@sjcrh/proteinpaint-types 2.86.0 → 2.87.1

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Files changed (233) hide show
  1. package/README.md +22 -0
  2. package/dist/brainImaging.js +11 -0
  3. package/dist/brainImagingSamples.js +11 -0
  4. package/dist/burden.js +11 -0
  5. package/dist/chunk-37ZPCVP5.js +111 -0
  6. package/dist/chunk-5GG2FNAY.js +62 -0
  7. package/dist/chunk-5JWTIWVB.js +222 -0
  8. package/dist/chunk-5RZYB4M4.js +171 -0
  9. package/dist/chunk-6EFB6ZMB.js +62 -0
  10. package/dist/chunk-6LFMFM2C.js +122 -0
  11. package/dist/chunk-7PMGKVWQ.js +62 -0
  12. package/dist/chunk-7Z3IHB43.js +152 -0
  13. package/dist/chunk-B3D26X6X.js +337 -0
  14. package/dist/chunk-BY2JABTF.js +256 -0
  15. package/dist/chunk-CETMA2FU.js +144 -0
  16. package/dist/chunk-DCN75URO.js +1740 -0
  17. package/dist/chunk-DIDZMC3G.js +96 -0
  18. package/dist/chunk-DKSPASWZ.js +4058 -0
  19. package/dist/chunk-EWRK4PKZ.js +62 -0
  20. package/dist/chunk-FDTUTGQG.js +288 -0
  21. package/dist/chunk-FZ6QOTGM.js +205 -0
  22. package/dist/chunk-GU7LIGHN.js +174 -0
  23. package/dist/chunk-IL33L6MY.js +126 -0
  24. package/dist/chunk-INDBFC54.js +1538 -0
  25. package/dist/chunk-IT7IGDC4.js +1697 -0
  26. package/dist/chunk-IWG5IPXG.js +3409 -0
  27. package/dist/chunk-JEQ3TBVQ.js +1472 -0
  28. package/dist/chunk-JPW6LFDQ.js +1507 -0
  29. package/dist/chunk-K2KQTFQI.js +113 -0
  30. package/dist/chunk-M33KP65Z.js +3347 -0
  31. package/dist/chunk-MUJUKENL.js +62 -0
  32. package/dist/chunk-N45Z3JCY.js +62 -0
  33. package/dist/chunk-OMHEDUNA.js +62 -0
  34. package/dist/chunk-OY3EKV7F.js +130 -0
  35. package/dist/chunk-Q56YNQFK.js +3417 -0
  36. package/dist/chunk-QDIIM52V.js +165 -0
  37. package/dist/chunk-QX7QLUKY.js +228 -0
  38. package/dist/chunk-RLFGMVJZ.js +234 -0
  39. package/dist/chunk-SDOWCOGK.js +96 -0
  40. package/dist/chunk-UCG25D2C.js +109 -0
  41. package/dist/chunk-UIU3IQH4.js +62 -0
  42. package/dist/chunk-W3F2RMPU.js +3494 -0
  43. package/dist/chunk-W3QYIXXF.js +273 -0
  44. package/dist/chunk-XGAOGA3F.js +159 -0
  45. package/dist/chunk-XJCQEOPB.js +61 -0
  46. package/dist/chunk-XLBSZOMF.js +117 -0
  47. package/dist/chunk-XQQ5G6N6.js +109 -0
  48. package/dist/chunk-Z6B6IQIY.js +1785 -0
  49. package/dist/dataset.js +11 -0
  50. package/dist/dsdata.js +11 -0
  51. package/dist/dzimages.js +11 -0
  52. package/dist/gdc.maf.js +11 -0
  53. package/dist/gdc.mafBuild.js +11 -0
  54. package/dist/gdc.topMutatedGenes.js +11 -0
  55. package/dist/genelookup.js +11 -0
  56. package/dist/genesetEnrichment.js +11 -0
  57. package/dist/genesetOverrepresentation.js +11 -0
  58. package/dist/healthcheck.js +11 -0
  59. package/dist/hicdata.js +11 -0
  60. package/dist/hicgenome.js +11 -0
  61. package/dist/hicstat.js +11 -0
  62. package/dist/index.js +347 -0
  63. package/dist/isoformlst.js +11 -0
  64. package/dist/ntseq.js +11 -0
  65. package/dist/pdomain.js +11 -0
  66. package/dist/samplewsimages.js +11 -0
  67. package/dist/snp.js +11 -0
  68. package/dist/termdb.DE.js +11 -0
  69. package/dist/termdb.boxplot.js +11 -0
  70. package/dist/termdb.categories.js +11 -0
  71. package/dist/termdb.cluster.js +11 -0
  72. package/dist/termdb.cohort.summary.js +11 -0
  73. package/dist/termdb.cohorts.js +11 -0
  74. package/dist/termdb.descrstats.js +11 -0
  75. package/dist/termdb.numericcategories.js +11 -0
  76. package/dist/termdb.percentile.js +11 -0
  77. package/dist/termdb.rootterm.js +11 -0
  78. package/dist/termdb.sampleImages.js +11 -0
  79. package/dist/termdb.singleSampleMutation.js +11 -0
  80. package/dist/termdb.singlecellDEgenes.js +11 -0
  81. package/dist/termdb.singlecellData.js +11 -0
  82. package/dist/termdb.singlecellSamples.js +11 -0
  83. package/dist/termdb.termchildren.js +11 -0
  84. package/dist/termdb.termsbyids.js +11 -0
  85. package/dist/termdb.topTermsByType.js +11 -0
  86. package/dist/termdb.topVariablyExpressedGenes.js +11 -0
  87. package/dist/termdb.violin.js +11 -0
  88. package/dist/tileserver.js +11 -0
  89. package/dist/wsimages.js +11 -0
  90. package/package.json +17 -15
  91. package/src/Mclass.ts +8 -0
  92. package/src/dataset.ts +1588 -0
  93. package/src/docs.json +16417 -0
  94. package/src/fileOrUrl.ts +15 -0
  95. package/src/filter.ts +125 -0
  96. package/src/genome.ts +123 -0
  97. package/src/index.ts +67 -0
  98. package/src/routes/brainImaging.ts +47 -0
  99. package/src/routes/brainImagingSamples.ts +25 -0
  100. package/src/routes/burden.ts +111 -0
  101. package/src/routes/dataset.ts +14 -0
  102. package/src/routes/dsdata.ts +14 -0
  103. package/src/routes/dzimages.ts +25 -0
  104. package/src/routes/errorResponse.ts +6 -0
  105. package/src/routes/filter.gdc.ts +15 -0
  106. package/src/routes/gdc.maf.ts +52 -0
  107. package/src/routes/gdc.mafBuild.ts +20 -0
  108. package/src/routes/gdc.topMutatedGenes.ts +37 -0
  109. package/src/routes/genelookup.ts +22 -0
  110. package/src/routes/genesetEnrichment.ts +60 -0
  111. package/src/routes/genesetOverrepresentation.ts +48 -0
  112. package/src/routes/healthcheck.ts +79 -0
