@sjcrh/proteinpaint-types 2.86.0 → 2.87.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (233) hide show
  1. package/README.md +22 -0
  2. package/dist/brainImaging.js +11 -0
  3. package/dist/brainImagingSamples.js +11 -0
  4. package/dist/burden.js +11 -0
  5. package/dist/chunk-37ZPCVP5.js +111 -0
  6. package/dist/chunk-5GG2FNAY.js +62 -0
  7. package/dist/chunk-5JWTIWVB.js +222 -0
  8. package/dist/chunk-5RZYB4M4.js +171 -0
  9. package/dist/chunk-6EFB6ZMB.js +62 -0
  10. package/dist/chunk-6LFMFM2C.js +122 -0
  11. package/dist/chunk-7PMGKVWQ.js +62 -0
  12. package/dist/chunk-7Z3IHB43.js +152 -0
  13. package/dist/chunk-B3D26X6X.js +337 -0
  14. package/dist/chunk-BY2JABTF.js +256 -0
  15. package/dist/chunk-CETMA2FU.js +144 -0
  16. package/dist/chunk-DCN75URO.js +1740 -0
  17. package/dist/chunk-DIDZMC3G.js +96 -0
  18. package/dist/chunk-DKSPASWZ.js +4058 -0
  19. package/dist/chunk-EWRK4PKZ.js +62 -0
  20. package/dist/chunk-FDTUTGQG.js +288 -0
  21. package/dist/chunk-FZ6QOTGM.js +205 -0
  22. package/dist/chunk-GU7LIGHN.js +174 -0
  23. package/dist/chunk-IL33L6MY.js +126 -0
  24. package/dist/chunk-INDBFC54.js +1538 -0
  25. package/dist/chunk-IT7IGDC4.js +1697 -0
  26. package/dist/chunk-IWG5IPXG.js +3409 -0
  27. package/dist/chunk-JEQ3TBVQ.js +1472 -0
  28. package/dist/chunk-JPW6LFDQ.js +1507 -0
  29. package/dist/chunk-K2KQTFQI.js +113 -0
  30. package/dist/chunk-M33KP65Z.js +3347 -0
  31. package/dist/chunk-MUJUKENL.js +62 -0
  32. package/dist/chunk-N45Z3JCY.js +62 -0
  33. package/dist/chunk-OMHEDUNA.js +62 -0
  34. package/dist/chunk-OY3EKV7F.js +130 -0
  35. package/dist/chunk-Q56YNQFK.js +3417 -0
  36. package/dist/chunk-QDIIM52V.js +165 -0
  37. package/dist/chunk-QX7QLUKY.js +228 -0
  38. package/dist/chunk-RLFGMVJZ.js +234 -0
  39. package/dist/chunk-SDOWCOGK.js +96 -0
  40. package/dist/chunk-UCG25D2C.js +109 -0
  41. package/dist/chunk-UIU3IQH4.js +62 -0
  42. package/dist/chunk-W3F2RMPU.js +3494 -0
  43. package/dist/chunk-W3QYIXXF.js +273 -0
  44. package/dist/chunk-XGAOGA3F.js +159 -0
  45. package/dist/chunk-XJCQEOPB.js +61 -0
  46. package/dist/chunk-XLBSZOMF.js +117 -0
  47. package/dist/chunk-XQQ5G6N6.js +109 -0
  48. package/dist/chunk-Z6B6IQIY.js +1785 -0
  49. package/dist/dataset.js +11 -0
  50. package/dist/dsdata.js +11 -0
  51. package/dist/dzimages.js +11 -0
  52. package/dist/gdc.maf.js +11 -0
  53. package/dist/gdc.mafBuild.js +11 -0
  54. package/dist/gdc.topMutatedGenes.js +11 -0
  55. package/dist/genelookup.js +11 -0
  56. package/dist/genesetEnrichment.js +11 -0
  57. package/dist/genesetOverrepresentation.js +11 -0
  58. package/dist/healthcheck.js +11 -0
  59. package/dist/hicdata.js +11 -0
  60. package/dist/hicgenome.js +11 -0
  61. package/dist/hicstat.js +11 -0
  62. package/dist/index.js +347 -0
  63. package/dist/isoformlst.js +11 -0
  64. package/dist/ntseq.js +11 -0
  65. package/dist/pdomain.js +11 -0
  66. package/dist/samplewsimages.js +11 -0
  67. package/dist/snp.js +11 -0
  68. package/dist/termdb.DE.js +11 -0
  69. package/dist/termdb.boxplot.js +11 -0
  70. package/dist/termdb.categories.js +11 -0
  71. package/dist/termdb.cluster.js +11 -0
  72. package/dist/termdb.cohort.summary.js +11 -0
  73. package/dist/termdb.cohorts.js +11 -0
  74. package/dist/termdb.descrstats.js +11 -0
  75. package/dist/termdb.numericcategories.js +11 -0
  76. package/dist/termdb.percentile.js +11 -0
  77. package/dist/termdb.rootterm.js +11 -0
  78. package/dist/termdb.sampleImages.js +11 -0
  79. package/dist/termdb.singleSampleMutation.js +11 -0
  80. package/dist/termdb.singlecellDEgenes.js +11 -0
