lost: `pai pause` mirrors every authored body into the\n *      session note.\n *   3. An UNMARKED block predates the marker, so authorship cannot be read off\n *      it. If it is nothing but generated header lines it is replaced. If it\n *      carries anything else, that content was put there deliberately — quite\n *      possibly as a hand-rolled workaround for the very clobbering this fixes —\n *      and is carried forward into the new block rather than dropped.\n *\n * A MODEL write always replaces: the model is authoring the checkpoint, and a\n * newer one supersedes an older one.\n */\nexport function applyContinue(opts: ApplyOptions): ApplyResult {\n  const target = resolveTodoTarget(opts.rootPath, { create: !opts.dryRun });\n  if (!target) {\n    return {\n      action: \"failed\",\n      path: null,\n      block: buildContinueBlock(opts),\n      error: \"Could not resolve or create a TODO.md target\",\n    };\n  }\n\n  const existing = locateContinue(target.content);\n  let carriedForward = false;\n  let effectiveBody = opts.body;\n\n  if (opts.authored === \"auto\" && existing) {\n    // Case 1 — authored, same session: hands off.\n    if (\n      existing.meta?.authored === \"model\" &&\n      existing.meta.session === opts.sessionLine\n    ) {\n      return {\n        action: \"preserved\",\n        path: target.path,\n        block: buildContinueBlock(opts),\n        preservedMeta: existing.meta,\n      };\n    }\n\n    // Case 3 — unmarked block holding content nobody can attribute to us.\n    if (!existing.meta && !isBoilerplateOnly(existing.lines)) {\n      const salvaged = extractSectionContent(existing.lines);\n      if (salvaged) {\n        effectiveBody = [\n          \"_Carried forward from the previous checkpoint (author unknown — this\",\n          \"block predates checkpoint authorship markers):_\",\n          \"\",\n          salvaged,\n        ].join(\"\\n\");\n        carriedForward = true;\n      }\n    }\n  }\n\n  const block = buildContinueBlock({ ...opts, body: effectiveBody });\n\n  if (opts.dryRun) {\n    return { action: \"written\", path: target.path, block, carriedForward };\n  }\n\n  const newContent = block + stripContinue(target.content).trimStart();\n  const tmpPath = `${target.path}.continue.tmp`;\n\n  try {\n    writeFileSync(tmpPath, newContent, \"utf8\");\n    renameSync(tmpPath, target.path);\n  } catch (err) {\n    try {\n      if (existsSync(tmpPath)) renameSync(tmpPath, `${tmpPath}.dead`);\n    } catch {\n      /* ignore */\n    }\n    return {\n      action: \"failed\",\n      path: target.path,\n      block,\n      error: String(err),\n    };\n  }\n\n  return { action: \"written\", path: target.path, block, carriedForward };\n}\n\n// ---------------------------------------------------------------------------\n// Session-note discovery\n//\n// Lifted verbatim from end.ts so pause, end and any future caller share one\n// implementation. end.ts now imports these rather than carrying its own copy.\n// ---------------------------------------------------------------------------\n\n/** PAI_DIR — mirrors pai-paths.ts resolution. */\nfunction getPaiDir(): string {\n  const envDir = process.env.PAI_DIR;\n  if (envDir) {\n    try {\n      return realpathSync(envDir);\n    } catch {\n      return envDir;\n    }\n  }\n  return join(homedir(), \".claude\");\n}\n\n/**\n * Find the notes directory for a project — local first, then the central\n * ~/.claude/projects/<encoded>/Notes fallback. 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