@sjcrh/proteinpaint-types 2.188.1 → 2.190.0

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Files changed (245) hide show
  1. package/README.md +8 -20
  2. package/dist/index.js +422 -553
  3. package/dist/index.js.map +7 -0
  4. package/package.json +13 -25
  5. package/dist/aiProjectAdmin.js +0 -11
  6. package/dist/aiProjectSelectedWSImages.js +0 -11
  7. package/dist/aiProjectTrainModel.js +0 -11
  8. package/dist/alphaGenome.js +0 -11
  9. package/dist/alphaGenomeTypes.js +0 -11
  10. package/dist/brainImaging.js +0 -11
  11. package/dist/brainImagingSamples.js +0 -11
  12. package/dist/burden.js +0 -11
  13. package/dist/chunk-2744ACBX.js +0 -126
  14. package/dist/chunk-2BCLGYAG.js +0 -96
  15. package/dist/chunk-2C4X5B6N.js +0 -62
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  61. package/dist/chunk-TD4YLTHL.js +0 -158
  62. package/dist/chunk-TEXOICIS.js +0 -11810
  63. package/dist/chunk-THQOFV2K.js +0 -205
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  73. package/dist/chunk-X4JBWMXY.js +0 -130
  74. package/dist/chunk-X5E72ZXA.js +0 -5979
  75. package/dist/chunk-YNHC5SXO.js +0 -1780
  76. package/dist/chunk-YPEFUAJW.js +0 -62
  77. package/dist/chunk-YSTMGNYR.js +0 -113
  78. package/dist/chunk-YW5G4M5D.js +0 -158
  79. package/dist/chunk-Z3IYM5OK.js +0 -296
  80. package/dist/chunk-ZCV62ELK.js +0 -96
  81. package/dist/chunk-ZIOJDN75.js +0 -197
  82. package/dist/chunk-ZMDZYG5B.js +0 -4224
  83. package/dist/clearwsisession.js +0 -78
  84. package/dist/clearwsisessions.js +0 -13
  85. package/dist/correlationVolcano.js +0 -11
  86. package/dist/dataset.js +0 -11
  87. package/dist/deleteWSITileSelection.js +0 -11
  88. package/dist/dsdata.js +0 -11
  89. package/dist/dzimages.js +0 -11
  90. package/dist/gdc.grin2.js +0 -17
  91. package/dist/gdc.maf.js +0 -11
  92. package/dist/gdc.mafBuild.js +0 -11
  93. package/dist/genelookup.js +0 -11
  94. package/dist/genesetEnrichment.js +0 -11
  95. package/dist/genesetOverrepresentation.js +0 -11
  96. package/dist/grin2.js +0 -11
  97. package/dist/healthcheck.js +0 -11
  98. package/dist/hicdata.js +0 -11
  99. package/dist/hicgenome.js +0 -11
  100. package/dist/hicstat.js +0 -11
  101. package/dist/img.js +0 -11
  102. package/dist/isoformlst.js +0 -11
  103. package/dist/ntseq.js +0 -11
  104. package/dist/pdomain.js +0 -11
  105. package/dist/samplewsimages.js +0 -13
  106. package/dist/saveWSIAnnotation.js +0 -11
  107. package/dist/snp.js +0 -11
  108. package/dist/termdb.DE.js +0 -11
  109. package/dist/termdb.categories.js +0 -11
  110. package/dist/termdb.chat.js +0 -3631
  111. package/dist/termdb.chat2.js +0 -15
  112. package/dist/termdb.cluster.js +0 -11
  113. package/dist/termdb.cohort.summary.js +0 -11
  114. package/dist/termdb.cohorts.js +0 -11
  115. package/dist/termdb.dapVolcano.js +0 -11
  116. package/dist/termdb.descrstats.js +0 -11
  117. package/dist/termdb.diffMeth.js +0 -11
  118. package/dist/termdb.dmr.js +0 -11
  119. package/dist/termdb.filterTermValues.js +0 -11
  120. package/dist/termdb.isoformAvailability.js +0 -11
  121. package/dist/termdb.numericcategories.js +0 -11
  122. package/dist/termdb.percentile.js +0 -11
  123. package/dist/termdb.profileFormScores.js +0 -11
  124. package/dist/termdb.profileForms2Scores.js +0 -11
  125. package/dist/termdb.profileScores.js +0 -11
  126. package/dist/termdb.proteome.js +0 -11
  127. package/dist/termdb.rootterm.js +0 -11
  128. package/dist/termdb.runChart.js +0 -13
  129. package/dist/termdb.sampleImages.js +0 -11
  130. package/dist/termdb.sampleScatter.js +0 -11
  131. package/dist/termdb.singleSampleMutation.js +0 -11
  132. package/dist/termdb.singlecellDEgenes.js +0 -11
  133. package/dist/termdb.singlecellData.js +0 -11
  134. package/dist/termdb.singlecellSamples.js +0 -11
  135. package/dist/termdb.termchildren.js +0 -11
  136. package/dist/termdb.termsbyids.js +0 -11
  137. package/dist/termdb.topMutatedGenes.js +0 -11
  138. package/dist/termdb.topTermsByType.js +0 -11
  139. package/dist/termdb.topVariablyExpressedGenes.js +0 -11
  140. package/dist/termdb.violinBox.js +0 -17
  141. package/dist/tileserver.js +0 -11
  142. package/dist/wsimages.js +0 -11
  143. package/dist/wsisamples.js +0 -11
  144. package/src/Mclass.ts +0 -8
  145. package/src/dataset.ts +0 -2186
  146. package/src/docs.json +0 -16417
