@synsci/cli-darwin-x64-baseline 1.1.71 → 1.1.72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/skills/citation-management/SKILL.md +1109 -0
- package/bin/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/bin/skills/citation-management/assets/citation_checklist.md +386 -0
- package/bin/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/bin/skills/citation-management/references/citation_validation.md +794 -0
- package/bin/skills/citation-management/references/google_scholar_search.md +725 -0
- package/bin/skills/citation-management/references/metadata_extraction.md +870 -0
- package/bin/skills/citation-management/references/pubmed_search.md +839 -0
- package/bin/skills/citation-management/scripts/doi_to_bibtex.py +182 -0
- package/bin/skills/citation-management/scripts/extract_metadata.py +570 -0
- package/bin/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/bin/skills/citation-management/scripts/search_google_scholar.py +251 -0
- package/bin/skills/citation-management/scripts/search_pubmed.py +348 -0
- package/bin/skills/citation-management/scripts/validate_citations.py +494 -0
- package/bin/skills/clinical-decision-support/README.md +129 -0
- package/bin/skills/clinical-decision-support/SKILL.md +506 -0
- package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/bin/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
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- package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/bin/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/bin/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +383 -0
- package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +417 -0
- package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +509 -0
- package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +441 -0
- package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +326 -0
- package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
- package/bin/skills/clinical-reports/README.md +236 -0
- package/bin/skills/clinical-reports/SKILL.md +1127 -0
- package/bin/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
- package/bin/skills/clinical-reports/assets/consult_note_template.md +305 -0
- package/bin/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
- package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
- package/bin/skills/clinical-reports/assets/history_physical_template.md +305 -0
- package/bin/skills/clinical-reports/assets/lab_report_template.md +309 -0
- package/bin/skills/clinical-reports/assets/pathology_report_template.md +249 -0
- package/bin/skills/clinical-reports/assets/quality_checklist.md +338 -0
- package/bin/skills/clinical-reports/assets/radiology_report_template.md +318 -0
- package/bin/skills/clinical-reports/assets/soap_note_template.md +253 -0
- package/bin/skills/clinical-reports/references/case_report_guidelines.md +570 -0
- package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
- package/bin/skills/clinical-reports/references/data_presentation.md +530 -0
- package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
- package/bin/skills/clinical-reports/references/medical_terminology.md +588 -0
- package/bin/skills/clinical-reports/references/patient_documentation.md +744 -0
- package/bin/skills/clinical-reports/references/peer_review_standards.md +585 -0
- package/bin/skills/clinical-reports/references/regulatory_compliance.md +577 -0
- package/bin/skills/clinical-reports/scripts/check_deidentification.py +332 -0
- package/bin/skills/clinical-reports/scripts/compliance_checker.py +78 -0
- package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +97 -0
- package/bin/skills/clinical-reports/scripts/format_adverse_events.py +97 -0
- package/bin/skills/clinical-reports/scripts/generate_report_template.py +149 -0
- package/bin/skills/clinical-reports/scripts/terminology_validator.py +126 -0
- package/bin/skills/clinical-reports/scripts/validate_case_report.py +323 -0
- package/bin/skills/clinical-reports/scripts/validate_trial_report.py +88 -0
- package/bin/skills/fireworks-ai/SKILL.md +665 -0
- package/bin/skills/generate-image/SKILL.md +178 -0
- package/bin/skills/generate-image/scripts/generate_image.py +254 -0
- package/bin/skills/groq/SKILL.md +347 -0
- package/bin/skills/hypothesis-generation/SKILL.md +293 -0
- package/bin/skills/hypothesis-generation/assets/FORMATTING_GUIDE.md +672 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_generation.sty +307 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_report_template.tex +572 -0
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- package/bin/skills/latex-posters/README.md +417 -0
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- package/bin/skills/literature-review/SKILL.md +641 -0
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- package/bin/skills/literature-review/references/database_strategies.md +455 -0
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- package/bin/skills/literature-review/scripts/search_databases.py +310 -0
- package/bin/skills/literature-review/scripts/verify_citations.py +218 -0
- package/bin/skills/market-research-reports/SKILL.md +904 -0
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- package/bin/skills/market-research-reports/references/data_analysis_patterns.md +548 -0
- package/bin/skills/market-research-reports/references/report_structure_guide.md +999 -0
- package/bin/skills/market-research-reports/references/visual_generation_guide.md +1077 -0
- package/bin/skills/market-research-reports/scripts/generate_market_visuals.py +472 -0