  81. package/dist/termdb.singlecellData.js +11 -0
  82. package/dist/termdb.singlecellSamples.js +11 -0
  83. package/dist/termdb.termchildren.js +11 -0
  84. package/dist/termdb.termsbyids.js +11 -0
  85. package/dist/termdb.topTermsByType.js +11 -0
  86. package/dist/termdb.topVariablyExpressedGenes.js +11 -0
  87. package/dist/termdb.violin.js +11 -0
  88. package/dist/tileserver.js +11 -0
  89. package/dist/wsimages.js +11 -0
  90. package/package.json +17 -15
  91. package/src/Mclass.ts +8 -0
  92. package/src/dataset.ts +1588 -0
  93. package/src/docs.json +16417 -0
  94. package/src/fileOrUrl.ts +15 -0
  95. package/src/filter.ts +125 -0
  96. package/src/genome.ts +123 -0
  97. package/src/index.ts +67 -0
  98. package/src/routes/brainImaging.ts +47 -0
  99. package/src/routes/brainImagingSamples.ts +25 -0
  100. package/src/routes/burden.ts +111 -0
  101. package/src/routes/dataset.ts +14 -0
  102. package/src/routes/dsdata.ts +14 -0
  103. package/src/routes/dzimages.ts +25 -0
  104. package/src/routes/errorResponse.ts +6 -0
  105. package/src/routes/filter.gdc.ts +15 -0
  106. package/src/routes/gdc.maf.ts +52 -0
  107. package/src/routes/gdc.mafBuild.ts +20 -0
  108. package/src/routes/gdc.topMutatedGenes.ts +37 -0
  109. package/src/routes/genelookup.ts +22 -0
  110. package/src/routes/genesetEnrichment.ts +60 -0
  111. package/src/routes/genesetOverrepresentation.ts +48 -0
  112. package/src/routes/healthcheck.ts +79 -0
  113. package/src/routes/hicdata.ts +48 -0
  114. package/src/routes/hicgenome.ts +50 -0
  115. package/src/routes/hicstat.ts +57 -0
  116. package/src/routes/isoformlst.ts +14 -0
  117. package/src/routes/ntseq.ts +14 -0
  118. package/src/routes/pdomain.ts +14 -0
  119. package/src/routes/routeApi.ts +41 -0
  120. package/src/routes/samplewsimages.ts +27 -0
  121. package/src/routes/snp.ts +13 -0
  122. package/src/routes/termdb.DE.ts +57 -0
  123. package/src/routes/termdb.boxplot.ts +78 -0
  124. package/src/routes/termdb.categories.ts +73 -0
  125. package/src/routes/termdb.cluster.ts +103 -0
  126. package/src/routes/termdb.cohort.summary.ts +14 -0
  127. package/src/routes/termdb.cohorts.ts +14 -0
  128. package/src/routes/termdb.descrstats.ts +78 -0
  129. package/src/routes/termdb.numericcategories.ts +32 -0
  130. package/src/routes/termdb.percentile.ts +65 -0
  131. package/src/routes/termdb.rootterm.ts +49 -0
  132. package/src/routes/termdb.sampleImages.ts +26 -0
  133. package/src/routes/termdb.singleSampleMutation.ts +29 -0
  134. package/src/routes/termdb.singlecellDEgenes.ts +41 -0
  135. package/src/routes/termdb.singlecellData.ts +69 -0
  136. package/src/routes/termdb.singlecellSamples.ts +46 -0
  137. package/src/routes/termdb.termchildren.ts +49 -0
  138. package/src/routes/termdb.termsbyids.ts +26 -0
  139. package/src/routes/termdb.topTermsByType.ts +32 -0
  140. package/src/routes/termdb.topVariablyExpressedGenes.ts +56 -0
  141. package/src/routes/termdb.violin.ts +122 -0
  142. package/src/routes/tileserver.ts +14 -0
  143. package/src/routes/wsimages.ts +24 -0
  144. package/src/terms/categorical.ts +106 -0
  145. package/src/terms/condition.ts +55 -0
  146. package/src/terms/geneExpression.ts +32 -0
  147. package/src/terms/geneVariant.ts +51 -0
  148. package/src/terms/metaboliteIntensity.ts +31 -0
  149. package/src/terms/numeric.ts +253 -0
  150. package/src/terms/q.ts +38 -0
  151. package/src/terms/samplelst.ts +41 -0
  152. package/src/terms/singleCellCellType.ts +22 -0
  153. package/src/terms/singleCellGeneExpression.ts +28 -0
  154. package/src/terms/snp.ts +28 -0