  147. package/src/fileOrUrl.ts +0 -15
  148. package/src/filter.ts +0 -110
  149. package/src/genome.ts +0 -129
  150. package/src/index.ts +0 -94
  151. package/src/routes/aiProjectAdmin.ts +0 -37
  152. package/src/routes/aiProjectSelectedWSImages.ts +0 -48
  153. package/src/routes/aiProjectTrainModel.ts +0 -20
  154. package/src/routes/alphaGenome.ts +0 -27
  155. package/src/routes/alphaGenomeTypes.ts +0 -21
  156. package/src/routes/brainImaging.ts +0 -47
  157. package/src/routes/brainImagingSamples.ts +0 -25
  158. package/src/routes/burden.ts +0 -113
  159. package/src/routes/clearwsisessions.ts +0 -19
  160. package/src/routes/correlationVolcano.ts +0 -51
  161. package/src/routes/dataset.ts +0 -14
  162. package/src/routes/deleteWSITileSelection.ts +0 -25
  163. package/src/routes/dsdata.ts +0 -14
  164. package/src/routes/dzimages.ts +0 -25
  165. package/src/routes/errorResponse.ts +0 -6
  166. package/src/routes/filter.gdc.ts +0 -15
  167. package/src/routes/gdc.grin2.ts +0 -246
  168. package/src/routes/gdc.maf.ts +0 -52
  169. package/src/routes/gdc.mafBuild.ts +0 -20
  170. package/src/routes/genelookup.ts +0 -22
  171. package/src/routes/genesetEnrichment.ts +0 -116
  172. package/src/routes/genesetOverrepresentation.ts +0 -48
  173. package/src/routes/grin2.ts +0 -173
  174. package/src/routes/healthcheck.ts +0 -80
  175. package/src/routes/hicdata.ts +0 -48
  176. package/src/routes/hicgenome.ts +0 -50
  177. package/src/routes/hicstat.ts +0 -57
  178. package/src/routes/img.ts +0 -23
  179. package/src/routes/isoformlst.ts +0 -14
  180. package/src/routes/ntseq.ts +0 -14
  181. package/src/routes/pdomain.ts +0 -14
  182. package/src/routes/routeApi.ts +0 -47
  183. package/src/routes/samplewsimages.ts +0 -44
  184. package/src/routes/saveWSIAnnotation.ts +0 -25
  185. package/src/routes/snp.ts +0 -13
  186. package/src/routes/termdb.DE.ts +0 -220
  187. package/src/routes/termdb.categories.ts +0 -74
  188. package/src/routes/termdb.chat2.ts +0 -190
  189. package/src/routes/termdb.cluster.ts +0 -134
  190. package/src/routes/termdb.cohort.summary.ts +0 -14
  191. package/src/routes/termdb.cohorts.ts +0 -14
  192. package/src/routes/termdb.dapVolcano.ts +0 -35
  193. package/src/routes/termdb.descrstats.ts +0 -75
  194. package/src/routes/termdb.diffMeth.ts +0 -63
  195. package/src/routes/termdb.dmr.ts +0 -121
  196. package/src/routes/termdb.filterTermValues.ts +0 -23
  197. package/src/routes/termdb.isoformAvailability.ts +0 -22
  198. package/src/routes/termdb.numericcategories.ts +0 -32
  199. package/src/routes/termdb.percentile.ts +0 -67
  200. package/src/routes/termdb.profileFormScores.ts +0 -26
  201. package/src/routes/termdb.profileForms2Scores.ts +0 -25
  202. package/src/routes/termdb.profileScores.ts +0 -27
  203. package/src/routes/termdb.proteome.ts +0 -13
  204. package/src/routes/termdb.rootterm.ts +0 -49
  205. package/src/routes/termdb.runChart.ts +0 -66
  206. package/src/routes/termdb.sampleImages.ts +0 -26
  207. package/src/routes/termdb.sampleScatter.ts +0 -60
  208. package/src/routes/termdb.singleSampleMutation.ts +0 -51
  209. package/src/routes/termdb.singlecellDEgenes.ts +0 -50
  210. package/src/routes/termdb.singlecellData.ts +0 -75
  211. package/src/routes/termdb.singlecellSamples.ts +0 -50
  212. package/src/routes/termdb.termchildren.ts +0 -49
  213. package/src/routes/termdb.termsbyids.ts +0 -26
  214. package/src/routes/termdb.topMutatedGenes.ts +0 -51
  215. package/src/routes/termdb.topTermsByType.ts +0 -32
  216. package/src/routes/termdb.topVariablyExpressedGenes.ts +0 -54
  217. package/src/routes/termdb.violinBox.ts +0 -230
  218. package/src/routes/tileserver.ts +0 -14
  219. package/src/routes/wsimages.ts +0 -34
  220. package/src/routes/wsisamples.ts +0 -25
  221. package/src/termdb.matrix.ts +0 -57
  222. package/src/terms/categorical.ts +0 -18
  223. package/src/terms/condition.ts +0 -73
  224. package/src/terms/date.ts +0 -20
  225. package/src/terms/dnaMethylation.ts +0 -28
  226. package/src/terms/geneExpression.ts +0 -38
  227. package/src/terms/geneVariant.ts +0 -132
  228. package/src/terms/isoformExpression.ts +0 -36
  229. package/src/terms/metaboliteIntensity.ts +0 -30
  230. package/src/terms/numeric.ts +0 -278
  231. package/src/terms/proteomeAbundance.ts +0 -38
  232. package/src/terms/q.ts +0 -105
  233. package/src/terms/qualitative.ts +0 -73