- package/bin/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
- package/bin/skills/markitdown/LICENSE.txt +22 -0
- package/bin/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
- package/bin/skills/markitdown/QUICK_REFERENCE.md +309 -0
- package/bin/skills/markitdown/README.md +184 -0
- package/bin/skills/markitdown/SKILL.md +486 -0
- package/bin/skills/markitdown/SKILL_SUMMARY.md +307 -0
- package/bin/skills/markitdown/assets/example_usage.md +463 -0
- package/bin/skills/markitdown/references/api_reference.md +399 -0
- package/bin/skills/markitdown/references/file_formats.md +542 -0
- package/bin/skills/markitdown/scripts/batch_convert.py +195 -0
- package/bin/skills/markitdown/scripts/convert_literature.py +262 -0
- package/bin/skills/markitdown/scripts/convert_with_ai.py +224 -0
- package/bin/skills/ml-paper-writing/SKILL.md +937 -0
- package/bin/skills/ml-paper-writing/references/checklists.md +361 -0
- package/bin/skills/ml-paper-writing/references/citation-workflow.md +562 -0
- package/bin/skills/ml-paper-writing/references/reviewer-guidelines.md +367 -0
- package/bin/skills/ml-paper-writing/references/sources.md +159 -0
- package/bin/skills/ml-paper-writing/references/writing-guide.md +476 -0
- package/bin/skills/ml-paper-writing/templates/README.md +251 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/README.md +534 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-template.tex +952 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bib +111 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bst +1493 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.sty +315 -0
- package/bin/skills/ml-paper-writing/templates/acl/README.md +50 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl.sty +312 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_latex.tex +377 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_lualatex.tex +101 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_natbib.bst +1940 -0
- package/bin/skills/ml-paper-writing/templates/acl/anthology.bib.txt +26 -0
- package/bin/skills/ml-paper-writing/templates/acl/custom.bib +70 -0
- package/bin/skills/ml-paper-writing/templates/acl/formatting.md +326 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/README.md +3 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bib +11 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bst +1440 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty +218 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex +305 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/fancyhdr.sty +485 -0
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- package/bin/skills/ml-paper-writing/templates/colm2025/natbib.sty +1246 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/fancyhdr.sty +485 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bib +24 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bst +1440 -0
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- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.tex +414 -0
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- package/bin/skills/paper-2-web/SKILL.md +491 -0
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- package/bin/skills/unsloth/docs/multi-gpu-ddp.md +90 -0
- package/bin/skills/unsloth/docs/notebooks.md +223 -0
- package/bin/skills/unsloth/docs/overview.md +110 -0
- package/bin/skills/unsloth/docs/qwen3-coder-next-extended.md +900 -0
- package/bin/skills/unsloth/docs/qwen3-coder-next.md +900 -0
- package/bin/skills/unsloth/docs/requirements.md +45 -0
- package/bin/skills/unsloth/docs/reward-hacking.md +25 -0
- package/bin/skills/unsloth/docs/saving-to-gguf.md +138 -0
- package/bin/skills/unsloth/docs/saving-to-ollama.md +46 -0
- package/bin/skills/unsloth/docs/sglang-guide.md +278 -0
- package/bin/skills/unsloth/docs/speculative-decoding.md +70 -0
- package/bin/skills/unsloth/docs/tool-calling.md +334 -0
- package/bin/skills/unsloth/docs/troubleshooting-faq.md +204 -0
- package/bin/skills/unsloth/docs/troubleshooting-inference.md +26 -0
- package/bin/skills/unsloth/docs/tts-fine-tuning.md +149 -0
- package/bin/skills/unsloth/docs/tutorial-grpo.md +273 -0
- package/bin/skills/unsloth/docs/tutorial-llama3-ollama.md +356 -0
- package/bin/skills/unsloth/docs/vision-fine-tuning.md +135 -0
- package/bin/skills/unsloth/docs/vision-rl.md +170 -0
- package/bin/skills/unsloth/docs/vllm-engine-arguments.md +43 -0
- package/bin/skills/unsloth/docs/vllm-guide.md +98 -0
- package/bin/skills/venue-templates/SKILL.md +686 -0
- package/bin/skills/venue-templates/assets/examples/cell_summary_example.md +247 -0
- package/bin/skills/venue-templates/assets/examples/medical_structured_abstract.md +313 -0
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- package/bin/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
- package/bin/skills/venue-templates/assets/journals/nature_article.tex +171 -0
- package/bin/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
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- package/bin/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
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#!/usr/bin/env python3
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"""
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Slide image generation using Nano Banana Pro.
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Generate presentation slides or visuals by describing them in natural language.
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Nano Banana Pro handles everything automatically with smart iterative refinement.
