@synsci/cli-darwin-x64 1.1.70 → 1.1.72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/skills/citation-management/SKILL.md +1109 -0
- package/bin/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/bin/skills/citation-management/assets/citation_checklist.md +386 -0
- package/bin/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/bin/skills/citation-management/references/citation_validation.md +794 -0
- package/bin/skills/citation-management/references/google_scholar_search.md +725 -0
- package/bin/skills/citation-management/references/metadata_extraction.md +870 -0
- package/bin/skills/citation-management/references/pubmed_search.md +839 -0
- package/bin/skills/citation-management/scripts/doi_to_bibtex.py +182 -0
- package/bin/skills/citation-management/scripts/extract_metadata.py +570 -0
- package/bin/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/bin/skills/citation-management/scripts/search_google_scholar.py +251 -0
- package/bin/skills/citation-management/scripts/search_pubmed.py +348 -0
- package/bin/skills/citation-management/scripts/validate_citations.py +494 -0
- package/bin/skills/clinical-decision-support/README.md +129 -0
- package/bin/skills/clinical-decision-support/SKILL.md +506 -0
- package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/bin/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
- package/bin/skills/clinical-decision-support/assets/example_gbm_cohort.md +208 -0
- package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/bin/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/bin/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +383 -0
- package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +417 -0
- package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +509 -0
- package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +441 -0
- package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +326 -0
- package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
- package/bin/skills/clinical-reports/README.md +236 -0
- package/bin/skills/clinical-reports/SKILL.md +1127 -0
- package/bin/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
- package/bin/skills/clinical-reports/assets/consult_note_template.md +305 -0
- package/bin/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
- package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
- package/bin/skills/clinical-reports/assets/history_physical_template.md +305 -0
- package/bin/skills/clinical-reports/assets/lab_report_template.md +309 -0
- package/bin/skills/clinical-reports/assets/pathology_report_template.md +249 -0
- package/bin/skills/clinical-reports/assets/quality_checklist.md +338 -0
- package/bin/skills/clinical-reports/assets/radiology_report_template.md +318 -0
- package/bin/skills/clinical-reports/assets/soap_note_template.md +253 -0
- package/bin/skills/clinical-reports/references/case_report_guidelines.md +570 -0
- package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
- package/bin/skills/clinical-reports/references/data_presentation.md +530 -0
- package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
- package/bin/skills/clinical-reports/references/medical_terminology.md +588 -0
- package/bin/skills/clinical-reports/references/patient_documentation.md +744 -0
- package/bin/skills/clinical-reports/references/peer_review_standards.md +585 -0
- package/bin/skills/clinical-reports/references/regulatory_compliance.md +577 -0
- package/bin/skills/clinical-reports/scripts/check_deidentification.py +332 -0
- package/bin/skills/clinical-reports/scripts/compliance_checker.py +78 -0
- package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +97 -0
- package/bin/skills/clinical-reports/scripts/format_adverse_events.py +97 -0
- package/bin/skills/clinical-reports/scripts/generate_report_template.py +149 -0
- package/bin/skills/clinical-reports/scripts/terminology_validator.py +126 -0
- package/bin/skills/clinical-reports/scripts/validate_case_report.py +323 -0
- package/bin/skills/clinical-reports/scripts/validate_trial_report.py +88 -0
- package/bin/skills/fireworks-ai/SKILL.md +665 -0
- package/bin/skills/generate-image/SKILL.md +178 -0
- package/bin/skills/generate-image/scripts/generate_image.py +254 -0
- package/bin/skills/groq/SKILL.md +347 -0
- package/bin/skills/hypothesis-generation/SKILL.md +293 -0
- package/bin/skills/hypothesis-generation/assets/FORMATTING_GUIDE.md +672 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_generation.sty +307 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_report_template.tex +572 -0
- package/bin/skills/hypothesis-generation/references/experimental_design_patterns.md +329 -0
- package/bin/skills/hypothesis-generation/references/hypothesis_quality_criteria.md +198 -0
- package/bin/skills/hypothesis-generation/references/literature_search_strategies.md +622 -0
- package/bin/skills/latex-posters/README.md +417 -0
- package/bin/skills/latex-posters/SKILL.md +1602 -0
- package/bin/skills/latex-posters/assets/baposter_template.tex +257 -0
- package/bin/skills/latex-posters/assets/beamerposter_template.tex +244 -0
- package/bin/skills/latex-posters/assets/poster_quality_checklist.md +358 -0
- package/bin/skills/latex-posters/assets/tikzposter_template.tex +251 -0
- package/bin/skills/latex-posters/references/latex_poster_packages.md +745 -0
- package/bin/skills/latex-posters/references/poster_content_guide.md +748 -0
- package/bin/skills/latex-posters/references/poster_design_principles.md +806 -0
- package/bin/skills/latex-posters/references/poster_layout_design.md +900 -0