  234. package/src/terms/samplelst.ts +0 -34
  235. package/src/terms/singleCellCellType.ts +0 -18
  236. package/src/terms/singleCellGeneExpression.ts +0 -32
  237. package/src/terms/snp.ts +0 -24
  238. package/src/terms/snps.ts +0 -111
  239. package/src/terms/ssGSEA.ts +0 -26
  240. package/src/terms/term.ts +0 -60
  241. package/src/terms/termCollection.ts +0 -139
  242. package/src/terms/tw.ts +0 -64
  243. package/src/termsetting.ts +0 -201
  244. package/src/test/numeric.type.spec.ts +0 -275
  245. package/src/vocab.ts +0 -37
@@ -1,96 +0,0 @@
1
- import {
2
- __toESM,
3
- require_lib
4
- } from "./chunk-YNHC5SXO.js";
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-
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- // dist/dzimages.ts
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- var import_typia = __toESM(require_lib(), 1);
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-
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- // src/routes/dzimages.ts
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- var dzImagesPayload = {
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- request: {
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- typeId: "DZImagesRequest"
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- },
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- response: {
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- typeId: "DZImagesResponse"
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- }
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- // examples: []
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- };
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-
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- // dist/dzimages.ts
21
- var validDZImagesRequest = (input) => {
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- const errors = [];
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- const __is = (input2) => {
24
- const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && "string" === typeof input3.file && (void 0 === input3.sampleId || "string" === typeof input3.sampleId) && (void 0 === input3.sample_id || "string" === typeof input3.sample_id);
25
- return "object" === typeof input2 && null !== input2 && $io0(input2);
26
- };
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- if (false === __is(input)) {
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- const $report = import_typia.createValidate.report(errors);
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- ((input2, _path, _exceptionable = true) => {
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- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
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- path: _path2 + ".genome",
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- expected: "string",
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- value: input3.genome
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- }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
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- path: _path2 + ".dslabel",
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- expected: "string",
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- value: input3.dslabel
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- }), "string" === typeof input3.file || $report(_exceptionable2, {
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- path: _path2 + ".file",
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- expected: "string",
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- value: input3.file
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- }), void 0 === input3.sampleId || "string" === typeof input3.sampleId || $report(_exceptionable2, {
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- path: _path2 + ".sampleId",
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- expected: "(string | undefined)",
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- value: input3.sampleId
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- }), void 0 === input3.sample_id || "string" === typeof input3.sample_id || $report(_exceptionable2, {
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- path: _path2 + ".sample_id",
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- expected: "(string | undefined)",