  113. package/src/routes/hicdata.ts +48 -0
  114. package/src/routes/hicgenome.ts +50 -0
  115. package/src/routes/hicstat.ts +57 -0
  116. package/src/routes/isoformlst.ts +14 -0
  117. package/src/routes/ntseq.ts +14 -0
  118. package/src/routes/pdomain.ts +14 -0
  119. package/src/routes/routeApi.ts +41 -0
  120. package/src/routes/samplewsimages.ts +27 -0
  121. package/src/routes/snp.ts +13 -0
  122. package/src/routes/termdb.DE.ts +57 -0
  123. package/src/routes/termdb.boxplot.ts +78 -0
  124. package/src/routes/termdb.categories.ts +73 -0
  125. package/src/routes/termdb.cluster.ts +103 -0
  126. package/src/routes/termdb.cohort.summary.ts +14 -0
  127. package/src/routes/termdb.cohorts.ts +14 -0
  128. package/src/routes/termdb.descrstats.ts +78 -0
  129. package/src/routes/termdb.numericcategories.ts +32 -0
  130. package/src/routes/termdb.percentile.ts +65 -0
  131. package/src/routes/termdb.rootterm.ts +49 -0
  132. package/src/routes/termdb.sampleImages.ts +26 -0
  133. package/src/routes/termdb.singleSampleMutation.ts +29 -0
  134. package/src/routes/termdb.singlecellDEgenes.ts +41 -0
  135. package/src/routes/termdb.singlecellData.ts +69 -0
  136. package/src/routes/termdb.singlecellSamples.ts +46 -0
  137. package/src/routes/termdb.termchildren.ts +49 -0
  138. package/src/routes/termdb.termsbyids.ts +26 -0
  139. package/src/routes/termdb.topTermsByType.ts +32 -0
  140. package/src/routes/termdb.topVariablyExpressedGenes.ts +56 -0
  141. package/src/routes/termdb.violin.ts +122 -0
  142. package/src/routes/tileserver.ts +14 -0
  143. package/src/routes/wsimages.ts +24 -0
  144. package/src/terms/categorical.ts +106 -0
  145. package/src/terms/condition.ts +55 -0
  146. package/src/terms/geneExpression.ts +32 -0
  147. package/src/terms/geneVariant.ts +51 -0
  148. package/src/terms/metaboliteIntensity.ts +31 -0
  149. package/src/terms/numeric.ts +253 -0
  150. package/src/terms/q.ts +38 -0
  151. package/src/terms/samplelst.ts +41 -0
  152. package/src/terms/singleCellCellType.ts +22 -0
  153. package/src/terms/singleCellGeneExpression.ts +28 -0
  154. package/src/terms/snp.ts +28 -0
  155. package/src/terms/snps.ts +110 -0
  156. package/src/terms/term.ts +184 -0
  157. package/src/terms/tw.ts +38 -0
  158. package/src/terms/updated-types.ts +9 -0
  159. package/src/termsetting.ts +197 -0
  160. package/src/test/numeric.type.spec.ts +275 -0
  161. package/src/vocab.ts +37 -0
  162. package/dist/routes.ts +0 -28911
  163. package/src/Mclass.js +0 -0
  164. package/src/checkers/routes.js +0 -167
  165. package/src/dataset.js +0 -0
  166. package/src/fileOrUrl.js +0 -0
  167. package/src/filter.js +0 -0
  168. package/src/genome.js +0 -0
  169. package/src/index.js +0 -66
  170. package/src/routes/brainImaging.js +0 -11
  171. package/src/routes/brainImagingSamples.js +0 -11
  172. package/src/routes/burden.js +0 -44
  173. package/src/routes/dataset.js +0 -12
  174. package/src/routes/dsdata.js +0 -12
  175. package/src/routes/dzimages.js +0 -12
  176. package/src/routes/errorResponse.js +0 -0
  177. package/src/routes/filter.gdc.js +0 -0
  178. package/src/routes/gdc.maf.js +0 -17
  179. package/src/routes/gdc.mafBuild.js +0 -12
  180. package/src/routes/gdc.topMutatedGenes.js +0 -12
  181. package/src/routes/genelookup.js +0 -12
  182. package/src/routes/genesetEnrichment.js +0 -12
  183. package/src/routes/genesetOverrepresentation.js +0 -12
  184. package/src/routes/healthcheck.js +0 -23
  185. package/src/routes/hicdata.js +0 -12
  186. package/src/routes/hicgenome.js +0 -29
  187. package/src/routes/hicstat.js +0 -12
  188. package/src/routes/isoformlst.js +0 -12
  189. package/src/routes/ntseq.js +0 -12
  190. package/src/routes/pdomain.js +0 -12
  191. package/src/routes/routeApi.js +0 -0
  192. package/src/routes/samplewsimages.js +0 -12
  193. package/src/routes/snp.js +0 -11
  194. package/src/routes/termdb.DE.js +0 -13
  195. package/src/routes/termdb.boxplot.js +0 -12
  196. package/src/routes/termdb.categories.js +0 -48
  197. package/src/routes/termdb.cluster.js +0 -12
  198. package/src/routes/termdb.cohort.summary.js +0 -12
  199. package/src/routes/termdb.cohorts.js +0 -12
  200. package/src/routes/termdb.descrstats.js +0 -48
  201. package/src/routes/termdb.numericcategories.js +0 -12
  202. package/src/routes/termdb.percentile.js +0 -49
  203. package/src/routes/termdb.rootterm.js +0 -27
  204. package/src/routes/termdb.sampleImages.js +0 -12
  205. package/src/routes/termdb.singleSampleMutation.js +0 -12
  206. package/src/routes/termdb.singlecellDEgenes.js +0 -12
  207. package/src/routes/termdb.singlecellData.js +0 -12
  208. package/src/routes/termdb.singlecellSamples.js +0 -12
  209. package/src/routes/termdb.termchildren.js +0 -28
  210. package/src/routes/termdb.termsbyids.js +0 -12
  211. package/src/routes/termdb.topTermsByType.js +0 -12
  212. package/src/routes/termdb.topVariablyExpressedGenes.js +0 -12
  213. package/src/routes/termdb.violin.js +0 -49
  214. package/src/routes/tileserver.js +0 -12
  215. package/src/routes/wsimages.js +0 -12