- package/bin/skills/latex-posters/scripts/review_poster.sh +214 -0
- package/bin/skills/literature-review/SKILL.md +641 -0
- package/bin/skills/literature-review/assets/review_template.md +412 -0
- package/bin/skills/literature-review/references/citation_styles.md +166 -0
- package/bin/skills/literature-review/references/database_strategies.md +455 -0
- package/bin/skills/literature-review/scripts/generate_pdf.py +184 -0
- package/bin/skills/literature-review/scripts/search_databases.py +310 -0
- package/bin/skills/literature-review/scripts/verify_citations.py +218 -0
- package/bin/skills/market-research-reports/SKILL.md +904 -0
- package/bin/skills/market-research-reports/assets/FORMATTING_GUIDE.md +428 -0
- package/bin/skills/market-research-reports/assets/market_report_template.tex +1380 -0
- package/bin/skills/market-research-reports/assets/market_research.sty +564 -0
- package/bin/skills/market-research-reports/references/data_analysis_patterns.md +548 -0
- package/bin/skills/market-research-reports/references/report_structure_guide.md +999 -0
- package/bin/skills/market-research-reports/references/visual_generation_guide.md +1077 -0
- package/bin/skills/market-research-reports/scripts/generate_market_visuals.py +472 -0
- package/bin/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
- package/bin/skills/markitdown/LICENSE.txt +22 -0
- package/bin/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
- package/bin/skills/markitdown/QUICK_REFERENCE.md +309 -0
- package/bin/skills/markitdown/README.md +184 -0
- package/bin/skills/markitdown/SKILL.md +486 -0
- package/bin/skills/markitdown/SKILL_SUMMARY.md +307 -0
- package/bin/skills/markitdown/assets/example_usage.md +463 -0
- package/bin/skills/markitdown/references/api_reference.md +399 -0
- package/bin/skills/markitdown/references/file_formats.md +542 -0
- package/bin/skills/markitdown/scripts/batch_convert.py +195 -0
- package/bin/skills/markitdown/scripts/convert_literature.py +262 -0
- package/bin/skills/markitdown/scripts/convert_with_ai.py +224 -0
- package/bin/skills/ml-paper-writing/SKILL.md +937 -0
- package/bin/skills/ml-paper-writing/references/checklists.md +361 -0
- package/bin/skills/ml-paper-writing/references/citation-workflow.md +562 -0
- package/bin/skills/ml-paper-writing/references/reviewer-guidelines.md +367 -0
- package/bin/skills/ml-paper-writing/references/sources.md +159 -0
- package/bin/skills/ml-paper-writing/references/writing-guide.md +476 -0
- package/bin/skills/ml-paper-writing/templates/README.md +251 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/README.md +534 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-template.tex +952 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bib +111 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bst +1493 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.sty +315 -0
- package/bin/skills/ml-paper-writing/templates/acl/README.md +50 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl.sty +312 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_latex.tex +377 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_lualatex.tex +101 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_natbib.bst +1940 -0
- package/bin/skills/ml-paper-writing/templates/acl/anthology.bib.txt +26 -0
- package/bin/skills/ml-paper-writing/templates/acl/custom.bib +70 -0
- package/bin/skills/ml-paper-writing/templates/acl/formatting.md +326 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/README.md +3 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bib +11 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bst +1440 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty +218 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex +305 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/fancyhdr.sty +485 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/math_commands.tex +508 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/natbib.sty +1246 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/fancyhdr.sty +485 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bib +24 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bst +1440 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.sty +246 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.tex +414 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/math_commands.tex +508 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/natbib.sty +1246 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/algorithm.sty +79 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/algorithmic.sty +201 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.bib +75 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/example_paper.tex +662 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/fancyhdr.sty +864 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/icml2026.bst +1443 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/icml2026.sty +767 -0
- package/bin/skills/ml-paper-writing/templates/icml2026/icml_numpapers.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/neurips2025/Makefile +36 -0
- package/bin/skills/ml-paper-writing/templates/neurips2025/extra_pkgs.tex +53 -0
- package/bin/skills/ml-paper-writing/templates/neurips2025/main.tex +38 -0
- package/bin/skills/ml-paper-writing/templates/neurips2025/neurips.sty +382 -0
- package/bin/skills/paper-2-web/SKILL.md +491 -0
- package/bin/skills/paper-2-web/references/installation.md +141 -0
- package/bin/skills/paper-2-web/references/paper2poster.md +346 -0