  155. package/src/terms/snps.ts +110 -0
  156. package/src/terms/term.ts +184 -0
  157. package/src/terms/tw.ts +38 -0
  158. package/src/terms/updated-types.ts +9 -0
  159. package/src/termsetting.ts +197 -0
  160. package/src/test/numeric.type.spec.ts +275 -0
  161. package/src/vocab.ts +37 -0
  162. package/dist/routes.ts +0 -28911
  163. package/src/Mclass.js +0 -0
  164. package/src/checkers/routes.js +0 -167
  165. package/src/dataset.js +0 -0
  166. package/src/fileOrUrl.js +0 -0
  167. package/src/filter.js +0 -0
  168. package/src/genome.js +0 -0
  169. package/src/index.js +0 -66
  170. package/src/routes/brainImaging.js +0 -11
  171. package/src/routes/brainImagingSamples.js +0 -11
  172. package/src/routes/burden.js +0 -44
  173. package/src/routes/dataset.js +0 -12
  174. package/src/routes/dsdata.js +0 -12
  175. package/src/routes/dzimages.js +0 -12
  176. package/src/routes/errorResponse.js +0 -0
  177. package/src/routes/filter.gdc.js +0 -0
  178. package/src/routes/gdc.maf.js +0 -17
  179. package/src/routes/gdc.mafBuild.js +0 -12
  180. package/src/routes/gdc.topMutatedGenes.js +0 -12
  181. package/src/routes/genelookup.js +0 -12
  182. package/src/routes/genesetEnrichment.js +0 -12
  183. package/src/routes/genesetOverrepresentation.js +0 -12
  184. package/src/routes/healthcheck.js +0 -23
  185. package/src/routes/hicdata.js +0 -12
  186. package/src/routes/hicgenome.js +0 -29
  187. package/src/routes/hicstat.js +0 -12
  188. package/src/routes/isoformlst.js +0 -12
  189. package/src/routes/ntseq.js +0 -12
  190. package/src/routes/pdomain.js +0 -12
  191. package/src/routes/routeApi.js +0 -0
  192. package/src/routes/samplewsimages.js +0 -12
  193. package/src/routes/snp.js +0 -11
  194. package/src/routes/termdb.DE.js +0 -13
  195. package/src/routes/termdb.boxplot.js +0 -12
  196. package/src/routes/termdb.categories.js +0 -48
  197. package/src/routes/termdb.cluster.js +0 -12
  198. package/src/routes/termdb.cohort.summary.js +0 -12
  199. package/src/routes/termdb.cohorts.js +0 -12
  200. package/src/routes/termdb.descrstats.js +0 -48
  201. package/src/routes/termdb.numericcategories.js +0 -12
  202. package/src/routes/termdb.percentile.js +0 -49
  203. package/src/routes/termdb.rootterm.js +0 -27
  204. package/src/routes/termdb.sampleImages.js +0 -12
  205. package/src/routes/termdb.singleSampleMutation.js +0 -12
  206. package/src/routes/termdb.singlecellDEgenes.js +0 -12
  207. package/src/routes/termdb.singlecellData.js +0 -12
  208. package/src/routes/termdb.singlecellSamples.js +0 -12
  209. package/src/routes/termdb.termchildren.js +0 -28
  210. package/src/routes/termdb.termsbyids.js +0 -12
  211. package/src/routes/termdb.topTermsByType.js +0 -12
  212. package/src/routes/termdb.topVariablyExpressedGenes.js +0 -12
  213. package/src/routes/termdb.violin.js +0 -49
  214. package/src/routes/tileserver.js +0 -12
  215. package/src/routes/wsimages.js +0 -12
  216. package/src/terms/categorical.js +0 -0
  217. package/src/terms/condition.js +0 -0
  218. package/src/terms/geneExpression.js +0 -0
  219. package/src/terms/geneVariant.js +0 -0
  220. package/src/terms/metaboliteIntensity.js +0 -0
  221. package/src/terms/numeric.js +0 -0
  222. package/src/terms/q.js +0 -0
  223. package/src/terms/samplelst.js +0 -0
  224. package/src/terms/singleCellCellType.js +0 -0
  225. package/src/terms/singleCellGeneExpression.js +0 -0
  226. package/src/terms/snp.js +0 -0
  227. package/src/terms/snps.js +0 -0
  228. package/src/terms/term.js +0 -0
  229. package/src/terms/tw.js +0 -0
  230. package/src/terms/updated-types.js +0 -0