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- value: input3.sample_id
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- })].every((flag) => flag);
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- return ("object" === typeof input2 && null !== input2 || $report(true, {
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- path: _path + "",
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- expected: "DZImagesRequest",
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- value: input2
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- })) && $vo0(input2, _path + "", true) || $report(true, {
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- path: _path + "",
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- expected: "DZImagesRequest",
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- value: input2
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- });
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- })(input, "$input", true);
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- }
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- const success = 0 === errors.length;
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- return {
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- success,
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- errors,
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- data: success ? input : void 0
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- };
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- };
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- var validDZImagesResponse = (input) => {
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- const errors = [];
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- const __is = (input2) => {
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- return "string" === typeof input2;
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- };
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- if (false === __is(input)) {
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- const $report = import_typia.createValidate.report(errors);
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- ((input2, _path, _exceptionable = true) => {
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- return "string" === typeof input2 || $report(true, {
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- path: _path + "",
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- expected: "string",
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- value: input2
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- });
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- })(input, "$input", true);
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- }
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- const success = 0 === errors.length;
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- return {
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- success,
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- errors,
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- data: success ? input : void 0
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- };
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- };
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-
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- export {
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- dzImagesPayload,
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- validDZImagesRequest,
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- validDZImagesResponse
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- };
@@ -1,197 +0,0 @@
1
- import {
2
- __toESM,
3
- require_lib
4
- } from "./chunk-YNHC5SXO.js";
5
-
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- // dist/termdb.profileFormScores.ts
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- var import_typia = __toESM(require_lib(), 1);
8
-
9
- // src/routes/termdb.profileFormScores.ts
10
- var ProfileFormScoresPayload = {
11
- request: {
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- typeId: "ProfileFormScoresRequest"
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- },
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- response: {
15
- typeId: "ProfileFormScoresResponse"
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- }
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- };