- package/bin/skills/paper-2-web/references/paper2video.md +305 -0
- package/bin/skills/paper-2-web/references/paper2web.md +187 -0
- package/bin/skills/paper-2-web/references/usage_examples.md +436 -0
- package/bin/skills/peer-review/SKILL.md +702 -0
- package/bin/skills/peer-review/references/calibration_guidelines.md +196 -0
- package/bin/skills/peer-review/references/common_issues.md +552 -0
- package/bin/skills/peer-review/references/paper_mechanics.md +269 -0
- package/bin/skills/peer-review/references/reporting_standards.md +290 -0
- package/bin/skills/peer-review/references/scoring_rubric.md +239 -0
- package/bin/skills/pptx-posters/SKILL.md +410 -0
- package/bin/skills/pptx-posters/assets/poster_html_template.html +257 -0
- package/bin/skills/pptx-posters/assets/poster_quality_checklist.md +358 -0
- package/bin/skills/pptx-posters/references/poster_content_guide.md +748 -0
- package/bin/skills/pptx-posters/references/poster_design_principles.md +806 -0
- package/bin/skills/pptx-posters/references/poster_layout_design.md +900 -0
- package/bin/skills/research-grants/README.md +285 -0
- package/bin/skills/research-grants/SKILL.md +938 -0
- package/bin/skills/research-grants/assets/budget_justification_template.md +453 -0
- package/bin/skills/research-grants/assets/nih_specific_aims_template.md +166 -0
- package/bin/skills/research-grants/assets/nsf_project_summary_template.md +92 -0
- package/bin/skills/research-grants/references/broader_impacts.md +392 -0
- package/bin/skills/research-grants/references/darpa_guidelines.md +636 -0
- package/bin/skills/research-grants/references/doe_guidelines.md +586 -0
- package/bin/skills/research-grants/references/nih_guidelines.md +851 -0
- package/bin/skills/research-grants/references/nsf_guidelines.md +570 -0
- package/bin/skills/research-grants/references/specific_aims_guide.md +458 -0
- package/bin/skills/research-lookup/README.md +156 -0
- package/bin/skills/research-lookup/SKILL.md +606 -0
- package/bin/skills/research-lookup/examples.py +174 -0
- package/bin/skills/research-lookup/lookup.py +187 -0
- package/bin/skills/research-lookup/research_lookup.py +483 -0
- package/bin/skills/research-lookup/scripts/research_lookup.py +483 -0
- package/bin/skills/scholar-evaluation/SKILL.md +289 -0
- package/bin/skills/scholar-evaluation/references/evaluation_framework.md +663 -0
- package/bin/skills/scholar-evaluation/scripts/calculate_scores.py +366 -0
- package/bin/skills/scientific-critical-thinking/SKILL.md +566 -0
- package/bin/skills/scientific-critical-thinking/references/common_biases.md +364 -0
- package/bin/skills/scientific-critical-thinking/references/evidence_hierarchy.md +484 -0
- package/bin/skills/scientific-critical-thinking/references/experimental_design.md +496 -0
- package/bin/skills/scientific-critical-thinking/references/logical_fallacies.md +478 -0
- package/bin/skills/scientific-critical-thinking/references/scientific_method.md +169 -0
- package/bin/skills/scientific-critical-thinking/references/statistical_pitfalls.md +506 -0
- package/bin/skills/scientific-schematics/QUICK_REFERENCE.md +207 -0
- package/bin/skills/scientific-schematics/README.md +327 -0
- package/bin/skills/scientific-schematics/SKILL.md +615 -0
- package/bin/skills/scientific-schematics/example_usage.sh +89 -0
- package/bin/skills/scientific-schematics/references/best_practices.md +559 -0
- package/bin/skills/scientific-schematics/scripts/generate_schematic.py +135 -0
- package/bin/skills/scientific-schematics/scripts/generate_schematic_ai.py +807 -0
- package/bin/skills/scientific-schematics/test_ai_generation.py +243 -0
- package/bin/skills/scientific-slides/SKILL.md +942 -0
- package/bin/skills/scientific-slides/assets/timing_guidelines.md +597 -0
- package/bin/skills/scientific-slides/references/data_visualization_slides.md +708 -0
- package/bin/skills/scientific-slides/references/presentation_structure.md +642 -0
- package/bin/skills/scientific-slides/references/slide_design_principles.md +849 -0
- package/bin/skills/scientific-slides/references/talk_types_guide.md +687 -0
- package/bin/skills/scientific-slides/references/visual_review_workflow.md +775 -0
- package/bin/skills/scientific-slides/scripts/generate_slide_image.py +143 -0
- package/bin/skills/scientific-slides/scripts/generate_slide_image_ai.py +748 -0
- package/bin/skills/scientific-slides/scripts/pdf_to_images.py +201 -0
- package/bin/skills/scientific-slides/scripts/slides_to_pdf.py +220 -0
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- package/bin/skills/tinker/SKILL.md +2 -3
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- package/bin/skills/treatment-plans/scripts/check_completeness.py +322 -0
- package/bin/skills/treatment-plans/scripts/generate_template.py +233 -0
- package/bin/skills/treatment-plans/scripts/timeline_generator.py +385 -0
- package/bin/skills/treatment-plans/scripts/validate_treatment_plan.py +369 -0
- package/bin/skills/unsloth/SKILL.md +565 -47
- package/bin/skills/unsloth/docs/advanced-rl.md +222 -0
- package/bin/skills/unsloth/docs/chat-templates.md +141 -0
- package/bin/skills/unsloth/docs/datasets.md +489 -0
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- package/bin/skills/unsloth/docs/memory-efficient-rl.md +267 -0
- package/bin/skills/unsloth/docs/model-selection.md +70 -0
- package/bin/skills/unsloth/docs/models.md +532 -0
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# Professional Treatment Plan Styling - Quick Reference
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## File Location
