@synsci/cli-darwin-x64-baseline 1.1.71 → 1.1.72
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bin/skills/citation-management/SKILL.md +1109 -0
- package/bin/skills/citation-management/assets/bibtex_template.bib +264 -0
- package/bin/skills/citation-management/assets/citation_checklist.md +386 -0
- package/bin/skills/citation-management/references/bibtex_formatting.md +908 -0
- package/bin/skills/citation-management/references/citation_validation.md +794 -0
- package/bin/skills/citation-management/references/google_scholar_search.md +725 -0
- package/bin/skills/citation-management/references/metadata_extraction.md +870 -0
- package/bin/skills/citation-management/references/pubmed_search.md +839 -0
- package/bin/skills/citation-management/scripts/doi_to_bibtex.py +182 -0
- package/bin/skills/citation-management/scripts/extract_metadata.py +570 -0
- package/bin/skills/citation-management/scripts/format_bibtex.py +349 -0
- package/bin/skills/citation-management/scripts/search_google_scholar.py +251 -0
- package/bin/skills/citation-management/scripts/search_pubmed.py +348 -0
- package/bin/skills/citation-management/scripts/validate_citations.py +494 -0
- package/bin/skills/clinical-decision-support/README.md +129 -0
- package/bin/skills/clinical-decision-support/SKILL.md +506 -0
- package/bin/skills/clinical-decision-support/assets/biomarker_report_template.tex +380 -0
- package/bin/skills/clinical-decision-support/assets/clinical_pathway_template.tex +222 -0
- package/bin/skills/clinical-decision-support/assets/cohort_analysis_template.tex +359 -0
- package/bin/skills/clinical-decision-support/assets/color_schemes.tex +149 -0
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- package/bin/skills/clinical-decision-support/assets/recommendation_strength_guide.md +328 -0
- package/bin/skills/clinical-decision-support/assets/treatment_recommendation_template.tex +529 -0
- package/bin/skills/clinical-decision-support/references/biomarker_classification.md +719 -0
- package/bin/skills/clinical-decision-support/references/clinical_decision_algorithms.md +604 -0
- package/bin/skills/clinical-decision-support/references/evidence_synthesis.md +840 -0
- package/bin/skills/clinical-decision-support/references/outcome_analysis.md +640 -0
- package/bin/skills/clinical-decision-support/references/patient_cohort_analysis.md +427 -0
- package/bin/skills/clinical-decision-support/references/treatment_recommendations.md +521 -0
- package/bin/skills/clinical-decision-support/scripts/biomarker_classifier.py +383 -0
- package/bin/skills/clinical-decision-support/scripts/build_decision_tree.py +417 -0
- package/bin/skills/clinical-decision-support/scripts/create_cohort_tables.py +509 -0
- package/bin/skills/clinical-decision-support/scripts/generate_survival_analysis.py +441 -0
- package/bin/skills/clinical-decision-support/scripts/validate_cds_document.py +326 -0
- package/bin/skills/clinical-reports/IMPLEMENTATION_SUMMARY.md +641 -0
- package/bin/skills/clinical-reports/README.md +236 -0
- package/bin/skills/clinical-reports/SKILL.md +1127 -0
- package/bin/skills/clinical-reports/assets/case_report_template.md +352 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_csr_template.md +353 -0
- package/bin/skills/clinical-reports/assets/clinical_trial_sae_template.md +359 -0
- package/bin/skills/clinical-reports/assets/consult_note_template.md +305 -0
- package/bin/skills/clinical-reports/assets/discharge_summary_template.md +453 -0
- package/bin/skills/clinical-reports/assets/hipaa_compliance_checklist.md +395 -0
- package/bin/skills/clinical-reports/assets/history_physical_template.md +305 -0
- package/bin/skills/clinical-reports/assets/lab_report_template.md +309 -0
- package/bin/skills/clinical-reports/assets/pathology_report_template.md +249 -0
- package/bin/skills/clinical-reports/assets/quality_checklist.md +338 -0
- package/bin/skills/clinical-reports/assets/radiology_report_template.md +318 -0
- package/bin/skills/clinical-reports/assets/soap_note_template.md +253 -0
- package/bin/skills/clinical-reports/references/case_report_guidelines.md +570 -0
- package/bin/skills/clinical-reports/references/clinical_trial_reporting.md +693 -0
- package/bin/skills/clinical-reports/references/data_presentation.md +530 -0
- package/bin/skills/clinical-reports/references/diagnostic_reports_standards.md +629 -0
- package/bin/skills/clinical-reports/references/medical_terminology.md +588 -0
- package/bin/skills/clinical-reports/references/patient_documentation.md +744 -0
- package/bin/skills/clinical-reports/references/peer_review_standards.md +585 -0
- package/bin/skills/clinical-reports/references/regulatory_compliance.md +577 -0
- package/bin/skills/clinical-reports/scripts/check_deidentification.py +332 -0