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-
19
- // dist/termdb.profileFormScores.ts
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- var validProfileFormScoresRequest = (input) => {
21
- const errors = [];
22
- const __is = (input2) => {
23
- const $io0 = (input3) => Array.isArray(input3.scoreTerms) && (void 0 === input3.scScoreTerms || Array.isArray(input3.scScoreTerms)) && true && (void 0 === input3.userSites || Array.isArray(input3.userSites) && input3.userSites.every((elem) => "string" === typeof elem)) && (void 0 === input3.site || "string" === typeof input3.site) && (void 0 === input3.isAggregate || "boolean" === typeof input3.isAggregate);
24
- return "object" === typeof input2 && null !== input2 && $io0(input2);
25
- };
26
- if (false === __is(input)) {
27
- const $report = import_typia.createValidate.report(errors);
28
- ((input2, _path, _exceptionable = true) => {
29
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [Array.isArray(input3.scoreTerms) || $report(_exceptionable2, {
30
- path: _path2 + ".scoreTerms",
31
- expected: "Array<any>",
32
- value: input3.scoreTerms
33
- }), void 0 === input3.scScoreTerms || Array.isArray(input3.scScoreTerms) || $report(_exceptionable2, {
34
- path: _path2 + ".scScoreTerms",
35
- expected: "(Array<any> | undefined)",
36
- value: input3.scScoreTerms
37
- }), true, void 0 === input3.userSites || (Array.isArray(input3.userSites) || $report(_exceptionable2, {
38
- path: _path2 + ".userSites",
39
- expected: "(Array<string> | undefined)",
40
- value: input3.userSites
41
- })) && input3.userSites.map((elem, _index1) => "string" === typeof elem || $report(_exceptionable2, {
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- path: _path2 + ".userSites[" + _index1 + "]",
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- expected: "string",
44
- value: elem
45
- })).every((flag) => flag) || $report(_exceptionable2, {
46
- path: _path2 + ".userSites",
47
- expected: "(Array<string> | undefined)",
48
- value: input3.userSites
49
- }), void 0 === input3.site || "string" === typeof input3.site || $report(_exceptionable2, {
50
- path: _path2 + ".site",
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- expected: "(string | undefined)",
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- value: input3.site
53
- }), void 0 === input3.isAggregate || "boolean" === typeof input3.isAggregate || $report(_exceptionable2, {
54
- path: _path2 + ".isAggregate",
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- expected: "(boolean | undefined)",
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- value: input3.isAggregate
57
- })].every((flag) => flag);
58
- return ("object" === typeof input2 && null !== input2 || $report(true, {
59
- path: _path + "",
60
- expected: "ProfileFormScoresRequest",
61
- value: input2
62
- })) && $vo0(input2, _path + "", true) || $report(true, {
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- path: _path + "",
64
- expected: "ProfileFormScoresRequest",
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- value: input2
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- });
67
- })(input, "$input", true);
68
- }
69
- const success = 0 === errors.length;
70
- return {
71
- success,
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- errors,
73
- data: success ? input : void 0
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- };
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- };
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- var validProfileFormScoresResponse = (input) => {
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- const errors = [];
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- const __is = (input2) => {
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- const $join = import_typia.createValidate.join;
80
- const $io0 = (input3) => "object" === typeof input3.term2Score && null !== input3.term2Score && false === Array.isArray(input3.term2Score) && $io1(input3.term2Score) && (Array.isArray(input3.sites) && input3.sites.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && (void 0 === input3.hospital || "string" === typeof input3.hospital) && "number" === typeof input3.n;
81
- const $io1 = (input3) => Object.keys(input3).every((key) => {
82
- const value = input3[key];
83
- if (void 0 === value)
84
- return true;
85
- if (RegExp(/(.*)/).test(key))