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Two modes:
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- Default (full slide): Generate complete slides with title, content, visuals (for PDF workflow)
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- Visual only: Generate just images/figures to place on slides (for PPT workflow)
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Supports attaching reference images for context (Nano Banana Pro will see these).
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Usage:
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# Generate full slide for PDF workflow
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python generate_slide_image.py "Title: Introduction\\nKey points: AI, ML, Deep Learning" -o slide_01.png
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# Generate visual only for PPT workflow
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python generate_slide_image.py "Neural network diagram" -o figure.png --visual-only
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# With reference images attached
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python generate_slide_image.py "Create a slide about this data" -o slide.png --attach chart.png
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"""
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import argparse
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import os
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import subprocess
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import sys
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from pathlib import Path
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def main():
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"""Command-line interface."""
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parser = argparse.ArgumentParser(
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description="Generate presentation slides or visuals using Nano Banana Pro AI",
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formatter_class=argparse.RawDescriptionHelpFormatter,
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epilog="""
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How it works:
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Describe your slide or visual in natural language.
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Nano Banana Pro generates it automatically with:
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- Smart iteration (only regenerates if quality is below threshold)
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- Quality review by Gemini 3 Pro
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- Publication-ready output
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Modes:
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Default (full slide): Generate complete slide with title, content, visuals
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Use for PDF workflow where each slide is an image
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Visual only: Generate just the image/figure
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Use for PPT workflow where you add text separately
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Attachments:
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Use --attach to provide reference images that Nano Banana Pro will see.
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This allows you to say "create a slide about this chart" and attach the chart.
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Examples:
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# Full slide (default) - for PDF workflow
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python generate_slide_image.py "Title: Machine Learning\\nPoints: supervised, unsupervised, reinforcement" -o slide_01.png
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# Visual only - for PPT workflow
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python generate_slide_image.py "Flowchart showing data pipeline" -o figure.png --visual-only
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# With reference images attached
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python generate_slide_image.py "Create a slide explaining this chart" -o slide.png --attach chart.png
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python generate_slide_image.py "Combine these into a comparison" -o compare.png --attach before.png --attach after.png
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# Multiple slides for PDF
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python generate_slide_image.py "Title slide: AI Conference 2025" -o slides/01_title.png
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python generate_slide_image.py "Title: Introduction\\nOverview of deep learning" -o slides/02_intro.png
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Environment Variables:
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OPENROUTER_API_KEY Required for AI generation
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""",
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)
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parser.add_argument("prompt", help="Description of the slide or visual to generate")
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parser.add_argument("-o", "--output", required=True, help="Output file path")
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parser.add_argument(
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"--attach",
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action="append",
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dest="attachments",
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metavar="IMAGE",
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help="Attach image file(s) as context (can use multiple times)",
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)
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parser.add_argument("--visual-only", action="store_true", help="Generate just the visual/figure (for PPT workflow)")
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parser.add_argument("--iterations", type=int, default=2, help="Maximum refinement iterations (default: 2, max: 2)")
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parser.add_argument("--api-key", help="OpenRouter API key (or use OPENROUTER_API_KEY env var)")
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parser.add_argument("-v", "--verbose", action="store_true", help="Verbose output")
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args = parser.parse_args()
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# Check for API key
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api_key = args.api_key or os.getenv("OPENROUTER_API_KEY")
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if not api_key:
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print("Error: OPENROUTER_API_KEY environment variable not set")
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print("\nFor AI generation, you need an OpenRouter API key.")
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print("Get one at: https://openrouter.ai/keys")
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print("\nSet it with:")
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print(" export OPENROUTER_API_KEY='your_api_key'")
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print("\nOr use --api-key flag")
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sys.exit(1)
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# Find AI generation script
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script_dir = Path(__file__).parent
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ai_script = script_dir / "generate_slide_image_ai.py"
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if not ai_script.exists():
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print(f"Error: AI generation script not found: {ai_script}")
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sys.exit(1)
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# Build command
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cmd = [sys.executable, str(ai_script), args.prompt, "-o", args.output]
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# Add attachments
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if args.attachments:
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for att in args.attachments:
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cmd.extend(["--attach", att])
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if args.visual_only:
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cmd.append("--visual-only")
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# Enforce max 2 iterations
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iterations = min(args.iterations, 2)
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if iterations != 2:
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cmd.extend(["--iterations", str(iterations)])
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if api_key:
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cmd.extend(["--api-key", api_key])
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if args.verbose:
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cmd.append("-v")
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# Execute
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try:
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result = subprocess.run(cmd, check=False)
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sys.exit(result.returncode)
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except Exception as e:
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print(f"Error executing AI generation: {e}")
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sys.exit(1)
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if __name__ == "__main__":
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main()
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