- package/bin/skills/clinical-reports/scripts/compliance_checker.py +78 -0
- package/bin/skills/clinical-reports/scripts/extract_clinical_data.py +97 -0
- package/bin/skills/clinical-reports/scripts/format_adverse_events.py +97 -0
- package/bin/skills/clinical-reports/scripts/generate_report_template.py +149 -0
- package/bin/skills/clinical-reports/scripts/terminology_validator.py +126 -0
- package/bin/skills/clinical-reports/scripts/validate_case_report.py +323 -0
- package/bin/skills/clinical-reports/scripts/validate_trial_report.py +88 -0
- package/bin/skills/fireworks-ai/SKILL.md +665 -0
- package/bin/skills/generate-image/SKILL.md +178 -0
- package/bin/skills/generate-image/scripts/generate_image.py +254 -0
- package/bin/skills/groq/SKILL.md +347 -0
- package/bin/skills/hypothesis-generation/SKILL.md +293 -0
- package/bin/skills/hypothesis-generation/assets/FORMATTING_GUIDE.md +672 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_generation.sty +307 -0
- package/bin/skills/hypothesis-generation/assets/hypothesis_report_template.tex +572 -0
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- package/bin/skills/latex-posters/README.md +417 -0
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- package/bin/skills/literature-review/SKILL.md +641 -0
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- package/bin/skills/literature-review/references/database_strategies.md +455 -0
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- package/bin/skills/literature-review/scripts/search_databases.py +310 -0
- package/bin/skills/literature-review/scripts/verify_citations.py +218 -0
- package/bin/skills/market-research-reports/SKILL.md +904 -0
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- package/bin/skills/market-research-reports/references/data_analysis_patterns.md +548 -0
- package/bin/skills/market-research-reports/references/report_structure_guide.md +999 -0
- package/bin/skills/market-research-reports/references/visual_generation_guide.md +1077 -0
- package/bin/skills/market-research-reports/scripts/generate_market_visuals.py +472 -0
- package/bin/skills/markitdown/INSTALLATION_GUIDE.md +318 -0
- package/bin/skills/markitdown/LICENSE.txt +22 -0
- package/bin/skills/markitdown/OPENROUTER_INTEGRATION.md +359 -0
- package/bin/skills/markitdown/QUICK_REFERENCE.md +309 -0
- package/bin/skills/markitdown/README.md +184 -0
- package/bin/skills/markitdown/SKILL.md +486 -0
- package/bin/skills/markitdown/SKILL_SUMMARY.md +307 -0
- package/bin/skills/markitdown/assets/example_usage.md +463 -0
- package/bin/skills/markitdown/references/api_reference.md +399 -0
- package/bin/skills/markitdown/references/file_formats.md +542 -0
- package/bin/skills/markitdown/scripts/batch_convert.py +195 -0
- package/bin/skills/markitdown/scripts/convert_literature.py +262 -0
- package/bin/skills/markitdown/scripts/convert_with_ai.py +224 -0
- package/bin/skills/ml-paper-writing/SKILL.md +937 -0
- package/bin/skills/ml-paper-writing/references/checklists.md +361 -0
- package/bin/skills/ml-paper-writing/references/citation-workflow.md +562 -0
- package/bin/skills/ml-paper-writing/references/reviewer-guidelines.md +367 -0
- package/bin/skills/ml-paper-writing/references/sources.md +159 -0
- package/bin/skills/ml-paper-writing/references/writing-guide.md +476 -0
- package/bin/skills/ml-paper-writing/templates/README.md +251 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/README.md +534 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-template.tex +952 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bib +111 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.bst +1493 -0
- package/bin/skills/ml-paper-writing/templates/aaai2026/aaai2026.sty +315 -0
- package/bin/skills/ml-paper-writing/templates/acl/README.md +50 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl.sty +312 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_latex.tex +377 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_lualatex.tex +101 -0
- package/bin/skills/ml-paper-writing/templates/acl/acl_natbib.bst +1940 -0
- package/bin/skills/ml-paper-writing/templates/acl/anthology.bib.txt +26 -0
- package/bin/skills/ml-paper-writing/templates/acl/custom.bib +70 -0
- package/bin/skills/ml-paper-writing/templates/acl/formatting.md +326 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/README.md +3 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bib +11 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bst +1440 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty +218 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex +305 -0
- package/bin/skills/ml-paper-writing/templates/colm2025/fancyhdr.sty +485 -0