86
- return "object" === typeof value && null !== value && false === Array.isArray(value) && $io2(value);
87
- return true;
88
- });
89
- const $io2 = (input3) => Object.keys(input3).every((key) => {
90
- const value = input3[key];
91
- if (void 0 === value)
92
- return true;
93
- if (RegExp(/(.*)/).test(key))
94
- return "number" === typeof value;
95
- return true;
96
- });
97
- const $io3 = (input3) => "string" === typeof input3.label && "string" === typeof input3.value;
98
- return "object" === typeof input2 && null !== input2 && $io0(input2);
99
- };
100
- if (false === __is(input)) {
101
- const $report = import_typia.createValidate.report(errors);
102
- ((input2, _path, _exceptionable = true) => {
103
- const $join = import_typia.createValidate.join;
104
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.term2Score && null !== input3.term2Score && false === Array.isArray(input3.term2Score) || $report(_exceptionable2, {
105
- path: _path2 + ".term2Score",
106
- expected: "__type",
107
- value: input3.term2Score
108
- })) && $vo1(input3.term2Score, _path2 + ".term2Score", _exceptionable2) || $report(_exceptionable2, {
109
- path: _path2 + ".term2Score",
110
- expected: "__type",
111
- value: input3.term2Score
112
- }), (Array.isArray(input3.sites) || $report(_exceptionable2, {
113
- path: _path2 + ".sites",
114
- expected: "Array<__type>",
115
- value: input3.sites
116
- })) && input3.sites.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
117
- path: _path2 + ".sites[" + _index1 + "]",
118
- expected: "__type.o2",
119
- value: elem
120
- })) && $vo3(elem, _path2 + ".sites[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
121
- path: _path2 + ".sites[" + _index1 + "]",
122
- expected: "__type.o2",
123
- value: elem
124
- })).every((flag) => flag) || $report(_exceptionable2, {
125
- path: _path2 + ".sites",
126
- expected: "Array<__type>",
127
- value: input3.sites
128
- }), void 0 === input3.hospital || "string" === typeof input3.hospital || $report(_exceptionable2, {
129
- path: _path2 + ".hospital",
130
- expected: "(string | undefined)",
131
- value: input3.hospital
132
- }), "number" === typeof input3.n || $report(_exceptionable2, {
133
- path: _path2 + ".n",
134
- expected: "number",
135
- value: input3.n
136
- })].every((flag) => flag);
137
- const $vo1 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
138
- const value = input3[key];
139
- if (void 0 === value)
140
- return true;
141
- if (RegExp(/(.*)/).test(key))
142
- return ("object" === typeof value && null !== value && false === Array.isArray(value) || $report(_exceptionable2, {
143
- path: _path2 + $join(key),
144
- expected: "__type.o1",
145
- value
146
- })) && $vo2(value, _path2 + $join(key), _exceptionable2) || $report(_exceptionable2, {
147
- path: _path2 + $join(key),
148
- expected: "__type.o1",
149
- value
150
- });
151
- return true;
152
- }).every((flag) => flag)].every((flag) => flag);
153
- const $vo2 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
154
- const value = input3[key];
155
- if (void 0 === value)
156
- return true;
157
- if (RegExp(/(.*)/).test(key))
158
- return "number" === typeof value || $report(_exceptionable2, {
159
- path: _path2 + $join(key),
160
- expected: "number",
161
- value
162
- });
163
- return true;
164
- }).every((flag) => flag)].every((flag) => flag);
165
- const $vo3 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.label || $report(_exceptionable2, {
166
- path: _path2 + ".label",
167
- expected: "string",
168
- value: input3.label
169
- }), "string" === typeof input3.value || $report(_exceptionable2, {
170
- path: _path2 + ".value",
171
- expected: "string",
172
- value: input3.value
173
- })].every((flag) => flag);
174
- return ("object" === typeof input2 && null !== input2 || $report(true, {
175
- path: _path + "",
176
- expected: "ProfileFormScoresResponse",
177
- value: input2
178
- })) && $vo0(input2, _path + "", true) || $report(true, {
179
- path: _path + "",
180
- expected: "ProfileFormScoresResponse",
181
- value: input2
182
- });
183
- })(input, "$input", true);
184
- }
185
- const success = 0 === errors.length;
186
- return {
187
- success,
188
- errors,
189
- data: success ? input : void 0
190
- };
191
- };
192
-
193
- export {
194
- ProfileFormScoresPayload,
195
- validProfileFormScoresRequest,
196
- validProfileFormScoresResponse
197
- };