  231. package/src/termsetting.js +0 -0
  232. package/src/test/numeric.type.spec.js +0 -117
  233. package/src/vocab.js +0 -0
@@ -0,0 +1,11 @@
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+ import {
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+ rootTermPayload,
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+ validRootTermRequest,
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+ validRootTermResponse
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+ } from "./chunk-GU7LIGHN.js";
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+ import "./chunk-Z6B6IQIY.js";
7
+ export {
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+ rootTermPayload,
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+ validRootTermRequest,
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+ validRootTermResponse
11
+ };
@@ -0,0 +1,11 @@
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+ import {
2
+ termdbSampleImagesPayload,
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+ validTermdbSampleImagesRequest,
4
+ validTermdbSampleImagesResponse
5
+ } from "./chunk-37ZPCVP5.js";
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+ import "./chunk-Z6B6IQIY.js";
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+ export {
8
+ termdbSampleImagesPayload,
9
+ validTermdbSampleImagesRequest,
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+ validTermdbSampleImagesResponse
11
+ };
@@ -0,0 +1,11 @@
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+ import {
2
+ termdbSingleSampleMutationPayload,
3
+ validTermdbSingleSampleMutationRequest,
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+ validTermdbSingleSampleMutationResponse
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+ } from "./chunk-QDIIM52V.js";
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+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbSingleSampleMutationPayload,
9
+ validTermdbSingleSampleMutationRequest,
10
+ validTermdbSingleSampleMutationResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbSingleCellDEgenesPayload,
3
+ validTermdbSingleCellDEgenesRequest,
4
+ validTermdbSingleCellDEgenesResponse
5
+ } from "./chunk-XGAOGA3F.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbSingleCellDEgenesPayload,
9
+ validTermdbSingleCellDEgenesRequest,
10
+ validTermdbSingleCellDEgenesResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbSingleCellDataPayload,
3
+ validTermdbSingleCellDataRequest,
4
+ validTermdbSingleCellDataResponse
5
+ } from "./chunk-FDTUTGQG.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbSingleCellDataPayload,
9
+ validTermdbSingleCellDataRequest,
10
+ validTermdbSingleCellDataResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbSingleCellSamplesPayload,
3
+ validTermdbSingleCellSamplesRequest,
4
+ validTermdbSingleCellSamplesResponse
5
+ } from "./chunk-FZ6QOTGM.js";
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+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbSingleCellSamplesPayload,
9
+ validTermdbSingleCellSamplesRequest,
10
+ validTermdbSingleCellSamplesResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termChildrenPayload,
3
+ validTermChildrenRequest,
4
+ validTermChildrenResponse
5
+ } from "./chunk-5RZYB4M4.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termChildrenPayload,
9
+ validTermChildrenRequest,
10
+ validTermChildrenResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termsByIdsPayload,
3
+ validTermsByIdsRequest,
4
+ validTermsByIdsResponse
5
+ } from "./chunk-M33KP65Z.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termsByIdsPayload,