  216. package/src/terms/categorical.js +0 -0
  217. package/src/terms/condition.js +0 -0
  218. package/src/terms/geneExpression.js +0 -0
  219. package/src/terms/geneVariant.js +0 -0
  220. package/src/terms/metaboliteIntensity.js +0 -0
  221. package/src/terms/numeric.js +0 -0
  222. package/src/terms/q.js +0 -0
  223. package/src/terms/samplelst.js +0 -0
  224. package/src/terms/singleCellCellType.js +0 -0
  225. package/src/terms/singleCellGeneExpression.js +0 -0
  226. package/src/terms/snp.js +0 -0
  227. package/src/terms/snps.js +0 -0
  228. package/src/terms/term.js +0 -0
  229. package/src/terms/tw.js +0 -0
  230. package/src/terms/updated-types.js +0 -0
  231. package/src/termsetting.js +0 -0
  232. package/src/test/numeric.type.spec.js +0 -117
  233. package/src/vocab.js +0 -0
@@ -0,0 +1,113 @@
1
+ import {
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+ __toESM,
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+ require_lib
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+ } from "./chunk-Z6B6IQIY.js";
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+
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+ // dist/genesetOverrepresentation.ts
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+ var import_typia = __toESM(require_lib(), 1);
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+
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+ // src/routes/genesetOverrepresentation.ts
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+ var genesetOverrepresentationPayload = {
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+ request: {
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+ typeId: "GenesetOverrepresentationRequest"
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+ },
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+ response: {
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+ typeId: "GenesetOverrepresentationResponse"
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+ }
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+ // examples: []
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+ };
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+
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+ // dist/genesetOverrepresentation.ts
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+ var validGenesetOverrepresentationRequest = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => "string" === typeof input3.sample_genes && (void 0 === input3.background_genes || "string" === typeof input3.background_genes) && "string" === typeof input3.genome && "string" === typeof input3.geneSetGroup && "boolean" === typeof input3.filter_non_coding_genes;
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+ return "object" === typeof input2 && null !== input2 && $io0(input2);
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+ };
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+ if (false === __is(input)) {
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+ const $report = import_typia.createValidate.report(errors);
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+ ((input2, _path, _exceptionable = true) => {
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+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.sample_genes || $report(_exceptionable2, {
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+ path: _path2 + ".sample_genes",
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+ expected: "string",
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+ value: input3.sample_genes
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+ }), void 0 === input3.background_genes || "string" === typeof input3.background_genes || $report(_exceptionable2, {
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+ path: _path2 + ".background_genes",
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+ expected: "(string | undefined)",
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+ value: input3.background_genes
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+ }), "string" === typeof input3.genome || $report(_exceptionable2, {
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+ path: _path2 + ".genome",
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+ expected: "string",
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+ value: input3.genome
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+ }), "string" === typeof input3.geneSetGroup || $report(_exceptionable2, {
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+ path: _path2 + ".geneSetGroup",
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+ expected: "string",
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+ value: input3.geneSetGroup
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+ }), "boolean" === typeof input3.filter_non_coding_genes || $report(_exceptionable2, {
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+ path: _path2 + ".filter_non_coding_genes",
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+ expected: "boolean",
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+ value: input3.filter_non_coding_genes