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`medical_treatment_plan.sty` - Available in the assets directory
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## Quick Start
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```latex
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% !TEX program = xelatex
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\documentclass[11pt,letterpaper]{article}
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\usepackage{medical_treatment_plan}
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\usepackage{natbib}
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\begin{document}
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\maketitle
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% Your content
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\end{document}
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```
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## Custom Box Environments
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### 1. Info Box (Blue) - General Information
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```latex
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\begin{infobox}[Title]
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Content
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\end{infobox}
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```
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**Use for:** Clinical assessments, monitoring schedules, titration protocols
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### 2. Warning Box (Yellow/Red) - Critical Alerts
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```latex
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\begin{warningbox}[Title]
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Critical information
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\end{warningbox}
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```
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**Use for:** Safety protocols, decision points, contraindications
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### 3. Goal Box (Green) - Treatment Goals
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```latex
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\begin{goalbox}[Title]
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Goals and targets
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\end{goalbox}
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```
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**Use for:** SMART goals, target outcomes, success metrics
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### 4. Key Points Box (Light Blue) - Highlights
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```latex
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\begin{keybox}[Title]
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Important highlights
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\end{keybox}
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```
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**Use for:** Executive summaries, key takeaways, essential recommendations
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### 5. Emergency Box (Red) - Emergency Info
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```latex
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\begin{emergencybox}
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Emergency contacts
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\end{emergencybox}
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```
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**Use for:** Emergency contacts, urgent protocols
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### 6. Patient Info Box (White/Blue) - Demographics
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```latex
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\begin{patientinfo}
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Patient information
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\end{patientinfo}
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```
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**Use for:** Patient demographics and baseline data
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## Professional Tables
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```latex
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\begin{medtable}{Caption}
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\begin{tabular}{|l|l|l|}
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\hline
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\tableheadercolor
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\textcolor{white}{\textbf{Header 1}} & \textcolor{white}{\textbf{Header 2}} \\
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\hline
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Data row 1 \\
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\hline
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\tablerowcolor % Alternating gray
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Data row 2 \\
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\hline
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\end{tabular}
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\caption{Table caption}
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\end{medtable}
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```