9
+ validTermsByIdsRequest,
10
+ validTermsByIdsResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbTopTermsByTypePayload,
3
+ validTermdbTopTermsByTypeRequest,
4
+ validTermdbTopTermsByTypeResponse
5
+ } from "./chunk-W3F2RMPU.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbTopTermsByTypePayload,
9
+ validTermdbTopTermsByTypeRequest,
10
+ validTermdbTopTermsByTypeResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ termdbTopVariablyExpressedGenesPayload,
3
+ validTermdbTopVariablyExpressedGenesRequest,
4
+ validTermdbTopVariablyExpressedGenesResponse
5
+ } from "./chunk-INDBFC54.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ termdbTopVariablyExpressedGenesPayload,
9
+ validTermdbTopVariablyExpressedGenesRequest,
10
+ validTermdbTopVariablyExpressedGenesResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ validViolinRequest,
3
+ validViolinResponse,
4
+ violinPayload
5
+ } from "./chunk-IT7IGDC4.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ validViolinRequest,
9
+ validViolinResponse,
10
+ violinPayload
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ tilePayload,
3
+ validTileRequest,
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+ validTileResponse
5
+ } from "./chunk-6EFB6ZMB.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ tilePayload,
9
+ validTileRequest,
10
+ validTileResponse
11
+ };
@@ -0,0 +1,11 @@
1
+ import {
2
+ validWSImagesRequest,
3
+ validWSImagesResponse,
4
+ wsImagesPayload
5
+ } from "./chunk-XLBSZOMF.js";
6
+ import "./chunk-Z6B6IQIY.js";
7
+ export {
8
+ validWSImagesRequest,
9
+ validWSImagesResponse,
10
+ wsImagesPayload
11
+ };
package/package.json CHANGED
@@ -1,39 +1,41 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.86.0",
3
+ "version": "2.87.1",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
- "main": "src/index.js",
7
- "module": "src/index.js",
8
- "expo.js": {
9
- ".": "./src/index.js",
10
- "./updated": "./src/terms/updated-types.js",
11
- "./*": "./src/*",
6
+ "main": "src/index.ts",
7
+ "module": "src/index.ts",
8
+ "exports": {
9
+ ".": "./src/index.ts",
10
+ "./updated": "./src/terms/updated-types.ts",
12
11
  "./routes/*": "./src/routes/*",
13
- "./checkers/*": "./dist/checkers/*"
12
+ "./checkers": "./dist/index.js"
14
13
  },
15
- "impo.js": {
14
+ "imports": {
16
15
  "#shared": "@sjcrh/proteinpaint-shared"
17
16
  },
18
- "scri.js": {
17
+ "scripts": {
18
+ "generate": "node dev.mjs",
19
+ "predev": "tsx emitCheckers.ts",
20
+ "dev": "node --watch-path=src --watch-path=checkers dev.mjs",
19
21
  "prepare": "ts-patch install",
20
- "test": "tsc",
21
22
  "build": "./build.sh",
22
- "prepack": "./build.sh && mv src src-raw && mv srcjs src && mv package.json package.json-0 && mv src/package.json .",
23
- "postpack": "rm -rf src && mv src-raw src && mv package.json-0 package.json",
23
+ "prepack": "./build.sh",
24
+ "postpack": "rm dist/*.js && mv dist/index.ts dist/index.js",
25
+ "test": "tsc",
24
26
  "doc": "./doc.sh"
25
27
  },
26
28
  "devDependencies": {
27
29
  "ts-node": "^10.9.2",
28
30
  "ts-patch": "^3.2.1",
29
31
  "typedoc": "^0.26.11",
30
- "typedoc-plugin-missing-expo.js": "^3.0.0",
32
+ "typedoc-plugin-missing-exports": "^3.0.0",
31
33
  "typedoc-plugin-replace-text": "^4.0.0",
32
34
  "typescript": "^5.6.3",
33
35
  "typia": "^4.1.14"
34
36
  },
35
37
  "files": [
36
- "dist",
38
+ "dist/*.js",
37
39
  "src"
38
40
  ]
39
41
  }
package/src/Mclass.ts ADDED
@@ -0,0 +1,8 @@
1
+ export type Mclass = {
2
+ [mclskey: string]: {
3
+ label?: string
4
+ color?: string
5
+ dt?: number | string
6
+ desc?: string
7
+ }
8
+ }