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+ })].every((flag) => flag);
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+ return ("object" === typeof input2 && null !== input2 || $report(true, {
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+ path: _path + "",
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+ expected: "GenesetOverrepresentationRequest",
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+ value: input2
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+ })) && $vo0(input2, _path + "", true) || $report(true, {
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+ path: _path + "",
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+ expected: "GenesetOverrepresentationRequest",
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+ value: input2
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+ });
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+ })(input, "$input", true);
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+ }
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+ const success = 0 === errors.length;
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+ return {
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+ success,
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+ errors,
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+ data: success ? input : void 0
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+ };
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+ };
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+ var validGenesetOverrepresentationResponse = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.pathway_name && "number" === typeof input2.p_value_original && "number" === typeof input2.p_value_adjusted);
73
+ };
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+ if (false === __is(input)) {
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+ const $report = import_typia.createValidate.report(errors);
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+ ((input2, _path, _exceptionable = true) => {
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+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.pathway_name || $report(_exceptionable2, {
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+ path: _path2 + ".pathway_name",
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+ expected: "string",
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+ value: input3.pathway_name
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+ }), "number" === typeof input3.p_value_original || $report(_exceptionable2, {
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+ path: _path2 + ".p_value_original",
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+ expected: "number",
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+ value: input3.p_value_original
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+ }), "number" === typeof input3.p_value_adjusted || $report(_exceptionable2, {
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+ path: _path2 + ".p_value_adjusted",
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+ expected: "number",
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+ value: input3.p_value_adjusted
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+ })].every((flag) => flag);
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+ return ("object" === typeof input2 && null !== input2 || $report(true, {
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+ path: _path + "",
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+ expected: "GenesetOverrepresentationResponse",
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+ value: input2
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+ })) && $vo0(input2, _path + "", true) || $report(true, {
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+ path: _path + "",
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+ expected: "GenesetOverrepresentationResponse",
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+ value: input2
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+ });
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+ })(input, "$input", true);
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+ }
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+ const success = 0 === errors.length;
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+ return {
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+ success,
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+ errors,
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+ data: success ? input : void 0
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+ };
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+ };
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+
109
+ export {
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+ genesetOverrepresentationPayload,
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+ validGenesetOverrepresentationRequest,
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+ validGenesetOverrepresentationResponse
113
+ };