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## Color Scheme
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- **Primary Blue** (0, 102, 153): Headers, titles
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- **Secondary Blue** (102, 178, 204): Light backgrounds
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- **Accent Blue** (0, 153, 204): Links, highlights
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- **Success Green** (0, 153, 76): Goals
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- **Warning Red** (204, 0, 0): Warnings
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## Compilation
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```bash
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xelatex document.tex
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bibtex document
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xelatex document.tex
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xelatex document.tex
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```
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## Best Practices
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1. **Match box type to purpose:** Green for goals, red/yellow for warnings
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2. **Don't overuse boxes:** Reserve for important information only
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3. **Maintain color consistency:** Stick to the defined scheme
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4. **Use white space:** Add `\vspace{0.5cm}` between major sections
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5. **Table alternating rows:** Use `\tablerowcolor` for readability
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## Installation
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**Option 1:** Copy `assets/medical_treatment_plan.sty` to your document directory
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**Option 2:** Install to user TeX directory
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```bash
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mkdir -p ~/texmf/tex/latex/medical_treatment_plan
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cp assets/medical_treatment_plan.sty ~/texmf/tex/latex/medical_treatment_plan/
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texhash ~/texmf
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```
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## Required Packages
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All automatically loaded by the style:
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- tcolorbox, tikz, xcolor
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- fancyhdr, titlesec, enumitem
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- booktabs, longtable, array, colortbl
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- hyperref, natbib, fontspec
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## Example Structure
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```latex
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\maketitle
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\section*{Patient Information}
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\begin{patientinfo}
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Demographics
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\section{Executive Summary}
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\begin{keybox}[Plan Overview]
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Key highlights
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\section{Treatment Goals}
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\begin{goalbox}[SMART Goals]
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Goals list
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\section{Medication Plan}
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\begin{infobox}[Dosing]
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Instructions
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\begin{warningbox}[Safety]
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Warnings
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\section{Emergency}
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\begin{emergencybox}
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Contacts
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```
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## Troubleshooting
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**Missing packages:**
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```bash
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sudo tlmgr install tcolorbox tikz pgf
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```
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**Special characters not showing:**
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- Use XeLaTeX instead of PDFLaTeX
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- Or use LaTeX commands: `$\checkmark$`, `$\geq$`
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**Header warnings:**
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- Already set to 22pt in style file
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- Adjust if needed
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---
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For complete documentation, see the "Professional Document Styling" section in SKILL.md
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