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- package/bin/skills/ml-paper-writing/templates/colm2025/natbib.sty +1246 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/fancyhdr.sty +485 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bib +24 -0
- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bst +1440 -0
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- package/bin/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.tex +414 -0
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- package/bin/skills/paper-2-web/SKILL.md +491 -0
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- package/bin/skills/unsloth/docs/multi-gpu-ddp.md +90 -0
- package/bin/skills/unsloth/docs/notebooks.md +223 -0
- package/bin/skills/unsloth/docs/overview.md +110 -0
- package/bin/skills/unsloth/docs/qwen3-coder-next-extended.md +900 -0
- package/bin/skills/unsloth/docs/qwen3-coder-next.md +900 -0
- package/bin/skills/unsloth/docs/requirements.md +45 -0
- package/bin/skills/unsloth/docs/reward-hacking.md +25 -0
- package/bin/skills/unsloth/docs/saving-to-gguf.md +138 -0
- package/bin/skills/unsloth/docs/saving-to-ollama.md +46 -0
- package/bin/skills/unsloth/docs/sglang-guide.md +278 -0
- package/bin/skills/unsloth/docs/speculative-decoding.md +70 -0
- package/bin/skills/unsloth/docs/tool-calling.md +334 -0
- package/bin/skills/unsloth/docs/troubleshooting-faq.md +204 -0
- package/bin/skills/unsloth/docs/troubleshooting-inference.md +26 -0
- package/bin/skills/unsloth/docs/tts-fine-tuning.md +149 -0
- package/bin/skills/unsloth/docs/tutorial-grpo.md +273 -0
- package/bin/skills/unsloth/docs/tutorial-llama3-ollama.md +356 -0
- package/bin/skills/unsloth/docs/vision-fine-tuning.md +135 -0
- package/bin/skills/unsloth/docs/vision-rl.md +170 -0
- package/bin/skills/unsloth/docs/vllm-engine-arguments.md +43 -0
- package/bin/skills/unsloth/docs/vllm-guide.md +98 -0
- package/bin/skills/venue-templates/SKILL.md +686 -0
- package/bin/skills/venue-templates/assets/examples/cell_summary_example.md +247 -0
- package/bin/skills/venue-templates/assets/examples/medical_structured_abstract.md +313 -0
- package/bin/skills/venue-templates/assets/examples/nature_abstract_examples.md +213 -0
- package/bin/skills/venue-templates/assets/examples/neurips_introduction_example.md +245 -0
- package/bin/skills/venue-templates/assets/grants/nih_specific_aims.tex +235 -0
- package/bin/skills/venue-templates/assets/grants/nsf_proposal_template.tex +375 -0
- package/bin/skills/venue-templates/assets/journals/nature_article.tex +171 -0
- package/bin/skills/venue-templates/assets/journals/neurips_article.tex +283 -0
- package/bin/skills/venue-templates/assets/journals/plos_one.tex +317 -0
- package/bin/skills/venue-templates/assets/posters/beamerposter_academic.tex +311 -0
- package/bin/skills/venue-templates/references/cell_press_style.md +483 -0
- package/bin/skills/venue-templates/references/conferences_formatting.md +564 -0
- package/bin/skills/venue-templates/references/cs_conference_style.md +463 -0
- package/bin/skills/venue-templates/references/grants_requirements.md +787 -0
- package/bin/skills/venue-templates/references/journals_formatting.md +486 -0
- package/bin/skills/venue-templates/references/medical_journal_styles.md +535 -0
- package/bin/skills/venue-templates/references/ml_conference_style.md +556 -0
- package/bin/skills/venue-templates/references/nature_science_style.md +405 -0
- package/bin/skills/venue-templates/references/posters_guidelines.md +628 -0
- package/bin/skills/venue-templates/references/reviewer_expectations.md +417 -0
- package/bin/skills/venue-templates/references/venue_writing_styles.md +321 -0
- package/bin/skills/venue-templates/scripts/customize_template.py +195 -0
- package/bin/skills/venue-templates/scripts/query_template.py +266 -0
- package/bin/skills/venue-templates/scripts/validate_format.py +250 -0
- package/bin/synsc +0 -0
- package/package.json +1 -1
- package/bin/skills/unsloth/references/index.md +0 -7
- package/bin/skills/unsloth/references/llms-full.md +0 -16799
- package/bin/skills/unsloth/references/llms-txt.md +0 -12044
- package/bin/skills/unsloth/references/llms.md +0 -82
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\ALC@com{##1}\begin{ALC@main}}
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%end changed by alex smola
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}{
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\newcommand{\ENDIF}{\end{ALC@if}\ALC@it\algorithmicendif}
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\newcommand{\ENDFOR}{\end{ALC@for}\ALC@it\algorithmicendfor}
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\newcommand{\ENDWHILE}{\end{ALC@whl}\ALC@it\algorithmicendwhile}
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\newcommand{\ENDLOOP}{\end{ALC@loop}\ALC@it\algorithmicendloop}
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\newcommand{\ENDFUNCTION}{\end{ALC@func}\ALC@it\algorithmicendfunction}
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\newcommand{\ENDMAIN}{\end{ALC@main}\ALC@it\algorithmicendmain}
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}
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\renewcommand{\@toodeep}{}
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\begin{list}{\ALC@lno}{\setcounter{ALC@line}{0}\setcounter{ALC@rem}{0}%
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}
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}
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{\end{list}}
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@@ -0,0 +1,75 @@
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1
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+
@inproceedings{langley00,
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2
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+
author = {P. Langley},
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3
|
+
title = {Crafting Papers on Machine Learning},
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4
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+
year = {2000},
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|
5
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+
pages = {1207--1216},
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6
|
+
editor = {Pat Langley},
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7
|
+
booktitle = {Proceedings of the 17th International Conference
|
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8
|
+
on Machine Learning (ICML 2000)},
|
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9
|
+
address = {Stanford, CA},
|
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10
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+
publisher = {Morgan Kaufmann}
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11
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+
}
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12
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+
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13
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+
@TechReport{mitchell80,
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|
14
|
+
author = "T. M. Mitchell",
|
|
15
|
+
title = "The Need for Biases in Learning Generalizations",
|
|
16
|
+
institution = "Computer Science Department, Rutgers University",
|
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17
|
+
year = "1980",
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|
18
|
+
address = "New Brunswick, MA",
|
|
19
|
+
}
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|
20
|
+
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|
21
|
+
@phdthesis{kearns89,
|
|
22
|
+
author = {M. J. Kearns},
|
|
23
|
+
title = {Computational Complexity of Machine Learning},
|
|
24
|
+
school = {Department of Computer Science, Harvard University},
|
|
25
|
+
year = {1989}
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
@Book{MachineLearningI,
|
|
29
|
+
editor = "R. S. Michalski and J. G. Carbonell and T.
|
|
30
|
+
M. Mitchell",
|
|
31
|
+
title = "Machine Learning: An Artificial Intelligence
|
|
32
|
+
Approach, Vol. I",
|
|
33
|
+
publisher = "Tioga",
|
|
34
|
+
year = "1983",
|
|
35
|
+
address = "Palo Alto, CA"
|
|
36
|
+
}
|
|
37
|
+
|
|
38
|
+
@Book{DudaHart2nd,
|
|
39
|
+
author = "R. O. Duda and P. E. Hart and D. G. Stork",
|
|
40
|
+
title = "Pattern Classification",
|
|
41
|
+
publisher = "John Wiley and Sons",
|
|
42
|
+
edition = "2nd",
|
|
43
|
+
year = "2000"
|
|
44
|
+
}
|
|
45
|
+
|
|
46
|
+
@misc{anonymous,
|
|
47
|
+
title= {Suppressed for Anonymity},
|
|
48
|
+
author= {Author, N. N.},
|
|
49
|
+
year= {2021}
|
|
50
|
+
}
|
|
51
|
+
|
|
52
|
+
@InCollection{Newell81,
|
|
53
|
+
author = "A. Newell and P. S. Rosenbloom",
|
|
54
|
+
title = "Mechanisms of Skill Acquisition and the Law of
|
|
55
|
+
Practice",
|
|
56
|
+
booktitle = "Cognitive Skills and Their Acquisition",
|
|
57
|
+
pages = "1--51",
|
|
58
|
+
publisher = "Lawrence Erlbaum Associates, Inc.",
|
|
59
|
+
year = "1981",
|
|
60
|
+
editor = "J. R. Anderson",
|
|
61
|
+
chapter = "1",
|
|
62
|
+
address = "Hillsdale, NJ"
|
|
63
|
+
}
|
|
64
|
+
|
|
65
|
+
|
|
66
|
+
@Article{Samuel59,
|
|
67
|
+
author = "A. L. Samuel",
|
|
68
|
+
title = "Some Studies in Machine Learning Using the Game of
|
|
69
|
+
Checkers",
|
|
70
|
+
journal = "IBM Journal of Research and Development",
|
|
71
|
+
year = "1959",
|
|
72
|
+
volume = "3",
|
|
73
|
+
number = "3",
|
|
74
|
+
pages = "211--229"
|
|
75
|
+
}
|
|
Binary file
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